{"text_format":"3","workbook":"xls","n_sheets":1,"sheets":["RT-PCR validation"],"read":"whole","date_system":"1904","formulas":"cached_only"}

{"sheet":"RT-PCR validation","index":0,"n_rows":30,"n_cols":12,"rows_kept":30,"flags":["formulas_cached_only"]}
["Ensemble Gene ID","Gene symbol","Target Exon positiona (hg19)","Left primer","Right primer","predicted size(Skipping)","predicted size(Inclusion)","SNP IDb","SNP position","RNA-Seq P-val","RT-PCR P-val","SNP type"]
["ENSG00000117054","ACADM","+chr1:76194085-76194173","CGTCGCCGTCCAGCTCGACCAGGCCGTGACCCGTGTATTATT","TGGGATGATTTCCTCTCTGG",145,233,"rs7524467",76194054,{"v":5.83e-08,"d":"5.83E-08"},{"v":0.008986411,"d":"8.99E-03"},"<=300bp"]
["ENSG00000135778","NTPCR","+chr1:233091302-233091465","CGTCGCCGTCCAGCTCGACCAGGACCTGACCTGAATTGCGAC","AAGACGGGTAGTGCCAACTG",194,357,"rs12725558",233091463,{"v":1.95e-07,"d":"1.95E-07"},{"v":8.84e-13,"d":"8.84E-13"},"5' SS"]
["ENSG00000162929","KIAA1841","+chr2:61384996-61385147","CGTCGCCGTCCAGCTCGACCAGAGACTCGTGGGGGAAAGG","CTTGAACTGGGAAGGCAGAG",102,253,"rs1729671",61385105,{"v":1.49e-07,"d":"1.49E-07"},{"v":1.69e-09,"d":"1.69E-09"},"exon"]
["ENSG00000240344","PPIL3","-chr2:201742219-201742327","CGTCGCCGTCCAGCTCGACCAGAACTGGAAGAGGAGGCAACA","GGTGTTCGGGCCATTATTAG",115,223,"rs2136600",201742345,{"v":1.79e-07,"d":"1.79E-07"},{"v":1.24e-31,"d":"1.24E-31"},"3' SS"]
["ENSG00000079263","SP140","+chr2:231110577-231110655","CGTCGCCGTCCAGCTCGACCAGGGAGGAGATGCTGAAGATGC","ACAGAGCCCCTTCTCTGGTT",258,336,"rs28445040",231110582,{"v":1.69e-14,"d":"1.69E-14"},{"v":1.43e-28,"d":"1.43E-28"},"exon"]
["ENSG00000135916","ITM2C","+chr2:231738131-231738272","CGTCGCCGTCCAGCTCGACCAGACCGAGATCCTGCTGACG","CATCCTCTTCCAGCTCCATC",118,259,"rs2289235",231738168,{"v":3.59e-11,"d":"3.59E-11"},{"v":1.71e-20,"d":"1.71E-20"},"exon"]
["ENSG00000173200","PARP15","+chr3:122345673-122345880","CGTCGCCGTCCAGCTCGACCAGTACACATCGGTTTCCCTTCC","TTCGGGTGAACTTGTCCTTT",142,349,"rs17208928",122345870,{"v":2.44e-06,"d":"2.44E-06"},{"v":2.32e-19,"d":"2.32E-19"},"exon"]
["ENSG00000153113","CAST","+chr5:96076448-96076487","CGTCGCCGTCCAGCTCGACCAGCCACCTACATAGAGGAATTGGG","TTCAGTTTTCTTTCCAGCAGC",155,194,"rs7724759",96076487,{"v":2.83e-31,"d":"2.83E-31"},{"v":1.46e-83,"d":"1.46E-83"},"5' SS"]
["ENSG00000164308","ERAP2","+chr5:96235824-96235949","CGTCGCCGTCCAGCTCGACCAGCATTCGGATCCCAAGATGAC","GGAGTGAACACCCGTCTTGT",136,192,"rs251339",96235038,{"v":2.06e-11,"d":"2.06E-11"},{"v":1.93e-10,"d":"1.93E-10"},">300bp"]
["ENSG00000146918","NCAPG2","-chr7:158443523-158443664","CGTCGCCGTCCAGCTCGACCAGTGTATTGCACGGAGCTTCAG","ATGCTCTGGAGGGGTAAGC",81,222,"rs1466210",158444975,{"v":8.61e-09,"d":"8.61E-09"},{"v":4.28e-08,"d":"4.28E-08"},">300bp"]
["ENSG00000120899","PTK2B","+chr8:27308559-27308595","CGTCGCCGTCCAGCTCGACCAGGAGGACTTCATCCAACCCAG","GTAGCCGACCTCCTTCTCTG",168,204,"rs2251430",27308849,{"v":8.31e-11,"d":"8.31E-11"},{"v":1.44e-26,"d":"1.44E-26"},"<=300bp"]
["ENSG00000173915","USMG5","-chr10:105153955-105154151","CGTCGCCGTCCAGCTCGACCAGCCGAGAGGTGGTTACATTCG","CTTTCTGGACCTGCCATGAT",84,280,"rs7911488",105154089,{"v":3.5e-12,"d":"3.50E-12"},{"v":4.11e-52,"d":"4.11E-52"},"exon"]
