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[]
["Additional data file 4. Overview of rearrangement breakpoints detected in colorectal tumor samples in this study"]
[]
["patient","chr1","s1","e1","chr2","s2","e2","libs","ori","count","class","sample","breakpoint","breakpoint characteristics","gene overlap breakpoints"]
["patient 1",2,31723836,31724688,2,31728112,31729392,"P1_Colon_Normal(0)P1_Colon_Tumor(5)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TH(4)th(1)",5,"deletion","not determined",null,null,"NoGene"]
["patient 1",2,92296807,92300718,6,61902091,61905238,"P1_Colon_Normal(0)P1_Colon_Tumor(5)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TT(2)tt(3)",5,"interchromosomal","not determined",null,null,"NoGene"]
["patient 1",2,127550647,127552370,2,150228902,150230976,"P1_Colon_Normal(0)P1_Colon_Tumor(4)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TH(2)th(2)",4,"deletion","prim+ meta","2: 127552363-127552652 -> 2: 150228844-150228945","microhomology GTA","LYPD6"]
["patient 1",3,30413558,30413724,6,58778533,58779075,"P1_Colon_Normal(0)P1_Colon_Tumor(7)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TT(3)tt(4)",7,"interchromosomal","prim","3: 30412934-30413531  ->  6: 58777084-58776543","not precise","NoGene"]
["patient 1",3,60289022,60291605,3,60683255,60685547,"P1_Colon_Normal(0)P1_Colon_Tumor(5)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TH(1)th(4)",5,"deletion","prim","3: 60291554-60291781 -> 3: 60683237-60683298","blunt","FHIT_FHIT"]
["patient 1",4,63174,63950,4,130708,131357,"P1_Colon_Normal(0)P1_Colon_Tumor(6)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TH(5)th(1)",6,"deletion","not determined",null,null,"Z95704.2_ZNF595_Z95704.1_ZNF718_AC118278.1"]
["patient 1",5,18617213,18619385,5,18634562,18636314,"P1_Colon_Normal(0)P1_Colon_Tumor(5)P1_Liver_Normal(0)P1_Liver_Tumor(2)","HT(3)ht(4)",7,"tandem duplication","prim + meta","5: 18617239-18617204 -> 5: 18636945-18636467","microhomology G","NoGene"]
["patient 1",5,83668804,83670453,5,83691190,83692744,"P1_Colon_Normal(0)P1_Colon_Tumor(5)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TH(3)th(2)",5,"deletion","prim","5: 83670394-83670661 -> 5: 83690383-83690673","insertion of 10bp","EDIL3_CTD-2269F5.1"]
["patient 1",7,111063176,111064157,7,111078349,111079612,"P1_Colon_Normal(0)P1_Colon_Tumor(5)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TH(5)",5,"deletion","prim","7: 111064276-111064414 -> 7: 111064433-111064464","insertion of CTATACCGCCCCGTAAAAC","IMMP2L_IMMP2L"]
["patient 1",10,53184024,53185600,10,53262627,53263339,"P1_Colon_Normal(0)P1_Colon_Tumor(3)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TH(3)",3,"deletion","prim","10: 53186418-53186866 -> 10: 53262474-53262676","blunt","PRKG1_PRKG1"]
["patient 1",13,23098059,23099917,13,78198552,78200182,"P1_Colon_Normal(0)P1_Colon_Tumor(3)P1_Liver_Normal(0)P1_Liver_Tumor(0)","tt(3)",3,"inverted","prim + meta","13: 78200893-78200181 ","only one flank found","SCEL_Y_RNA.492"]
["patient 1",13,35646108,35647601,13,82604572,82606079,"P1_Colon_Normal(0)P1_Colon_Tumor(7)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TH(3)th(4)",7,"deletion","prim + meta","13: 35647540-35647959 -> 82603909-82604328","insertion of AGTCATTTATACTCATA","NBEA"]
["patient 1",13,35687182,35688469,22,36193835,36195196,"P1_Colon_Normal(0)P1_Colon_Tumor(4)P1_Liver_Normal(0)P1_Liver_Tumor(1)","TT(1)tt(4)",5,"interchromosomal","prim + meta","13: 35688444-35688637 -> 22: 36196029-36195555","insertion of ATATATATGAGACATAATTCATTTATACTCATACTCATTTTATTAATTTGACTCC ","NBEA_RBFOX2"]
["patient 1",13,36611703,36613693,22,19236041,19237588,"P1_Colon_Normal(0)P1_Colon_Tumor(5)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TH(2)th(3)",5,"interchromosomal","prim + meta","13:36613729-36614081 ->22: 19235822-19236055  ","not precise","DCLK1_L77569.1_CLTCL1_SNORA15.3"]
["patient 1",13,59999473,60000660,13,105967363,105969749,"P1_Colon_Normal(0)P1_Colon_Tumor(5)P1_Liver_Normal(0)P1_Liver_Tumor(0)","HH(4)hh(1)",5,"inverted","prim + meta","13: 59999558-59999245 -> 13: 105967112-105967365","insertion of  TGG ","NoGene"]
["patient 1",13,68630924,68632686,13,77812859,77814463,"P1_Colon_Normal(0)P1_Colon_Tumor(5)P1_Liver_Normal(0)P1_Liver_Tumor(2)","TT(3)tt(4)",7,"inverted","prim + meta","13: 77814387-77814725 -> 13: 68633329-68632849 ","microhomology AACA","MYCBP2"]
["patient 1",13,68634580,68635862,13,90956865,90958345,"P1_Colon_Normal(0)P1_Colon_Tumor(3)P1_Liver_Normal(0)P1_Liver_Tumor(0)","HH(1)hh(2)",3,"inverted","prim + meta","13: 68634090-68633979 -> 13: 90956353-90956888","insertion of GCATATTTTAATATTTATTTATTTATTATAAAAATTTAATAGT","NoGene"]
["patient 1",13,71101674,71103995,13,90414536,90417027,"P1_Colon_Normal(0)P1_Colon_Tumor(7)P1_Liver_Normal(0)P1_Liver_Tumor(0)","HH(5)hh(2)",7,"inverted","prim + meta","13: 71101670-71101346 -> 13: 90414516-90414618","insertion of G","NoGene"]
["patient 1",13,90427666,90429249,13,90442031,90443779,"P1_Colon_Normal(0)P1_Colon_Tumor(7)P1_Liver_Normal(0)P1_Liver_Tumor(0)","HT(6)ht(1)",7,"tandem duplication","prim","13: 90443752-90443999 ->13: 90427249-90427707","insertion of 64 bp TTAATTCCTA... AGGTTTGGGTTTATATTATAATTATTATAATA\nATAATAAATTGGATAATTTAGT\n","NoGene"]
["patient 1",13,90971334,90973021,13,92942702,92944416,"P1_Colon_Normal(0)P1_Colon_Tumor(3)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TT(1)tt(2)",3,"inverted","prim + meta","13: 90973032-90973317 -> 13: 92944545-92944377","insertion of 59 basepairs","GPC5"]
["patient 1",13,101866858,101868336,13,102397259,102398969,"P1_Colon_Normal(0)P1_Colon_Tumor(10)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TT(3)tt(7)",10,"inverted","prim + meta","13: 101868689-101869377 -> 13: 102399025-102398931 ","insertion of A","NALCN_FGF14"]
["patient 1",13,102099102,102100848,13,104361664,104364526,"P1_Colon_Normal(0)P1_Colon_Tumor(3)P1_Liver_Normal(0)P1_Liver_Tumor(0)","HT(1)ht(2)",3,"tandem duplication","prim + meta","13: 102099142-102099104 -> 104364621-104364512 ","insertion of TTTA ","NoGene"]
["patient 1",13,104305099,104307082,13,104349275,104350436,"P1_Colon_Normal(0)P1_Colon_Tumor(6)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TH(2)th(4)",6,"deletion","prim + meta","13: 104307268-104307483 -> 13: 104349006-104349278","insertion of TC","NoGene"]
["patient 1",16,6744233,6746246,16,6848109,6849498,"P1_Colon_Normal(0)P1_Colon_Tumor(6)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TH(5)th(1)",6,"deletion","prim","16: 6746156-6746341 -> 16: 6746343-6746411","insertion of A","NoGene"]
["patient 1",17,20784424,20784934,4,33847085,33848798,"P1_Colon_Normal(0)P1_Colon_Tumor(5)P1_Liver_Normal(0)P1_Liver_Tumor(0)","TT(3)tt(2)",5,"interchromosomal","not determined",null,null,"CCDC144NL_AC090774.1_RP11-79E3.3"]
["patient 1","X",133946999,133948262,"X",133992138,133992828,"P1_Colon_Normal(0)P1_Colon_Tumor(5)P1_Liver_Normal(0)P1_Liver_Tumor(2)","TH(1)th(6)",7,"deletion","prim + meta","X: 133992130-133991490 -> X: 133949073-133948927","not precise","FAM122C"]
["patient 2",1,220598786,220601340,1,220644280,220647321,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(23)","TH(10)th(13)",23,"deletion","prim + meta","1: 220601309-220601524 -> 1: 220644265-220644265","blunt","RP11-410C4.3"]
["patient 2",1,240311776,240313035,1,240369039,240370262,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(17)","TH(5)th(12)",17,"deletion","meta","1: 240313462-240314250","only one flank found","FMN2_FMN2"]
["patient 2",2,78826005,78828550,2,78833174,78835475,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(20)","TH(13)th(7)",20,"deletion","meta","2: 78832886-78833176","only one flank found","AC092660.1"]
["patient 2",2,133117354,133119216,9,96386264,96387363,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(8)","TT(5)tt(3)",8,"interchromosomal","prim + meta","2: 133119971-133120096 -> 9: 96387658-96387386","insertion of CTCATAG","PHF2"]
["patient 2",2,188588543,188590871,2,189190238,189192907,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(34)","TH(15)th(19)",34,"deletion","meta","2: 188590877-188590928 -> 2: 189190025-189190325","blunt","AC068718.1_GULP1"]
["patient 2",2,193906546,193908751,2,193929662,193931350,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(9)","TH(4)th(5)",9,"deletion","meta","2: 193909495-193909559 -> 2: 193929610-193929665","microhomology T","NoGene"]
["patient 2",2,200066179,200067089,2,200069692,200070654,"P2_Colon_Normal(0)P2_Colon_Tumor(2)P2_Liver_Normal(0)P2_Liver_Tumor(2)","TH(5)",4,"deletion","prim + meta","2: 200069418-200069727","only one flank found","NoGene"]
["patient 2",2,209698138,209700156,2,209711056,209713134,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(9)","TH(4)th(5)",9,"deletion","not determined",null,null,"PTH2R_PTH2R"]
["patient 2",2,225433334,225436444,2,226101575,226104026,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(18)","TH(7)th(11)",18,"deletion","prim + meta","2: 225436455-225436664 -> 2: 226101504-226101615","insertion of C","CUL3"]
["patient 2",3,164434776,164436529,3,164895804,164897531,"P2_Colon_Normal(0)P2_Colon_Tumor(4)P2_Liver_Normal(0)P2_Liver_Tumor(0)","TH(4)",4,"deletion","prim","3: 164895794-164895667 -> 3: 164437417-164437064","microhomology T","RP11-71H9.1"]
["patient 2",4,159015458,159017373,4,159100746,159102965,"P2_Colon_Normal(0)P2_Colon_Tumor(1)P2_Liver_Normal(0)P2_Liver_Tumor(12)","TH(8)th(5)",13,"deletion","meta","4:159017335-159017513 -> 4:159100559-159100799","not precise","RP11-597D13.9_RP11-597D13.10"]
["patient 2",4,176027883,176030393,4,176039739,176041980,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(13)","TH(11)th(2)",13,"deletion","meta","4: 176030364-176030480 -> 4: 176039497-176039744","insertion of GTGTTTTCTCTCTCGGGGA","NoGene"]
["patient 2",4,181200393,181202502,4,186689015,186691611,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(19)","TH(12)th(7)",19,"deletion","not determined",null,null,"SORBS2"]
