{"text_format":"3","workbook":"xlsx","n_sheets":2,"sheets":["Description","SRINT_results"],"read":"whole","date_system":"1900"}

{"sheet":"Description","index":0,"n_rows":60,"n_cols":2,"rows_kept":60}
["Chrom","Chromosome"]
["hg38_Position","Editing site position (based on hg38 Reference genome)"]
["Ref_Base","Base at the specific site according to Reference Genome (A/T/C/G)"]
["Alt_Base","Alternative Base at the specific site identified by RNA-seq analysis (G/C/T/A)"]
["Coding","Editing site within coding region (Yes/No)"]
["Gene","Gene symbol"]
["Sequence_Ontology","Genomic region where editing event is detected (intron_variant/2kb_downstream_variant/2kb_upstream_variant/3_prime_UTR_variant/5_prime_UTR_variant/lnc_RNA/miRNA/snRNA/missense_variant/synonymous_variant/NMD_transcript_variant/processed_transcript/NA)"]
["Protein_Change","Describes the aa position and change when editing results in recoding "]
["CNTR_Count","Number of samples from the control group presenting the editing event"]
["ALS_Count","Number of samples from the ALS group presenting the editing event"]
["CNTR_Percentage","Percentage of samples from the control group presenting the editing event"]
["ALS_Percentage","Percentage of samples from the ALS group presenting the editing event"]
["CNTR_REFDEPTH","Number of Ref Base calls in the control group "]
["ALS_REFDEPTH","Number of Ref Base calls in the ALS group "]
["CNTR_ALTDEPTH","Number of Alt  Base calls in the control group "]
["ALS_ALTDEPTH","Number of Alt  Base calls in the ALS group "]
["CNTR_COVERAGE","Number of Ref + Alt Base calls in the control group "]
["ALS_COVERAGE","Number of Ref + Alt Base calls in the ALS group "]
["CNTR_MEAN_FREQUENCY","Mean editing frequency in the control group"]
["ALS_MEAN_FREQUENCY","Mean editing frequency in the ALS group"]
["CNTRvsALS_T_TEST_PVALUE","t-test value comparing editing frequency between control and ALS groups"]
["Samples_Count","Number of samples presenting the editing event"]
["Samples","Actual samples presenting the editing event"]
["hg19_Chrom","Chromosome"]
["hg19_Pos","Editing site position (based on hg19 Reference genome)"]
["Clinpred_Score","Provides ClinPred  scores (<0.5 benign, > 0.5 pathogenic)"]
["Clinvar_Significance","Classification of editing events according to ClinVar (Benign/Likely Benign/Uncertain significance/NA)"]
["Clinvar_Disease","Reports of human variations classified for diseases"]
["Encode_TFBS_Factor","Reports Transcription factor binding motifs within the editing site"]
["Ensemble_Regulatory_Features","Annotated regulatory features including the editing site"]
["Ensemble_Regulatory_Features_ID","Ensembl ID for regulatory features including the editing site"]
["TYPE","Editing type (hyper/regular/regular_and_hyper)"]
["STRAND","strand where the edited transcript is located"]
["MEDIATOR","Editing enzyme family mediating the detected editing event (ADAR/APOBEC)"]
["DJ","Distance of the RNA-Editing site position to the closest exon-exon junction"]
["Homopolymer","Denotes whether editing occurs in homopolymeric regions (0/1)"]
["Entropy","The entropy of sequence in window of length 7 centered at the RNA-Editing site position"]
["RNAEDIT","Denotes whether editing event has been reported in RNA editing databases (A=RediPortal/R=Radar/D=Darned/NA)"]
["EDTYPE","Denotes whether editing site occurs in repetitive or non-repetitive regions (ALU/REP/NONREP/NA)"]
["EDREGION","Reports the genomic region where editing occurs"]
["Sample X_REFDEPTH","Number of Reference base calls in the specific sample (sample X)"]
["Sample X_ALTDEPTH","Number of Alternative base calls in the specific sample (sample X)"]
["Sample X_FREQUENCY","Frequency of editing in the specific sample (sample X)"]
["Sample X_COVERAGE","Number of Reference + Alternative base calls in the specific sample"]
["Human_Phenotype_ID","Phenotypic abnormalities based on Human Phenotype Ontology, HPO  https://hpo.jax.org/app/"]
["Human_Phenotype_Term","Human phenotype abnormality term"]
["NCBI_Gene_Description","Gene description based on NCBI"]
["Pseudogene_Hugo","Pseudogene based on  Hugo"]
["Pseudogene_Transcript","Pseudogene ensmbl transcript ID"]
["Repeat_Class","Class of repeat elements (SINE/LINE/LTR/NA)"]
["Repeat_Family","Repeat element family (e.g. Alu, L1, MIR)"]
["Repeat_Name","Repeat Name (e.g AluY, L3, MIRc)"]
["dbSNP_rsID","SNP IDs based on dbSNP v.154.0.2"]
["gnomAD3_AF","Allele frequency based on gnomAD (Genome Aggregation Database), v3.0"]
["miRBase_Transcript","Transcript in miRBase"]
["miRBase_ID","miRBase transcript ID"]
["miRBase_Name","miRNA name"]
["miRBase_DerivesFrom","The hairpin precursor sequence to which the mature sequence derives from"]
["ncRNA_Class","class of ncRNA (e.g. lincRNA, miRNA)"]
["ncRNA_Name","name of ncRNA"]

{"sheet":"SRINT_results","index":1,"n_rows":30342,"n_cols":428,"rows_kept":139,"cut":true,"bounds":{"rows_first":62,"rows_last":15,"rows_between":62,"halvings":5}}
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12167879_ALTDEPTH","SRR12167879_FREQUENCY","SRR12167879_COVERAGE","SRR12165792_REFDEPTH","SRR12165792_ALTDEPTH","SRR12165792_FREQUENCY","SRR12165792_COVERAGE","SRR12165815_REFDEPTH","SRR12165815_ALTDEPTH","SRR12165815_FREQUENCY","SRR12165815_COVERAGE","SRR12166180_REFDEPTH","SRR12166180_ALTDEPTH","SRR12166180_FREQUENCY","SRR12166180_COVERAGE","SRR12166237_REFDEPTH","SRR12166237_ALTDEPTH","SRR12166237_FREQUENCY","SRR12166237_COVERAGE","SRR12166246_REFDEPTH","SRR12166246_ALTDEPTH","SRR12166246_FREQUENCY","SRR12166246_COVERAGE","SRR12166264_REFDEPTH","SRR12166264_ALTDEPTH","SRR12166264_FREQUENCY","SRR12166264_COVERAGE","SRR12166310_REFDEPTH","SRR12166310_ALTDEPTH","SRR12166310_FREQUENCY","SRR12166310_COVERAGE","SRR12166321_REFDEPTH","SRR12166321_ALTDEPTH","SRR12166321_FREQUENCY","SRR12166321_COVERAGE","SRR12166331_REFDEPTH","SRR12166331_ALTDEPTH","SRR12166331_FREQUENCY","SRR12166331_COVERAGE","SRR12166346_REFDEPTH","SRR12166346_ALTDEPTH","SRR12166346_FREQUENCY","SRR12166346_COVERAGE","SRR12166554_REFDEPTH","SRR12166554_ALTDEPTH","SRR12166554_FREQUENCY","SRR12166554_COVERAGE","SRR12166659_REFDEPTH","SRR12166659_ALTDEPTH","SRR12166659_FREQUENCY","SRR12166659_COVERAGE","SRR12166682_REFDEPTH","SRR12166682_ALTDEPTH","SRR12166682_FREQUENCY","SRR12166682_COVERAGE","SRR12166736_REFDEPTH","SRR12166736_ALTDEPTH","SRR12166736_FREQUENCY","SRR12166736_COVERAGE","SRR12166740_REFDEPTH","SRR12166740_ALTDEPTH","SRR12166740_FREQUENCY","SRR12166740_COVERAGE","SRR12166747_REFDEPTH","SRR12166747_ALTDEPTH","SRR12166747_FREQUENCY","SRR12166747_COVERAGE","SRR12166748_REFDEPTH","SRR12166748_ALTDEPTH","SRR12166748_FREQUENCY","SRR12166748_COVERAGE","SRR12166783_REFDEPTH","SRR12166783_ALTDEPTH","SRR12166783_FREQUENCY","SRR12166783_COVERAGE","SRR12166832_REFDEPTH","SRR12166832_ALTDEPTH","SRR12166832_FREQUENCY","SRR12166832_COVERAGE","SRR12166834_REFDEPTH","SRR12166834_ALTDEPTH","SRR12166834_FREQUENCY","SRR12166834_COVERAGE","SRR12166869_REFDEPTH","SRR12166869_ALTDEPTH","SRR12166869_FREQUENCY","SRR12166869_COVERAGE","SRR12166904_REFDEPTH","SRR12166904_ALTDEPTH","SRR12166904_FREQUENCY","SRR12166904_COVERAGE","SRR12166910_REFDEPTH","SRR12166910_ALTDEPTH","SRR12166910_FREQUENCY","SRR12166910_COVERAGE","SRR12166912_REFDEPTH","SRR12166912_ALTDEPTH","SRR12166912_FREQUENCY","SRR12166912_COVERAGE","SRR12166924_REFDEPTH","SRR12166924_ALTDEPTH","SRR12166924_FREQUENCY","SRR12166924_COVERAGE","SRR12166967_REFDEPTH","SRR12166967_ALTDEPTH","SRR12166967_FREQUENCY","SRR12166967_COVERAGE","SRR12166971_REFDEPTH","SRR12166971_ALTDEPTH","SRR12166971_FREQUENCY","SRR12166971_COVERAGE","SRR12166978_REFDEPTH","SRR12166978_ALTDEPTH","SRR12166978_FREQUENCY","SRR12166978_COVERAGE","SRR12167002_REFDEPTH","SRR12167002_ALTDEPTH","SRR12167002_FREQUENCY","SRR12167002_COVERAGE","SRR12167012_REFDEPTH","SRR12167012_ALTDEPTH","SRR12167012_FREQUENCY","SRR12167012_COVERAGE","SRR12167015_REFDEPTH","SRR12167015_ALTDEPTH","SRR12167015_FREQUENCY","SRR12167015_COVERAGE","SRR12167177_REFDEPTH","SRR12167177_ALTDEPTH","SRR12167177_FREQUENCY","SRR12167177_COVERAGE","SRR12167206_REFDEPTH","SRR12167206_ALTDEPTH","SRR12167206_FREQUENCY","SRR12167206_COVERAGE","SRR12167222_REFDEPTH","SRR12167222_ALTDEPTH","SRR12167222_FREQUENCY","SRR12167222_COVERAGE","SRR12167247_REFDEPTH","SRR12167247_ALTDEPTH","SRR12167247_FREQUENCY","SRR12167247_COVERAGE","SRR12167267_REFDEPTH","SRR12167267_ALTDEPTH","SRR12167267_FREQUENCY","SRR12167267_COVERAGE","SRR12167270_REFDEPTH","SRR12167270_ALTDEPTH","SRR12167270_FREQUENCY","SRR12167270_COVERAGE","SRR12167279_REFDEPTH","SRR12167279_ALTDEPTH","SRR12167279_FREQUENCY","SRR12167279_COVERAGE","SRR12167280_REFDEPTH","SRR12167280_ALTDEPTH","SRR12167280_FREQUENCY","SRR12167280_COVERAGE","SRR12167304_REFDEPTH","SRR12167304_ALTDEPTH","SRR12167304_FREQUENCY","SRR12167304_COVERAGE","SRR12167351_REFDEPTH","SRR12167351_ALTDEPTH","SRR12167351_FREQUENCY","SRR12167351_COVERAGE","SRR12167395_REFDEPTH","SRR12167395_ALTDEPTH","SRR12167395_FREQUENCY","SRR12167395_COVERAGE","SRR12167404_REFDEPTH","SRR12167404_ALTDEPTH","SRR12167404_FREQUENCY","SRR12167404_COVERAGE","SRR12167407_REFDEPTH","SRR12167407_ALTDEPTH","SRR12167407_FREQUENCY","SRR12167407_COVERAGE","SRR12167468_REFDEPTH","SRR12167468_ALTDEPTH","SRR12167468_FREQUENCY","SRR12167468_COVERAGE","Human_Phenotype_ID","Human_Phenotype_Term","NCBI_Gene_Description","Pseudogene_Hugo","Pseudogene_Transcript","Repeat_Class","Repeat_Family","Repeat_Name","dbSNP_rsID","gnomAD3_AF","miRBase_Transcript","miRBase_ID","miRBase_Name","miRBase_DerivesFrom","ncRNA_Class","ncRNA_Name"]
