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["Table S19. List of HuRef losses that overlap with exons of OMIM genes."]
["chrom","start","end","size","type","method","gene"]
["chr1",9249487,9249488,1,-1,"  assembly comparison","H6PD"]
["chr1",16234677,16257931,23255,-1,"  split read","CLCNKB"]
["chr1",20850443,20850445,3,-1,"  assembly comparison","PINK1"]
["chr1",21446403,21458931,3940,-1,"  mate pair","ECE1"]
["chr1",22063120,22084921,9822,-1,"  mate pair","HSPG2"]
["chr1",22318305,22318309,4,-1,"  assembly comparison","WNT4"]
["chr1",22846968,22846985,17,-1,"  assembly comparison","C1QC"]
["chr1",22847135,22847136,1,-1,"  assembly comparison","C1QC"]
["chr1",26017031,26017032,1,-1,"  assembly comparison","SEPN1"]
["chr1",29318926,29318927,1,-1,"  assembly comparison","EPB41"]
["chr1",37849936,37850006,71,-1,"  split read","RSPO1"]
["chr1",45748328,45748330,2,-1,"  assembly comparison","MMACHC"]
["chr1",63676073,63676078,5,-1,"  assembly comparison","ALG6"]
["chr1",85505168,85505169,1,-1,"  assembly comparison","BCL10"]
["chr1",85516171,85516172,1,-1,"  assembly comparison","BCL10"]
["chr1",116030666,116038610,5094,-1,"  mate pair","VANGL1"]
["chr1",116036705,116036706,1,-1,"  assembly comparison","VANGL1"]
["chr1",149050558,149050560,2,-1,"  assembly comparison","ARNT"]
["chr1",149115704,149115706,2,-1,"  assembly comparison","ARNT"]
["chr1",150545285,150546257,972,-1,"  assembly comparison","FLG"]
["chr1",152401464,152401466,2,-1,"  assembly comparison","TPM3"]
["chr1",152404905,152404906,1,-1,"  assembly comparison","TPM3"]
["chr1",152817569,152817571,2,-1,"  assembly comparison","CHRNB2"]
["chr1",152823385,152823387,2,-1,"  assembly comparison","ADAR"]
["chr1",156847183,156847184,1,-1,"  assembly comparison","SPTA1"]
["chr1",156847578,156847580,2,-1,"  assembly comparison","SPTA1"]
["chr1",158265213,158265214,1,-1,"  assembly comparison","PIGM"]
["chr1",159749579,159913028,163450,-1,"  NimbleGen 42M","FCGR3A"]
["chr1",160604863,160604865,2,-1,"  assembly comparison","NOS1AP"]
["chr1",166549805,166549809,4,-1,"  assembly comparison","TBX19"]
["chr1",177337782,177337789,7,-1,"  assembly comparison","ABL2"]
["chr1",180809214,180851986,9383,-1,"  mate pair","RNASEL"]
["chr1",181826602,181826603,1,-1,"  assembly comparison","NCF2"]
["chr1",199276066,199279810,4120,-1,"  mate pair","CACNA1S"]
["chr1",209732055,209732057,2,-1,"  assembly comparison","RD3"]
["chr1",235130341,235130343,2,-1,"  assembly comparison","MTR"]
["chr1",236063285,236063286,1,-1,"  assembly comparison","RYR2"]
["chr10",8126716,8136939,3971,-1,"  mate pair","GATA3"]
["chr10",13360126,13360127,1,-1,"  assembly comparison","PHYH"]
["chr10",14989882,14989883,1,-1,"  assembly comparison","DCLRE1C"]
["chr10",18729591,18729592,1,-1,"  assembly comparison","CACNB2"]
["chr10",18868692,18868694,2,-1,"  assembly comparison","CACNB2"]
["chr10",18869264,18869266,2,-1,"  assembly comparison","CACNB2"]
["chr10",27038468,27041985,3372,-1,"  mate pair","PDSS1"]
["chr10",61218860,61218861,1,-1,"  assembly comparison","CCDC6"]
["chr10",61219664,61219665,1,-1,"  assembly comparison","CCDC6"]
["chr10",64242050,64242051,1,-1,"  assembly comparison","EGR2"]
["chr10",72027620,72027621,1,-1,"  assembly comparison","PRF1"]
["chr10",78303834,78303835,1,-1,"  assembly comparison","KCNMA1"]
["chr10",88484745,88484746,1,-1,"  assembly comparison","LDB3"]
["chr10",88485537,88485538,1,-1,"  assembly comparison","LDB3"]
["chr10",89613840,89613841,1,-1,"  assembly comparison","PTEN"]
["chr10",89716666,89716668,2,-1,"  assembly comparison","PTEN"]
["chr10",91180751,91180752,1,-1,"  assembly comparison","SLC16A12"]
["chr10",91182218,91182219,1,-1,"  assembly comparison","SLC16A12"]
["chr10",100167466,100167467,1,-1,"  assembly comparison","HPS1"]
["chr10",102578574,102578579,5,-1,"  assembly comparison","PAX2"]
["chr10",112034852,112034857,5,-1,"  assembly comparison","MXI1"]
["chr10",119292437,119292438,1,-1,"  assembly comparison","EMX2"]