["ENSG00000174547","MRPL11","-chr11:66206102-66206319","CGTCGCCGTCCAGCTCGACCAGCTCCCCTGAGGTGAACTGAA","TGCAAAACTGGTTGATGGAA",110,188,"rs11110",66206169,{"v":8.98e-07,"d":"8.98E-07"},{"v":3.26e-08,"d":"3.26E-08"},"exon"]
["ENSG00000069493","CLEC2D","+chr12:9833518-9833629","CGTCGCCGTCCAGCTCGACCAGAGAAACTGGAGGCAAAATGC","TACTGATGGCTCTTGATGGC",112,223,"rs3764022",9833524,{"v":3.72e-07,"d":"3.72E-07"},{"v":8.53e-20,"d":"8.53E-20"},"exon"]
["ENSG00000089157","RPLP0","-chr12:120636356-120636542","CGTCGCCGTCCAGCTCGACCAGCACTAAAATCTCCAGGGGCA","CAGGACTCGTTTGTACCCGT",130,316,"rs2074540",120636549,{"v":5.7e-12,"d":"5.70E-12"},{"v":3.02e-27,"d":"3.02E-27"},"3' SS"]
["ENSG00000100461","RBM23","-chr14:23374814-23374868","CGTCGCCGTCCAGCTCGACCAGTCGACATGGTAGTGAGTCGC","ATACAGAAAACTGTGCGGGC",138,192,"rs2295682",23374862,{"v":2.68e-10,"d":"2.68E-10"},{"v":4.41e-45,"d":"4.41E-45"},"exon"]
["ENSG00000157379","DHRS1","-chr14:24760761-24760831","CGTCGCCGTCCAGCTCGACCAGGGGGATTGTGCAGACAGAAC","GCACCTTACCACTCAGGCTC",109,179,"rs10134537",24760764,{"v":3.51e-09,"d":"3.51E-09"},{"v":1.83e-34,"d":"1.83E-34"},"5' SS"]
["ENSG00000140379","BCL2A1","-chr15:80259978-80260034","CGTCGCCGTCCAGCTCGACCAGAGACGGCATCATTAACTGGG","TGGAGTGTCCTTTCTGGTCA",306,362,"rs8026803",80260014,{"v":3.41e-07,"d":"3.41E-07"},{"v":1.27e-07,"d":"1.27E-07"},"exon"]
["ENSG00000007541","PIGQ","+chr16:632247-632309","CGTCGCCGTCCAGCTCGACCAGATCTGCTCGTGGACCTCATC","CATCTGCTCACTCCCAATGA",410,472,"rs8642",633764,{"v":1.19e-06,"d":"1.19E-06"},{"v":0.000504,"d":"5.04E-04"},">300bp"]
["ENSG00000176974","SHMT1","-chr17:18238872-18238989","CGTCGCCGTCCAGCTCGACCAGAGATTGCAGATGAGAACGGG","CATAGCTTGCTTCAGTGCCA",197,314,"rs2273028",18239012,{"v":8.26e-07,"d":"8.26E-07"},{"v":4.31e-17,"d":"4.31E-17"},"<=300bp"]
["ENSG00000168961","LGALS9","+chr17:25970550-25970646","CGTCGCCGTCCAGCTCGACCAGGGACACCATCTCCGTCAATG","AATGGGAGCCGGGTTG",88,184,"rs4795835",25970778,{"v":2e-06,"d":"2.00E-06"},{"v":7.29e-09,"d":"7.29E-09"},"<=300bp"]
["ENSG00000221887","HMSD","+chr18:61620587-61620761","CGTCGCCGTCCAGCTCGACCAGGTCTCACTTCGCTCCTGGG","TCTCCATCTTCACCTCCGAT",77,251,"rs9945924",61620766,{"v":1.97e-22,"d":"1.97E-22"},{"v":7.51e-43,"d":"7.51E-43"},"5' SS"]
["ENSG00000105341","ATP5SL","-chr19:41939176-41939339","CGTCGCCGTCCAGCTCGACCAGTTTCTGTGAAGTGCCTGTCG","TATCTGAGTGAGGCCAGGGT",138,301,"rs1043413",41939297,{"v":3.63e-11,"d":"3.63E-11"},{"v":1.53e-17,"d":"1.53E-17"},"exon"]
["ENSG00000125877","ITPA","+chr20:3193814-3193872","CGTCGCCGTCCAGCTCGACCAGCTGTCACTGGACGCCAAGGAG","TGGTGGAGACCTTCAGGCTTTAAC","238/282/296","361/310","rs6084305",3193508,{"v":3.59e-06,"d":"3.59E-06"},{"v":5.95e-06,"d":"5.95E-06"},">300bp"]
["ENSG00000157601","MX1","+chr21:42821063-42821222","CGTCGCCGTCCAGCTCGACCAGGAGGAAGACATTCGGCTGTT","GCGGTTCTGTGGAGGTTAAA",155,314,"rs2070229",42821113,{"v":3.58e-06,"d":"3.58E-06"},{"v":8.04e-17,"d":"8.04E-17"},"exon"]
["ENSG00000242247","ARFGAP3","-chr22:43206818-43206950","CGTCGCCGTCCAGCTCGACCAGTGCAGACCATAGAGCAGGAA","CTTCTTCTGGGCCTCATCTG",158,290,"rs1018448",43206950,{"v":5.84e-08,"d":"5.84E-08"},{"v":5.53e-22,"d":"5.53E-22"},"3' SS"]
[]
["a","Exon coordinates are in hg19 with start position 0 based and end position 1 based."]
["b","The significant sQTL SNP genotyped in HAPMAP that is closest to the exon splice site"]