["chr1",1316158,"T","C","No","INTS11","intron_variant","NA",33,10,0.688,0.222,773,202,341,90,1114,292,0.207,0.066,0,43,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167276;SRR12167307;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12165815;SRR12166237;SRR12166264;SRR12166321;SRR12166331;SRR12166682;SRR12166783;SRR12167395;SRR12167404;SRR12167407","chr1",1251538,"NA","NA","NA","[\"POLR2A\"]","promoter_flanking_region","ENSR00000344578","regular_and_hyper","-","ADAR",5781,0,1.95,"A,R,D","ALU","intronic",25,9,0.265,34,33,5,0.132,38,16,9,0.36,25,22,4,0.154,26,16,5,0.238,21,22,7,0.241,29,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,9,0.375,24,0,0,0,0,0,0,0,0,0,0,0,0,21,8,0.276,29,0,0,0,0,27,13,0.325,40,18,8,0.308,26,16,7,0.304,23,22,3,0.12,25,0,0,0,0,34,18,0.346,52,33,9,0.214,42,24,13,0.351,37,30,7,0.189,37,16,4,0.2,20,32,11,0.256,43,41,23,0.359,64,32,13,0.289,45,0,0,0,0,16,11,0.407,27,24,8,0.25,32,0,0,0,0,0,0,0,0,0,0,0,0,29,23,0.442,52,27,11,0.289,38,25,13,0.342,38,18,14,0.438,32,23,7,0.233,30,30,12,0.286,42,18,14,0.438,32,20,9,0.31,29,15,16,0.516,31,18,7,0.28,25,15,11,0.423,26,0,0,0,0,0,0,0,0,22,18,0.45,40,0,0,0,0,17,6,0.261,23,0,0,0,0,11,9,0.45,20,0,0,0,0,19,10,0.345,29,20,3,0.13,23,0,0,0,0,0,0,0,0,0,0,0,0,19,5,0.208,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23,18,0.439,41,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,8,0.308,26,24,4,0.143,28,29,9,0.237,38,0,0,0,0,"NA","NA","The Integrator complex contains at least 12 subunits and associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates the 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690). INTS11, or CPSF3L, is the catalytic subunit of the Integrator complex (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]","NA","NA","SINE","Alu","AluSz","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1316160,"T","C","No","INTS11","intron_variant","NA",33,11,0.688,0.244,821,228,289,89,1110,317,0.181,0.065,0.0001,44,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167104;SRR12167141;SRR12167145;SRR12167276;SRR12167307;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12165815;SRR12166237;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166682;SRR12166783;SRR12167395;SRR12167404;SRR12167407","chr1",1251540,"NA","NA","NA","[\"POLR2A\"]","promoter_flanking_region","ENSR00000344578","regular_and_hyper","-","ADAR",5783,0,1.842,"A,R,D","ALU","intronic",29,6,0.171,35,29,8,0.216,37,14,11,0.44,25,19,9,0.321,28,16,5,0.238,21,18,10,0.357,28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,8,0.32,25,15,7,0.318,22,0,0,0,0,0,0,0,0,0,0,0,0,22,7,0.241,29,0,0,0,0,29,11,0.275,40,20,6,0.231,26,16,7,0.304,23,20,5,0.2,25,0,0,0,0,43,8,0.157,51,28,14,0.333,42,28,8,0.222,36,30,7,0.189,37,0,0,0,0,32,11,0.256,43,53,11,0.172,64,31,12,0.279,43,0,0,0,0,22,5,0.185,27,23,9,0.281,32,0,0,0,0,0,0,0,0,0,0,0,0,33,19,0.365,52,27,10,0.27,37,28,11,0.282,39,27,5,0.156,32,24,6,0.2,30,24,17,0.415,41,20,12,0.375,32,22,7,0.241,29,25,5,0.167,30,20,5,0.2,25,17,7,0.292,24,0,0,0,0,0,0,0,0,28,12,0.3,40,0,0,0,0,19,4,0.174,23,0,0,0,0,17,3,0.15,20,21,5,0.192,26,18,10,0.357,28,15,7,0.318,22,0,0,0,0,0,0,0,0,0,0,0,0,20,3,0.13,23,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25,15,0.375,40,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,9,0.346,26,25,5,0.167,30,23,16,0.41,39,0,0,0,0,"NA","NA","The Integrator complex contains at least 12 subunits and associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates the 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690). INTS11, or CPSF3L, is the catalytic subunit of the Integrator complex (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]","NA","NA","SINE","Alu","AluSz","rs927976368","6.98041e-06","NA","NA","NA","NA","NA","NA"]
["chr1",1316230,"T","C","No","INTS11","intron_variant","NA",31,12,0.646,0.267,796,253,253,84,1049,337,0.158,0.066,0.0008,43,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166185;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166494;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166783;SRR12166924;SRR12167304;SRR12167395;SRR12167404;SRR12167407","chr1",1251610,"NA","NA","NA","[\"POLR2A\"]","promoter_flanking_region","ENSR00000344578","regular","-","ADAR",5853,0,1.95,"A,R,D","ALU","intronic",36,4,0.1,40,22,11,0.333,33,23,8,0.258,31,18,10,0.357,28,0,0,0,0,16,9,0.36,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21,11,0.344,32,15,6,0.286,21,0,0,0,0,0,0,0,0,0,0,0,0,14,9,0.391,23,0,0,0,0,26,12,0.316,38,0,0,0,0,18,7,0.28,25,0,0,0,0,0,0,0,0,40,9,0.184,49,31,6,0.162,37,38,5,0.116,43,36,11,0.234,47,0,0,0,0,34,16,0.32,50,49,16,0.246,65,23,10,0.303,33,19,4,0.174,23,22,6,0.214,28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25,13,0.342,38,28,4,0.125,32,25,6,0.194,31,27,3,0.1,30,26,6,0.188,32,26,8,0.235,34,23,9,0.281,32,29,5,0.147,34,25,8,0.242,33,24,3,0.111,27,22,9,0.29,31,15,9,0.375,24,0,0,0,0,29,7,0.194,36,0,0,0,0,0,0,0,0,16,7,0.304,23,17,5,0.227,22,16,6,0.273,22,24,6,0.2,30,20,8,0.286,28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35,9,0.205,44,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,7,0.292,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21,3,0.125,24,0,0,0,0,20,9,0.31,29,17,4,0.19,21,21,13,0.382,34,0,0,0,0,"NA","NA","The Integrator complex contains at least 12 subunits and associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates the 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690). INTS11, or CPSF3L, is the catalytic subunit of the Integrator complex (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]","NA","NA","SINE","Alu","AluSz","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1316251,"T","C","No","INTS11","intron_variant","NA",29,9,0.604,0.2,699,173,189,71,888,244,0.129,0.058,0.0056,38,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166185;SRR12166268;SRR12166459;SRR12166464;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167397;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166246;SRR12166321;SRR12166331;SRR12166783;SRR12166924;SRR12167304;SRR12167404;SRR12167407","chr1",1251631,"NA","NA","NA","[\"POLR2A\"]","promoter_flanking_region","ENSR00000344578","regular","-","ADAR",5874,0,1.842,"A,R,D","ALU","intronic",27,6,0.182,33,16,12,0.429,28,25,4,0.138,29,22,6,0.214,28,0,0,0,0,17,6,0.261,23,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23,6,0.207,29,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24,3,0.111,27,23,6,0.207,29,0,0,0,0,0,0,0,0,0,0,0,0,36,9,0.2,45,18,9,0.333,27,36,6,0.143,42,34,8,0.19,42,0,0,0,0,31,11,0.262,42,41,10,0.196,51,25,6,0.194,31,15,6,0.286,21,21,5,0.192,26,18,2,0.1,20,0,0,0,0,0,0,0,0,0,0,0,0,20,12,0.375,32,0,0,0,0,18,4,0.182,22,24,5,0.172,29,26,4,0.133,30,25,5,0.167,30,30,6,0.167,36,26,4,0.133,30,25,11,0.306,36,19,3,0.136,22,19,7,0.269,26,15,7,0.318,22,0,0,0,0,23,10,0.303,33,0,0,0,0,0,0,0,0,13,7,0.35,20,0,0,0,0,0,0,0,0,20,5,0.2,25,16,9,0.36,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27,13,0.325,40,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,8,0.333,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19,5,0.208,24,0,0,0,0,0,0,0,0,15,5,0.25,20,24,9,0.273,33,0,0,0,0,"NA","NA","The