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["Table S18. List of HuRef gains that overlap with exons of OMIM genes."]
["chrom","start","end","size","type","method","gene"]
["chr1",2231246,2231246,2,1,"  assembly comparison","SKI"]
["chr1",11007592,11007592,5,1,"  assembly comparison","TARDBP"]
["chr1",11768690,11768690,1,1,"  assembly comparison","MTHFR"]
["chr1",11769926,11769926,3,1,"  assembly comparison","MTHFR"]
["chr1",20850446,20850446,3,1,"  assembly comparison","PINK1"]
["chr1",22318304,22318304,2,1,"  assembly comparison","WNT4"]
["chr1",22846968,22846968,17,1,"  assembly comparison","C1QC"]
["chr1",25561153,25623155,62003,1,"  NimbleGen 42M","RHCE"]
["chr1",25767055,25767055,2,1,"  assembly comparison","LDLRAP1"]
["chr1",26016311,26016311,5,1,"  assembly comparison","SEPN1"]
["chr1",37850780,37850780,2,1,"  assembly comparison","RSPO1"]
["chr1",40311794,40311794,4,1,"  assembly comparison","PPT1"]
["chr1",45748850,45748850,1,1,"  assembly comparison","MMACHC"]
["chr1",47455490,47455490,1,1,"  assembly comparison","TAL1"]
["chr1",85505169,85505169,1,1,"  assembly comparison","BCL10"]
["chr1",114741750,114741750,1,1,"  assembly comparison","TRIM33"]
["chr1",120085921,120085921,1,1,"  assembly comparison","PHGDH"]
["chr1",148752595,148752595,1,1,"  assembly comparison","ECM1"]
["chr1",149050578,149050578,8,1,"  assembly comparison","ARNT"]
["chr1",149051095,149051095,1,1,"  assembly comparison","ARNT"]
["chr1",149115695,149115695,1,1,"  assembly comparison","ARNT"]
["chr1",151500614,151500614,12,1,"  split read","LOR"]
["chr1",151500634,151500634,12,1,"  assembly comparison","LOR"]
["chr1",152405801,152405801,2,1,"  assembly comparison","TPM3"]
["chr1",152817567,152817567,2,1,"  assembly comparison","CHRNB2"]
["chr1",152821588,152821588,8,1,"  assembly comparison","ADAR"]
["chr1",156922990,156922990,4,1,"  assembly comparison","SPTA1"]
["chr1",156923056,156923056,1,1,"  assembly comparison","SPTA1"]
["chr1",158265828,158265828,1,1,"  assembly comparison","PIGM"]
["chr1",158266214,158266214,1,1,"  assembly comparison","PIGM"]
["chr1",159541261,159541261,1,1,"  assembly comparison","MPZ"]
["chr1",160601500,160601500,8,1,"  assembly comparison","NOS1AP"]
["chr1",160605495,160605495,2,1,"  assembly comparison","NOS1AP"]
["chr1",160605885,160605885,1,1,"  assembly comparison","NOS1AP"]
["chr1",163086339,163086339,1,1,"  assembly comparison","PBX1"]
["chr1",177337149,177337149,1,1,"  assembly comparison","ABL2"]
["chr1",245678780,245678780,1,1,"  assembly comparison","NLRP3"]
["chr10",8136728,8136728,2,1,"  assembly comparison","GATA3"]
["chr10",18869232,18869232,3,1,"  assembly comparison","CACNB2"]
["chr10",18869992,18869992,4,1,"  assembly comparison","CACNB2"]
["chr10",31856387,31856387,2,1,"  assembly comparison","ZEB1"]
["chr10",55235821,55235821,4,1,"  assembly comparison","PCDH15"]
["chr10",72027605,72027605,1,1,"  assembly comparison","PRF1"]
["chr10",72827056,72827056,5,1,"  assembly comparison","CDH23"]
["chr10",73247093,73247093,1,1,"  assembly comparison","PSAP"]
["chr10",75548762,75548762,1,1,"  assembly comparison","VCL"]
["chr10",75549795,75549795,2,1,"  assembly comparison","VCL"]
["chr10",79485141,79485141,1,1,"  assembly comparison","RPS24"]
["chr10",82039233,82039233,6,1,"  assembly comparison","MAT1A"]
["chr10",88484997,88484997,1,1,"  assembly comparison","LDB3"]
["chr10",88674251,88674251,1,1,"  assembly comparison","BMPR1A"]
["chr10",89496142,89496142,2,1,"  assembly comparison","PAPSS2"]
["chr10",91180751,91180751,1,1,"  assembly comparison","SLC16A12"]
["chr10",101460856,101460856,1,1,"  assembly comparison","COX15"]
["chr10",112034852,112034852,5,1,"  assembly comparison","MXI1"]