["chr10",119298070,119298074,4,-1,"  assembly comparison","EMX2"]
["chr10",124350253,124367546,14346,-1,"  mate pair","DMBT1"]
["chr11",814991,814995,4,-1,"  assembly comparison","PNPLA2"]
["chr11",815000,815001,1,-1,"  assembly comparison","PNPLA2"]
["chr11",822987,822990,3,-1,"  assembly comparison","CD151"]
["chr11",2109379,2109381,2,-1,"  assembly comparison","IGF2"]
["chr11",2109420,2109422,2,-1,"  assembly comparison","IGF2"]
["chr11",2109603,2109607,4,-1,"  assembly comparison","IGF2"]
["chr11",2626808,2626810,2,-1,"  assembly comparison","KCNQ1OT1"]
["chr11",2636385,2636388,3,-1,"  assembly comparison","KCNQ1OT1"]
["chr11",2648902,2648914,13,-1,"  split read","KCNQ1OT1"]
["chr11",2649034,2653591,4768,-1,"  mate pair","KCNQ1OT1"]
["chr11",2649475,2649476,1,-1,"  assembly comparison","KCNQ1OT1"]
["chr11",2660936,2660937,1,-1,"  assembly comparison","KCNQ1OT1"]
["chr11",2676251,2676252,1,-1,"  assembly comparison","KCNQ1OT1"]
["chr11",3690009,3690011,2,-1,"  assembly comparison","NUP98"]
["chr11",6368511,6368528,18,-1,"  assembly comparison","SMPD1"]
["chr11",17366727,17366728,1,-1,"  assembly comparison","KCNJ11"]
["chr11",22257998,22258000,2,-1,"  assembly comparison","ANO5"]
["chr11",22259648,22259649,1,-1,"  assembly comparison","ANO5"]
["chr11",22259780,22259784,4,-1,"  assembly comparison","ANO5"]
["chr11",27635593,27635594,1,-1,"  assembly comparison","BDNF"]
["chr11",27699995,27699996,1,-1,"  assembly comparison","BDNF"]
["chr11",48146704,48146710,6,-1,"  assembly comparison","PTPRJ"]
["chr11",65392743,65402610,3262,-1,"  mate pair","EFEMP2"]
["chr11",86335922,86335926,4,-1,"  assembly comparison","FZD4"]
["chr11",86335933,86335935,2,-1,"  assembly comparison","FZD4"]
["chr11",87697905,87697908,3,-1,"  assembly comparison","CTSC"]
["chr11",111247355,111247356,1,-1,"  assembly comparison","ALG9"]
["chr11",117720302,117720306,4,-1,"  assembly comparison","CD3G"]
["chr11",118403646,118403647,1,-1,"  assembly comparison","SLC37A4"]
["chr11",119863053,119863055,2,-1,"  assembly comparison","ARHGEF12"]
["chr11",120686392,120686393,1,-1,"  assembly comparison","SC5DL"]
["chr12",2674528,2674529,1,-1,"  assembly comparison","CACNA1C"]
["chr12",4349425,4349429,4,-1,"  assembly comparison","FGF23"]
["chr12",4894569,4894571,2,-1,"  assembly comparison","KCNA1"]
["chr12",7233634,7233650,17,-1,"  split read","PEX5"]
["chr12",7234402,7234446,45,-1,"  split read","PEX5"]
["chr12",11935660,11935662,2,-1,"  assembly comparison","ETV6"]
["chr12",11938617,11938618,1,-1,"  assembly comparison","ETV6"]
["chr12",11939490,11939492,2,-1,"  assembly comparison","ETV6"]
["chr12",24859002,24859003,1,-1,"  assembly comparison","BCAT1"]
["chr12",25249935,25249937,2,-1,"  assembly comparison","KRAS"]
["chr12",25250732,25250733,1,-1,"  assembly comparison","KRAS"]
["chr12",28002586,28002587,1,-1,"  assembly comparison","PTHLH"]
["chr12",32687661,32687665,4,-1,"  assembly comparison","FGD4"]
["chr12",32835426,32835427,1,-1,"  assembly comparison","PKP2"]
["chr12",41139335,41139336,1,-1,"  assembly comparison","PRICKLE1"]
["chr12",41267333,41274966,4846,-1,"  mate pair","PRICKLE1"]
["chr12",48637946,48637950,4,-1,"  assembly comparison","AQP2"]
["chr12",51355501,51355522,21,-1,"  assembly comparison","KRT1"]
["chr12",55131197,55131198,1,-1,"  assembly comparison","MIP"]
["chr12",64504810,64504816,6,-1,"  assembly comparison","HMGA2"]
["chr12",99313971,99316413,3234,-1,"  mate pair","SLC17A8"]
["chr12",99339580,99339589,9,-1,"  assembly comparison","SLC17A8"]
["chr12",101318052,101318053,1,-1,"  assembly comparison","IGF1"]
["chr12",101877347,101877348,1,-1,"  assembly comparison","ASCL1"]
["chr12",101878324,101878325,1,-1,"  assembly comparison","ASCL1"]
["chr12",108477660,108477661,1,-1,"  assembly comparison","MMAB"]
["chr12",108478835,108478837,2,-1,"  assembly comparison","MMAB"]
["chr12",110521161,110521164,3,-1,"  assembly comparison","ATXN2"]
["chr12",113276343,113276344,1,-1,"  assembly comparison","TBX5"]