["patient 2",4,184982138,184984009,4,185529800,185532235,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(11)","TH(4)th(7)",11,"deletion","not determined",null,null,"RP11-242J7.1"]
["patient 2",6,21137128,21138772,9,85691170,85692730,"P2_Colon_Normal(0)P2_Colon_Tumor(14)P2_Liver_Normal(0)P2_Liver_Tumor(0)","TT(4)tt(10)",14,"interchromosomal","prim","6: 21138873-21139280 -> 9: 85692801-85692706","blunt","CDKAL1"]
["patient 2",6,21139285,21142294,9,85692836,85695767,"P2_Colon_Normal(0)P2_Colon_Tumor(22)P2_Liver_Normal(0)P2_Liver_Tumor(0)","HH(8)hh(14)",22,"interchromosomal","prim","6: 21139329-21139284 -> 9: 85692799-85692890","microhomology GGG","CDKAL1"]
["patient 2",7,61459824,61460263,7,61557878,61558862,"P2_Colon_Normal(0)P2_Colon_Tumor(2)P2_Liver_Normal(0)P2_Liver_Tumor(7)","TT(6)tt(3)",9,"inverted","not determined",null,null,"NoGene"]
["patient 2",8,2791521,2793942,8,34605630,34608124,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(23)","TH(13)th(10)",23,"deletion","not determined",null,null,"CSMD1"]
["patient 2",8,58130364,58131992,8,58133637,58135241,"P2_Colon_Normal(0)P2_Colon_Tumor(10)P2_Liver_Normal(0)P2_Liver_Tumor(0)","HT(5)ht(5)",10,"tandem duplication","prim"," 8: 58135283-58135616 -> 8: 58129727-58129805","microhomology TGC","RP11-513O17.2_RP11-513O17.2"]
["patient 2",10,83285459,83288407,10,106487049,106489382,"P2_Colon_Normal(0)P2_Colon_Tumor(16)P2_Liver_Normal(0)P2_Liver_Tumor(0)","TH(7)th(9)",16,"deletion","not determined",null,null,"SORCS3"]
["patient 2",11,26987386,26987701,11,27239399,27240459,"P2_Colon_Normal(0)P2_Colon_Tumor(5)P2_Liver_Normal(0)P2_Liver_Tumor(1)","HT(2)ht(4)",6,"tandem duplication","meta","11: 26987387-26987238 -> 11 :27240646-27240457","not precise","RP11-1L12.3"]
["patient 2",12,81010725,81013058,12,81209096,81211717,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(19)","TH(11)th(8)",19,"deletion","meta","12: 81013065-81013156 -> 12: 81209003-81209194","blunt","PTPRQ_LIN7A"]
["patient 2",12,133087701,133089840,12,133272801,133274656,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(5)","TH(3)th(2)",5,"deletion","meta","12: 133090373-133090433 -> 12: 133272600-133272755 ","microhomology ATG","FBRSL1_PGAM5"]
["patient 2",12,133333075,133334688,12,133471456,133473455,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(6)","HH(4)hh(2)",6,"inverted","meta","12: 133333083-133332951","only one flank found","ANKLE2"]
["patient 2",13,72789777,72791108,13,72793457,72794728,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(5)","TH(1)th(4)",5,"deletion","not determined",null,null,"NoGene"]
["patient 2",13,107705127,107707156,13,107883603,107886265,"P2_Colon_Normal(0)P2_Colon_Tumor(1)P2_Liver_Normal(0)P2_Liver_Tumor(24)","TH(12)th(13)",25,"deletion","meta","13: 107707129-107707268 -> 13: 107883121-107883310","blunt","FAM155A"]
["patient 2",13,110979638,110981846,13,111487782,111489926,"P2_Colon_Normal(0)P2_Colon_Tumor(24)P2_Liver_Normal(0)P2_Liver_Tumor(0)","TT(13)tt(11)",24,"inverted","prim","13: 110981823-110982114  -> 13: 111490280-111489892 ","microhomology C","COL4A2"]
["patient 2",13,110982159,110984376,13,111490427,111493014,"P2_Colon_Normal(0)P2_Colon_Tumor(16)P2_Liver_Normal(0)P2_Liver_Tumor(0)","HH(10)hh(6)",16,"inverted","prim","13: 110982238-110982116 -> 13: 111490279-111490425","blunt","COL4A2"]
["patient 2",13,113824744,113827223,13,113831209,113833757,"P2_Colon_Normal(0)P2_Colon_Tumor(1)P2_Liver_Normal(0)P2_Liver_Tumor(13)","TH(8)th(6)",14,"deletion","meta","13: 113827211-113827462 -> 13: 113830804-113831249","not precise","PROZ_PCID2"]
["patient 2",14,58041173,58043880,14,58129348,58131628,"P2_Colon_Normal(0)P2_Colon_Tumor(18)P2_Liver_Normal(0)P2_Liver_Tumor(0)","TH(9)th(9)",18,"deletion","prim","14: 58043846-58043939 -> 14: 58129334-58129485","microhomology GC ","SLC35F4"]
["patient 2",14,104394212,104395855,14,104397915,104402642,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(13)","TH(9)th(4)",13,"deletion","not determined",null,null,"TDRD9_TDRD9"]
["patient 2",18,57588540,57589909,18,57592149,57593389,"P2_Colon_Normal(0)P2_Colon_Tumor(1)P2_Liver_Normal(0)P2_Liver_Tumor(3)","TH(4)",4,"deletion","prim + meta","18: 57589966-57590204 -> 18: 57591627-57592077","not precise","NoGene"]
["patient 2",18,75867347,75868795,18,75914414,75916422,"P2_Colon_Normal(0)P2_Colon_Tumor(0)P2_Liver_Normal(0)P2_Liver_Tumor(15)","HT(6)ht(9)",15,"tandem duplication","prim + meta","18: 75867017-75867327 -> 18: 75916424-75916887","not precise","NoGene"]
["patient 2",19,36066505,36066693,"X",108297375,108297640,"P2_Colon_Normal(0)P2_Colon_Tumor(8)P2_Liver_Normal(0)P2_Liver_Tumor(0)","TH(4)th(4)",8,"interchromosomal","not determined",null,null,"AD000090.1_RN28S1_AL928646.1"]
["patient 2",20,13268687,13269797,20,13289905,13290712,"P2_Colon_Normal(0)P2_Colon_Tumor(6)P2_Liver_Normal(0)P2_Liver_Tumor(0)","TH(5)th(1)",6,"deletion","prim","20: 13269933-13270091 -> 20: 13289927-13290024","not precise","ISM1"]
["patient 3",1,14814740,14817582,1,14834936,14837528,"P3_Colon_Normal(0)P3_Colon_Tumor(7)P3_Liver_Normal(0)P3_Liver_Tumor(0)","HT(2)ht(5)",7,"tandem duplication","prim","1:14837509-14837590->1:14814711-14814775   ","blunt","NoGene"]
["patient 3",1,15031539,15033554,1,15271412,15273710,"P3_Colon_Normal(0)P3_Colon_Tumor(5)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(3)th(2)",5,"deletion","prim","1: 15033567-15033652 -> 1: 15270752-15271413","not precise","RP1-21O18.1_RP1-21O18.1"]
["patient 3",1,17007460,17012944,1,145380296,145382302,"P3_Colon_Normal(0)P3_Colon_Tumor(3)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HT(5)ht(3)",8,"tandem duplication","not determined",null,null,"RP1-163M9.6_AL021920.1_RP11-458D21.1_U1.47"]
["patient 3",1,42674412,42674798,1,42677989,42678368,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(3)th(2)",5,"deletion","not determined",null,null,"FOXJ3_FOXJ3"]
["patient 3",1,56398185,56399154,1,56401798,56402750,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(2)th(5)",7,"deletion","not determined",null,null,"RP11-90C4.2_RP11-90C4.2_RP11-90C4.4"]
["patient 3",1,86004803,86005524,1,144852550,144852992,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(2)th(6)",8,"deletion","not determined",null,null,"DDAH1_PDE4DIP"]
["patient 3",1,120600580,120604241,1,145220210,145223766,"P3_Colon_Normal(0)P3_Colon_Tumor(4)P3_Liver_Normal(0)P3_Liver_Tumor(11)","HH(5)hh(10)",15,"interchromosomal","prim + meta","1:145221360-145220839 -> 1: 120600075-120600596","microhomology 550bp","NOTCH2_NOTCH2NL_RP11-458D21.5"]
["patient 3",1,184934740,184936189,1,184938419,184939911,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(2)th(5)",7,"deletion","not determined",null,null,"FAM129A_FAM129A"]
["patient 3",1,190003041,190004946,1,190550509,190552912,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(1)th(4)",5,"deletion","meta","1: 190005642-190005763 -> 1: 190550382-190550476","blunt"]
["patient 3",1,194448325,194450211,1,194454362,194456448,"P3_Colon_Normal(0)P3_Colon_Tumor(4)P3_Liver_Normal(0)P3_Liver_Tumor(17)","TH(11)th(10)",21,"deletion","prim + meta","1: 194450000-194450211->1: 194454362-194454500","not precise","U6.994"]
["patient 3",1,205634139,205636828,1,224369508,224372694,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(10)","HH(4)hh(6)",10,"inverted","meta","1: 205634107-205634060 -> 1: 224369457-224369606","insertion of AGG","SLC45A3_DEGS1_SNORA72.2"]
["patient 3",1,217751488,217752919,1,217755324,217756636,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(3)th(3)",6,"deletion","not determined",null,null,"GPATCH2_GPATCH2"]
["patient 3",1,217818705,217820595,1,227821378,227823641,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(9)","HT(5)ht(4)",9,"tandem duplication","meta","1: 217818503 ->  217818737 -> 1: 227823787-227823603","not precise","SPATA17_ZNF678"]
["patient 3",1,218631217,218631269,6,86025759,86026723,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(4)th(1)",5,"interchromosomal","not determined",null,null,"NoGene"]
["patient 3",1,223829777,223832364,1,242731112,242733271,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(11)","HH(5)hh(6)",11,"inverted","meta","1: 223829771-223829435 -> 1: 242731109-242731141","not precise","CAPN8_RP11-105I12.1"]
["patient 3",1,226091191,226093747,1,226102532,226105416,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(8)","TH(4)th(4)",8,"deletion","meta","1: 226093809-226094125 -> 1: 226102391-226102580","not precise","LEFTY1_PYCR2_PYCR2"]
["patient 3",1,227777955,227779872,1,227831411,227833614,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HH(3)hh(2)",5,"inverted","not determined",null,null,"ZNF678_ZNF678"]
["patient 3",1,237282826,237285070,1,242015360,242017394,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(10)","HT(3)ht(7)",10,"tandem duplication","meta","1: 237282853-237282232 -> 1: 242017703-242017554 ","blunt","RYR2_7SK.259_EXO1"]
["patient 3",1,239132977,239133973,1,241678276,241678997,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TT(2)tt(3)",5,"inverted","meta","1: 241678998-241679329 -> 1: 239135837-239135549 ","microhomology T","FH"]
["patient 3",1,239542567,239545014,1,242251085,242253680,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(9)","HT(3)ht(6)",9,"tandem duplication","meta","1: 239542577-239542257 -> 1: 242253832-242253671","microhomology GGGA","PLD5"]
["patient 3",1,242179761,242182204,1,249185860,249188200,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(3)th(4)",7,"deletion","not determined",null,null,"NoGene"]
["patient 3",1,242254059,242256013,1,247562224,247564326,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","HT(2)ht(4)",6,"tandem duplication","meta","1: 242254053-242253831 -> 1: 247564596-247564499","blunt","ori - -"]