["chr10",112035935,112035935,1,1,"  assembly comparison","MXI1"]
["chr10",112036254,112036254,2,1,"  assembly comparison","MXI1"]
["chr10",122658347,122658347,4,1,"  assembly comparison","BRWD2"]
["chr11",737448,737448,3,1,"  assembly comparison","TALDO1"]
["chr11",814998,814998,1,1,"  assembly comparison","PNPLA2"]
["chr11",1906509,1917664,17245,1,"  mate pair","TNNT3"]
["chr11",2109862,2109862,19,1,"  assembly comparison","IGF2"]
["chr11",2619670,2620776,2460,1,"  mate pair","KCNQ1OT1"]
["chr11",2645411,2645411,1,1,"  assembly comparison","KCNQ1OT1"]
["chr11",2658139,2658139,1,1,"  assembly comparison","KCNQ1OT1"]
["chr11",2660313,2660313,4,1,"  assembly comparison","KCNQ1OT1"]
["chr11",2660936,2660936,1,1,"  assembly comparison","KCNQ1OT1"]
["chr11",6368510,6368510,13,1,"  split read","SMPD1"]
["chr11",6368547,6368547,12,1,"  assembly comparison","SMPD1"]
["chr11",12922078,12922078,1,1,"  assembly comparison","TEAD1"]
["chr11",12922619,12922619,1,1,"  assembly comparison","TEAD1"]
["chr11",14253655,14256941,2923,1,"  mate pair","RRAS2"]
["chr11",17472036,17472036,4,1,"  assembly comparison","USH1C"]
["chr11",22171459,22171459,24,1,"  assembly comparison","ANO5"]
["chr11",22601476,22601476,1,1,"  assembly comparison","FANCF"]
["chr11",27637751,27637751,2,1,"  assembly comparison","BDNF"]
["chr11",27637772,27637772,2,1,"  assembly comparison","BDNF"]
["chr11",31764812,31764812,4,1,"  assembly comparison","PAX6"]
["chr11",31765165,31765165,4,1,"  assembly comparison","PAX6"]
["chr11",47393866,47393866,1,1,"  assembly comparison","SLC39A13"]
["chr11",48148897,48148897,1,1,"  assembly comparison","PTPRJ"]
["chr11",62137659,62137659,1,1,"  assembly comparison","ROM1"]
["chr11",68280177,68280177,1,1,"  assembly comparison","CPT1A"]
["chr11",69176753,69176753,2,1,"  assembly comparison","CCND1"]
["chr11",73844429,73844429,1,1,"  assembly comparison","KCNE3"]
["chr11",73844873,73844873,10,1,"  assembly comparison","KCNE3"]
["chr11",87697372,87697372,1,1,"  assembly comparison","CTSC"]
["chr11",100505050,100505050,1,1,"  assembly comparison","PGR"]
["chr11",100828187,100828187,4,1,"  assembly comparison","TRPC6"]
["chr11",102319216,102319216,1,1,"  assembly comparison","MMP13"]
["chr11",109672465,109672465,1,1,"  assembly comparison","RDX"]
["chr11",111142363,111142363,18,1,"  assembly comparison","PPP2R1B"]
["chr11",111439095,111439095,1,1,"  assembly comparison","DLAT"]
["chr11",116166505,116166505,1,1,"  assembly comparison","APOA5"]
["chr11",118034254,118034254,1,1,"  assembly comparison","TREH"]
["chr11",119038954,119038954,5,1,"  assembly comparison","PVRL1"]
["chr11",125266538,125266538,2,1,"  assembly comparison","HYLS1"]
["chr12",2671285,2671285,14,1,"  assembly comparison","CACNA1C"]
["chr12",6326807,6326807,1,1,"  assembly comparison","SCNN1A"]
["chr12",11935671,11935671,2,1,"  assembly comparison","ETV6"]
["chr12",11936434,11936434,1,1,"  assembly comparison","ETV6"]
["chr12",11939500,11939500,2,1,"  assembly comparison","ETV6"]
["chr12",24856526,24856526,1,1,"  assembly comparison","BCAT1"]
["chr12",24858628,24858628,1,1,"  assembly comparison","BCAT1"]
["chr12",24860807,24860807,1,1,"  assembly comparison","BCAT1"]
["chr12",25251727,25251727,1,1,"  assembly comparison","KRAS"]
["chr12",25252380,25252380,1,1,"  assembly comparison","KRAS"]
["chr12",28002596,28002596,1,1,"  assembly comparison","PTHLH"]
["chr12",32835428,32835428,1,1,"  assembly comparison","PKP2"]
["chr12",50974799,51069560,94762,1,"  NimbleGen 42M","KRT86/KRT83/KRT85"]
["chr12",51493869,51493869,42,1,"  assembly comparison","KRT4"]
["chr12",54782885,54782885,3,1,"  assembly comparison","ERBB3"]