["chr12",113605990,113605991,1,-1,"  assembly comparison","TBX3"]
["chr12",120549167,120549173,6,-1,"  assembly comparison","ORAI1"]
["chr13",19558911,19558913,2,-1,"  assembly comparison","ZMYM2"]
["chr13",22801219,22801224,5,-1,"  assembly comparison","SACS"]
["chr13",24355007,24355010,3,-1,"  assembly comparison","CENPJ"]
["chr13",30752235,30761768,3511,-1,"  mate pair","B3GALTL"]
["chr13",35774375,35774378,4,-1,"  assembly comparison","SPG20"]
["chr13",36299922,36299923,1,-1,"  assembly comparison","RFXAP"]
["chr13",38358550,38358551,1,-1,"  assembly comparison","FREM2"]
["chr13",69611536,69611545,9,-1,"  assembly comparison","ATXN8OS"]
["chr13",101171515,101171518,3,-1,"  assembly comparison","FGF14"]
["chr13",102495458,102495463,5,-1,"  assembly comparison","SLC10A2"]
["chr13",110164200,110164201,1,-1,"  assembly comparison","ING1"]
["chr14",22864693,22864694,1,-1,"  assembly comparison","PABPN1"]
["chr14",22865057,22865058,1,-1,"  assembly comparison","PABPN1"]
["chr14",23640691,23645412,5040,-1,"  mate pair","PCK2"]
["chr14",23788241,23788263,22,-1,"  assembly comparison","TGM1"]
["chr14",28307805,28307806,1,-1,"  assembly comparison","FOXG1"]
["chr14",34250429,34250430,1,-1,"  assembly comparison","CFL2"]
["chr14",36055787,36055788,1,-1,"  assembly comparison","NKX2-1"]
["chr14",60181998,60181999,1,-1,"  assembly comparison","SIX1"]
["chr14",60182504,60182505,1,-1,"  assembly comparison","SIX1"]
["chr14",64285406,64285409,3,-1,"  assembly comparison","SPTB"]
["chr14",75517534,75517535,1,-1,"  assembly comparison","TGFB3"]
["chr14",87469640,87469643,3,-1,"  assembly comparison","GALC"]
["chr14",91596366,91596368,2,-1,"  assembly comparison","ATXN3"]
["chr15",20599834,20599836,2,-1,"  assembly comparison","NIPA1"]
["chr15",22971183,22981886,10704,-1,"  split read","SNRPN"]
["chr15",23156327,23162501,3764,-1,"  mate pair","UBE3A"]
["chr15",32868986,32868987,1,-1,"  assembly comparison","ACTC1"]
["chr15",61150454,61150459,5,-1,"  assembly comparison","TPM1"]
["chr15",66286531,66286532,1,-1,"  assembly comparison","CLN6"]
["chr15",66287387,66287391,4,-1,"  assembly comparison","CLN6"]
["chr15",69892986,69892987,1,-1,"  assembly comparison","NR2E3"]
["chr15",69897443,69897446,3,-1,"  assembly comparison","NR2E3"]
["chr15",71401172,71401173,1,-1,"  assembly comparison","HCN4"]
["chr15",71401762,71401764,2,-1,"  assembly comparison","HCN4"]
["chr15",72282609,72282611,2,-1,"  assembly comparison","STRA6"]
["chr15",72966353,72974998,4754,-1,"  mate pair","MPI"]
["chr15",87199999,87200113,114,-1,"  assembly comparison","ACAN"]
["chr15",87200134,87200191,57,-1,"  assembly comparison","ACAN"]
["chr15",88121138,88121149,12,-1,"  split read","MESP2"]
["chr15",97318610,97318612,2,-1,"  assembly comparison","IGF1R"]
["chr15",97319461,97319462,1,-1,"  assembly comparison","IGF1R"]
["chr15",97320619,97320620,1,-1,"  assembly comparison","IGF1R"]
["chr15",97320734,97320736,2,-1,"  assembly comparison","IGF1R"]
["chr15",97323982,97323983,1,-1,"  assembly comparison","IGF1R"]
["chr16",2074985,2074988,3,-1,"  assembly comparison","TSC2"]
["chr16",2087486,2110716,23231,-1,"  NimbleGen 42M","PKD1"]
["chr16",3232688,3232691,3,-1,"  assembly comparison","MEFV"]
["chr16",3716428,3716441,13,-1,"  assembly comparison","CREBBP"]
["chr16",11586519,11594789,2645,-1,"  mate pair","LITAF"]
["chr16",13952280,13952281,1,-1,"  assembly comparison","ERCC4"]
["chr16",13953657,13953658,1,-1,"  assembly comparison","ERCC4"]
["chr16",30676003,30676010,7,-1,"  assembly comparison","PHKG2"]
["chr16",49727943,49727944,1,-1,"  assembly comparison","SALL1"]
["chr16",56474216,56474217,1,-1,"  assembly comparison","CNGB1"]
["chr16",67273862,67278219,3242,-1,"  mate pair","CDH3"]
["chr16",74066813,74066815,2,-1,"  assembly comparison","CHST6"]
["chr16",74068160,74068161,1,-1,"  assembly comparison","CHST6"]
["chr16",78186049,78186050,1,-1,"  assembly comparison","MAF"]