["patient 3",1,242310129,242312369,1,247196655,247199201,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(4)th(2)",6,"deletion","meta","1: 242312584-242312807 -> 1: 247196586-247196716","blunt","ori + +"]
["patient 3",1,242470743,242472150,1,246115529,246117842,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HH(4)hh(1)",5,"inverted","meta","1: 246114444-246114779","only one flank found","ori +"]
["patient 3",1,244818903,244821597,1,245884999,245887839,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(12)","TT(7)tt(5)",12,"inverted","meta","1: 244821157-244821921","only one flank found","PPPDE1"]
["patient 3",1,246129179,246130030,1,248412508,248413010,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(4)th(1)",5,"deletion","meta","1: 246129000-246130030 -> 1: 248412508-248412700","not precise","SMYD3"]
["patient 3",1,248440300,248443266,1,249183012,249185678,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TT(2)tt(4)",6,"inverted","meta","1: 248443247-248443397 -> 1: 249185781-249185542","blunt","NoGene"]
["patient 3",2,1522850,1523961,2,1526498,1529807,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(1)th(4)",5,"deletion","not determined",null,null,"TPO_TPO"]
["patient 3",2,77396098,77396119,3,131669077,131669796,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TT(3)tt(4)",7,"interchromosomal","not determined",null,null,"LRRTM4_CPNE4"]
["patient 3",2,96517724,96518218,7,151926630,151926973,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(4)","HH(3)hh(2)",5,"interchromosomal","prim + meta","2: 96515938-96515679 -> 7: 151926285-151926613","microhomology TG","AC073995.2_MLL3"]
["patient 3",2,133024098,133032655,11,57222874,57222878,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(6)","HH(1)hh(7)",8,"interchromosomal","not determined",null,null,"NoGene"]
["patient 3",2,133026740,133026781,11,57222871,57222878,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(4)","TT(4)tt(1)",5,"interchromosomal","not determined",null,null,"NoGene"]
["patient 3",2,187428095,187430959,2,187443490,187446066,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(8)","HT(4)ht(4)",8,"tandem duplication","meta","2: 187428146-187428040 -> 2: 187446125-187446071","microhomology TT","NoGene"]
["patient 3",2,206112463,206115319,2,206128771,206131247,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(10)","TH(7)th(3)",10,"deletion","meta","2: 206115323-206115518 -> 2: 206128688-206128806","blunt","PARD3B_AC008171.1_PARD3B"]
["patient 3",2,206313065,206315080,2,206436521,206438788,"P3_Colon_Normal(0)P3_Colon_Tumor(8)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(5)th(3)",8,"deletion","prim","2: 206315242-206315902","only one flank found","PARD3B_PARD3B"]
["patient 3",2,238517686,238517708,"X",111772267,111773705,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HT(2)ht(3)",5,"interchromosomal","not determined",null,null,"NoGene"]
["patient 3",3,60105265,60107651,3,60236915,60239906,"P3_Colon_Normal(0)P3_Colon_Tumor(5)P3_Liver_Normal(0)P3_Liver_Tumor(11)","TH(5)th(11)",16,"deletion","prim + meta","3: 60107623-60107747 -> 3: 60236911-60236971","insertion of T","FHIT_FHIT"]
["patient 3",3,60363597,60366235,3,60558939,60561868,"P3_Colon_Normal(0)P3_Colon_Tumor(13)P3_Liver_Normal(0)P3_Liver_Tumor(15)","TH(15)th(13)",28,"deletion","prim + meta","3: 60558947-60558771 -> 3: 60366363-60366145 ","microhomology GTAG","FHIT_FHIT"]
["patient 3",3,60586434,60587759,3,60589085,60590958,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(7)","HH(3)hh(4)",7,"inverted","meta","3: 60586534-60586434 -> 3: 60589085-60589185","not precise","FHIT_FHIT"]
["patient 3",3,60865696,60867740,3,61119792,61122653,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(11)","TH(6)th(5)",11,"deletion","not determined",null,null,"FHIT_FHIT"]
["patient 3",3,60966536,60969463,3,60989220,60991147,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(8)","HT(6)ht(2)",8,"tandem duplication","meta","3: 60966560-60966373 -> 3: 60991309-60991190","insertion of TGT","ori - -"]
["patient 3",3,64980158,64983807,3,64986193,64989130,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TT(3)tt(2)",5,"inverted","not determined",null,null,"CTD-2230D16.1_CTD-2230D16.1"]
["patient 3",3,82933940,82935519,3,82937585,82939170,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(4)th(3)",7,"deletion","not determined",null,null,"NoGene"]
["patient 3",3,94485781,94487922,3,96365237,96367675,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(11)","TH(7)th(4)",11,"deletion","meta","3: 94487912-94487984 -> 3: 96364204-96364495","microhomology AT","NoGene"]
["patient 3",3,145929303,145930829,3,145932875,145934420,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(5)th(2)",7,"deletion","prim + meta","3: 145931775-145931903 -> 3: 145932215-145932880","blunt","PLSCR4_PLSCR4"]
["patient 3",4,36840296,36841761,4,36843931,36845327,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(2)th(4)",6,"deletion","not determined",null,null,"NoGene"]
["patient 3",4,49633669,49640553,4,49657648,49659602,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HT(1)ht(4)",5,"tandem duplication","not determined",null,null,"AC119751.7"]
["patient 3",4,75323719,75324869,4,75490486,75491808,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(6)","HT(5)ht(2)",7,"tandem duplication","not determined",null,null,"AREG_AC142293.3_AREGB"]
["patient 3",4,86794119,86795550,4,86797752,86799131,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(2)th(5)",7,"deletion","not determined",null,null,"ARHGAP24_ARHGAP24"]
["patient 3",4,91056889,91059360,4,91198612,91200535,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(11)","TH(6)th(6)",12,"deletion","prim + meta","4:91059319-91059623","only one flank found","FAM190A_FAM190A"]
["patient 3",4,91171322,91172476,4,91176555,91178782,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(1)th(4)",5,"deletion","meta","4: 91172429-91172757 -> 4: 91176214-91176513  ","not precise","FAM190A_FAM190A"]
["patient 3",4,91704626,91707577,4,91733560,91736224,"P3_Colon_Normal(0)P3_Colon_Tumor(8)P3_Liver_Normal(0)P3_Liver_Tumor(15)","TH(12)th(11)",23,"deletion","prim + meta","4: 91707083-91707747 -> 4: 91733508-91733657","microhomology CCA","FAM190A_FAM190A"]
["patient 3",4,91855206,91856655,4,91914573,91916366,"P3_Colon_Normal(0)P3_Colon_Tumor(4)P3_Liver_Normal(0)P3_Liver_Tumor(3)","TH(5)th(2)",7,"deletion","meta","4: 91856553-91857171","only one flank found","FAM190A_FAM190A"]
["patient 3",4,130588752,130590112,4,130592746,130593845,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(1)th(4)",5,"deletion","not determined",null,null,"NoGene"]
["patient 3",4,184654896,184655818,4,184659025,184659606,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(4)th(3)",7,"deletion","not determined",null,null,"AC108477.1_AC108477.1"]
["patient 3",4,188133117,188134483,4,188136760,188138335,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(3)th(2)",5,"deletion","not determined",null,null,"RP11-308K2.1"]
["patient 3",4,190190834,190191481,9,66454770,66458090,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HH(4)hh(1)",5,"interchromosomal","not determined",null,null,"RP11-262H14.10_RP11-262H14.1_5S_rRNA.202"]
["patient 3",5,26323330,26323872,5,26326930,26327548,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(3)th(2)",5,"deletion","not determined",null,null,"NoGene"]
["patient 3",5,81007149,81007608,5,81010833,81011306,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(3)th(2)",5,"deletion","not determined",null,null,"SSBP2_SSBP2"]
["patient 3",5,153647671,153649597,5,153794746,153796489,"P3_Colon_Normal(0)P3_Colon_Tumor(5)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(4)th(1)",5,"deletion","prim","5:153649578-153649934 -> 5:153793985-153794298","insertion of AACTA","GALNT10_GALNT10_CTB-157D17.1"]
["patient 3",5,177717867,177719481,5,177721540,177723069,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(2)th(4)",6,"deletion","not determined",null,null,"COL23A1_COL23A1"]
["patient 3",6,1318456,1318816,6,1322036,1322407,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(9)","TH(5)th(5)",10,"deletion","not determined",null,null,"NoGene"]
["patient 3",6,52624253,52625801,6,52709602,52710633,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(3)th(3)",6,"deletion","not determined",null,null,"GSTA2_GSTA5_RP11-392A23.4"]
["patient 3",6,82992290,82995613,7,77506942,77509892,"P3_Colon_Normal(0)P3_Colon_Tumor(6)P3_Liver_Normal(0)P3_Liver_Tumor(18)","HT(16)ht(8)",24,"interchromosomal","prim + meta","7: 77509857-77509970 -> 6: 82992284-82992387","blunt","PHTF2"]
["patient 3",6,85431705,85434250,6,86316126,86318651,"P3_Colon_Normal(0)P3_Colon_Tumor(6)P3_Liver_Normal(0)P3_Liver_Tumor(12)","TH(8)th(10)",18,"deletion","prim + meta","6: 85434074-85434464-> 6: 86316051-86316211","microhomology T","SYNCRIP"]
["patient 3",6,147953818,147955825,6,148037580,148039772,"P3_Colon_Normal(0)P3_Colon_Tumor(7)P3_Liver_Normal(0)P3_Liver_Tumor(0)","HT(6)ht(1)",7,"tandem duplication","prim","6: 147953956-147953694 -> 6: 148040535-148040407","microhomology AA","RP11-307P5.1"]
["patient 3",6,149225004,149227597,7,66030659,66033143,"P3_Colon_Normal(0)P3_Colon_Tumor(6)P3_Liver_Normal(0)P3_Liver_Tumor(15)","TT(14)tt(7)",21,"interchromosomal","prim + meta","6: 149227532-149227664 -> 7: 66033212-66033045","microhomology A","UST_GS1-124K5.12"]
["patient 3",6,149726411,149727190,6,149729923,149730778,"P3_Colon_Normal(0)P3_Colon_Tumor(3)P3_Liver_Normal(0)P3_Liver_Tumor(1)","TH(4)",4,"deletion","prim","6: 149727103-149727177 -> 6: 149729507-149729971","microhomology TAAA","TAB2_TAB2"]
["patient 3",6,150084766,150087498,6,156637160,156640036,"P3_Colon_Normal(0)P3_Colon_Tumor(8)P3_Liver_Normal(0)P3_Liver_Tumor(14)","HH(10)hh(12)",22,"inverted","prim + meta"," 6: 150084812-150084423 -> 6: 156637150-156637288","insertion of TA repeat","PCMT1"]