Integrator complex contains at least 12 subunits and associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates the 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690). INTS11, or CPSF3L, is the catalytic subunit of the Integrator complex (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]","NA","NA","SINE","Alu","AluSz","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1316461,"T","C","No","INTS11","intron_variant","NA",33,8,0.688,0.178,794,152,253,54,1047,206,0.17,0.049,0,41,"SRR12165859;SRR12166096;SRR12166110;SRR12166185;SRR12166187;SRR12166268;SRR12166290;SRR12166387;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167104;SRR12167141;SRR12167145;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166310;SRR12166321;SRR12166331;SRR12166783;SRR12166924;SRR12167407","chr1",1251841,"NA","NA","NA","[\"POLR2A\"]","promoter_flanking_region","ENSR00000344578","regular_and_hyper","-","ADAR",6084,0,1.379,"A,R,D","ALU","intronic",29,7,0.194,36,17,9,0.346,26,0,0,0,0,22,9,0.29,31,0,0,0,0,19,8,0.296,27,15,5,0.25,20,0,0,0,0,0,0,0,0,0,0,0,0,23,7,0.233,30,18,9,0.333,27,0,0,0,0,14,8,0.364,22,0,0,0,0,19,9,0.321,28,0,0,0,0,29,7,0.194,36,21,6,0.222,27,8,15,0.652,23,0,0,0,0,0,0,0,0,32,12,0.273,44,22,10,0.312,32,35,10,0.222,45,22,9,0.29,31,0,0,0,0,26,10,0.278,36,36,14,0.28,50,27,3,0.1,30,0,0,0,0,0,0,0,0,22,4,0.154,26,0,0,0,0,0,0,0,0,21,4,0.16,25,19,6,0.24,25,31,10,0.244,41,35,9,0.205,44,28,9,0.243,37,25,3,0.107,28,26,5,0.161,31,27,7,0.206,34,29,5,0.147,34,28,7,0.2,35,18,6,0.25,24,18,5,0.217,23,33,6,0.154,39,0,0,0,0,36,6,0.143,42,0,0,0,0,15,5,0.25,20,0,0,0,0,0,0,0,0,14,7,0.333,21,22,4,0.154,26,19,6,0.24,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,4,0.182,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11,11,0.5,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,11,0.393,28,0,0,0,0,"NA","NA","The Integrator complex contains at least 12 subunits and associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates the 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690). INTS11, or CPSF3L, is the catalytic subunit of the Integrator complex (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]","NA","NA","SINE","Alu","AluSq2","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1316464,"T","C","No","INTS11","intron_variant","NA",34,8,0.708,0.178,725,146,362,61,1087,207,0.237,0.054,0,42,"SRR12165859;SRR12166096;SRR12166110;SRR12166185;SRR12166187;SRR12166268;SRR12166290;SRR12166387;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167104;SRR12167141;SRR12167145;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166783;SRR12166924;SRR12167407","chr1",1251844,"NA","NA","NA","[\"POLR2A\"]","promoter_flanking_region","ENSR00000344578","regular_and_hyper","-","ADAR",6087,0,1.379,"A,R,D","ALU","intronic",28,11,0.282,39,15,11,0.423,26,0,0,0,0,17,14,0.452,31,0,0,0,0,14,13,0.481,27,12,9,0.429,21,0,0,0,0,0,0,0,0,0,0,0,0,20,11,0.355,31,17,12,0.414,29,0,0,0,0,11,10,0.476,21,0,0,0,0,19,10,0.345,29,0,0,0,0,20,17,0.459,37,17,10,0.37,27,7,17,0.708,24,21,3,0.125,24,0,0,0,0,26,21,0.447,47,22,12,0.353,34,31,13,0.295,44,21,10,0.323,31,0,0,0,0,22,14,0.389,36,34,17,0.333,51,25,5,0.167,30,0,0,0,0,0,0,0,0,20,5,0.2,25,0,0,0,0,0,0,0,0,21,4,0.16,25,17,8,0.32,25,30,13,0.302,43,33,10,0.233,43,27,11,0.289,38,24,4,0.143,28,25,7,0.219,32,22,13,0.371,35,24,10,0.294,34,21,14,0.4,35,16,7,0.304,23,17,7,0.292,24,29,9,0.237,38,0,0,0,0,35,9,0.205,44,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,6,0.286,21,21,5,0.192,26,18,7,0.28,25,15,5,0.25,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,5,0.227,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10,12,0.545,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,12,0.444,27,0,0,0,0,"NA","NA","The Integrator complex contains at least 12 subunits and associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates the 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690). INTS11, or CPSF3L, is the catalytic subunit of the Integrator complex (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]","NA","NA","SINE","Alu","AluSq2","rs997366674","1.39682e-05","NA","NA","NA","NA","NA","NA"]
["chr1",1316467,"T","C","No","INTS11","intron_variant","NA",33,7,0.688,0.156,776,136,263,48,1039,184,0.175,0.043,0,40,"SRR12165859;SRR12166096;SRR12166110;SRR12166185;SRR12166187;SRR12166268;SRR12166290;SRR12166387;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167104;SRR12167141;SRR12167145;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166310;SRR12166321;SRR12166331;SRR12166783;SRR12166924;SRR12167407","chr1",1251847,"NA","NA","NA","[\"POLR2A\"]","promoter_flanking_region","ENSR00000344578","regular_and_hyper","-","ADAR",6090,0,1.379,"A,D","ALU","intronic",29,9,0.237,38,14,11,0.44,25,0,0,0,0,20,11,0.355,31,0,0,0,0,19,8,0.296,27,16,5,0.238,21,0,0,0,0,0,0,0,0,0,0,0,0,24,7,0.226,31,20,9,0.31,29,0,0,0,0,15,6,0.286,21,0,0,0,0,19,8,0.296,27,0,0,0,0,23,13,0.361,36,21,6,0.222,27,10,13,0.565,23,0,0,0,0,0,0,0,0,30,13,0.302,43,22,9,0.29,31,37,8,0.178,45,25,7,0.219,32,0,0,0,0,26,10,0.278,36,33,16,0.327,49,27,3,0.1,30,0,0,0,0,0,0,0,0,20,4,0.167,24,0,0,0,0,0,0,0,0,20,4,0.167,24,18,7,0.28,25,32,11,0.256,43,35,8,0.186,43,28,9,0.243,37,23,4,0.148,27,27,5,0.156,32,26,6,0.188,32,24,9,0.273,33,27,8,0.229,35,19,5,0.208,24,17,4,0.19,21,30,7,0.189,37,0,0,0,0,37,6,0.14,43,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,6,0.286,21,23,3,0.115,26,16,7,0.304,23,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,4,0.182,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11,11,0.5,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,11,0.407,27,0,0,0,0,"NA","NA","The Integrator complex contains at least 12 subunits and associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates the 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690). INTS11, or CPSF3L, is the catalytic subunit of the Integrator complex (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]","NA","NA","SINE","Alu","AluSq2","rs144848405",0.00189214,"NA","NA","NA","NA","NA","NA"]
["chr1",1317343,"T","C","No","INTS11","intron_variant","NA",27,7,0.562,0.156,580,145,216,54,796,199,0.151,0.044,0.0002,34,"SRR12165859;SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166494;SRR12166753;SRR12166759;SRR12166823;SRR12167145;SRR12167315;SRR12167397;SRR12167499;SRR12167511;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166310;SRR12166321;SRR12166331;SRR12166748;SRR12166783;SRR12167407","chr1",1252723,"NA","NA","NA","NA","promoter_flanking_region","ENSR00000344578","hyper","-","ADAR",6966,0,1.842,"A,R,D","ALU","intronic",26,5,0.161,31,12,9,0.429,21,16,12,0.429,28,0,0,0,0,18,4,0.182,22,19,10,0.345,29,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22,10,0.312,32,17,4,0.19,21,0,0,0,0,0,0,0,0,0,0,0,0,17,5,0.227,22,18,3,0.143,21,25,12,0.324,37,0,0,0,0,22,12,0.353,34,0,0,0,0,0,0,0,0,40,13,0.245,53,26,8,0.235,34,0,0,0,0,23,11,0.324,34,0,0,0,0,0,0,0,0,0,0,0,0,22,9,0.29,31,0,0,0,0,0,0,0,0,0,0,0,0,14,6,0.3,20,0,0,0,0,0,0,0,0,19,7,0.269,26,29,11,0.275,40,22,11,0.333,33,0,0,0,0,19,4,0.174,23,25,5,0.167,30,24,9,0.273,33,26,9,0.257,35,25,4,0.138,29,18,4,0.182,22,22,13,0.371,35,14,6,0.3,20,0,0,0,0,30,9,0.231,39,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21,3,0.125,24,18,6,0.25,24,26,8,0.235,34,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9,12,0.571,21,25,8,0.242,33,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,8,0.333,24,0,0,0,0,"NA","NA","The Integrator complex contains at least 12 subunits and associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates the 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690). INTS11, or CPSF3L, is the catalytic subunit of the Integrator complex (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]","NA","NA","SINE","Alu","AluSq","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1317963,"T","C","No","INTS11","intron_variant","NA",25,6,0.521,0.133,403,83,306,80,709,163,0.223,0.067,0.0004,31,"SRR12166096;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166753;SRR12166775;SRR12166823;SRR12167141;SRR12167145;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167867;SRR12167869;SRR12167879;SRR12165815;SRR12166310;SRR12166321;SRR12166331;SRR12166783;SRR12167407","chr1",1253343,"NA","NA","NA","NA","promoter_flanking_region","ENSR00000344578","regular_and_hyper","-","ADAR",7586,0,1.95,"A,R,D","ALU","ncRNA_intronic",0,0,0,0,18,5,0.217,23,0,0,0,0,12,9,0.429,21,17,4,0.19,21,18,13,0.419,31,11,11,0.5,22,0,0,0,0,0,0,0,0,0,0,0,0,19,13,0.406,32,17,14,0.452,31,0,0,0,0,0,0,0,0,0,0,0,0,17,8,0.32,25,0,0,0,0,17,17,0.5,34,16,16,0.5,32,22,28,0.56,50,0,0,0,0,0,0,0,0,23,12,0.343,35,0,0,0,0,19,9,0.321,28,16,8,0.333,24,0,0,0,0,0,0,0,0,17,14,0.452,31,13,8,0.381,21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8,17,0.68,25,12,17,0.586,29,22,12,0.353,34,8,14,0.636,22,18,10,0.357,28,25,12,0.324,37,0,0,0,0,14,10,0.417,24,9,11,0.55,20,0,0,0,0,0,0,0,0,15,14,0.483,29,0,0,0,0,10,17,0.63,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,13,0.448,29,11,9,0.45,20,23,15,0.395,38,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9,12,0.571,21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,14,0.5,28,0,0,0,0,"NA","NA","The Integrator complex contains at least 12 subunits and associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates the 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690). INTS11, or CPSF3L, is the catalytic subunit of the Integrator complex (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1317977,"T","C","No","INTS11","intron_variant","NA",26,9,0.542,0.2,153,36,630,216,783,252,0.434,0.172,0.0013,35,"SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166187;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166775;SRR12166823;SRR12167141;SRR12167145;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167867;SRR12167869;SRR12167879;SRR12165815;SRR12166237;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166783;SRR12167280;SRR12167407","chr1",1253357,"NA","NA","NA","NA","promoter_flanking_region","ENSR00000344578","regular_and_hyper","-","ADAR",7600,0,1.379,"A,R,D","ALU","ncRNA_intronic",0,0,0,0,5,16,0.762,21,4,17,0.81,21,0,0,0,0,9,13,0.591,22,7,27,0.794,34,5,19,0.792,24,0,0,0,0,0,0,0,0,0,0,0,0,7,29,0.806,36,2,30,0.938,32,0,0,0,0,0,0,0,0,0,0,0,0,8,18,0.692,26,0,0,0,0,2,38,0.95,40,7,27,0.794,34,7,51,0.879,58,2,20,0.909,22,0,0,0,0,15,28,0.651,43,0,0,0,0,5,23,0.821,28,8,18,0.692,26,0,0,0,0,0,0,0,0,10,22,0.688,32,3,18,0.857,21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,26,0.929,28,6,28,0.824,34,5,30,0.857,35,7,16,0.696,23,7,23,0.767,30,10,28,0.737,38,0,0,0,0,6,19,0.76,25,2,24,0.923,26,0,0,0,0,0,0,0,0,2,22,0.917,24,0,0,0,0,3,25,0.893,28,0,0,0,0,6,21,0.778,27,0,0,0,0,0,0,0,0,5,33,0.868,38,2,21,0.913,23,5,36,0.878,41,2,18,0.9,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,25,0.926,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,17,0.85,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8,20,0.714,28,0,0,0,0,"NA","NA","The Integrator complex contains at least 12 subunits and associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates the 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690). INTS11, or CPSF3L, is the catalytic subunit of the Integrator complex (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1318401,"T","C","No","INTS11","intron_variant","NA",32,12,0.667,0.267,743,257,212,109,955,366,0.15,0.077,0.0092,44,"SRR12165859;SRR12166096;SRR12166184;SRR12166185;SRR12166268;SRR12166290;SRR12166355;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167397;SRR12167499;SRR12167511;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166331;SRR12166783;SRR12166978;SRR12167177;SRR12167280;SRR12167304;SRR12167407","chr1",1253781,"NA","NA","NA","[\"ATF3\", \"CEBPB\", \"EGR1\", \"EP300\", \"FOS\", \"FOSL1\", \"FOSL2\", \"GTF2F1\", \"JUN\", \"JUNB\", \"JUND\", \"MAX\", \"MYC\", \"POLR2A\", \"RCOR1\", \"RFX5\", \"SIN3AK20\", \"USF2\", \"ZNF263\"]","promoter_flanking_region","ENSR00000344578","regular_and_hyper","-","ADAR",8024,0,1.842,"A,R,D","ALU","ncRNA_intronic",18,5,0.217,23,17,5,0.227,22,0,0,0,0,0,0,0,0,21,6,0.222,27,23,3,0.115,26,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29,6,0.171,35,18,7,0.28,25,16,10,0.385,26,0,0,0,0,0,0,0,0,20,5,0.2,25,16,5,0.238,21,22,7,0.241,29,24,4,0.143,28,16,9,0.36,25,19,14,0.424,33,0,0,0,0,34,10,0.227,44,20,6,0.231,26,34,5,0.128,39,34,9,0.209,43,20,7,0.259,27,17,9,0.346,26,26,5,0.161,31,25,5,0.167,30,16,6,0.273,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,6,0.231,26,34,4,0.105,38,28,8,0.222,36,0,0,0,0,16,4,0.2,20,25,5,0.167,30,27,12,0.308,39,32,6,0.158,38,23,4,0.148,27,0,0,0,0,26,10,0.278,36,27,5,0.156,32,0,0,0,0,22,14,0.389,36,0,0,0,0,20,7,0.259,27,20,4,0.167,24,24,8,0.25,32,24,24,0.5,48,0,0,0,0,32,7,0.179,39,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30,5,0.143,35,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,4,0.19,21,0,0,0,0,0,0,0,0,0,0,0,0,15,7,0.318,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,12,0.444,27,19,8,0.296,27,0,0,0,0,0,0,0,0,0,0,0,0,19,9,0.321,28,0,0,0,0,"NA","NA","The Integrator complex contains at least 12 subunits and associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates the 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690). INTS11, or CPSF3L, is the catalytic subunit of the Integrator complex (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]","NA","NA","SINE","Alu","AluJb","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1318423,"T","C","No","INTS11","intron_variant","NA",37,15,0.771,0.333,683,244,446,186,1129,430,0.299,0.145,0.0003,52,"SRR12165859;SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166192;SRR12166268;SRR12166290;SRR12166355;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167315;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166783;SRR12167002;SRR12167177;SRR12167206;SRR12167247;SRR12167280;SRR12167304;SRR12167407","chr1",1253803,"NA","NA","NA","[\"ATF3\", \"CEBPB\", \"EGR1\", \"EP300\", \"FOS\", \"FOSL1\", \"FOSL2\", \"GTF2F1\", \"JUN\", \"JUNB\", \"JUND\", \"MAX\", \"MYC\", \"POLR2A\", \"RCOR1\", \"RFX5\", \"SIN3AK20\", \"USF2\", \"ZNF263\"]","promoter_flanking_region","ENSR00000344578","regular_and_hyper","-","ADAR",8046,0,1.664,"A,R,D","ALU","ncRNA_intronic",14,10,0.417,24,16,10,0.385,26,15,6,0.286,21,0,0,0,0,16,10,0.385,26,14,13,0.481,27,0,0,0,0,0,0,0,0,14,7,0.333,21,0,0,0,0,23,14,0.378,37,18,9,0.333,27,13,11,0.458,24,0,0,0,0,0,0,0,0,19,9,0.321,28,12,8,0.4,20,16,7,0.304,23,23,8,0.258,31,16,14,0.467,30,18,15,0.455,33,0,0,0,0,32,20,0.385,52,22,7,0.241,29,27,18,0.4,45,30,17,0.362,47,21,11,0.344,32,13,15,0.536,28,24,12,0.333,36,16,14,0.467,30,14,6,0.3,20,0,0,0,0,18,2,0.1,20,13,7,0.35,20,0,0,0,0,0,0,0,0,16,12,0.429,28,27,13,0.325,40,25,16,0.39,41,10,11,0.524,21,15,6,0.286,21,15,17,0.531,32,20,23,0.535,43,24,16,0.4,40,14,15,0.517,29,0,0,0,0,18,23,0.561,41,22,14,0.389,36,0,0,0,0,15,18,0.545,33,0,0,0,0,17,12,0.414,29,12,9,0.429,21,22,10,0.312,32,24,20,0.455,44,12,9,0.429,21,24,17,0.415,41,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27,13,0.325,40,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10,11,0.524,21,0,0,0,0,0,0,0,0,12,10,0.455,22,15,5,0.25,20,0,0,0,0,9,11,0.55,20,0,0,0,0,0,0,0,0,0,0,0,0,12,17,0.586,29,16,11,0.407,27,0,0,0,0,0,0,0,0,0,0,0,0,17,13,0.433,30,0,0,0,0,"NA","NA","The Integrator complex contains at least 12 subunits and associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates the 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690). INTS11, or CPSF3L, is the catalytic subunit of the Integrator complex (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]","NA","NA","SINE","Alu","AluJb","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428745,"A","G","No","TMEM88B","2kb_downstream_variant","NA",39,42,0.812,0.933,1040,1222,1347,1862,2387,3084,0.446,0.567,0.0078,81,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364125,"NA","NA","NA","NA","CTCF_binding_site","ENSR00000344630","regular_and_hyper","+","ADAR",2120,0,1.842,"A,R","ALU","downstream",19,32,0.627,51,62,60,0.492,122,28,49,0.636,77,16,14,0.467,30,23,59,0.72,82,34,50,0.595,84,43,70,0.619,113,33,31,0.484,64,0,0,0,0,11,27,0.711,38,71,86,0.548,157,24,29,0.547,53,0,0,0,0,0,0,0,0,0,0,0,0,31,30,0.492,61,12,10,0.455,22,39,126,0.764,165,37,38,0.507,75,21,22,0.512,43,14,16,0.533,30,15,25,0.625,40,27,28,0.509,55,23,19,0.452,42,31,18,0.367,49,61,69,0.531,130,15,11,0.423,26,0,0,0,0,32,29,0.475,61,42,65,0.607,107,15,12,0.444,27,0,0,0,0,21,33,0.611,54,12,11,0.478,23,24,16,0.4,40,4,18,0.818,22,16,44,0.733,60,51,61,0.545,112,39,37,0.487,76,23,18,0.439,41,12,22,0.647,34,0,0,0,0,0,0,0,0,11,16,0.593,27,9,17,0.654,26,0,0,0,0,25,14,0.359,39,14,15,0.517,29,0,0,0,0,6,18,0.75,24,42,44,0.512,86,37,40,0.519,77,53,53,0.5,106,29,23,0.442,52,49,79,0.617,128,49,53,0.52,102,36,55,0.604,91,14,17,0.548,31,0,0,0,0,29,29,0.5,58,52,45,0.464,97,8,14,0.636,22,12,22,0.647,34,5,22,0.815,27,20,42,0.677,62,15,33,0.688,48,12,25,0.676,37,18,41,0.695,59,22,17,0.436,39,12,24,0.667,36,14,8,0.364,22,31,50,0.617,81,48,53,0.525,101,15,21,0.583,36,6,16,0.727,22,68,84,0.553,152,16,22,0.579,38,28,25,0.472,53,6,33,0.846,39,16,28,0.636,44,28,76,0.731,104,12,12,0.5,24,31,89,0.742,120,30,67,0.691,97,62,119,0.657,181,13,28,0.683,41,31,74,0.705,105,9,18,0.667,27,0,0,0,0,21,32,0.604,53,55,54,0.495,109,93,141,0.603,234,69,116,0.627,185,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428746,"A","G","No","TMEM88B","2kb_downstream_variant","NA",39,42,0.812,0.933,944,1216,1472,1934,2416,3150,0.485,0.565,0.0821,81,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364126,"NA","NA","NA","NA","CTCF_binding_site","ENSR00000344630","regular_and_hyper","+","ADAR",2119,0,1.95,"A,R","ALU","downstream",24,30,0.556,54,51,75,0.595,126,24,56,0.7,80,12,18,0.6,30,29,54,0.651,83,28,55,0.663,83,37,76,0.673,113,28,37,0.569,65,0,0,0,0,11,27,0.711,38,76,84,0.525,160,26,26,0.5,52,0,0,0,0,0,0,0,0,0,0,0,0,28,35,0.556,63,9,13,0.591,22,37,127,0.774,164,39,37,0.487,76,17,25,0.595,42,12,19,0.613,31,11,29,0.725,40,29,27,0.482,56,23,20,0.465,43,20,28,0.583,48,52,82,0.612,134,15,11,0.423,26,0,0,0,0,32,31,0.492,63,35,73,0.676,108,11,16,0.593,27,0,0,0,0,16,39,0.709,55,9,14,0.609,23,24,17,0.415,41,3,20,0.87,23,15,45,0.75,60,36,78,0.684,114,34,42,0.553,76,24,18,0.429,42,15,18,0.545,33,0,0,0,0,0,0,0,0,11,16,0.593,27,11,16,0.593,27,0,0,0,0,17,22,0.564,39,13,16,0.552,29,0,0,0,0,8,15,0.652,23,39,47,0.547,86,27,49,0.645,76,47,61,0.565,108,19,33,0.635,52,52,79,0.603,131,44,58,0.569,102,33,60,0.645,93,12,20,0.625,32,0,0,0,0,30,32,0.516,62,52,45,0.464,97,10,12,0.545,22,18,17,0.486,35,7,20,0.741,27,26,39,0.6,65,13,35,0.729,48,16,20,0.556,36,18,42,0.7,60,24,16,0.4,40,16,20,0.556,36,13,8,0.381,21,30,53,0.639,83,45,56,0.554,101,17,19,0.528,36,8,14,0.636,22,66,85,0.563,151,14,24,0.632,38,25,30,0.545,55,7,34,0.829,41,16,31,0.66,47,29,77,0.726,106,12,14,0.538,26,37,86,0.699,123,40,59,0.596,99,64,123,0.658,187,12,30,0.714,42,33,74,0.692,107,11,17,0.607,28,0,0,0,0,23,31,0.574,54,52,61,0.54,113,88,159,0.644,247,63,129,0.672,192,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428751,"A","G","No","TMEM88B","2kb_downstream_variant","NA",38,42,0.792,0.933,1922,2585,545,740,2467,3325,0.169,0.216,0.035,80,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364131,"NA","NA","NA","NA","CTCF_binding_site","ENSR00000344630","regular_and_hyper","+","ADAR",2114,0,1.379,"A,R","ALU","downstream",46,9,0.164,55,101,28,0.217,129,69,20,0.225,89,24,6,0.2,30,67,18,0.212,85,66,20,0.233,86,93,22,0.191,115,55,16,0.225,71,0,0,0,0,31,7,0.184,38,135,30,0.182,165,45,11,0.196,56,0,0,0,0,0,0,0,0,0,0,0,0,45,15,0.25,60,18,6,0.25,24,107,69,0.392,176,62,12,0.162,74,31,12,0.279,43,22,7,0.241,29,33,11,0.25,44,52,8,0.133,60,37,6,0.14,43,43,9,0.173,52,110,26,0.191,136,0,0,0,0,0,0,0,0,54,10,0.156,64,87,25,0.223,112,23,4,0.148,27,0,0,0,0,33,22,0.4,55,18,3,0.143,21,36,6,0.143,42,14,10,0.417,24,42,19,0.311,61,85,30,0.261,115,68,13,0.16,81,39,7,0.152,46,28,8,0.222,36,0,0,0,0,0,0,0,0,24,7,0.226,31,22,6,0.214,28,0,0,0,0,35,4,0.103,39,22,3,0.12,25,0,0,0,0,16,7,0.304,23,73,17,0.189,90,65,16,0.198,81,88,17,0.162,105,49,7,0.125,56,108,31,0.223,139,91,15,0.142,106,83,20,0.194,103,28,6,0.176,34,0,0,0,0,62,7,0.101,69,88,12,0.12,100,12,10,0.455,22,27,8,0.229,35,19,9,0.321,28,54,13,0.194,67,34,15,0.306,49,28,9,0.243,37,39,23,0.371,62,34,11,0.244,45,30,9,0.231,39,16,5,0.238,21,69,17,0.198,86,86,19,0.181,105,29,9,0.237,38,19,4,0.174,23,123,37,0.231,160,30,9,0.231,39,51,8,0.136,59,17,27,0.614,44,41,10,0.196,51,79,38,0.325,117,24,4,0.143,28,97,33,0.254,130,79,22,0.218,101,151,53,0.26,204,34,13,0.277,47,86,29,0.252,115,20,8,0.286,28,0,0,0,0,48,10,0.172,58,106,15,0.124,121,194,64,0.248,258,158,44,0.218,202,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","rs542508182","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428763,"A","G","No","TMEM88B","2kb_downstream_variant","NA",38,42,0.792,0.933,875,1272,1631,2079,2506,3351,0.519,0.588,0.1806,80,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364143,"NA","NA","NA","NA","CTCF_binding_site","ENSR00000344630","regular_and_hyper","+","ADAR",2102,0,1.557,"A","ALU","downstream",25,33,0.569,58,0,132,1,132,32,62,0.66,94,9,17,0.654,26,32,57,0.64,89,44,44,0.5,88,48,63,0.568,111,33,43,0.566,76,0,0,0,0,13,26,0.667,39,84,93,0.525,177,0,54,1,54,0,0,0,0,0,0,0,0,0,0,0,0,23,42,0.646,65,6,17,0.739,23,34,154,0.819,188,37,42,0.532,79,14,29,0.674,43,11,20,0.645,31,15,25,0.625,40,33,31,0.484,64,25,21,0.457,46,24,28,0.538,52,53,77,0.592,130,5,20,0.8,25,0,0,0,0,27,38,0.585,65,49,64,0.566,113,9,17,0.654,26,0,0,0,0,13,40,0.755,53,0,0,0,0,17,23,0.575,40,5,19,0.792,24,15,47,0.758,62,47,69,0.595,116,38,37,0.493,75,0,47,1,47,15,19,0.559,34,0,0,0,0,0,0,0,0,13,23,0.639,36,9,19,0.679,28,0,0,0,0,7,25,0.781,32,11,14,0.56,25,0,0,0,0,7,15,0.682,22,36,57,0.613,93,25,54,0.684,79,54,59,0.522,113,9,50,0.847,59,54,92,0.63,146,51,61,0.545,112,45,60,0.571,105,12,20,0.625,32,0,0,0,0,44,29,0.397,73,48,54,0.529,102,9,11,0.55,20,15,17,0.531,32,6,23,0.793,29,25,42,0.627,67,16,29,0.644,45,11,29,0.725,40,20,43,0.683,63,22,18,0.45,40,14,21,0.6,35,4,17,0.81,21,32,50,0.61,82,41,63,0.606,104,14,23,0.622,37,5,16,0.762,21,54,106,0.662,160,21,20,0.488,41,23,35,0.603,58,7,40,0.851,47,22,31,0.585,53,29,85,0.746,114,9,19,0.679,28,46,84,0.646,130,34,69,0.67,103,75,128,0.631,203,16,34,0.68,50,35,77,0.688,112,10,19,0.655,29,0,0,0,0,29,29,0.5,58,63,62,0.496,125,100,164,0.621,264,80,124,0.608,204,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","rs1695826",0.180023,"NA","NA","NA","NA","NA","NA"]
["chr1",1428789,"A","G","No","TMEM88B","2kb_downstream_variant","NA",25,31,0.521,0.689,1294,2593,270,496,1564,3089,0.088,0.116,0.1709,56,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166494;SRR12166510;SRR12166573;SRR12167000;SRR12167145;SRR12167207;SRR12167307;SRR12167396;SRR12167397;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166834;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167404;SRR12167407;SRR12167468","chr1",1364169,"NA","NA","NA","NA","CTCF_binding_site","ENSR00000344630","regular_and_hyper","+","ADAR",2076,0,1.95,"A,R","ALU","intergenic",50,9,0.153,59,124,15,0.108,139,81,20,0.198,101,20,3,0.13,23,77,13,0.144,90,81,10,0.11,91,97,20,0.171,117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,45,5,0.1,50,0,0,0,0,0,0,0,0,0,0,0,0,51,16,0.239,67,16,4,0.2,20,143,50,0.259,193,0,0,0,0,36,7,0.163,43,24,3,0.111,27,31,7,0.184,38,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22,3,0.12,25,0,0,0,0,0,0,0,0,106,18,0.145,124,27,4,0.129,31,0,0,0,0,44,9,0.17,53,0,0,0,0,0,0,0,0,17,8,0.32,25,57,19,0.25,76,0,0,0,0,0,0,0,0,0,0,0,0,37,6,0.14,43,0,0,0,0,0,0,0,0,33,6,0.154,39,18,7,0.28,25,0,0,0,0,31,4,0.114,35,26,4,0.133,30,0,0,0,0,0,0,0,0,81,11,0.12,92,69,13,0.159,82,101,13,0.114,114,51,7,0.121,58,115,27,0.19,142,98,14,0.125,112,100,14,0.123,114,26,5,0.161,31,0,0,0,0,64,8,0.111,72,95,12,0.112,107,0,0,0,0,32,5,0.135,37,25,4,0.138,29,57,11,0.162,68,34,7,0.171,41,0,0,0,0,48,17,0.262,65,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,94,18,0.161,112,31,4,0.114,35,0,0,0,0,137,23,0.144,160,28,7,0.2,35,0,0,0,0,22,22,0.5,44,55,11,0.167,66,96,32,0.25,128,0,0,0,0,102,25,0.197,127,87,20,0.187,107,185,30,0.14,215,51,13,0.203,64,106,21,0.165,127,26,5,0.161,31,0,0,0,0,0,0,0,0,133,15,0.101,148,263,42,0.138,305,181,40,0.181,221,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428813,"A","G","No","TMEM88B","2kb_downstream_variant","NA",40,42,0.833,0.933,1939,2459,981,1411,2920,3870,0.275,0.333,0.0394,82,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364193,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",2052,0,1.449,"A,R","ALU","intergenic",41,24,0.369,65,116,50,0.301,166,72,44,0.379,116,20,13,0.394,33,49,41,0.456,90,74,24,0.245,98,71,50,0.413,121,52,36,0.409,88,0,0,0,0,28,10,0.263,38,136,61,0.31,197,38,18,0.321,56,0,0,0,0,0,0,0,0,15,5,0.25,20,48,26,0.351,74,15,6,0.286,21,117,80,0.406,197,50,34,0.405,84,37,13,0.26,50,16,11