["chr16",78189158,78189159,1,-1,"  assembly comparison","MAF"]
["chr16",78191329,78191332,3,-1,"  assembly comparison","MAF"]
["chr16",86274627,86282833,5448,-1,"  mate pair","JPH3"]
["chr16",87034110,87034111,1,-1,"  assembly comparison","ZNF469"]
["chr16",88331838,88331839,1,-1,"  assembly comparison","FANCA"]
["chr17",1604738,1604739,1,-1,"  assembly comparison","SERPINF2"]
["chr17",3511587,3511589,2,-1,"  assembly comparison","CTNS"]
["chr17",3512354,3512355,1,-1,"  assembly comparison","CTNS"]
["chr17",6269366,6269368,2,-1,"  assembly comparison","AIPL1"]
["chr17",6295828,6295829,1,-1,"  assembly comparison","PITPNM3"]
["chr17",6297065,6297067,2,-1,"  assembly comparison","PITPNM3"]
["chr17",6297083,6297087,4,-1,"  assembly comparison","PITPNM3"]
["chr17",7301338,7301339,1,-1,"  assembly comparison","CHRNB1"]
["chr17",7519451,7519454,3,-1,"  assembly comparison","TP53"]
["chr17",17077658,17088610,5053,-1,"  mate pair","FLCN"]
["chr17",19521355,19521357,2,-1,"  assembly comparison","ALDH3A2"]
["chr17",26578648,26587424,8777,-1,"  NimbleGen 42M","NF1"]
["chr17",26582336,26584220,1885,-1,"  Agilent 24M","NF1"]
["chr17",26611172,26613387,2216,-1,"  Agilent 24M","NF1"]
["chr17",30926031,30926035,4,-1,"  assembly comparison","PEX12"]
["chr17",35078120,35078121,1,-1,"  assembly comparison","PNMT"]
["chr17",35767184,35767185,1,-1,"  assembly comparison","RARA"]
["chr17",37718944,37718945,1,-1,"  assembly comparison","STAT3"]
["chr17",38318521,38318529,8,-1,"  assembly comparison","G6PC"]
["chr17",39681743,39681746,3,-1,"  assembly comparison","SLC4A1"]
["chr17",40348288,40355783,5144,-1,"  mate pair","GFAP"]
["chr17",41460462,41460463,1,-1,"  assembly comparison","MAPT"]
["chr17",43374227,43384456,3710,-1,"  mate pair","PNPO"]
["chr17",52027415,52027417,2,-1,"  assembly comparison","NOG"]
["chr17",65685763,65685764,1,-1,"  assembly comparison","KCNJ2"]
["chr17",65686833,65686834,1,-1,"  assembly comparison","KCNJ2"]
["chr17",67634111,67634112,1,-1,"  assembly comparison","SOX9"]
["chr17",70425391,70425392,1,-1,"  assembly comparison","USH1G"]
["chr17",73000526,73001251,726,-1,"  NimbleGen 42M","2010-09-09"]
["chr17",78381160,78381164,4,-1,"  assembly comparison","ZNF750"]
["chr18",3448202,3448203,1,-1,"  assembly comparison","TGIF1"]
["chr18",13873615,13873631,16,-1,"  assembly comparison","MC2R"]
["chr18",30700952,30700953,1,-1,"  assembly comparison","DTNA"]
["chr18",46864372,46864387,16,-1,"  assembly comparison","SMAD4"]
["chr18",53464708,53464709,1,-1,"  assembly comparison","ATP8B1"]
["chr18",59146582,59146583,1,-1,"  assembly comparison","KDSR"]
["chr18",59149479,59149481,2,-1,"  assembly comparison","KDSR"]
["chr18",75576175,75576178,3,-1,"  assembly comparison","CTDP1"]
["chr18",75584506,75594314,3466,-1,"  mate pair","CTDP1"]
["chr19",3582638,3582640,2,-1,"  assembly comparison","PIP5K1C"]
["chr19",3875782,3875783,1,-1,"  assembly comparison","ATCAY"]
["chr19",7065082,7065083,1,-1,"  assembly comparison","INSR"]
["chr19",7067730,7067732,2,-1,"  assembly comparison","INSR"]
["chr19",7736868,7737006,138,-1,"  assembly comparison","CLEC4M"]
["chr19",8551329,8551330,1,-1,"  assembly comparison","ADAMTS10"]
["chr19",11419366,11419372,6,-1,"  assembly comparison","PRKCSH"]
["chr19",13178498,13178501,3,-1,"  assembly comparison","CACNA1A"]
["chr19",15131787,15132235,449,-1,"  Agilent 24M","NOTCH3"]
["chr19",15508413,15517400,4084,-1,"  mate pair","CYP4F22"]
["chr19",17798326,17798330,4,-1,"  assembly comparison","JAK3"]
["chr19",43912570,43912571,1,-1,"  assembly comparison","ACTN4"]
["chr19",50367652,50376708,4290,-1,"  mate pair","BLOC1S3"]
["chr19",50723926,50723927,1,-1,"  assembly comparison","OPA3"]
["chr19",50965319,50965337,18,-1,"  assembly comparison","DMPK"]
["chr19",50965337,50965364,27,-1,"  assembly comparison","DMPK"]
["chr19",53035349,53035352,3,-1,"  assembly comparison","CRX"]
["chr19",53036935,53036936,1,-1,"  assembly comparison","CRX"]
["chr19",55098024,55103283,5454,-1,"  mate pair","NUP62"]