["patient 3",6,156634435,156636981,7,66461463,66463726,"P3_Colon_Normal(0)P3_Colon_Tumor(4)P3_Liver_Normal(0)P3_Liver_Tumor(14)","TH(6)th(12)",18,"interchromosomal","not determined",null,null,"SBDS_TYW1"]
["patient 3",6,162401020,162401405,6,162430352,162431070,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(2)th(4)",6,"deletion","not determined",null,null,"PARK2_PARK2"]
["patient 3",6,162485734,162488572,6,162665596,162668565,"P3_Colon_Normal(0)P3_Colon_Tumor(6)P3_Liver_Normal(0)P3_Liver_Tumor(8)","TH(11)th(3)",14,"deletion","prim + meta","6: 162488488-162488826 -> 6: 162665562-162665634","microhomology A","PARK2_PARK2"]
["patient 3",6,162663669,162666396,6,162752568,162755553,"P3_Colon_Normal(0)P3_Colon_Tumor(6)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(5)th(7)",12,"deletion","prim + meta","6: 162666393-162666667->162752549-162752851","microhomology T","PARK2_PARK2"]
["patient 3",6,162740676,162743607,6,162876127,162878837,"P3_Colon_Normal(0)P3_Colon_Tumor(4)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(6)th(5)",11,"deletion","prim + meta","6: 162743619-162743665 -> 6:162876105-162876221","blunt","PARK2_PARK2"]
["patient 3",6,162750455,162753095,6,163018629,163020567,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(11)","TH(3)th(8)",11,"deletion","meta","6: 162753086-162753691 -> 6: 163018588-163018691","microhomology AT","PARK2_PARK2"]
["patient 3",7,40352652,40354817,7,40410317,40412225,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(8)","TH(4)th(4)",8,"deletion","not determined",null,null,"C7orf10_C7orf10"]
["patient 3",7,61783170,61787643,7,61803407,61804398,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(8)","HH(4)hh(4)",8,"inverted","not determined",null,null,"NoGene"]
["patient 3",7,64036351,64036973,7,64039913,64040567,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(1)th(5)",6,"deletion","not determined",null,null,"RP11-561N12.1"]
["patient 3",7,110071797,110073925,7,110499828,110501925,"P3_Colon_Normal(0)P3_Colon_Tumor(5)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(3)th(2)",5,"deletion","prim","7: 110073916-110074025 -> 7: 110499267-110499771","blunt","AC003088.1_IMMP2L"]
["patient 3",7,110985925,110988427,7,111195500,111198073,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(4)th(2)",6,"deletion","meta","7: 110988346-110988497 -> 7: 111195378-111195526","blunt","IMMP2L_IMMP2L"]
["patient 3",7,142028006,142028779,7,142045855,142047406,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HT(3)ht(2)",5,"tandem duplication","not determined",null,null,"AC231381.1_AC231381.5"]
["patient 3",7,142454954,142456826,7,142483932,142486104,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(7)","HT(6)ht(3)",9,"tandem duplication","not determined",null,null,"PRSS1_PRSS1_U66061.39_U66061.42"]
["patient 3",8,37418985,37421969,8,39900483,39903232,"P3_Colon_Normal(0)P3_Colon_Tumor(8)P3_Liver_Normal(0)P3_Liver_Tumor(32)","HH(23)hh(17)",40,"inverted","prim + meta","8: 37418984-37418874 -> 8: 39900454-39901044","blunt","RP11-150O12.5"]
["patient 3",8,39921544,39924705,8,40182023,40184993,"P3_Colon_Normal(0)P3_Colon_Tumor(19)P3_Liver_Normal(0)P3_Liver_Tumor(42)","TH(35)th(26)",61,"deletion","prim + meta","8: 39924640-39924759 -> 8: 40181929-40182132","blunt","CTA-392C11.1"]
["patient 3",8,49949658,49950815,13,67503027,67503216,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(4)","TT(2)tt(3)",5,"interchromosomal","not determined",null,null,"PCDH9"]
["patient 3",8,49955413,49955964,13,67503009,67503043,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","HH(2)hh(4)",6,"interchromosomal","not determined",null,null,"PCDH9"]
["patient 3",8,90108849,90111113,8,90595559,90598688,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(9)","TH(2)th(7)",9,"deletion","meta","8: 90111011-90111152 -> 8: 90595199-90595365","microhomology AAG","NoGene"]
["patient 3",8,90317285,90317724,8,90385428,90386350,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(2)th(3)",5,"deletion","not determined",null,null,"NoGene"]
["patient 3",8,142949641,142950340,8,142953356,142954962,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(2)th(3)",5,"deletion","not determined",null,null,"NoGene"]
["patient 3",9,88720666,88722031,9,88724551,88725802,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(4)th(2)",6,"deletion","not determined",null,null,"NoGene"]
["patient 3",9,125486301,125486904,9,125514628,125515809,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(3)th(3)",6,"deletion","not determined",null,null,"OR1L4_OR1L6"]
["patient 3",10,6876069,6876614,10,6879779,6880506,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(2)th(3)",5,"deletion","not determined",null,null,"RP11-799O21.1_RP11-799O21.1"]
["patient 3",10,17776474,17777001,10,18026211,18026803,"P3_Colon_Normal(0)P3_Colon_Tumor(3)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(3)th(7)",10,"deletion","not determined",null,null,"NoGene"]
["patient 3",10,38869743,38874720,20,26200325,26201937,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(4)th(1)",5,"interchromosomal","meta","10: 38874620-38874720 -> 20: 26200325-26200500","not precise","NoGene"]
["patient 3",10,52936928,52939349,10,53048139,53050809,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(8)","TH(4)th(4)",8,"deletion","prim + meta ","10: 52939351-52939503 ->  10: 53047885-53048281","microhomology T","PRKG1_PRKG1"]
["patient 3",10,53304737,53306591,10,53343685,53345051,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(1)th(4)",5,"deletion","meta","10: 53306603-53306702 -> 10: 53342679-53342926","blunt","PRKG1_PRKG1"]
["patient 3",10,53515362,53516968,3,60538443,60539820,"P3_Colon_Normal(0)P3_Colon_Tumor(5)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(2)th(3)",5,"interchromosomal","not determined",null,null,"PRKG1_FHIT"]
["patient 3",10,53698895,53699601,10,53760895,53761643,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(3)th(2)",5,"deletion","meta","10: 53699508-53699940 -> 10: 53760490-53760819","not precise","PRKG1_PRKG1"]
["patient 3",10,53837609,53839855,10,53880144,53882685,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HT(2)ht(3)",5,"tandem duplication","meta","10: 53882635-53883015 ->  10:  53837450-53837637","microhomology GG","PRKG1_PRKG1"]
["patient 3",10,54712347,54712939,4,131717652,131717679,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TT(2)tt(4)",6,"interchromosomal","not determined",null,null,"NoGene"]
["patient 3",10,57700014,57701570,10,57703622,57705209,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(2)th(3)",5,"deletion","not determined",null,null,"NoGene"]
["patient 3",10,82901884,82903276,10,82905578,82906910,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(3)th(2)",5,"deletion","not determined",null,null,"NoGene"]
["patient 3",10,100308414,100309149,10,101176237,101176300,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HT(3)ht(2)",5,"tandem duplication","not determined",null,null,"HPSE2_GOT1"]
["patient 3",10,126712876,126715541,10,126839456,126841247,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(9)","TH(6)th(3)",9,"deletion","not determined",null,null,"CTBP2_CTBP2"]
["patient 3",10,127191066,127191432,10,127199046,127200309,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(4)th(5)",9,"deletion","not determined",null,null,"NoGene"]
["patient 3",10,134583023,134584619,10,134586778,134588259,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(4)th(1)",5,"deletion","not determined",null,null,"INPP5A_INPP5A"]
["patient 3",11,6105038,6105599,21,42571840,42571848,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(2)th(5)",7,"interchromosomal","meta","11: 6105564-6105790","only one flank found","BACE2"]
["patient 3",11,18939188,18941944,11,18963974,18967485,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(8)","TH(6)th(4)",10,"deletion","not determined",null,null,"MRGPRX1_MRGPRX1_RP11-583F24.8"]
["patient 3",11,43653102,43653134,17,45212925,45214262,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(1)th(5)",6,"interchromosomal","not determined",null,null,"HSD17B12_AC002558.2_CDC27_AC002558.3"]
["patient 3",11,45848223,45848248,11,85195020,85195130,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","HH(3)hh(3)",6,"inverted","not determined",null,null,"CTD-2210P24.6_AC044839.1_DLG2_AP003035.1"]
["patient 3",11,66308339,66308812,11,66311903,66312407,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(1)th(4)",5,"deletion","not determined",null,null,"ZDHHC24_ZDHHC24_ACTN3"]
["patient 3",11,84282887,84284321,11,84448564,84450219,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(2)th(4)",6,"deletion","meta","11: 84284216-84284396 -> 11: 84447414-84447829","microhomology TAAA","DLG2_DLG2_CTD-2537O9.1"]
["patient 3",11,98888241,98889711,11,98891794,98893290,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(2)th(3)",5,"deletion","not determined",null,null,"CNTN5_CNTN5"]
["patient 3",11,134032953,134035470,11,134037491,134040158,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(3)th(3)",6,"deletion","not determined",null,null,"NCAPD3_NCAPD3_RP11-700F16.2"]
["patient 3",12,6108343,6109209,22,17161432,17161816,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(4)th(3)",7,"interchromosomal","prim + meta","12: 6109109-6109209 -> 22: 17161432-17161550","not precise","VWF_KB-7G2.5"]
["patient 3",12,6366670,6368151,12,44075343,44077731,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(4)th(1)",5,"deletion","meta","12: 6368104-6368330 -> 12: 44074979-44075109","blunt","NoGene"]
["patient 3",12,11181077,11186115,12,11208820,11213498,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HT(2)ht(3)",5,"tandem duplication","not determined",null,null,"TAS2R14_TAS2R14_TAS2R46"]
["patient 3",12,11250873,11253135,12,11284850,11286738,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(8)","HT(3)ht(5)",8,"tandem duplication","not determined",null,null,"TAS2R14_TAS2R46_TAS2R14_TAS2R46"]