,0.407,27,31,11,0.262,42,66,22,0.25,88,37,13,0.26,50,39,18,0.316,57,98,55,0.359,153,23,9,0.281,32,0,0,0,0,58,27,0.318,85,89,44,0.331,133,27,9,0.25,36,0,0,0,0,37,19,0.339,56,0,0,0,0,34,13,0.277,47,13,15,0.536,28,60,26,0.302,86,99,48,0.327,147,49,15,0.234,64,39,17,0.304,56,24,17,0.415,41,11,9,0.45,20,0,0,0,0,33,15,0.312,48,23,8,0.258,31,0,0,0,0,32,17,0.347,49,22,8,0.267,30,0,0,0,0,17,11,0.393,28,59,33,0.359,92,51,46,0.474,97,73,49,0.402,122,46,26,0.361,72,102,69,0.404,171,73,56,0.434,129,79,45,0.363,124,25,11,0.306,36,15,13,0.464,28,60,21,0.259,81,85,30,0.261,115,14,6,0.3,20,28,13,0.317,41,19,12,0.387,31,43,22,0.338,65,25,18,0.419,43,27,20,0.426,47,43,29,0.403,72,32,11,0.256,43,23,6,0.207,29,0,0,0,0,68,39,0.364,107,77,51,0.398,128,32,5,0.135,37,14,9,0.391,23,125,50,0.286,175,19,16,0.457,35,32,23,0.418,55,22,30,0.577,52,48,19,0.284,67,89,64,0.418,153,22,5,0.185,27,81,56,0.409,137,68,47,0.409,115,145,71,0.329,216,42,33,0.44,75,87,54,0.383,141,29,10,0.256,39,0,0,0,0,47,15,0.242,62,117,45,0.278,162,223,117,0.344,340,133,105,0.441,238,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428822,"A","G","No","TMEM88B","2kb_downstream_variant","NA",26,32,0.542,0.711,1969,2977,285,451,2254,3428,0.071,0.097,0.0718,58,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166510;SRR12166573;SRR12166759;SRR12166775;SRR12166823;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166554;SRR12166736;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166924;SRR12166971;SRR12166978;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364202,"NA","NA","NA","NA","NA","NA","regular","+","ADAR",2043,0,1.842,"A,R","ALU","intergenic",63,7,0.1,70,149,18,0.108,167,114,13,0.102,127,36,4,0.1,40,81,10,0.11,91,83,11,0.117,94,112,14,0.111,126,0,0,0,0,0,0,0,0,0,0,0,0,171,19,0.1,190,49,12,0.197,61,0,0,0,0,0,0,0,0,0,0,0,0,60,15,0.2,75,0,0,0,0,178,29,0.14,207,74,10,0.119,84,0,0,0,0,27,3,0.1,30,43,6,0.122,49,0,0,0,0,42,13,0.236,55,54,7,0.115,61,142,17,0.107,159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,50,6,0.107,56,0,0,0,0,0,0,0,0,23,4,0.148,27,78,16,0.17,94,133,20,0.131,153,62,8,0.114,70,0,0,0,0,38,7,0.156,45,0,0,0,0,0,0,0,0,37,5,0.119,42,26,4,0.133,30,0,0,0,0,44,7,0.137,51,0,0,0,0,0,0,0,0,23,5,0.179,28,80,11,0.121,91,77,17,0.181,94,104,20,0.161,124,62,7,0.101,69,162,22,0.12,184,117,14,0.107,131,100,17,0.145,117,0,0,0,0,30,4,0.118,34,0,0,0,0,0,0,0,0,20,3,0.13,23,0,0,0,0,26,5,0.161,31,58,10,0.147,68,36,6,0.143,42,41,8,0.163,49,63,10,0.137,73,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,107,20,0.157,127,0,0,0,0,19,3,0.136,22,165,25,0.132,190,0,0,0,0,50,7,0.123,57,38,10,0.208,48,62,7,0.101,69,135,24,0.151,159,25,3,0.107,28,123,22,0.152,145,110,16,0.127,126,207,24,0.104,231,66,10,0.132,76,122,23,0.159,145,0,0,0,0,0,0,0,0,60,7,0.104,67,156,19,0.109,175,316,45,0.125,361,217,27,0.111,244,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428834,"A","G","No","TMEM88B","2kb_downstream_variant","NA",32,33,0.667,0.733,2228,3011,466,668,2694,3679,0.118,0.137,0.3318,65,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167727;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166747;SRR12166783;SRR12166832;SRR12166834;SRR12166904;SRR12166912;SRR12166924;SRR12166978;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167280;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364214,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",2031,0,1.557,"A,R","ALU","intergenic",64,13,0.169,77,150,20,0.118,170,112,18,0.138,130,37,7,0.159,44,0,0,0,0,85,13,0.133,98,112,20,0.152,132,75,18,0.194,93,0,0,0,0,33,11,0.25,44,162,27,0.143,189,55,10,0.154,65,0,0,0,0,0,0,0,0,0,0,0,0,59,16,0.213,75,17,3,0.15,20,148,53,0.264,201,76,14,0.156,90,39,6,0.133,45,29,5,0.147,34,36,12,0.25,48,76,18,0.191,94,44,10,0.185,54,0,0,0,0,137,25,0.154,162,32,5,0.135,37,0,0,0,0,71,15,0.174,86,117,27,0.188,144,35,4,0.103,39,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21,5,0.192,26,75,21,0.219,96,137,22,0.138,159,67,10,0.13,77,0,0,0,0,36,11,0.234,47,0,0,0,0,0,0,0,0,0,0,0,0,24,7,0.226,31,0,0,0,0,43,10,0.189,53,24,10,0.294,34,0,0,0,0,22,7,0.241,29,77,23,0.23,100,84,20,0.192,104,97,29,0.23,126,0,0,0,0,154,33,0.176,187,113,23,0.169,136,107,30,0.219,137,35,9,0.205,44,30,5,0.143,35,67,14,0.173,81,107,13,0.108,120,17,6,0.261,23,0,0,0,0,25,6,0.194,31,0,0,0,0,42,11,0.208,53,37,8,0.178,45,54,17,0.239,71,0,0,0,0,24,7,0.226,31,0,0,0,0,84,11,0.116,95,110,18,0.141,128,0,0,0,0,0,0,0,0,173,32,0.156,205,0,0,0,0,54,11,0.169,65,33,14,0.298,47,53,14,0.209,67,128,33,0.205,161,26,3,0.103,29,118,29,0.197,147,109,17,0.135,126,194,48,0.198,242,0,0,0,0,115,29,0.201,144,0,0,0,0,0,0,0,0,60,8,0.118,68,150,36,0.194,186,299,69,0.188,368,213,35,0.141,248,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428837,"A","G","No","TMEM88B","2kb_downstream_variant","NA",27,37,0.562,0.822,1795,3213,316,558,2111,3771,0.085,0.124,0.0144,64,"SRR12166096;SRR12166108;SRR12166184;SRR12166187;SRR12166190;SRR12166221;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166823;SRR12167000;SRR12167145;SRR12167207;SRR12167307;SRR12167396;SRR12167397;SRR12167511;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364217,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",2028,0,1.149,"A,R","ALU","intergenic",0,0,0,0,152,21,0.121,173,112,16,0.125,128,0,0,0,0,86,16,0.157,102,0,0,0,0,121,14,0.104,135,86,10,0.104,96,0,0,0,0,39,5,0.114,44,0,0,0,0,56,9,0.138,65,0,0,0,0,0,0,0,0,0,0,0,0,61,12,0.164,73,18,2,0.1,20,163,38,0.189,201,80,12,0.13,92,44,8,0.154,52,29,4,0.121,33,40,9,0.184,49,0,0,0,0,0,0,0,0,0,0,0,0,145,19,0.116,164,30,6,0.167,36,0,0,0,0,0,0,0,0,121,26,0.177,147,33,5,0.132,38,0,0,0,0,45,12,0.211,57,0,0,0,0,0,0,0,0,21,5,0.192,26,69,25,0.266,94,0,0,0,0,68,11,0.139,79,0,0,0,0,43,5,0.104,48,0,0,0,0,0,0,0,0,32,7,0.179,39,23,8,0.258,31,0,0,0,0,47,7,0.13,54,31,4,0.114,35,0,0,0,0,24,4,0.143,28,84,15,0.152,99,91,14,0.133,105,108,14,0.115,122,58,17,0.227,75,161,28,0.148,189,122,16,0.116,138,123,19,0.134,142,41,5,0.109,46,29,5,0.147,34,0,0,0,0,0,0,0,0,18,4,0.182,22,39,6,0.133,45,27,4,0.129,31,56,9,0.138,65,42,8,0.16,50,39,6,0.133,45,61,12,0.164,73,41,5,0.109,46,26,5,0.161,31,0,0,0,0,0,0,0,0,109,19,0.148,128,36,7,0.163,43,16,4,0.2,20,181,26,0.126,207,0,0,0,0,57,8,0.123,65,37,12,0.245,49,61,8,0.116,69,127,36,0.221,163,25,4,0.138,29,125,21,0.144,146,100,25,0.2,125,207,35,0.145,242,63,12,0.16,75,123,20,0.14,143,0,0,0,0,0,0,0,0,56,10,0.152,66,166,24,0.126,190,325,48,0.129,373,209,43,0.171,252,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428838,"A","G","No","TMEM88B","2kb_downstream_variant","NA",33,37,0.688,0.822,2199,3186,441,729,2640,3915,0.121,0.157,0.0544,70,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167727;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166912;SRR12166924;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364218,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",2027,0,1.149,"A,R","ALU","intergenic",64,13,0.169,77,150,24,0.138,174,109,19,0.148,128,38,6,0.136,44,92,11,0.107,103,84,14,0.143,98,106,28,0.209,134,84,12,0.125,96,0,0,0,0,0,0,0,0,0,0,0,0,53,12,0.185,65,0,0,0,0,0,0,0,0,0,0,0,0,55,18,0.247,73,17,3,0.15,20,156,46,0.228,202,0,0,0,0,44,8,0.154,52,24,9,0.273,33,40,9,0.184,49,85,10,0.105,95,42,12,0.222,54,57,12,0.174,69,144,18,0.111,162,30,6,0.167,36,0,0,0,0,71,15,0.174,86,123,25,0.169,148,0,0,0,0,0,0,0,0,45,12,0.211,57,0,0,0,0,0,0,0,0,19,7,0.269,26,71,23,0.245,94,143,17,0.106,160,69,10,0.127,79,0,0,0,0,41,7,0.146,48,0,0,0,0,16,5,0.238,21,30,9,0.231,39,27,4,0.129,31,0,0,0,0,43,10,0.189,53,27,7,0.206,34,0,0,0,0,24,4,0.143,28,83,16,0.162,99,85,18,0.175,103,96,25,0.207,121,64,11,0.147,75,156,33,0.175,189,114,23,0.168,137,114,28,0.197,142,36,11,0.234,47,0,0,0,0,0,0,0,0,92,26,0.22,118,18,4,0.182,22,37,7,0.159,44,21,10,0.323,31,50,15,0.231,65,42,8,0.16,50,33,13,0.283,46,62,11,0.151,73,0,0,0,0,0,0,0,0,0,0,0,0,72,20,0.217,92,99,30,0.233,129,0,0,0,0,16,4,0.2,20,176,30,0.146,206,37,5,0.119,42,57,8,0.123,65,31,17,0.354,48,56,13,0.188,69,127,36,0.221,163,22,7,0.241,29,122,24,0.164,146,99,25,0.202,124,196,46,0.19,242,63,13,0.171,76,119,26,0.179,145,40,5,0.111,45,0,0,0,0,55,12,0.179,67,160,30,0.158,190,309,66,0.176,375,203,49,0.194,252,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428839,"A","G","No","TMEM88B","2kb_downstream_variant","NA",32,38,0.667,0.844,2059,3113,406,668,2465,3781,0.115,0.147,0.0692