["chr19",55102625,55102627,2,-1,"  assembly comparison","NUP62"]
["chr19",56101789,56101856,67,-1,"  assembly comparison","KLK4"]
["chr19",58988790,58988791,1,-1,"  assembly comparison","NLRP12"]
["chr19",62434306,62434319,14,-1,"  split read","AURKC"]
["chr2",11884113,11884114,1,-1,"  assembly comparison","LPIN1"]
["chr2",26554326,26554328,2,-1,"  assembly comparison","OTOF"]
["chr2",31411621,31411623,2,-1,"  assembly comparison","XDH"]
["chr2",39064864,39064865,1,-1,"  assembly comparison","SOS1"]
["chr2",46465841,46465843,2,-1,"  assembly comparison","EPAS1"]
["chr2",73466575,73466578,3,-1,"  assembly comparison","ALMS1"]
["chr2",86865910,86865912,2,-1,"  assembly comparison","CD8A"]
["chr2",88707866,88707869,3,-1,"  assembly comparison","EIF2AK3"]
["chr2",110204375,111169574,959066,-1,"  mate pair","NPHP1/BUB1"]
["chr2",152400484,152410028,9011,-1,"  mate pair","CACNB4"]
["chr2",165858793,165858794,1,-1,"  assembly comparison","SCN2A"]
["chr2",166760801,166760812,11,-1,"  assembly comparison","SCN9A"]
["chr2",169808218,169820016,6240,-1,"  mate pair","LRP2"]
["chr2",170070715,170070764,49,-1,"  assembly comparison","BBS5"]
["chr2",176692409,176692415,6,-1,"  assembly comparison","HOXD10"]
["chr2",178113064,178113068,4,-1,"  assembly comparison","AGPS"]
["chr2",178199888,178199889,1,-1,"  assembly comparison","PDE11A"]
["chr2",178200017,178200026,9,-1,"  assembly comparison","PDE11A"]
["chr2",189585543,189585545,2,-1,"  assembly comparison","COL3A1"]
["chr2",199844539,199844540,1,-1,"  assembly comparison","SATB2"]
["chr2",208171455,208171457,2,-1,"  assembly comparison","CREB1"]
["chr2",208177462,208177466,4,-1,"  assembly comparison","CREB1"]
["chr2",208931368,208931369,1,-1,"  assembly comparison","PIP5K3"]
["chr2",215504547,215504551,4,-1,"  assembly comparison","ABCA12"]
["chr2",219006455,219014796,3410,-1,"  mate pair","VIL1"]
["chr2",222866897,222866898,1,-1,"  assembly comparison","PAX3"]
["chr2",233420470,233420473,3,-1,"  assembly comparison","GIGYF2"]
["chr2",242351131,242362444,3855,-1,"  mate pair","D2HGDH"]
["chr20",887793,887834,42,-1,"  split read","RSPO4"]
["chr20",10566939,10566940,1,-1,"  assembly comparison","JAG1"]
["chr20",10567659,10567660,1,-1,"  assembly comparison","JAG1"]
["chr20",43953667,43953670,3,-1,"  assembly comparison","CTSA"]
["chr20",55574623,55574624,2,-1,"  assembly comparison","PCK1"]
["chr20",55574657,55574659,2,-1,"  assembly comparison","PCK1"]
["chr20",61446290,61446291,1,-1,"  assembly comparison","CHRNA4"]
["chr21",45172999,45173003,4,-1,"  assembly comparison","ITGB2"]
["chr21",46248702,46248715,13,-1,"  assembly comparison","COL6A1"]
["chr21",46355933,46355994,62,-1,"  split read","COL6A2"]
["chr21",46624205,46629247,3451,-1,"  mate pair","PCNT"]
["chr22",19572638,19572646,8,-1,"  assembly comparison","SNAP29"]
["chr22",25177961,25177971,10,-1,"  assembly comparison","HPS4"]
["chr22",31587175,31587176,1,-1,"  assembly comparison","TIMP3"]
["chr22",36449737,36449884,147,-1,"  assembly comparison","TRIOBP"]
["chr22",36450437,36450439,3,-1,"  assembly comparison","TRIOBP"]
["chr22",36499887,36499891,4,-1,"  assembly comparison","TRIOBP"]
["chr22",37970683,37970690,7,-1,"  assembly comparison","PDGFB"]
["chr22",39905483,39905484,1,-1,"  assembly comparison","EP300"]
["chr22",39905831,39905842,12,-1,"  split read","EP300"]
["chr22",39905852,39905874,22,-1,"  assembly comparison","EP300"]
["chr22",40784449,40784450,1,-1,"  assembly comparison","NAGA"]
["chr22",48841315,48841365,51,-1,"  split read","MLC1"]
["chr3",8763365,8763366,1,-1,"  assembly comparison","CAV3"]
["chr3",10342224,10342225,1,-1,"  assembly comparison","ATP2B2"]
["chr3",14172876,14172877,1,-1,"  assembly comparison","XPC"]
["chr3",14174970,14174971,1,-1,"  assembly comparison","XPC"]
["chr3",14175042,14175043,1,-1,"  assembly comparison","XPC"]
["chr3",38501172,38501174,2,-1,"  assembly comparison","ACVR2B"]
["chr3",38502185,38502188,3,-1,"  assembly comparison","ACVR2B"]