["patient 3",12,12025612,12027174,12,12029182,12030748,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(1)th(4)",5,"deletion","not determined",null,null,"ETV6_ETV6"]
["patient 3",12,30402246,30403569,12,30499480,30501580,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TT(2)tt(4)",6,"inverted","not determined",null,null,"NoGene"]
["patient 3",12,40005354,40006417,12,40009007,40010269,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(2)th(3)",5,"deletion","prim + meta","12: 40006561-40006774 -> 12: 40008854-40008611","not precise","ABCD2_ABCD2"]
["patient 3",12,54799942,54802056,3,144358420,144360269,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(10)","HT(5)ht(5)",10,"interchromosomal","meta","12: 54800003-54799739 -> 3: 144360435-144360161","not precise","ITGA5"]
["patient 3",12,74102385,74103735,12,74106233,74107503,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(6)th(1)",7,"deletion","not determined",null,null,"NoGene"]
["patient 3",13,24443874,24445444,13,24447500,24449191,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(2)th(3)",5,"deletion","not determined",null,null,"MIPEP_MIPEP"]
["patient 3",13,72840317,72842987,13,72846979,72850196,"P3_Colon_Normal(0)P3_Colon_Tumor(12)P3_Liver_Normal(0)P3_Liver_Tumor(13)","TH(17)th(8)",25,"deletion","not determined",null,null,"NoGene"]
["patient 3",13,112866635,112867733,13,112870218,112871373,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(2)th(3)",5,"deletion","not determined",null,null,"NoGene"]
["patient 3",14,50896878,50897862,7,11557798,11558922,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HT(4)ht(3)",7,"interchromosomal","prim + meta","14: 50896729-50896846 -> 7: 11560828-11560025","not precise","MAP4K5_AC004538.3_THSD7A"]
["patient 3",14,81528339,81529679,14,81531944,81533309,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(4)","TH(4) ",4,"deletion","meta","14: 81529610-81530290 ->  14: 81531156-81531949","not precise","TSHR_TSHR"]
["patient 3",14,107052457,107053618,14,107132223,107133257,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","HT(3)ht(3)",6,"tandem duplication","not determined",null,null,"AB019438.21_AB019437.2"]
["patient 3",15,27019444,27021034,15,27023066,27024926,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(4)th(3)",7,"deletion","not determined",null,null,"GABRB3"]
["patient 3",15,56400176,56401032,15,56403958,56404784,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(8)","TH(6)th(3)",9,"deletion","not determined",null,null,"RFX7_RFX7"]
["patient 3",15,70210862,70213701,20,57469150,57471853,"P3_Colon_Normal(0)P3_Colon_Tumor(18)P3_Liver_Normal(0)P3_Liver_Tumor(0)","HT(5)ht(13)",18,"interchromosomal","prim","15: 70210942-70210769 -> 20: 57471931-57471797","insertion of CCACA","AL109840.2_GNAS"]
["patient 3",15,70216996,70219165,20,57131996,57134594,"P3_Colon_Normal(0)P3_Colon_Tumor(11)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TT(7)tt(4)",11,"interchromosomal","prim","20: 57134631-57135129 -> 15: 70219221-70219137","blunt fusion","RP5-907D15.2"]
["patient 3",15,70226269,70228551,15,71505444,71507954,"P3_Colon_Normal(0)P3_Colon_Tumor(17)P3_Liver_Normal(0)P3_Liver_Tumor(0)","HH(7)hh(10)",17,"inverted","prim","15:70226315-70226121 -> 15:71505242-71505193 -> 15:71505244-71505509","bp1: GCC microhomology, bp2: blunt","THSD4"]
["patient 3",15,70233781,70236494,20,56438663,56441250,"P3_Colon_Normal(0)P3_Colon_Tumor(14)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(6)th(8)",14,"interchromosomal","prim","15: 70236487-70236599 -> 20: 56438595-56438704","insertion of TGATGCACCACCATG","NoGene"]
["patient 3",15,70529801,70532429,15,71634917,71637448,"P3_Colon_Normal(0)P3_Colon_Tumor(18)P3_Liver_Normal(0)P3_Liver_Tumor(0)","HH(8)hh(10)",18,"inverted","not determined",null,null,"THSD4_RP11-592N21.1"]
["patient 3",15,70796906,70799660,20,57147895,57150764,"P3_Colon_Normal(0)P3_Colon_Tumor(18)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(9)th(9)",18,"interchromosomal","prim","15: 70799670-70799752 -> 20: 57147616-57147674","insertion of TGCCC","RP5-907D15.2"]
["patient 3",15,71202894,71205623,20,57069430,57072115,"P3_Colon_Normal(0)P3_Colon_Tumor(13)P3_Liver_Normal(0)P3_Liver_Tumor(0)","HT(9)ht(4)",13,"interchromosomal","prim","20: 57072420-57072489  ","only one flank found","LRRC49_APCDD1L"]
["patient 3",15,71322490,71324993,15,71325037,71327301,"P3_Colon_Normal(0)P3_Colon_Tumor(7)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TT(4)tt(3)",7,"inverted","prim","15: 71324993-71324993 -> 15: 71327301-71327301","not precise","LRRC49_LRRC49"]
["patient 3",15,71551381,71552519,15,71562207,71563088,"P3_Colon_Normal(0)P3_Colon_Tumor(8)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(6)th(2)",8,"deletion","prim","15: 71552550-71553153 -> 15: 71561759-71562229","not precise","THSD4_THSD4"]
["patient 3",15,71750633,71752866,20,56183769,56186225,"P3_Colon_Normal(0)P3_Colon_Tumor(13)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(4)th(9)",13,"interchromosomal","prim","15: 71752875-71753164 -> 20: 56183473-56183790","blunt","THSD4_ZBP1"]
["patient 3",15,75865555,75866871,15,75869293,75870469,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(1)th(5)",6,"deletion","not determined",null,null,"PTPN9_PTPN9"]
["patient 3",15,91400441,91401454,15,91404398,91405105,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(1)th(6)",7,"deletion","not determined",null,null,"AC124248.1"]
["patient 3",15,91985948,91986395,15,91989335,91989513,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","HT(2)ht(4)",6,"tandem duplication","prim","15: 91989447-91989617 -> 15: 91983477-91983683","not precise","NoGene"]
["patient 3",16,26346160,26348091,16,26349524,26351401,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TT(1)tt(5)",6,"inverted","not determined",null,null,"AC009158.1"]
["patient 3",16,33982670,33983669,4,110818558,110818589,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HH(1)hh(4)",5,"interchromosomal","not determined",null,null,"NoGene"]
["patient 3",16,78637104,78640326,16,78643881,78648608,"P3_Colon_Normal(0)P3_Colon_Tumor(7)P3_Liver_Normal(0)P3_Liver_Tumor(1)","TH(7)th(1)",8,"deletion","prim","16: 78639718-78640139 -> 16: 78645859-78645930","blunt","WWOX_WWOX"]
["patient 3",16,78820304,78821245,16,78929139,78930279,"P3_Colon_Normal(0)P3_Colon_Tumor(7)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(5)th(2)",7,"deletion","prim","16: 78821255-78821809 -> 16: 78928491-78929167","not precise","WWOX_WWOX"]
["patient 3",16,78937512,78938611,16,79180524,79181617,"P3_Colon_Normal(0)P3_Colon_Tumor(6)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(3)th(3)",6,"deletion","prim","16: 78938603-78939096 -> 16: 79179604-79179802","microhomology A","WWOX_WWOX"]
["patient 3",16,79029865,79032420,16,79111686,79114771,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(10)","TH(4)th(6)",10,"deletion","meta","16: 79032303-79032469 -> 16: 79111649-79111705","blunt","WWOX_WWOX"]
["patient 3",17,36540631,36541638,17,36544225,36545397,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(4)th(3)",7,"deletion","not determined",null,null,"SOCS7_SOCS7"]
["patient 3",17,39387716,39388705,17,39402687,39402908,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(4)th(2)",6,"deletion","not determined",null,null,"KRTAP9-9_KRTAP9-3_KRTAP9-9"]
["patient 3",18,66202618,66205829,18,66209956,66210911,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(4)th(4)",8,"deletion","not determined",null,null,"NoGene"]
["patient 3",19,17140647,17140662,2,40777573,40778472,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HH(2)hh(5)",7,"interchromosomal","not determined",null,null,"SLC8A1"]
["patient 3",19,21748981,21750474,19,21752596,21754355,"P3_Colon_Normal(0)P3_Colon_Tumor(3)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(6)th(2)",8,"deletion","meta","19: 21752430-21752491","only one flank found","AC123912.1_AC123912.1"]
["patient 3",19,33444352,33444473,20,26211178,26212420,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(7)","HT(4)ht(5)",9,"interchromosomal","not determined",null,null,"CCDC123"]
["patient 3",19,55202334,55203978,19,55206042,55208256,"P3_Colon_Normal(0)P3_Colon_Tumor(5)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(2)th(9)",11,"deletion","not determined",null,null,"LILRP1"]
["patient 3",19,56558861,56558879,8,40312597,40313321,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(5)th(3)",8,"interchromosomal","not determined",null,null,"NLRP5"]
["patient 3",20,14571097,14573302,20,14604425,14606960,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(3)th(3)",6,"deletion","not determined",null,null,"MACROD2_NCRNA00227_MACROD2_NCRNA00227"]
["patient 3",20,14587575,14590007,20,14761443,14763788,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(4)th(3)",7,"deletion","meta","20: 14590000-14590090 -> 20: 14761015-14761184","microhomology G","MACROD2_NCRNA00227_MACROD2"]
["patient 3",20,14667618,14669286,20,15217119,15219026,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(3)","TH(2)th(1)",3,"deletion","meta","20: 14669244-14669804","only one flank found","MACROD2_MACROD2"]
["patient 3",20,14776528,14778939,20,14796676,14798489,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(4)th(3)",7,"deletion","not determined",null,null,"MACROD2_MACROD2"]
["patient 3",20,14786171,14788526,20,15377951,15380112,"P3_Colon_Normal(0)P3_Colon_Tumor(7)P3_Liver_Normal(0)P3_Liver_Tumor(4)","TH(3)th(8)",11,"deletion","prim + meta","20: 14788479-14788735 -> 20: 15377387-15377642","microhomology AG","MACROD2_MACROD2"]
["patient 3",20,14818777,14820077,20,15032961,15034313,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(9)","TH(2)th(7)",9,"deletion","meta","20: 14820001-14820077 -> 20: 15032961-15033061","not precise"]
["patient 3",20,15060067,15062004,20,15183655,15185810,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(2)th(4)",6,"deletion","meta","20: 15062607-15062832 -> 20: 15183586-15183690","insertion of ACTAATTTAACT","MACROD2_MACROD2"]