,70,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166510;SRR12166573;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167685;SRR12167727;SRR12167862;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167407;SRR12167468","chr1",1364219,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",2026,0,0.592,"A,R","ALU","intergenic",64,13,0.169,77,153,22,0.126,175,112,16,0.125,128,39,5,0.114,44,87,16,0.155,103,82,15,0.155,97,115,18,0.135,133,81,14,0.147,95,0,0,0,0,32,12,0.273,44,0,0,0,0,57,8,0.123,65,0,0,0,0,0,0,0,0,0,0,0,0,54,19,0.26,73,15,6,0.286,21,151,50,0.249,201,73,19,0.207,92,0,0,0,0,27,6,0.182,33,40,9,0.184,49,0,0,0,0,39,15,0.278,54,62,9,0.127,71,142,17,0.107,159,30,6,0.167,36,0,0,0,0,74,10,0.119,84,0,0,0,0,0,0,0,0,0,0,0,0,49,8,0.14,57,0,0,0,0,45,6,0.118,51,20,5,0.2,25,66,27,0.29,93,145,17,0.105,162,0,0,0,0,49,6,0.109,55,39,9,0.188,48,0,0,0,0,18,3,0.143,21,0,0,0,0,25,6,0.194,31,0,0,0,0,47,7,0.13,54,27,7,0.206,34,0,0,0,0,24,4,0.143,28,80,18,0.184,98,83,20,0.194,103,97,27,0.218,124,62,13,0.173,75,160,28,0.149,188,119,18,0.131,137,124,18,0.127,142,38,9,0.191,47,30,4,0.118,34,66,12,0.154,78,104,15,0.126,119,17,5,0.227,22,36,8,0.182,44,27,4,0.129,31,54,10,0.156,64,39,12,0.235,51,40,6,0.13,46,62,11,0.151,73,0,0,0,0,27,4,0.129,31,0,0,0,0,77,14,0.154,91,107,22,0.171,129,37,6,0.14,43,14,6,0.3,20,163,43,0.209,206,0,0,0,0,58,7,0.108,65,35,13,0.271,48,60,9,0.13,69,130,30,0.188,160,24,5,0.172,29,121,26,0.177,147,97,26,0.211,123,192,48,0.2,240,60,15,0.2,75,115,29,0.201,144,37,8,0.178,45,0,0,0,0,0,0,0,0,0,0,0,0,299,67,0.183,366,198,48,0.195,246,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428840,"A","G","No","TMEM88B","2kb_downstream_variant","NA",39,42,0.812,0.933,2185,2834,892,1287,3077,4121,0.244,0.289,0.0799,81,"SRR12165859;SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364220,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",2025,1,0.592,"A,R","ALU","intergenic",52,25,0.325,77,132,44,0.25,176,96,32,0.25,128,0,0,0,0,76,26,0.255,102,69,28,0.289,97,88,45,0.338,133,75,20,0.211,95,0,0,0,0,32,12,0.273,44,148,41,0.217,189,45,20,0.308,65,0,0,0,0,0,0,0,0,0,0,0,0,42,31,0.425,73,11,10,0.476,21,107,93,0.465,200,65,27,0.293,92,41,11,0.212,52,18,15,0.455,33,31,18,0.367,49,75,20,0.211,95,36,18,0.333,54,57,14,0.197,71,122,37,0.233,159,21,15,0.417,36,0,0,0,0,65,19,0.226,84,116,32,0.216,148,31,5,0.139,36,0,0,0,0,41,16,0.281,57,0,0,0,0,39,12,0.235,51,18,7,0.28,25,55,38,0.409,93,118,44,0.272,162,56,22,0.282,78,42,12,0.222,54,33,15,0.312,48,0,0,0,0,16,5,0.238,21,26,13,0.333,39,17,14,0.452,31,13,8,0.381,21,36,18,0.333,54,24,10,0.294,34,0,0,0,0,22,6,0.214,28,63,35,0.357,98,66,37,0.359,103,84,40,0.323,124,57,18,0.24,75,130,58,0.309,188,102,35,0.255,137,94,49,0.343,143,34,13,0.277,47,23,11,0.324,34,57,21,0.269,78,99,21,0.175,120,15,7,0.318,22,32,12,0.273,44,19,12,0.387,31,39,24,0.381,63,38,13,0.255,51,33,13,0.283,46,54,19,0.26,73,34,12,0.261,46,22,9,0.29,31,0,0,0,0,64,27,0.297,91,86,43,0.333,129,25,17,0.405,42,12,8,0.4,20,141,65,0.316,206,31,11,0.262,42,43,22,0.338,65,25,23,0.479,48,49,21,0.3,70,101,59,0.369,160,21,8,0.276,29,86,61,0.415,147,75,47,0.385,122,165,75,0.312,240,57,18,0.24,75,92,52,0.361,144,34,11,0.244,45,0,0,0,0,51,14,0.215,65,140,49,0.259,189,257,108,0.296,365,162,83,0.339,245,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428841,"A","G","No","TMEM88B","2kb_downstream_variant","NA",31,34,0.646,0.756,2126,3125,420,625,2546,3750,0.107,0.134,0.1573,65,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166187;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166823;SRR12167000;SRR12167145;SRR12167307;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166747;SRR12166748;SRR12166783;SRR12166869;SRR12166924;SRR12166967;SRR12166978;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364221,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",2024,1,0.592,"A,R","ALU","intergenic",62,15,0.195,77,141,34,0.194,175,114,13,0.102,127,38,6,0.136,44,0,0,0,0,0,0,0,0,109,25,0.187,134,0,0,0,0,0,0,0,0,41,5,0.109,46,166,24,0.126,190,53,13,0.197,66,0,0,0,0,0,0,0,0,0,0,0,0,59,14,0.192,73,17,4,0.19,21,151,49,0.245,200,78,14,0.152,92,44,8,0.154,52,23,11,0.324,34,45,7,0.135,52,80,14,0.149,94,46,8,0.148,54,0,0,0,0,144,17,0.106,161,31,4,0.114,35,0,0,0,0,0,0,0,0,122,25,0.17,147,0,0,0,0,0,0,0,0,50,6,0.107,56,0,0,0,0,0,0,0,0,0,0,0,0,72,21,0.226,93,135,27,0.167,162,69,10,0.127,79,47,7,0.13,54,35,13,0.271,48,0,0,0,0,0,0,0,0,35,4,0.103,39,26,6,0.188,32,16,5,0.238,21,47,7,0.13,54,30,4,0.118,34,0,0,0,0,0,0,0,0,87,11,0.112,98,87,16,0.155,103,109,18,0.142,127,65,10,0.133,75,162,28,0.147,190,115,20,0.148,135,119,27,0.185,146,37,10,0.213,47,28,6,0.176,34,65,13,0.167,78,104,17,0.14,121,19,3,0.136,22,0,0,0,0,25,6,0.194,31,54,10,0.156,64,41,10,0.196,51,0,0,0,0,0,0,0,0,40,6,0.13,46,0,0,0,0,0,0,0,0,0,0,0,0,104,25,0.194,129,29,13,0.31,42,0,0,0,0,180,29,0.139,209,0,0,0,0,53,13,0.197,66,35,13,0.271,48,58,12,0.171,70,123,36,0.226,159,17,11,0.393,28,124,23,0.156,147,108,14,0.115,122,201,38,0.159,239,61,15,0.197,76,113,30,0.21,143,40,5,0.111,45,0,0,0,0,53,12,0.185,65,162,26,0.138,188,301,63,0.173,364,206,36,0.149,242,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428853,"A","G","No","TMEM88B","2kb_downstream_variant","NA",31,39,0.646,0.867,2237,3170,467,586,2704,3756,0.111,0.149,0.0486,70,"SRR12165859;SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167145;SRR12167307;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167872;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167407;SRR12167468","chr1",1364233,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",2012,0,1.842,"A,R,D","ALU","intergenic",69,9,0.115,78,129,28,0.178,157,94,27,0.223,121,0,0,0,0,73,32,0.305,105,87,11,0.112,98,120,16,0.118,136,84,11,0.116,95,0,0,0,0,0,0,0,0,156,35,0.183,191,56,8,0.125,64,0,0,0,0,0,0,0,0,0,0,0,0,56,14,0.2,70,16,7,0.304,23,152,49,0.244,201,86,14,0.14,100,47,7,0.13,54,30,8,0.211,38,41,9,0.18,50,82,14,0.146,96,45,10,0.182,55,62,12,0.162,74,130,30,0.188,160,30,4,0.118,34,0,0,0,0,0,0,0,0,103,20,0.163,123,0,0,0,0,0,0,0,0,44,10,0.185,54,0,0,0,0,45,5,0.1,50,0,0,0,0,66,20,0.233,86,139,20,0.126,159,67,10,0.13,77,43,9,0.173,52,34,10,0.227,44,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,4,0.19,21,0,0,0,0,34,4,0.105,38,0,0,0,0,23,7,0.233,30,88,11,0.111,99,86,19,0.181,105,121,18,0.129,139,65,11,0.145,76,169,22,0.115,191,120,16,0.118,136,126,21,0.143,147,38,8,0.174,46,30,4,0.118,34,71,9,0.113,80,110,22,0.167,132,13,8,0.381,21,35,7,0.167,42,23,8,0.258,31,53,10,0.159,63,41,12,0.226,53,0,0,0,0,71,12,0.145,83,39,5,0.114,44,26,3,0.103,29,0,0,0,0,82,11,0.118,93,109,22,0.168,131,32,5,0.135,37,14,7,0.333,21,167,35,0.173,202,38,7,0.156,45,59,9,0.132,68,29,21,0.42,50,59,9,0.132,68,123,34,0.217,157,24,4,0.143,28,106,29,0.215,135,90,14,0.135,104,186,34,0.155,220,57,14,0.197,71,114,18,0.136,132,38,7,0.156,45,0,0,0,0,0,0,0,0,0,0,0,0,301,40,0.117,341,194,33,0.145,227,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","rs909377111","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428879,"A","G","No","TMEM88B","2kb_downstream_variant","NA",39,38,0.812,0.844,2128,2848,668,927,2796,3775,0.194,0.21,0.5169,77,"SRR12165859;SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364259,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1986,0,1.557,"A,R","ALU","intergenic",48,16,0.25,64,89,57,0.39,146,94,28,0.23,122,0,0,0,0,68,20,0.227,88,59,14,0.192,73,87,28,0.243,115,78,15,0.161,93,0,0,0,0,26,8,0.235,34,124,29,0.19,153,30,24,0.444,54,0,0,0,0,0,0,0,0,15,5,0.25,20,46,12,0.207,58,13,7,0.35,20,135,61,0.311,196,69,18,0.207,87,49,12,0.197,61,21,9,0.3,30,33,11,0.25,44,67,16,0.193,83,39,13,0.25,52,56,11,0.164,67,129,26,0.168,155,19,10,0.345,29,0,0,0,0,64,11,0.147,75,116,25,0.177,141,29,4,0.121,33,0,0,0,0,34,21,0.382,55,15,5,0.25,20,42,7,0.143,49,16,6,0.273,22,56,29,0.341,85,112,42,0.273,154,67,9,0.118,76,30,19,0.388,49,33,12,0.267,45,0,0,0,0,0,0,0,0,25,3,0.107,28,30,4,0.118,34,0,0,0,0,39,14,0.264,53,26,7,0.212,33,0,0,0,0,21,7,0.25,28,69,16,0.188,85,81,29,0.264,110,103,30,0.226,133,54,24,0.308,78,135,48,0.262,183,79,39,0.331,118,111,32,0.224,143,37,7,0.159,44,0,0,0,0,67,13,0.163,80,83,33,0.284,116,0,0,0,0,27,10,0.27,37,16,6,0.273,22,46,11,0.193,57,36,13,0.265,49,26,19,0.422,45,60,22,0.268,82,30,10,0.25,40,0,0,0,0,0,0,0,0,62,20,0.244,82,91,24,0.209,115,30,6,0.167,36,0,0,0,0,139,45,0