["chr3",38509263,38509299,36,-1,"  assembly comparison","ACVR2B"]
["chr3",46598020,46598021,1,-1,"  assembly comparison","TDGF1"]
["chr3",46726078,46726081,3,-1,"  assembly comparison","TMIE"]
["chr3",49370677,49370680,3,-1,"  assembly comparison","GPX1"]
["chr3",49370694,49370697,3,-1,"  assembly comparison","GPX1"]
["chr3",50266314,50277245,5202,-1,"  mate pair","GNAI2"]
["chr3",58388392,58388394,2,-1,"  assembly comparison","PDHB"]
["chr3",95205239,95205240,1,-1,"  assembly comparison","ARL13B"]
["chr3",126428266,126428267,1,-1,"  assembly comparison","ZNF148"]
["chr3",126430753,126430754,1,-1,"  assembly comparison","ZNF148"]
["chr3",126433875,126433876,1,-1,"  assembly comparison","ZNF148"]
["chr3",130370161,130370162,1,-1,"  assembly comparison","CNBP"]
["chr3",152128135,152128137,2,-1,"  assembly comparison","CLRN1"]
["chr3",170864004,170864012,8,-1,"  assembly comparison","MDS1"]
["chr3",180401931,180402892,962,-1,"  Agilent 24M","PIK3CA"]
["chr3",191508312,191508313,1,-1,"  assembly comparison","CLDN1"]
["chr4",608112,618837,5372,-1,"  mate pair","PDE6B"]
["chr4",1778942,1778944,2,-1,"  assembly comparison","FGFR3"]
["chr4",3046457,3046460,3,-1,"  assembly comparison","HTT"]
["chr4",3046464,3046466,3,-1,"  assembly comparison","HTT"]
["chr4",4916180,4916187,7,-1,"  assembly comparison","MSX1"]
["chr4",4916215,4916216,1,-1,"  assembly comparison","MSX1"]
["chr4",5864412,5864470,58,-1,"  assembly comparison","EVC"]
["chr4",5865509,5865510,1,-1,"  assembly comparison","EVC"]
["chr4",6328452,6344147,6886,-1,"  mate pair","WFS1"]
["chr4",23406047,23406051,4,-1,"  assembly comparison","PPARGC1A"]
["chr4",25289424,25289426,2,-1,"  assembly comparison","SLC34A2"]
["chr4",54857304,54857307,3,-1,"  assembly comparison","PDGFRA"]
["chr4",68304189,68304190,1,-1,"  assembly comparison","GNRHR"]
["chr4",71528041,71721022,184150,-1,"  mate pair","ENAM"]
["chr4",72654810,72654839,30,-1,"  split read","SLC4A4"]
["chr4",77312788,77321202,4694,-1,"  mate pair","SCARB2"]
["chr4",104028757,104028758,1,-1,"  assembly comparison","CISD2"]
["chr4",111763460,111763461,1,-1,"  assembly comparison","PITX2"]
["chr4",122965739,122965740,1,-1,"  assembly comparison","BBS7"]
["chr4",148684427,148684428,1,-1,"  assembly comparison","EDNRA"]
["chr4",149221472,149221473,1,-1,"  assembly comparison","NR3C2"]
["chr5",271434,271435,2,-1,"  assembly comparison","SDHA"]
["chr5",1275216,1275218,2,-1,"  assembly comparison","SLC6A19"]
["chr5",7953996,7953997,1,-1,"  assembly comparison","MTRR"]
["chr5",11025901,11025902,1,-1,"  assembly comparison","CTNND2"]
["chr5",14759025,14759026,1,-1,"  assembly comparison","ANKH"]
["chr5",14760415,14760416,1,-1,"  assembly comparison","ANKH"]
["chr5",14762004,14762005,1,-1,"  assembly comparison","ANKH"]
["chr5",38512381,38512382,1,-1,"  assembly comparison","LIFR"]
["chr5",42664117,42666828,2712,-1,"  NimbleGen 42M","GHR"]
["chr5",42756780,42756783,3,-1,"  assembly comparison","GHR"]
["chr5",70989017,70989018,1,-1,"  assembly comparison","MCCC2"]
["chr5",78145555,78147625,2071,-1,"  split read","ARSB"]
["chr5",79958429,79958433,4,-1,"  assembly comparison","DHFR"]
["chr5",79958448,79958449,1,-1,"  assembly comparison","DHFR"]
["chr5",82912909,82912917,8,-1,"  assembly comparison","VCAN"]
["chr5",82913556,82913557,1,-1,"  assembly comparison","VCAN"]
["chr5",89985090,89985091,1,-1,"  assembly comparison","GPR98"]
["chr5",95753644,95753645,1,-1,"  assembly comparison","PCSK1"]
["chr5",112387646,112387647,1,-1,"  assembly comparison","MCC"]
["chr5",112388353,112388358,5,-1,"  assembly comparison","MCC"]
["chr5",125906860,125906861,1,-1,"  assembly comparison","ALDH7A1"]
["chr5",131757954,131757955,1,-1,"  assembly comparison","SLC22A5"]
["chr5",131845826,131845827,1,-1,"  assembly comparison","IRF1"]
["chr5",131846276,131846277,1,-1,"  assembly comparison","IRF1"]
["chr5",131846672,131846673,1,-1,"  assembly comparison","IRF1"]