["chr12",55131182,55131182,1,1,"  assembly comparison","MIP"]
["chr12",68033555,68033555,13,1,"  assembly comparison","LYZ"]
["chr12",101876337,101876337,3,1,"  assembly comparison","ASCL1"]
["chr12",107480606,107480606,1,1,"  assembly comparison","ISCU"]
["chr12",107487225,107487225,1,1,"  assembly comparison","ISCU"]
["chr12",110714291,110714291,1,1,"  assembly comparison","ALDH2"]
["chr12",113605991,113605991,1,1,"  assembly comparison","TBX3"]
["chr12",113606283,113606283,4,1,"  assembly comparison","TBX3"]
["chr13",19558939,19558939,2,1,"  assembly comparison","ZMYM2"]
["chr13",24354631,24354631,1,1,"  assembly comparison","CENPJ"]
["chr13",24355004,24355004,3,1,"  assembly comparison","CENPJ"]
["chr13",30802693,30802693,1,1,"  assembly comparison","B3GALTL"]
["chr13",69611518,69611518,3,1,"  assembly comparison","ATXN8OS"]
["chr13",83349511,83349511,1,1,"  assembly comparison","SLITRK1"]
["chr13",101171798,101171798,4,1,"  assembly comparison","FGF14"]
["chr13",101172222,101172222,1,1,"  assembly comparison","FGF14"]
["chr13",110164208,110164208,1,1,"  assembly comparison","ING1"]
["chr14",28307805,28307805,1,1,"  assembly comparison","FOXG1"]
["chr14",34250428,34250428,1,1,"  assembly comparison","CFL2"]
["chr14",36056023,36056023,1,1,"  assembly comparison","NKX2-1"]
["chr14",38600929,38602977,3520,1,"  mate pair","SEC23A"]
["chr14",53486351,53486351,2,1,"  assembly comparison","BMP4"]
["chr14",64285404,64285404,2,1,"  assembly comparison","SPTB"]
["chr14",80681603,80681603,1,1,"  assembly comparison","TSHR"]
["chr14",92375922,92375922,1,1,"  assembly comparison","GOLGA5"]
["chr15",20598211,20598211,2,1,"  assembly comparison","NIPA1"]
["chr15",24341435,24341435,4,1,"  assembly comparison","GABRB3"]
["chr15",50389362,50389362,6,1,"  assembly comparison","MYO5A"]
["chr15",50391431,50391431,9,1,"  assembly comparison","MYO5A"]
["chr15",56640458,56641579,1122,1,"  Agilent 24M","LIPC"]
["chr15",61149559,61149559,16,1,"  assembly comparison","TPM1"]
["chr15",61150474,61150474,10,1,"  assembly comparison","TPM1"]
["chr15",71401174,71401174,1,1,"  assembly comparison","HCN4"]
["chr15",72282608,72282608,2,1,"  assembly comparison","STRA6"]
["chr15",72445369,72445369,1,1,"  assembly comparison","CYP11A1"]
["chr15",97321214,97321214,1,1,"  assembly comparison","IGF1R"]
["chr16",2074985,2074985,3,1,"  assembly comparison","TSC2"]
["chr16",3232305,3232305,3,1,"  assembly comparison","MEFV"]
["chr16",5074901,5074901,2,1,"  assembly comparison","ALG1"]
["chr16",8714656,8714656,1,1,"  assembly comparison","ABAT"]
["chr16",11550411,11550411,1,1,"  assembly comparison","LITAF"]
["chr16",27368299,27368299,2,1,"  assembly comparison","IL21R"]
["chr16",31013376,31014004,629,1,"  Agilent 24M","VKORC1"]
["chr16",49727943,49727943,1,1,"  assembly comparison","SALL1"]
["chr16",74069797,74069797,1,1,"  assembly comparison","CHST6"]
["chr16",74070039,74070549,511,1,"  Agilent 24M","CHST6"]
["chr16",78186120,78186120,1,1,"  assembly comparison","MAF"]
["chr16",78189198,78189198,1,1,"  assembly comparison","MAF"]
["chr16",78189673,78189673,1,1,"  assembly comparison","MAF"]
["chr16",78189869,78189869,3,1,"  assembly comparison","MAF"]
["chr16",78190008,78190008,2,1,"  assembly comparison","MAF"]
["chr16",82506764,82506764,1,1,"  assembly comparison","MLYCD"]
["chr16",87033845,87033845,27,1,"  assembly comparison","ZNF469"]
["chr16",88131199,88131199,1,1,"  assembly comparison","SPG7"]
["chr16",88151493,88151493,4,1,"  assembly comparison","SPG7"]
["chr17",1604729,1604729,1,1,"  assembly comparison","SERPINF2"]
["chr17",3511460,3511460,1,1,"  assembly comparison","CTNS"]
["chr17",3511470,3511470,1,1,"  assembly comparison","CTNS"]
