#!/bin/bash
# This script will create an exectuable jar file for the java portion of the THetA code 

echo "Removing previous builds"
rm -rf bin
mkdir bin

echo "Installing runTHetA..."
ant

echo "Creating executable for visualization code..."
cp matlab/mainMethod/plotResultsFromFile.m bin

echo "Creating executable for multiple tumor populations..."
cp matlab/mainMethod/runTHetAMultipleTumorPopulations.m bin

echo "Installation complete.  Check for errors."