["chr5",132232347,132232348,1,-1,"  assembly comparison","UQCRQ"]
["chr5",133735156,133735157,1,-1,"  assembly comparison","UBE2B"]
["chr5",142583876,142583877,1,-1,"  assembly comparison","ARHGAP26"]
["chr5",142586260,142586264,4,-1,"  assembly comparison","ARHGAP26"]
["chr5",148347610,148347612,2,-1,"  assembly comparison","SH3TC2"]
["chr5",148363626,148363627,1,-1,"  assembly comparison","SH3TC2"]
["chr5",149344440,149344441,1,-1,"  assembly comparison","SLC26A2"]
["chr5",150627580,150627581,1,-1,"  assembly comparison","GM2A"]
["chr5",150629921,150629925,4,-1,"  assembly comparison","GM2A"]
["chr5",158674795,158674796,1,-1,"  assembly comparison","IL12B"]
["chr5",161515071,161515073,2,-1,"  assembly comparison","GABRG2"]
["chr5",176489642,176500720,4853,-1,"  mate pair","NSD1"]
["chr5",176659676,176659677,1,-1,"  assembly comparison","NSD1"]
["chr5",177351846,177351847,1,-1,"  assembly comparison","PROP1"]
["chr5",179165682,179173343,4558,-1,"  mate pair","SQSTM1"]
["chr5",179196373,179196375,2,-1,"  assembly comparison","SQSTM1"]
["chr5",179975856,179978027,2172,-1,"  NimbleGen 42M","FLT4"]
["chr6",356004,356005,1,-1,"  assembly comparison","IRF4"]
["chr6",31029406,31029407,1,-1,"  assembly comparison","DPCR1"]
["chr6",31191779,31191782,3,-1,"  assembly comparison","CDSN"]
["chr6",32903482,32903659,177,-1,"  assembly comparison","TAP2"]
["chr6",33376415,33376423,8,-1,"  assembly comparison","TAPBP"]
["chr6",33376737,33376738,1,-1,"  assembly comparison","TAPBP"]
["chr6",35899178,35899180,2,-1,"  assembly comparison","LHFPL5"]
["chr6",42773541,42773542,1,-1,"  assembly comparison","PRPH2"]
["chr6",43039610,43039614,4,-1,"  assembly comparison","PEX6"]
["chr6",45623627,45623628,1,-1,"  assembly comparison","RUNX2"]
["chr6",45625731,45625732,1,-1,"  assembly comparison","RUNX2"]
["chr6",46780165,46780183,18,-1,"  assembly comparison","PLA2G7"]
["chr6",47700288,47700289,1,-1,"  assembly comparison","CD2AP"]
["chr6",50921860,50921861,1,-1,"  assembly comparison","TFAP2B"]
["chr6",52466142,52466143,1,-1,"  assembly comparison","EFHC1"]
["chr6",53470771,53470772,1,-1,"  assembly comparison","GCLC"]
["chr6",53471451,53471455,4,-1,"  assembly comparison","GCLC"]
["chr6",76684330,76684331,1,-1,"  assembly comparison","MYO6"]
["chr6",81110381,81110382,1,-1,"  assembly comparison","BCKDHB"]
["chr6",81110449,81110452,3,-1,"  assembly comparison","BCKDHB"]
["chr6",81110798,81110800,2,-1,"  assembly comparison","BCKDHB"]
["chr6",88275510,88275511,1,-1,"  assembly comparison","SLC35A1"]
["chr6",107612504,107623864,3450,-1,"  mate pair","PDSS2"]
["chr6",108296132,108296133,1,-1,"  assembly comparison","SEC63"]
["chr6",108296493,108296497,4,-1,"  assembly comparison","SEC63"]
["chr6",125186242,125186244,2,-1,"  assembly comparison","NKAIN2"]
["chr6",129879377,129879380,3,-1,"  assembly comparison","LAMA2"]
["chr6",132254597,132254600,3,-1,"  assembly comparison","ENPP1"]
["chr6",132256809,132256812,3,-1,"  assembly comparison","ENPP1"]
["chr6",133891941,133891942,1,-1,"  assembly comparison","EYA4"]
["chr6",145998073,145998074,1,-1,"  assembly comparison","EPM2A"]
["chr6",150761526,150761527,1,-1,"  assembly comparison","IYD"]
["chr6",150766783,150766784,1,-1,"  assembly comparison","IYD"]
["chr6",152463878,152463879,1,-1,"  assembly comparison","ESR1"]
["chr6",160413658,160419699,6250,-1,"  mate pair","IGF2R"]
["chr6",170712991,170713000,9,-1,"  assembly comparison","TBP"]
["chr7",19122027,19122028,1,-1,"  assembly comparison","TWIST1"]
["chr7",21907909,21907916,7,-1,"  assembly comparison","DNAH11"]
["chr7",30640051,30640052,1,-1,"  assembly comparison","GARS"]
["chr7",50437107,50437108,1,-1,"  assembly comparison","IKZF1"]
["chr7",56046728,56046729,1,-1,"  assembly comparison","PSPH"]
["chr7",56046790,56046791,1,-1,"  assembly comparison","PSPH"]
["chr7",80146094,80146095,1,-1,"  assembly comparison","CD36"]
["chr7",92567914,92567915,1,-1,"  assembly comparison","SAMD9"]