["chr17",3512794,3512794,1,1,"  assembly comparison","CTNS"]
["chr17",3746909,3746909,1,1,"  assembly comparison","P2RX1"]
["chr17",6298804,6298804,1,1,"  assembly comparison","PITPNM3"]
["chr17",17655460,17655460,1,1,"  assembly comparison","RAI1"]
["chr17",30926035,30926035,4,1,"  assembly comparison","PEX12"]
["chr17",38318196,38318196,1,1,"  assembly comparison","G6PC"]
["chr17",39186969,39186969,1,1,"  assembly comparison","SOST"]
["chr17",39681771,39681771,4,1,"  assembly comparison","SLC4A1"]
["chr17",41460462,41460462,1,1,"  assembly comparison","MAPT"]
["chr17",43379804,43379804,1,1,"  assembly comparison","PNPO"]
["chr17",56915796,56915796,2,1,"  assembly comparison","TBX4"]
["chr17",59370185,59370185,2,1,"  assembly comparison","SCN4A"]
["chr17",59370482,59370482,10,1,"  assembly comparison","SCN4A"]
["chr17",61729428,61729428,1,1,"  assembly comparison","PRKCA"]
["chr17",64038772,64038772,1,1,"  assembly comparison","PRKAR1A"]
["chr17",65685780,65685780,1,1,"  assembly comparison","KCNJ2"]
["chr17",73636409,73636409,1,1,"  assembly comparison","TMC6"]
["chr18",13873732,13873732,2,1,"  assembly comparison","MC2R"]
["chr18",45649667,45661295,11629,1,"  NimbleGen 42M","MYO5B"]
["chr18",46864381,46864381,2,1,"  assembly comparison","SMAD4"]
["chr18",53367654,53367654,3,1,"  assembly comparison","FECH"]
["chr18",54567010,54567010,4,1,"  assembly comparison","MALT1"]
["chr18",58942856,58942856,1,1,"  assembly comparison","BCL2"]
["chr18",59146568,59146568,1,1,"  assembly comparison","KDSR"]
["chr18",75576196,75576196,3,1,"  assembly comparison","CTDP1"]
["chr19",3582632,3582632,2,1,"  assembly comparison","PIP5K1C"]
["chr19",7065058,7065058,1,1,"  assembly comparison","INSR"]
["chr19",7065930,7065930,1,1,"  assembly comparison","INSR"]
["chr19",17797730,17797730,2,1,"  assembly comparison","JAK3"]
["chr19",17797910,17797910,3,1,"  assembly comparison","JAK3"]
["chr19",37859876,37859876,1,1,"  assembly comparison","RGS9BP"]
["chr19",37861023,37861023,1,1,"  assembly comparison","RGS9BP"]
["chr19",43912610,43912610,1,1,"  assembly comparison","ACTN4"]
["chr19",50723923,50723923,1,1,"  assembly comparison","OPA3"]
["chr19",53035792,53035792,3,1,"  assembly comparison","CRX"]
["chr19",55102625,55102625,1,1,"  assembly comparison","NUP62"]
["chr19",62434330,62434330,1,1,"  assembly comparison","AURKC"]
["chr2",10110312,10110312,2,1,"  assembly comparison","KLF11"]
["chr2",26330633,26330633,3,1,"  assembly comparison","HADHB"]
["chr2",26554323,26554323,2,1,"  assembly comparison","OTOF"]
["chr2",31604678,31604681,22,1,"  split read","SRD5A2"]
["chr2",31659386,31659386,1,1,"  assembly comparison","SRD5A2"]
["chr2",32235233,32235233,3,1,"  assembly comparison","SPAST"]
["chr2",38156522,38156522,1,1,"  assembly comparison","CYP1B1"]
["chr2",39062412,39062412,1,1,"  assembly comparison","SOS1"]
["chr2",39064226,39064226,2,1,"  assembly comparison","SOS1"]
["chr2",39066070,39066070,2,1,"  assembly comparison","SOS1"]
["chr2",43967787,43967787,12,1,"  assembly comparison","LRPPRC"]
["chr2",48836267,48836267,6,1,"  assembly comparison","LHCGR"]
["chr2",73466539,73466539,6,1,"  assembly comparison","ALMS1"]
["chr2",73528738,73528738,3,1,"  assembly comparison","ALMS1"]
["chr2",85630016,85630016,4,1,"  assembly comparison","GGCX"]
["chr2",86865921,86865921,2,1,"  assembly comparison","CD8A"]
["chr2",121466097,121466097,6,1,"  assembly comparison","GLI2"]
["chr2",166763185,166763185,4,1,"  assembly comparison","SCN9A"]
["chr2",169692311,169692311,2,1,"  assembly comparison","LRP2"]
["chr2",176692439,176692439,6,1,"  assembly comparison","HOXD10"]
["chr2",178112983,178112983,4,1,"  assembly comparison","AGPS"]