["patient 3",20,15083408,15086276,21,11181331,11184298,"P3_Colon_Normal(0)P3_Colon_Tumor(12)P3_Liver_Normal(0)P3_Liver_Tumor(19)","HT(17)ht(14)",31,"interchromosomal","prim + meta","20: 15083464-15083400 -> 21: 11184366-11183978","microhomology A","MACROD2_EIF3FP1"]
["patient 3",20,15084044,15085874,22,18886482,18889075,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(6)","HH(4)hh(4)",8,"interchromosomal","not determined",null,null,"MACROD2"]
["patient 3",20,15191174,15192809,20,15302755,15304606,"P3_Colon_Normal(0)P3_Colon_Tumor(5)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(2)th(3)",5,"deletion","prim","20: 15192701-15192809 -> 20: 15302755-15302855","not precise","MACROD2_MACROD2"]
["patient 3",20,15208210,15210733,20,15271062,15273809,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(7)","TH(4)th(3)",7,"deletion","meta","20: 15210705-15210887 -> 20: 15270920-15271129","microhomology AA","MACROD2_MACROD2"]
["patient 3",20,17101708,17102989,20,17105283,17106960,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(3)th(3)",6,"deletion","not determined",null,null,"NoGene"]
["patient 3",20,24901783,24903031,20,24905601,24907406,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(3)th(5)",8,"deletion","not determined",null,null,"NoGene"]
["patient 3",20,26288924,26290583,20,26295246,26297497,"P3_Colon_Normal(0)P3_Colon_Tumor(5)P3_Liver_Normal(0)P3_Liver_Tumor(4)","TH(3)th(6)",9,"deletion","not determined",null,null,"NoGene"]
["patient 3",20,29637760,29638445,4,14424126,14424146,"P3_Colon_Normal(0)P3_Colon_Tumor(0)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TT(4)tt(2)",6,"interchromosomal","not determined",null,null,"AL441988.1_MLLT10P1_RP11-348I14.4"]
["patient 3",20,29648025,29648884,5,151497083,151497087,"P3_Colon_Normal(0)P3_Colon_Tumor(5)P3_Liver_Normal(0)P3_Liver_Tumor(0)","HH(2)hh(3)",5,"interchromosomal","meta","20: 29648125-29648025 -> 5: 151497083-151497087","not precise","CTB-12O2.1"]
["patient 3",20,56391233,56393360,20,56406119,56408300,"P3_Colon_Normal(0)P3_Colon_Tumor(16)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(12)th(4)",16,"deletion","prim","20: 56393325-56393444 -> 20: 56405689-56406112","insertion of GGATGTCACAACTTCTAGATGTTGCTGTGGGAGGACCACAGAG","NoGene"]
["patient 3",20,56428388,56431263,20,56635420,56637463,"P3_Colon_Normal(0)P3_Colon_Tumor(6)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(4)th(2)",6,"deletion","prim","20: 56431274-56431818 -> 20: 56635362-56635428","microhomology GAAG","NoGene"]
["patient 3",20,56613894,56616435,20,57085029,57087384,"P3_Colon_Normal(0)P3_Colon_Tumor(17)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(10)th(7)",17,"deletion","prim","20: 56616421-56616654 -> 20: 57084883-57084847","insertion of ACTA","APCDD1L"]
["patient 3",21,10732815,10735678,21,10766395,10768194,"P3_Colon_Normal(0)P3_Colon_Tumor(2)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TH(5)th(3)",8,"deletion","not determined",null,null,"NoGene"]
["patient 3",21,10759902,10762888,21,10765178,10766569,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TH(2)th(4)",6,"deletion","not determined",null,null,"NoGene"]
["patient 3",21,19938101,19940988,21,19940991,19943607,"P3_Colon_Normal(0)P3_Colon_Tumor(6)P3_Liver_Normal(0)P3_Liver_Tumor(5)","TT(5)tt(6)",11,"inverted","prim + meta","21: 19938101-19940988 -> 21: 19943607-19943507","not precise","AL109763.2_AL109763.2"]
["patient 3",21,41398863,41400456,21,41403207,41404561,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(6)","TT(3)tt(4)",7,"inverted","not determined",null,null,"DSCAM_DSCAM"]
["patient 3",21,43701876,43703420,21,43705439,43707064,"P3_Colon_Normal(0)P3_Colon_Tumor(1)P3_Liver_Normal(0)P3_Liver_Tumor(10)","TH(7)th(4)",11,"deletion","not determined",null,null,"ABCG1_ABCG1"]
["patient 3","X",7328146,7330304,"X",7463723,7465605,"P3_Colon_Normal(0)P3_Colon_Tumor(5)P3_Liver_Normal(0)P3_Liver_Tumor(0)","TH(2)th(3)",5,"deletion","prim","X: 7330261-7330625 -> X: 7463343-7463673","blunt","NoGene"]
["patient 3","X",134755739,134758154,"X",134801424,134803334,"P3_Colon_Normal(0)P3_Colon_Tumor(4)P3_Liver_Normal(0)P3_Liver_Tumor(5)","HH(5)hh(4)",9,"inverted","prim","X: 134755839-134755739 -> X: 134801424-134801501","not precise","NoGene"]
["patient 3","X",136079797,136081430,"X",136083569,136085054,"P3_Colon_Normal(0)P3_Colon_Tumor(5)P3_Liver_Normal(0)P3_Liver_Tumor(2)","TH(3)th(4)",7,"deletion","not determined",null,null,"RP11-308D16.4_RP11-308D16.2_RP11-308D16.4_RP11-308D16.2"]
["patient 3","Y",28578330,28585953,"Y",58968823,58975090,"P3_Colon_Normal(0)P3_Colon_Tumor(5)P3_Liver_Normal(0)P3_Liver_Tumor(12)","HH(7)hh(10)",17,"inverted","not determined",null,null,"NoGene"]
["patient 4",1,49802947,49804768,1,49921957,49923762,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(2)th(3)",5,"deletion","prim","1: 49804738-49804862 -> 1: 49921536-49921789","blunt","AGBL4_AGBL4_RP4-795A5.1"]
["patient 4",1,162534083,162535615,1,162560093,162562304,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(7)","TH(3)th(4)",7,"deletion","meta","1: 162535522-162535879 -> 1:  162559841-162560158","microhomology AA","UAP1_UAP1"]
["patient 4",1,163398379,163400456,1,203494249,203496422,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(9)","TT(6)tt(3)",9,"inverted","prim + meta","1: 163400471-163400748","only one flank found","NoGene"]
["patient 4",1,163442290,163443321,1,203497211,203498241,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(5)","HH(1)hh(4)",5,"inverted","not determined",null,null,"NoGene"]
["patient 4",1,208378873,208380330,18,29271081,29273046,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(6)","TH(2)th(4)",6,"interchromosomal","meta","1: 208380321-208380494 -> 18: 29270120-29270417","microhomology AGATGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTAGCATGATCTTGGCTCACTGC\nAACCTCCACCTCCTGGGTTCAAGCGATTCTCCCACCTCAGCCTCCCGAGTAGCTGGGATT\nACAGG\n","PLXNA2"]
["patient 4",2,17406991,17407734,2,17435274,17437065,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(4)ht(1)",5,"tandem duplication","not determined",null,null,"NoGene"]
["patient 4",3,56654445,56656016,3,56986279,56988107,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(3)th(2)",5,"deletion","prim","3: 56655985-56656380  -> 3: 56985748-56986164","blunt","CCDC66_C3orf63_ARHGEF3_RP11-51O17.1"]
["patient 4",3,96404490,96407077,3,96439770,96443240,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(6)","TT(2)tt(4)",6,"inverted","not determined",null,null,"NoGene"]
["patient 4",3,96407234,96409302,3,96443905,96446423,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(8)","HH(4)hh(4)",8,"inverted","not determined",null,null,"NoGene"]
["patient 4",3,116274800,116277310,6,62543759,62545039,"P4_Colon_Normal(0)P4_Colon_Tumor(4)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(4)",4,"interchromosomal","prim","3: 116274905-116274772 -> 6: 62542698-62543439","blunt","LSAMP_RP11-63L4.1_KHDRBS2"]
["patient 4",3,116505890,116507162,6,72831657,72833123,"P4_Colon_Normal(0)P4_Colon_Tumor(3)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(1)tt(2)",3,"interchromosomal","prim"," 6: 72833140-72833395 -> 3: 116507877-116507476","insertion of AA","LSAMP_RIMS1"]
["patient 4",3,119898040,119899910,5,53265083,53266766,"P4_Colon_Normal(0)P4_Colon_Tumor(7)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(4)ht(3)",7,"interchromosomal","prim","3: 119898079-119897695 -> 5:53266874-53266724","not precise","GPR156_ARL15_AC034246.1"]
["patient 4",3,121546534,121548528,3,140999180,141001121,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(2)tt(3)",5,"inverted","prim","3: 121548554-121548880 -> 3: 141001514-141001326","microhomology C","IQCB1_ACPL2_RP11-438D8.2"]
["patient 4",3,121549168,121551138,6,8110882,8112019,"P4_Colon_Normal(0)P4_Colon_Tumor(4)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(2)hh(2)",4,"interchromosomal","prim","3: 121549177-121548913 -> 6: 8110888-8110663","not precise","IQCB1_EAF2"]
["patient 4",3,132691793,132693842,3,193104428,193107195,"P4_Colon_Normal(0)P4_Colon_Tumor(8)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(2)th(6)",8,"deletion","prim","3: 132693822-132693904 -> 3: 193104441-193104473","insertion of T","NoGene"]
["patient 4",3,133639033,133640150,3,150984044,150985508,"P4_Colon_Normal(0)P4_Colon_Tumor(4)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(2)tt(2)",4,"inverted","prim","3: 133640093-133640292 -> 6: 42047709-42047659 -> 3: 150986263-150985578","3 and 6: microhomology of GAC, 6 and 3: insertion of GTCCCTTAAGCTAT\n","MED12L_P2RY14_RP11-600P18.4"]
["patient 4",3,136042870,136044108,3,146980401,146982165,"P4_Colon_Normal(0)P4_Colon_Tumor(6)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(3)ht(3)",6,"tandem duplication","prim","3: 136042576-136042355 -> 3: 146982496-146982146","insertion of AGAA","PCCB_RP11-649A16.1"]
["patient 4",3,136535377,136537190,6,100167056,100168340,"P4_Colon_Normal(0)P4_Colon_Tumor(12)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(5)th(7)",12,"interchromosomal","prim","3: 136537142- 136537699 -> 6: 100166696- 100166973","blunt","TMEM22"]
["patient 4",3,136539077,136539760,6,72506993,72508522,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(1)hh(4)",5,"interchromosomal","not determined",null,null,"TMEM22"]
["patient 4",3,143367862,143369638,3,162711293,162713354,"P4_Colon_Normal(0)P4_Colon_Tumor(9)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(6)hh(3)",9,"inverted","prim","3: 143367359-143367231 -> 3: 162711140-162711311","microhomology A","SLC9A9"]
["patient 4",3,146568386,146569737,3,167129548,167131401,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(3)tt(2)",5,"inverted","prim","3: 146569707-146570184  -> 3: 167132062-167131670","blunt","NoGene"]