["chr7",107145068,107145069,1,-1,"  assembly comparison","SLC26A4"]
["chr7",107145069,107145071,2,-1,"  assembly comparison","SLC26A4"]
["chr7",114117435,114117437,2,-1,"  assembly comparison","FOXP2"]
["chr7",117094530,117094531,1,-1,"  assembly comparison","CFTR"]
["chr7",147744561,147744566,5,-1,"  assembly comparison","CNTNAP2"]
["chr7",147746575,147746577,2,-1,"  assembly comparison","CNTNAP2"]
["chr8",1759581,1759582,1,-1,"  assembly comparison","ARHGEF10"]
["chr8",1829331,1831172,4311,-1,"  mate pair","ARHGEF10"]
["chr8",6493419,6493423,4,-1,"  assembly comparison","MCPH1"]
["chr8",8680673,8680674,1,-1,"  assembly comparison","MFHAS1"]
["chr8",16041658,16041676,18,-1,"  assembly comparison","MSR1"]
["chr8",17469335,17479613,3271,-1,"  mate pair","PDGFRL"]
["chr8",17930108,17930111,3,-1,"  assembly comparison","PCM1"]
["chr8",17930452,17930456,4,-1,"  assembly comparison","PCM1"]
["chr8",20149146,20149147,1,-1,"  assembly comparison","LZTS1"]
["chr8",24866987,24866988,1,-1,"  assembly comparison","NEFL"]
["chr8",41631827,41631829,2,-1,"  assembly comparison","ANK1"]
["chr8",57237484,57237485,1,-1,"  assembly comparison","PLAG1"]
["chr8",75441888,75441889,1,-1,"  assembly comparison","GDAP1"]
["chr8",77939403,77939404,1,-1,"  assembly comparison","ZFHX4"]
["chr8",87656237,87656239,2,-1,"  assembly comparison","CNGB3"]
["chr8",97311309,97311311,2,-1,"  assembly comparison","UQCRB"]
["chr8",100957317,100957320,3,-1,"  assembly comparison","VPS13B"]
["chr8",100957503,100957506,3,-1,"  assembly comparison","VPS13B"]
["chr8",100957772,100957775,3,-1,"  assembly comparison","VPS13B"]
["chr8",143740884,143740885,1,-1,"  assembly comparison","JRK"]
["chr8",143741427,143741431,4,-1,"  assembly comparison","JRK"]
["chr8",143743095,143743097,2,-1,"  assembly comparison","JRK"]
["chr8",143956174,143994207,38034,-1,"  split read","CYP11B1/CYP11B2"]
["chr8",145066608,145066609,1,-1,"  assembly comparison","PLEC1"]
["chr8",145709576,145709577,1,-1,"  assembly comparison","RECQL4"]
["chr9",958528,958529,1,-1,"  assembly comparison","DMRT1"]
["chr9",3814935,3814937,2,-1,"  assembly comparison","GLIS3"]
["chr9",12699479,12699483,4,-1,"  assembly comparison","TYRP1"]
["chr9",12699653,12699657,4,-1,"  assembly comparison","TYRP1"]
["chr9",27179804,27186618,3036,-1,"  mate pair","TEK"]
["chr9",36206565,36206904,339,-1,"  assembly comparison","GNE"]
["chr9",70877589,70877592,3,-1,"  assembly comparison","FXN"]
["chr9",76528560,76528562,2,-1,"  assembly comparison","TRPM6"]
["chr9",96405242,96405243,1,-1,"  assembly comparison","FBP1"]
["chr9",97309240,97309241,1,-1,"  assembly comparison","PTCH1"]
["chr9",99656548,99656554,6,-1,"  assembly comparison","FOXE1"]
["chr9",101629392,101629394,2,-1,"  assembly comparison","NR4A3"]
["chr9",102103241,102103244,4,-1,"  assembly comparison","INVS"]
["chr9",103163357,103163359,2,-1,"  assembly comparison","BAAT"]
["chr9",126284685,126284686,1,-1,"  assembly comparison","NR5A1"]
["chr9",128499939,128499944,5,-1,"  assembly comparison","LMX1B"]
["chr9",128500936,128500937,1,-1,"  assembly comparison","LMX1B"]
["chr9",130719163,130719165,2,-1,"  assembly comparison","LRRC8A"]
["chr9",130912677,130912683,6,-1,"  assembly comparison","CRAT"]
["chr9",131615247,131615248,1,-1,"  assembly comparison","TOR1A"]
["chr9",131615657,131615658,1,-1,"  assembly comparison","TOR1A"]
["chr9",132339927,132347778,3988,-1,"  mate pair","ASS1"]
["chr9",134761155,134761156,1,-1,"  assembly comparison","TSC1"]
["chr9",136875059,136875063,4,-1,"  assembly comparison","COL5A1"]
["chrX",38305728,38305731,3,-1,"  assembly comparison","TSPAN7"]
["chrX",48769784,48776350,3374,-1,"  mate pair","TFE3"]
["chrX",50351465,50351473,8,-1,"  assembly comparison","SHROOM4"]
["chrX",66681907,66681952,45,-1,"  assembly comparison","AR"]
["chrX",99551385,99551394,9,-1,"  assembly comparison","PCDH19"]
["chrX",119455308,119455309,1,-1,"  assembly comparison","LAMP2"]
["chrX",153293254,153293255,1,-1,"  assembly comparison","TAZ"]