["chr2",178115023,178115023,1,1,"  assembly comparison","AGPS"]
["chr2",178196745,178196745,1,1,"  assembly comparison","PDE11A"]
["chr2",178197247,178197247,2,1,"  assembly comparison","PDE11A"]
["chr2",178202425,178202425,3,1,"  assembly comparison","PDE11A"]
["chr2",179099893,179099893,1,1,"  assembly comparison","TTN"]
["chr2",179170548,179170548,1,1,"  assembly comparison","TTN"]
["chr2",189585545,189585545,2,1,"  assembly comparison","COL3A1"]
["chr2",199842678,199842678,2,1,"  assembly comparison","SATB2"]
["chr2",199843494,199843494,1,1,"  assembly comparison","SATB2"]
["chr2",199844528,199844528,1,1,"  assembly comparison","SATB2"]
["chr2",208173207,208173207,4,1,"  assembly comparison","CREB1"]
["chr2",208173232,208173232,4,1,"  assembly comparison","CREB1"]
["chr2",208177458,208177458,4,1,"  assembly comparison","CREB1"]
["chr2",208931378,208931378,3,1,"  assembly comparison","PIP5K3"]
["chr2",215504554,215504554,4,1,"  assembly comparison","ABCA12"]
["chr2",219354793,219354793,1,1,"  assembly comparison","CYP27A1"]
["chr2",233119262,233119262,1,1,"  assembly comparison","CHRNG"]
["chr2",233119282,233119282,1,1,"  assembly comparison","CHRNG"]
["chr2",238818422,238818422,1,1,"  assembly comparison","PER2"]
["chr2",238818450,238818450,3,1,"  assembly comparison","PER2"]
["chr20",6004043,6004043,1,1,"  assembly comparison","FERMT1"]
["chr20",10567289,10567289,1,1,"  assembly comparison","JAG1"]
["chr20",47085937,47085937,1,1,"  assembly comparison","ARFGEF2"]
["chr20",47555085,47555085,2,1,"  assembly comparison","PTGIS"]
["chr20",61547110,61552364,2530,1,"  mate pair","KCNQ2"]
["chr21",34741868,34741868,1,1,"  assembly comparison","KCNE1"]
["chr21",37045190,37045190,1,1,"  assembly comparison","HLCS"]
["chr21",37045276,37045276,2,1,"  assembly comparison","HLCS"]
["chr21",44566077,44567268,1192,1,"  Agilent 24M","PFKL"]
["chr21",46370274,46370743,470,1,"  Agilent 24M","COL6A2"]
["chr22",21940584,21941325,742,1,"  Agilent 24M","BCR"]
["chr22",26476769,26476769,1,1,"  assembly comparison","MN1"]
["chr22",26524962,26524962,3,1,"  assembly comparison","MN1"]
["chr22",28422813,28422813,1,1,"  assembly comparison","NF2"]
["chr22",31587163,31587163,1,1,"  assembly comparison","TIMP3"]
["chr22",36499958,36499958,6,1,"  assembly comparison","TRIOBP"]
["chr22",39905498,39905498,1,1,"  assembly comparison","EP300"]
["chr22",48866379,48866379,1,1,"  assembly comparison","MLC1"]
["chr3",3167529,3167529,4,1,"  assembly comparison","CRBN"]
["chr3",4864093,4864093,2,1,"  assembly comparison","ITPR1"]
["chr3",10342783,10342783,1,1,"  assembly comparison","ATP2B2"]
["chr3",24135456,24135456,1,1,"  assembly comparison","THRB"]
["chr3",30710343,30710343,1,1,"  assembly comparison","TGFBR2"]
["chr3",33160039,33160039,6,1,"  assembly comparison","CRTAP"]
["chr3",38509145,38509145,1,1,"  assembly comparison","ACVR2B"]
["chr3",38564677,38564677,25,1,"  assembly comparison","SCN5A"]
["chr3",41256435,41256435,1,1,"  assembly comparison","CTNNB1"]
["chr3",41256609,41256609,4,1,"  assembly comparison","CTNNB1"]
["chr3",46598020,46598020,1,1,"  assembly comparison","TDGF1"]
["chr3",58093595,58094330,736,1,"  NimbleGen 42M","FLNB"]
["chr3",81893394,81893394,1,1,"  assembly comparison","GBE1"]
["chr3",123486916,123486916,1,1,"  assembly comparison","CASR"]
["chr3",130370485,130370485,1,1,"  assembly comparison","CNBP"]
["chr3",166973575,166973575,1,1,"  assembly comparison","BCHE"]
["chr3",170348216,170348216,2,1,"  assembly comparison","EVI1"]
["chr3",188055559,188055559,1,1,"  assembly comparison","ADIPOQ"]
["chr3",188055955,188055955,1,1,"  assembly comparison","ADIPOQ"]