["patient 4",3,146809618,146811762,3,192148789,192150935,"P4_Colon_Normal(0)P4_Colon_Tumor(4)P4_Liver_Normal(0)P4_Liver_Tumor(0)","hh(4)",4,"interchromosomal","prim","3: 146809642-146809274  -> 3: 192148211-192148503","blunt","RP11-649A16.1_FGF12"]
["patient 4",3,148192293,148193578,3,148196116,148197662,"P4_Colon_Normal(0)P4_Colon_Tumor(4)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(1)th(3)",4,"deletion","prim","3: 148193582-148194050 -> 3: 148195719-148196151 ","not precise","NoGene"]
["patient 4",3,153861563,153863907,6,7975227,7976587,"P4_Colon_Normal(0)P4_Colon_Tumor(10)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(3)th(7)",10,"interchromosomal","prim","3: 153863858-153864180 -> 6: 7974790-7975116","blunt","ARHGEF26_MUTED"]
["patient 4",3,161783696,161785511,6,100381073,100383094,"P4_Colon_Normal(0)P4_Colon_Tumor(7)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(4)ht(3)",7,"interchromosomal","prim","3: 161783725-161783631 -> 6: 100383158-100383038","blunt","MCHR2"]
["patient 4",3,165209653,165212672,6,24857255,24860048,"P4_Colon_Normal(0)P4_Colon_Tumor(12)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(5)tt(7)",12,"interchromosomal","prim","3: 165212576-165212706 -> 6: 24860234-24860014","microhomology CCA","RP11-85M11.2_FAM65B"]
["patient 4",3,165260710,165263099,5,53505897,53508673,"P4_Colon_Normal(0)P4_Colon_Tumor(8)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(3)ht(5)",8,"interchromosomal","prim","5: 53508908-53508586","only one flank found","RP11-85M11.2_ARL15_AC034246.1"]
["patient 4",3,165773176,165775886,6,25994741,25997121,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(2)tt(3)",5,"interchromosomal","not determined",null,null,"NoGene"]
["patient 4",3,166524585,166527014,6,48537273,48539587,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(2)tt(3)",5,"interchromosomal","prim","3: 166526944-166527250 -> 6: 48539908-48539572","blunt","CBX1P5"]
["patient 4",3,167515728,167518568,3,192530891,192533361,"P4_Colon_Normal(0)P4_Colon_Tumor(8)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(4)hh(4)",8,"inverted","prim","3: 167515780-167515601 -> 3: 192530745-192530970","microhomology T","SERPINI1_C3orf59"]
["patient 4",3,174594991,174595516,3,174677622,174678318,"P4_Colon_Normal(0)P4_Colon_Tumor(4)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(3)th(1)",4,"deletion","prim","3: 174596785-174596802 -> 3: 174677164-174677197","blunt","NAALADL2_RP11-432A8.2_NAALADL2_RP11-432A8.2"]
["patient 4",3,190616878,190619384,3,191135633,191137944,"P4_Colon_Normal(0)P4_Colon_Tumor(7)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(4)tt(3)",7,"inverted","prim","3: 191137978-191137877 -> 3: 190619386-190619580","blunt","NoGene"]
["patient 4",3,191542736,191545061,6,48108422,48110492,"P4_Colon_Normal(0)P4_Colon_Tumor(9)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(6)th(3)",9,"interchromosomal","prim","3: 191545033-191545259 -> 6: 48108166-48108483","microhomology T","NoGene"]
["patient 4",3,191611575,191612274,6,97835272,97836598,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(2)ht(3)",5,"interchromosomal","not determined",null,null,"NoGene"]
["patient 4",3,192155007,192156944,6,96782363,96783869,"P4_Colon_Normal(0)P4_Colon_Tumor(4)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(4)",4,"interchromosomal","prim","3: 192155062-192154813 -> 6: 96782002-96782471","microhomology T","FGF12"]
["patient 4",3,192534485,192536549,6,9333886,9336407,"P4_Colon_Normal(0)P4_Colon_Tumor(14)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(10)th(4)",14,"interchromosomal","prim","3: 192536533-192536599 -> 6: 9333683-9333929","microhomology G","C3orf59"]
["patient 4",4,53011264,53014267,4,53066930,53069377,"P4_Colon_Normal(0)P4_Colon_Tumor(6)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(2)th(4)",6,"deletion","prim","4: 53014247-53014337 -> 4: 53066874-53067019","microhomology TG","NoGene"]
["patient 4",4,107181579,107183018,4,107215597,107216856,"P4_Colon_Tumor(4)P4_Colon_Normal(0)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(4)",4,"tandem duplication","prim","4: 107216767-107217222 ->  4: 107180970-107181354","microhomology AAT","TBCK_TBCK"]
["patient 4",4,110618643,110620517,4,110683628,110685486,"P4_Colon_Normal(0)P4_Colon_Tumor(6)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(3)th(3)",6,"deletion","prim","4: 110620513-110620872 -> 4: 110646539-110646547 -> 4: 110683519-110683678","not precise","CASP6_CFI"]
["patient 4",5,42882085,42883238,6,8108078,8109181,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(3)tt(2)",5,"interchromosomal","prim","5: 42883224-42883292 -> 6: 8109517-8109229","not precise","SEPP1"]
["patient 4",5,43672276,43674850,9,111708726,111710521,"P4_Colon_Normal(0)P4_Colon_Tumor(14)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(6)ht(8)",14,"interchromosomal","prim","5: 43672337-43672241 -> 9: 111710813-111710494","microhomology of A","NNT_C9orf6_CTNNAL1"]
["patient 4",5,55466078,55467620,5,55469961,55471432,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(1)","TH(5)th(1)",6,"deletion","not determined",null,null,"ANKRD55_ANKRD55"]
["patient 4",5,59214410,59216481,5,59728201,59731083,"P4_Colon_Normal(0)P4_Colon_Tumor(9)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(6)th(3)",9,"deletion","prim","5: 59216465-59216837","only one flank found","PDE4D_PDE4D_RP11-546M4.1"]
["patient 4",6,25006753,25008741,6,97560660,97562883,"P4_Colon_Normal(0)P4_Colon_Tumor(8)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(3)ht(5)",8,"tandem duplication","prim","6: 25006800-25006700 -> 6: 97563354-97562883","blunt","KLHL32"]
["patient 4",6,30222990,30225620,6,62895896,62897791,"P4_Colon_Normal(0)P4_Colon_Tumor(7)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(5)hh(2)",7,"inverted","prim","6: 30223014-30222587 -> 6: 62895633-62895933","blunt ","AL662795.3_AL662795.4_HLA-L_KHDRBS2"]
["patient 4",6,49361807,49364428,6,97836756,97838746,"P4_Colon_Normal(0)P4_Colon_Tumor(11)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(1)hh(10)",11,"inverted","prim","6: 49361803-49361512 -> 6: 97836671-97836733","blunt","NoGene"]
["patient 4",6,49455879,49459099,6,97563394,97565723,"P4_Colon_Normal(0)P4_Colon_Tumor(8)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(3)th(5)",8,"deletion","prim","6: 49361799-49361512 -> 6: 97836671-97836913","blunt","CENPQ_KLHL32"]
["patient 4",6,66166717,66167579,6,66624582,66625922,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(2)th(3)",5,"deletion","prim","6: 66168366-66168426 -> 6: 66624294-66624350","blunt","EYS"]
["patient 4",6,87330569,87332697,6,114996047,114998264,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(10)","TH(5)th(5)",10,"deletion","meta","6: 87332651-87332991 -> 6: 114995787-114996104","blunt","NoGene"]
["patient 4",6,98390444,98392418,9,111427832,111430237,"P4_Colon_Normal(0)P4_Colon_Tumor(11)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(8)th(3)",11,"interchromosomal","prim","9: 111427834-111427668 -> 6: 98392470-98392359","microhomology T","NoGene"]
["patient 4",6,162163387,162165662,6,162183567,162185974,"P4_Colon_Normal(0)P4_Colon_Tumor(7)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(1)th(6)",7,"deletion","prim","6: 162165678-162165970 -> 6: 162183373-162183669","microhomology AAT","PARK2_PARK2"]
["patient 4",6,162353175,162355453,6,163190307,163192040,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(2)th(3)",5,"deletion","not determined",null,null,"PARK2_PACRG"]
["patient 4",6,162427029,162429254,6,162440635,162443266,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(3)th(2)",5,"deletion","not determined",null,null,"PARK2_PARK2"]
["patient 4",6,170909787,170911773,13,115106076,115109812,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(4)ht(1)",5,"interchromosomal","not determined",null,null,"NoGene"]
["patient 4",7,24233931,24235342,7,24237890,24239286,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(3)th(2)",5,"deletion","not determined",null,null,"AC004485.3_AC004485.3"]
["patient 4",7,50067894,50070398,7,50187687,50190561,"P4_Colon_Normal(0)P4_Colon_Tumor(17)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(10)th(7)",17,"deletion","prim","7: 50070342-50070629 -> 7: 50187622-50187678","blunt","ZPBP_C7orf72"]
["patient 4",7,70490878,70492524,7,70498681,70500367,"P4_Colon_Normal(0)P4_Colon_Tumor(6)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(4)th(2)",6,"deletion","prim","7: 70498542-70498701","only one flank found","NoGene"]
["patient 4",8,34330731,34333534,8,36782127,36785088,"P4_Colon_Normal(0)P4_Colon_Tumor(12)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(7)hh(5)",12,"inverted","prim","8: 34330799-34330707 -> 8: 36782027-36782153","microhomology TTA ","KCNU1"]
["patient 4",8,34331178,34333393,8,36511593,36513948,"P4_Colon_Normal(0)P4_Colon_Tumor(13)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(6)tt(7)",13,"inverted","prim + meta","8: 34333393-34333647 -> 8: 36514155-36513894","insertion of A","RP11-962G15.1"]
["patient 4",8,36158315,36161242,8,43646530,43649207,"P4_Colon_Normal(0)P4_Colon_Tumor(14)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(7)th(7)",14,"deletion","prim","8: 36161243-36161758 -> 8: 43646514-43646569","blunt","NoGene"]
["patient 4",8,36158830,36159727,8,41283385,41285081,"P4_Colon_Normal(0)P4_Colon_Tumor(6)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(3)ht(3)",6,"tandem duplication","prim","8: 36157899-36157442 -> 8: 41285241-41285066","microhomology CTGCTGTG","SNORD65.4"]
["patient 4",8,36358927,36362355,8,40923717,40926150,"P4_Colon_Normal(0)P4_Colon_Tumor(14)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(10)ht(4)",14,"tandem duplication","prim","8: 36358940-36358637 -> 8: 40926251-40926141","blunt","NoGene"]
["patient 4",8,36440148,36443108,8,39377093,39379270,"P4_Colon_Normal(0)P4_Colon_Tumor(10)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(4)ht(6)",10,"tandem duplication","prim","8: 36440238-36439980 -> 8: 39379536-39379233","microhomology AAA","RP11-962G15.1_RP1-155O2.1_ADAM3A_AC123767.2"]