["chr3",188922455,188922455,2,1,"  assembly comparison","BCL6"]
["chr3",190990212,190990212,2,1,"  assembly comparison","TP63"]
["chr4",3213476,3213476,3,1,"  assembly comparison","HTT"]
["chr4",4916413,4916413,1,1,"  assembly comparison","MSX1"]
["chr4",5864787,5864787,58,1,"  assembly comparison","EVC"]
["chr4",17122856,17122856,1,1,"  assembly comparison","QDPR"]
["chr4",25287631,25287631,1,1,"  assembly comparison","SLC34A2"]
["chr4",25289407,25289407,2,1,"  assembly comparison","SLC34A2"]
["chr4",68304180,68304180,1,1,"  assembly comparison","GNRHR"]
["chr4",72654807,72654807,30,1,"  assembly comparison","SLC4A4"]
["chr4",99583212,99583212,1,1,"  assembly comparison","RAP1GDS1"]
["chr4",104028647,104028647,2,1,"  assembly comparison","CISD2"]
["chr4",123884817,123884817,1,1,"  assembly comparison","BBS12"]
["chr4",148684428,148684428,1,1,"  assembly comparison","EDNRA"]
["chr4",155892364,155892364,2,1,"  assembly comparison","LRAT"]
["chr4",187369812,187369812,6,1,"  assembly comparison","CYP4V2"]
["chr4",187369845,187369845,12,1,"  assembly comparison","CYP4V2"]
["chr5",10318889,10318889,5,1,"  assembly comparison","CCT5"]
["chr5",11025888,11025888,1,1,"  assembly comparison","CTNND2"]
["chr5",14759024,14759024,1,1,"  assembly comparison","ANKH"]
["chr5",14762018,14762018,1,1,"  assembly comparison","ANKH"]
["chr5",14762412,14762412,1,1,"  assembly comparison","ANKH"]
["chr5",14763363,14763363,4,1,"  assembly comparison","ANKH"]
["chr5",32747434,32747434,6,1,"  assembly comparison","NPR3"]
["chr5",34043963,34043963,20,1,"  assembly comparison","AMACR"]
["chr5",38512393,38512393,1,1,"  assembly comparison","LIFR"]
["chr5",41018182,41018182,188,1,"  assembly comparison","C7"]
["chr5",68774798,68774798,1,1,"  assembly comparison","MARVELD2"]
["chr5",79986488,79986488,18,1,"  assembly comparison","DHFR/MSH3"]
["chr5",82912892,82912892,8,1,"  assembly comparison","VCAN"]
["chr5",82913550,82913550,1,1,"  assembly comparison","VCAN"]
["chr5",95753725,95753725,3,1,"  assembly comparison","PCSK1"]
["chr5",112208136,112208136,1,1,"  assembly comparison","APC"]
["chr5",112388852,112388852,1,1,"  assembly comparison","MCC"]
["chr5",112389171,112389171,2,1,"  assembly comparison","MCC"]
["chr5",112389206,112389206,2,1,"  assembly comparison","MCC"]
["chr5",125907575,125907575,1,1,"  assembly comparison","ALDH7A1"]
["chr5",131758819,131758819,2,1,"  assembly comparison","SLC22A5"]
["chr5",132232347,132232347,1,1,"  assembly comparison","UQCRQ"]
["chr5",142583876,142583876,2,1,"  assembly comparison","ARHGAP26"]
["chr5",142640895,142640895,2,1,"  assembly comparison","NR3C1"]
["chr5",142763208,142763208,1,1,"  assembly comparison","NR3C1"]
["chr5",146238514,146238514,18,1,"  split read","PPP2R2B"]
["chr5",148341923,148341923,1,1,"  assembly comparison","SH3TC2"]
["chr5",148344914,148344914,1,1,"  assembly comparison","SH3TC2"]
["chr5",148352356,148352356,1,1,"  assembly comparison","SH3TC2"]
["chr5",148352378,148352378,1,1,"  assembly comparison","SH3TC2"]
["chr5",149220420,149220420,1,1,"  assembly comparison","PDE6A"]
["chr5",149413593,149413593,1,1,"  assembly comparison","CSF1R"]
["chr5",150628435,150628435,1,1,"  assembly comparison","GM2A"]
["chr5",150628479,150628479,1,1,"  assembly comparison","GM2A"]
["chr5",158674785,158674785,1,1,"  assembly comparison","IL12B"]
["chr5",161515071,161515071,2,1,"  assembly comparison","GABRG2"]
["chr5",169465710,169465710,1,1,"  assembly comparison","FOXI1"]
["chr5",174090198,174090198,1,1,"  assembly comparison","MSX2"]
["chr5",175979852,175979852,1,1,"  assembly comparison","SNCB"]
["chr5",176659676,176659676,1,1,"  assembly comparison","NSD1"]