["patient 4",8,36867812,36870275,8,37789646,37791368,"P4_Colon_Normal(0)P4_Colon_Tumor(8)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(5)tt(3)",8,"inverted","prim + meta","8: 36870246-36870489  -> 8: 37791683-37791291","blunt ","GOT1L1"]
["patient 4",8,36912234,36914139,8,47119771,47121748,"P4_Colon_Normal(0)P4_Colon_Tumor(6)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(1)hh(5)",6,"inverted","prim","8: 36912237-36911680 -> 8: 47119744-47119822","blunt","NoGene"]
["patient 4",8,37473964,37476378,8,39390152,39392532,"P4_Colon_Normal(0)P4_Colon_Tumor(12)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(8)hh(4)",12,"inverted","prim","8: 37473991-37473780 -> 8: 39390002-39390213","microhomology CTGTTTT","RP11-150O12.4"]
["patient 4",8,39144393,39146146,8,47111260,47113502,"P4_Colon_Normal(0)P4_Colon_Tumor(9)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(4)ht(5)",9,"tandem duplication","prim + meta","8: 39144529-39144357 -> 8: 47113710 - 47113491","blunt","ADAM32"]
["patient 4",9,96569412,96571782,9,100366447,100368804,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(9)","TH(5)th(4)",9,"deletion","meta","9: 96571786-96571907 -> 9: 100366427-100366502","microhomology C","TMOD1_TSTD2"]
["patient 4",10,65861498,65863887,10,65875663,65876909,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(4)th(1)",5,"deletion","prim","10: 65863921-65863970 -> 10: 65875161-65875357","insertion of C","NoGene"]
["patient 4",11,28546711,28548304,6,156302660,156304279,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(4)tt(1)",5,"interchromosomal","prim","11: 28548302-28548366 -> 6: 156304708-156304464","insertion of GAGAAATT","RP11-22P4.1"]
["patient 4",11,57028414,57030219,11,62164189,62166303,"P4_Colon_Normal(0)P4_Colon_Tumor(7)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(3)hh(4)",7,"inverted","prim","11: 57028514-57028414 -> 11: 62164189-62164290","not precise","NoGene"]
["patient 4",11,57390222,57393033,21,16464636,16466584,"P4_Colon_Normal(0)P4_Colon_Tumor(10)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(7)th(3)",10,"interchromosomal","prim","11: 57393017-57393211 -> 21: 16464459-16464797","microhomology CTG","AP000662.1"]
["patient 4",11,62159412,62160935,11,63935761,63936774,"P4_Colon_Normal(0)P4_Colon_Tumor(10)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(4)th(6)",10,"deletion","not determined",null,null,"ASRGL1_CTD-2531D15.5_MACROD1"]
["patient 4",12,6661831,6663841,12,11479949,11482679,"P4_Colon_Normal(0)P4_Colon_Tumor(6)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(2)hh(4)",6,"inverted","prim","12: 6661834-6661783 -> 12: 11479946-11480088","microhomology ACAG","IFFO1_NOP2"]
["patient 4",12,22241562,22243488,12,23901258,23903320,"P4_Colon_Normal(0)P4_Colon_Tumor(9)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(4)tt(5)",9,"inverted","prim","12: 22244110-22244311 -> 12: 23903416-23903293","blunt","SOX5"]
["patient 4",12,23923589,23925428,6,7620692,7623368,"P4_Colon_Normal(0)P4_Colon_Tumor(11)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(5)ht(6)",11,"interchromosomal","prim","12: 23923590-23923425 -> 6: 7623433-7623328","blunt","SOX5_RP3-336K20__B.2"]
["patient 4",12,25696603,25699039,3,190805806,190808367,"P4_Colon_Normal(0)P4_Colon_Tumor(11)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(9)tt(2)",11,"interchromosomal","prim","12: 25699163- 25699382 -> 3: 190808563-190808327","blunt","IFLTD1"]
["patient 4",12,26078257,26080398,3,161917893,161919793,"P4_Colon_Normal(0)P4_Colon_Tumor(9)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(4)ht(5)",9,"interchromosomal","prim","12: 26078239-26078065 -> 3: 161920120-161919807","blunt","NoGene"]
["patient 4",14,64687236,64689939,14,64717860,64720590,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(7)","HT(3)ht(4)",7,"tandem duplication","meta","14: 64687256-64687326 -> 14: 64721182-64720668 ","blunt","SYNE2_ESR2"]
["patient 4",14,107026331,107028138,17,50697866,50699916,"P4_Colon_Normal(0)P4_Colon_Tumor(9)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(8)hh(1)",9,"interchromosomal","prim","14: 107026432-107025739","only one flank found","NoGene"]
["patient 4",15,20935275,20935816,15,21939156,21939883,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(5)","HT(3)ht(2)",5,"tandem duplication","not determined",null,null,"AC068446.1_AC068446.2"]
["patient 4",15,74653331,74655310,17,77772433,77773698,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(5)","HT(2)ht(3)",5,"interchromosomal","not determined",null,null,"CYP11A1_CBX8"]
["patient 4",16,6248506,6250747,16,6378831,6380774,"P4_Colon_Normal(0)P4_Colon_Tumor(6)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(4)th(2)",6,"deletion","not determined",null,null,"NoGene"]
["patient 4",16,6586750,6587759,16,6596108,6597999,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(6)","HT(5)ht(1)",6,"tandem duplication","not determined",null,null,"NoGene"]
["patient 4",16,79194156,79196756,16,79270438,79272292,"P4_Colon_Normal(0)P4_Colon_Tumor(7)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(3)th(4)",7,"deletion","not determined",null,null,"WWOX"]
["patient 4",17,32112860,32113771,21,36078807,36080162,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(10)","HT(7)ht(3)",10,"interchromosomal","meta","17: 32112896-32112779 -> 17: 69672112-69672625","blunt, one breakpoint missed","ACCN1_CLIC6"]
["patient 4",17,32113189,32114120,17,60138020,60139461,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(5)","TH(1)th(4)",5,"deletion","meta","17:32114114-32114233 -> 21: 47005005-47004364","blunt, one breakpoint missed","ACCN1_MED13"]
["patient 4",17,34387513,34388512,17,69836276,69837799,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(7)","HH(5)hh(2)",7,"inverted","meta","17: 34387569-34386787 ","only one flank found","NoGene"]
["patient 4",17,36271457,36274015,17,69794557,69797324,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(3)","tt(3)",3,"inverted","meta","17: 36273979-36274355 -> 17: 69797521-69797270","microhomology CAC","NoGene"]
["patient 4",17,40814703,40816954,17,70141369,70143738,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(6)","HT(5)ht(1)",6,"tandem duplication","meta","17: 70144099-70143675 -> 17: 40814733-40814683","insertion of AGT","TUBG2_PLEKHH3_AC005152.2"]
["patient 4",17,60138913,60139352,21,47004072,47004879,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(5)","HH(1)hh(4)",5,"interchromosomal","meta","21: 47004090-47003777 -> 21: 15693608-15693702 -> 17: 60137441-60137750","Bp1: blunt, Bp2 microhomology TC","MED13"]
["patient 4",17,61528927,61531431,21,44019447,44021284,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(10)","TH(6)th(4)",10,"interchromosomal","meta","17: 61531466-61531588 -> 21: 44019008-44019496","microhomology CC","AP001626.1"]
["patient 4",17,64277098,64278771,17,72939636,72940896,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(8)","HT(6)ht(2)",8,"tandem duplication","meta","17: 64277180-64277098 -> 17: 72940896-72940970","not precise","OTOP3"]
["patient 4",17,69672120,69672487,21,47004076,47004243,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(3)","ht(3)",3,"interchromosomal","meta","17: 32112832-32113197 -> 21: 47004282-47004869","not precise, one breakpoint missed","NoGene"]
["patient 4",17,69672131,69672690,21,36077556,36079034,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(10)","TT(3)tt(7)",10,"interchromosomal","meta","21: 36079690-36079233","only one flank found","CLIC6"]
["patient 4",18,48040416,48041893,18,48169434,48170802,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(3)th(2)",5,"deletion","not determined",null,null,"MAPK4"]
["patient 4",18,76525020,76527683,18,76537880,76540965,"P4_Colon_Normal(0)P4_Colon_Tumor(0)P4_Liver_Normal(0)P4_Liver_Tumor(10)","TH(9)th(1)",10,"deletion","meta","18: 76527666-76527823 -> 18: 76537824-76537916","blunt","NoGene"]
["patient 4",20,5709889,5710952,20,5711237,5712971,"P4_Colon_Normal(0)P4_Colon_Tumor(7)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(5)hh(2)",7,"inverted","not determined",null,null,"NoGene"]
["patient 4",20,14575911,14578354,20,15362152,15363677,"P4_Colon_Normal(0)P4_Colon_Tumor(6)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(3)th(3)",6,"deletion","prim","20: 14578349-14578622 -> 20: 15362009-15362191","insertion of TTTTAATA","MACROD2_NCRNA00227_MACROD2"]
["patient 4",20,14674638,14676954,20,15388631,15391922,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(1)th(4)",5,"deletion","prim","20: 14676895-14677278  -> 20: 15388589-15388709","microhomology GTGACA","MACROD2_MACROD2"]
["patient 4",20,30112996,30116252,20,30340230,30342757,"P4_Colon_Normal(0)P4_Colon_Tumor(9)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HT(4)ht(5)",9,"tandem duplication","prim","20: 30113051-30112964 -> 20: 30342812-30342734","microhomology GC","HM13_TPX2"]
["patient 4",20,42881540,42883261,20,44091225,44093313,"P4_Colon_Normal(0)P4_Colon_Tumor(6)P4_Liver_Normal(0)P4_Liver_Tumor(0)","HH(3)hh(3)",6,"inverted","not determined",null,null,"GDAP1L1"]
["patient 4",20,43974701,43976700,20,45117980,45120314,"P4_Colon_Normal(0)P4_Colon_Tumor(12)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TT(6)tt(6)",12,"inverted","prim","20: 43976664-43976758 -> 20: 45120809-45120313","microhomology GC","SDC4_ZNF840"]
["patient 4","X",6785822,6787846,"X",6825664,6827028,"P4_Colon_Normal(0)P4_Colon_Tumor(5)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(3)th(2)",5,"deletion","not determined",null,null,"NoGene"]
["patient 4","X",7079832,7081921,"X",8083394,8085559,"P4_Colon_Normal(0)P4_Colon_Tumor(7)P4_Liver_Normal(0)P4_Liver_Tumor(0)","TH(2)th(5)",7,"deletion","prim","X: 7082235-7082325 -> X: 8083180-8083430","microhomology TG","NoGene"]