["chr5",179196387,179196387,2,1,"  assembly comparison","SQSTM1"]
["chr6",356004,356004,1,1,"  assembly comparison","IRF4"]
["chr6",16435893,16435893,12,1,"  split read","ATXN1"]
["chr6",32904443,32904443,10,1,"  assembly comparison","TAP2"]
["chr6",33376428,33376428,8,1,"  assembly comparison","TAPBP"]
["chr6",34312948,34312948,2,1,"  assembly comparison","HMGA1"]
["chr6",35899223,35899223,2,1,"  assembly comparison","LHFPL5"]
["chr6",43691406,43691406,1,1,"  assembly comparison","POLH"]
["chr6",46780165,46780165,2,1,"  assembly comparison","PLA2G7"]
["chr6",46780206,46780206,2,1,"  assembly comparison","PLA2G7"]
["chr6",47700432,47700432,6,1,"  assembly comparison","CD2AP"]
["chr6",50919974,50919974,1,1,"  assembly comparison","TFAP2B"]
["chr6",52466142,52466142,24,1,"  assembly comparison","EFHC1"]
["chr6",52466847,52466847,2,1,"  assembly comparison","EFHC1"]
["chr6",53470414,53470414,1,1,"  assembly comparison","GCLC"]
["chr6",70983091,70983091,1,1,"  assembly comparison","COL9A1"]
["chr6",81110520,81110520,1,1,"  assembly comparison","BCKDHB"]
["chr6",88278484,88278484,4,1,"  assembly comparison","SLC35A1"]
["chr6",107581981,107581981,1,1,"  assembly comparison","PDSS2"]
["chr6",108296491,108296491,4,1,"  assembly comparison","SEC63"]
["chr6",121811614,121811614,1,1,"  assembly comparison","GJA1"]
["chr6",132253839,132253839,1,1,"  assembly comparison","ENPP1"]
["chr6",132256809,132256809,2,1,"  assembly comparison","ENPP1"]
["chr6",144554375,144554375,1,1,"  assembly comparison","STX11"]
["chr6",150765742,150765742,15,1,"  assembly comparison","IYD"]
["chr6",152463615,152463615,1,1,"  assembly comparison","ESR1"]
["chr6",160446961,160446961,2,1,"  assembly comparison","IGF2R"]
["chr6",167373521,167373521,1,1,"  assembly comparison","FGFR1OP"]
["chr6",170712964,170712964,3,1,"  assembly comparison","TBP"]
["chr6",170712971,170712971,6,1,"  assembly comparison","TBP"]
["chr7",2533502,2533502,6,1,"  assembly comparison","LFNG"]
["chr7",19122008,19122008,1,1,"  assembly comparison","TWIST1"]
["chr7",22947454,22947454,2,1,"  assembly comparison","FAM126A"]
["chr7",25128180,25128180,1,1,"  assembly comparison","CYCS"]
["chr7",27203084,27203084,1,1,"  assembly comparison","HOXA13"]
["chr7",50437108,50437108,1,1,"  assembly comparison","IKZF1"]
["chr7",56046776,56046776,1,1,"  assembly comparison","PSPH"]
["chr7",80146106,80146106,1,1,"  assembly comparison","CD36"]
["chr7",91490117,91490117,3,1,"  assembly comparison","AKAP9"]
["chr7",93898295,93898295,7,1,"  assembly comparison","COL1A2"]
["chr7",100158247,100158247,1,1,"  assembly comparison","EPO"]
["chr7",100568448,100568448,9,1,"  assembly comparison","SERPINE1"]
["chr7",103417066,103417066,1,1,"  assembly comparison","RELN"]
["chr7",115986904,115986904,1,1,"  assembly comparison","CAV1"]
["chr7",117094522,117094522,1,1,"  assembly comparison","CFTR"]
["chr7",127037885,127037885,4,1,"  assembly comparison","PAX4"]
["chr7",127684874,127684874,3,1,"  assembly comparison","LEP"]
["chr7",147743816,147743816,1,1,"  assembly comparison","CNTNAP2"]
["chr7",147746571,147746571,2,1,"  assembly comparison","CNTNAP2"]
["chr7",147747625,147747625,1,1,"  assembly comparison","CNTNAP2"]
["chr7",156490810,156490810,1,1,"  assembly comparison","MNX1"]
["chr8",1699302,1699302,1,1,"  assembly comparison","CLN8"]
["chr8",1716995,1716995,3,1,"  assembly comparison","CLN8"]
["chr8",1717554,1717554,2,1,"  assembly comparison","CLN8"]
["chr8",6322551,6326002,5196,1,"  mate pair","MCPH1"]
["chr8",8680317,8680317,2,1,"  assembly comparison","MFHAS1"]
["chr8",16041655,16041655,1,1,"  assembly comparison","MSR1"]
["chr8",17929694,17929694,1,1,"  assembly comparison","PCM1"]
["chr8",17930971,17930971,1,1,"  assembly comparison","PCM1"]
["chr8",25337789,25337789,1,1,"  assembly comparison","GNRH1"]
["chr8",27717003,27717003,4,1,"  assembly comparison","ESCO2"]
["chr8",38400010,38400010,1,1,"  assembly comparison","FGFR1"]
["chr8",55705713,55705713,1,1,"  assembly comparison","RP1"]
["chr8",57237485,57237485,1,1,"  assembly comparison","PLAG1"]
["chr8",57238349,57238349,1,1,"  assembly comparison","PLAG1"]
["chr8",61753924,61753924,3,1,"  assembly comparison","CHD7"]
["chr8",77941608,77941608,1,1,"  assembly comparison","ZFHX4"]
["chr8",97225695,97225695,2,1,"  assembly comparison","GDF6"]
["chr8",97311311,97311311,2,1,"  assembly comparison","UQCRB"]
["chr8",100957322,100957322,3,1,"  assembly comparison","VPS13B"]
["chr8",100957668,100957668,2,1,"  assembly comparison","VPS13B"]
["chr8",100957768,100957768,3,1,"  assembly comparison","VPS13B"]
["chr8",102750670,102750670,13,1,"  assembly comparison","GRHL2"]
["chr8",103320356,103320356,8,1,"  assembly comparison","RRM2B"]
["chr8",116490685,116490685,8,1,"  assembly comparison","TRPS1"]
["chr8",116491336,116491336,1,1,"  assembly comparison","TRPS1"]
["chr8",116493446,116493446,1,1,"  assembly comparison","TRPS1"]
["chr8",143736820,143736820,2,1,"  assembly comparison","JRK"]
["chr9",2612171,2612171,3,1,"  assembly comparison","VLDLR"]
["chr9",3816471,3816471,1,1,"  assembly comparison","GLIS3"]
["chr9",3817616,3817616,1,1,"  assembly comparison","GLIS3"]
["chr9",4108201,4108201,1,1,"  assembly comparison","GLIS3"]
["chr9",12700264,12700264,3,1,"  assembly comparison","TYRP1"]
["chr9",32531034,32531034,1,1,"  assembly comparison","TOPORS"]
["chr9",36206351,36206351,30,1,"  assembly comparison","GNE"]
["chr9",70877575,70877575,3,1,"  assembly comparison","FXN"]
["chr9",74640956,74640956,1,1,"  assembly comparison","TMC1"]
["chr9",96405242,96405242,1,1,"  assembly comparison","FBP1"]
["chr9",97310490,97310490,3,1,"  assembly comparison","PTCH1"]
["chr9",100953511,100953511,1,1,"  assembly comparison","TGFBR1"]
["chr9",101667081,101667081,3,1,"  assembly comparison","NR4A3"]
["chr9",103163357,103163357,2,1,"  assembly comparison","BAAT"]
["chr9",128500935,128500935,1,1,"  assembly comparison","LMX1B"]
["chr9",130719172,130719172,2,1,"  assembly comparison","LRRC8A"]
["chr9",134761155,134761155,1,1,"  assembly comparison","TSC1"]
["chr9",136874843,136874843,4,1,"  assembly comparison","COL5A1"]
["chr9",138509891,138509891,1,1,"  assembly comparison","NOTCH1"]
["chrX",2892465,2892465,1,1,"  assembly comparison","ARSE"]
["chrX",8417605,8473489,55885,1,"  NimbleGen 42M","KAL1"]
["chrX",10495397,10495397,1,1,"  assembly comparison","MID1"]
["chrX",15247778,15247778,1,1,"  assembly comparison","PIGA"]
["chrX",47226952,47226952,10,1,"  assembly comparison","ZNF41"]
["chrX",50353276,50353276,1,1,"  assembly comparison","SHROOM4"]
["chrX",53237985,53237985,1,1,"  assembly comparison","JARID1C"]
["chrX",53730325,53730325,11,1,"  assembly comparison","HUWE1"]
["chrX",67977953,67977953,2,1,"  assembly comparison","EFNB1"]
["chrX",119446182,119446182,1,1,"  assembly comparison","LAMP2"]
["chrX",119455199,119455199,2,1,"  assembly comparison","LAMP2"]
["chrX",122146067,122146067,1,1,"  assembly comparison","GRIA3"]
["chrX",122450649,122450649,2,1,"  assembly comparison","GRIA3"]
["chrX",122873021,122873021,1,1,"  assembly comparison","XIAP"]
["chrX",122873892,122873892,1,1,"  assembly comparison","XIAP"]
["chrX",133387796,133387796,1,1,"  assembly comparison","PHF6"]
["chrX",148368738,148368738,1,1,"  assembly comparison","IDS"]
["chrX",152603797,152633238,29442,1,"  NimbleGen 42M","SLC6A8"]
["chrX",152823641,152823641,1,1,"  assembly comparison","AVPR2"]