.245,184,34,7,0.171,41,46,18,0.281,64,21,19,0.475,40,53,8,0.131,61,108,56,0.341,164,19,7,0.269,26,91,41,0.311,132,80,23,0.223,103,155,53,0.255,208,56,15,0.211,71,106,26,0.197,132,36,13,0.265,49,0,0,0,0,55,14,0.203,69,127,36,0.221,163,272,74,0.214,346,186,53,0.222,239,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428889,"A","G","No","TMEM88B","2kb_downstream_variant","NA",38,39,0.792,0.867,2214,2897,585,863,2799,3760,0.168,0.199,0.1552,77,"SRR12165859;SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166832;SRR12166834;SRR12166869;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364269,"NA","NA","NA","NA","NA","NA","regular","+","ADAR",1976,0,1.842,"A,R,D","ALU","intergenic",50,17,0.254,67,117,28,0.193,145,90,26,0.224,116,0,0,0,0,71,15,0.174,86,67,9,0.118,76,99,24,0.195,123,84,16,0.16,100,0,0,0,0,24,10,0.294,34,139,17,0.109,156,39,13,0.25,52,0,0,0,0,0,0,0,0,0,0,0,0,46,13,0.22,59,16,5,0.238,21,124,84,0.404,208,71,19,0.211,90,51,11,0.177,62,22,10,0.312,32,33,11,0.25,44,72,13,0.153,85,43,9,0.173,52,58,9,0.134,67,135,24,0.151,159,24,7,0.226,31,0,0,0,0,58,11,0.159,69,113,28,0.199,141,0,0,0,0,0,0,0,0,42,13,0.236,55,17,3,0.15,20,43,7,0.14,50,14,8,0.364,22,58,25,0.301,83,120,32,0.211,152,68,10,0.128,78,41,8,0.163,49,29,14,0.326,43,0,0,0,0,15,5,0.25,20,21,4,0.16,25,27,11,0.289,38,0,0,0,0,46,11,0.193,57,27,5,0.156,32,0,0,0,0,26,5,0.161,31,66,19,0.224,85,93,22,0.191,115,98,37,0.274,135,68,15,0.181,83,149,36,0.195,185,94,25,0.21,119,117,34,0.225,151,37,5,0.119,42,27,5,0.156,32,63,15,0.192,78,95,21,0.181,116,15,5,0.25,20,22,12,0.353,34,16,7,0.304,23,47,13,0.217,60,0,0,0,0,33,11,0.25,44,69,15,0.179,84,33,4,0.108,37,0,0,0,0,0,0,0,0,73,14,0.161,87,87,31,0.263,118,24,10,0.294,34,0,0,0,0,149,40,0.212,189,35,7,0.167,42,45,19,0.297,64,24,19,0.442,43,44,15,0.254,59,113,46,0.289,159,21,5,0.192,26,95,32,0.252,127,63,35,0.357,98,152,55,0.266,207,45,24,0.348,69,101,30,0.229,131,38,9,0.191,47,0,0,0,0,60,9,0.13,69,129,24,0.157,153,255,77,0.232,332,176,56,0.241,232,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428906,"A","G","No","TMEM88B","2kb_downstream_variant","NA",20,25,0.417,0.556,1285,1912,211,285,1496,2197,0.058,0.072,0.3377,45,"SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166290;SRR12166405;SRR12166435;SRR12166459;SRR12166510;SRR12166573;SRR12166775;SRR12166823;SRR12167315;SRR12167397;SRR12167727;SRR12167867;SRR12167869;SRR12167879;SRR12165815;SRR12166237;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166736;SRR12166748;SRR12166832;SRR12166834;SRR12166912;SRR12166924;SRR12166971;SRR12166978;SRR12167012;SRR12167015;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395","chr1",1364286,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1959,0,1.379,"A,R","ALU","intergenic",0,0,0,0,114,13,0.102,127,93,11,0.106,104,0,0,0,0,78,10,0.114,88,61,10,0.141,71,107,23,0.177,130,87,13,0.13,100,0,0,0,0,0,0,0,0,0,0,0,0,45,7,0.135,52,0,0,0,0,0,0,0,0,25,4,0.138,29,46,11,0.193,57,0,0,0,0,188,35,0.157,223,0,0,0,0,0,0,0,0,25,6,0.194,31,45,6,0.118,51,0,0,0,0,0,0,0,0,60,7,0.104,67,123,21,0.146,144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,3,0.15,20,0,0,0,0,0,0,0,0,60,16,0.211,76,0,0,0,0,0,0,0,0,0,0,0,0,33,4,0.108,37,0,0,0,0,0,0,0,0,18,2,0.1,20,30,4,0.118,34,0,0,0,0,0,0,0,0,30,5,0.143,35,0,0,0,0,24,3,0.111,27,0,0,0,0,96,12,0.111,108,0,0,0,0,74,10,0.119,84,160,18,0.101,178,88,16,0.154,104,125,23,0.155,148,32,4,0.111,36,0,0,0,0,0,0,0,0,0,0,0,0,18,2,0.1,20,0,0,0,0,0,0,0,0,56,7,0.111,63,0,0,0,0,31,6,0.162,37,76,12,0.136,88,0,0,0,0,0,0,0,0,0,0,0,0,74,9,0.108,83,99,17,0.147,116,0,0,0,0,19,3,0.136,22,154,27,0.149,181,0,0,0,0,57,9,0.136,66,30,8,0.211,38,0,0,0,0,114,19,0.143,133,0,0,0,0,109,14,0.114,123,77,12,0.135,89,162,21,0.115,183,51,6,0.105,57,97,15,0.134,112,36,5,0.122,41,0,0,0,0,53,7,0.117,60,0,0,0,0,0,0,0,0,0,0,0,0,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1428950,"A","G","No","TMEM88B","2kb_downstream_variant","NA",35,39,0.729,0.867,1289,1630,1060,1408,2349,3038,0.313,0.398,0.0403,74,"SRR12165859;SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167315;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364330,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1915,0,1.842,"A,R,D","ALU","intergenic",29,8,0.216,37,44,28,0.389,72,40,24,0.375,64,0,0,0,0,33,36,0.522,69,39,25,0.391,64,61,65,0.516,126,60,33,0.355,93,0,0,0,0,18,18,0.5,36,91,52,0.364,143,21,18,0.462,39,0,0,0,0,0,0,0,0,16,10,0.385,26,29,38,0.567,67,0,0,0,0,95,136,0.589,231,44,39,0.47,83,37,32,0.464,69,0,0,0,0,27,21,0.438,48,47,27,0.365,74,29,13,0.31,42,33,23,0.411,56,76,59,0.437,135,19,10,0.345,29,0,0,0,0,28,21,0.429,49,78,85,0.521,163,0,0,0,0,0,0,0,0,26,18,0.409,44,13,12,0.48,25,23,9,0.281,32,0,0,0,0,20,27,0.574,47,54,58,0.518,112,36,31,0.463,67,31,7,0.184,38,16,19,0.543,35,0,0,0,0,0,0,0,0,12,13,0.52,25,15,20,0.571,35,0,0,0,0,28,14,0.333,42,21,11,0.344,32,0,0,0,0,10,15,0.6,25,50,32,0.39,82,64,34,0.347,98,41,50,0.549,91,60,19,0.241,79,100,60,0.375,160,60,42,0.412,102,63,56,0.471,119,16,13,0.448,29,13,8,0.381,21,24,29,0.547,53,56,41,0.423,97,0,0,0,0,0,0,0,0,14,11,0.44,25,25,39,0.609,64,21,15,0.417,36,19,7,0.269,26,50,32,0.39,82,30,15,0.333,45,15,10,0.4,25,0,0,0,0,45,30,0.4,75,67,54,0.446,121,15,16,0.516,31,0,0,0,0,94,81,0.463,175,19,15,0.441,34,25,17,0.405,42,12,14,0.538,26,13,15,0.536,28,37,58,0.611,95,12,9,0.429,21,37,47,0.56,84,28,51,0.646,79,96,77,0.445,173,19,33,0.635,52,47,53,0.53,100,19,14,0.424,33,0,0,0,0,23,19,0.452,42,67,47,0.412,114,127,148,0.538,275,97,82,0.458,179,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","rs1003316209","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429005,"A","G","No","TMEM88B","2kb_downstream_variant","NA",20,33,0.417,0.733,1283,2320,269,471,1552,2791,0.075,0.126,0.0089,53,"SRR12166187;SRR12166190;SRR12166221;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167141;SRR12167145;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167727;SRR12167869;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167012;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364385,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1860,1,0,"A,R","ALU","intergenic",0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,115,32,0.218,147,81,11,0.12,92,0,0,0,0,21,7,0.25,28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47,13,0.217,60,0,0,0,0,182,44,0.195,226,56,15,0.211,71,51,6,0.105,57,0,0,0,0,32,11,0.256,43,57,7,0.109,64,35,6,0.146,41,55,7,0.113,62,105,20,0.16,125,0,0,0,0,0,0,0,0,48,6,0.111,54,144,24,0.143,168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28,5,0.152,33,0,0,0,0,34,19,0.358,53,83,13,0.135,96,57,8,0.123,65,0,0,0,0,31,8,0.205,39,0,0,0,0,0,0,0,0,0,0,0,0,21,7,0.25,28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19,3,0.136,22,63,10,0.137,73,86,18,0.173,104,74,10,0.119,84,53,7,0.117,60,130,26,0.167,156,117,19,0.14,136,90,22,0.196,112,36,8,0.182,44,0,0,0,0,38,14,0.269,52,0,0,0,0,0,0,0,0,0,0,0,0,18,7,0.28,25,57,11,0.162,68,24,7,0.226,31,24,6,0.2,30,63,10,0.137,73,29,5,0.147,34,18,3,0.143,21,0,0,0,0,59,8,0.119,67,94,24,0.203,118,30,5,0.143,35,0,0,0,0,167,29,0.148,196,0,0,0,0,30,5,0.143,35,0,0,0,0,0,0,0,0,55,11,0.167,66,0,0,0,0,70,10,0.125,80,74,13,0.149,87,148,28,0.159,176,37,11,0.229,48,83,16,0.162,99,27,6,0.182,33,0,0,0,0,32,8,0.2,40,99,30,0.233,129,241,50,0.172,291,135,31,0.187,166,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429006,"A","G","No","TMEM88B","2kb_downstream_variant","NA",32,35,0.667,0.778,1790,2243,439,600,2229,2843,0.137,0.155,0.413,67,"SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167315;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167869;SRR12167875;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167012;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364386,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1859,1,0,"A,R","ALU","intergenic",0,0,0,0,61,18,0.228,79,49,6,0.109,55,20,3,0.13,23,56,10,0.152,66,62,12,0.162,74,114,32,0.219,146,72,20,0.217,92,0,0,0,0,19,8,0.296,27,140,30,0.176,170,25,8,0.242,33,0,0,0,0,0,0,0,0,0,0,0,0,52,10,0.161,62,0,0,0,0,170,55,0.244,225,54,17,0.239,71,45,13,0.224,58,0,0,0,0,35,8,0.186,43,56,8,0.125,64,30,11,0.268,41,54,8,0.129,62,110,15,0.12,125,18,10,0.357,28,0,0,0,0,45,10,0.182,55,139,29,0.173,168,0,0,0,0,0,0,0,0,26,8,0.235,34,17,5,0.227,22,24,9,0.273,33,0,0,0,0,47,6,0.113,53,80,18,0.184,98,56,9,0.138,65,43,18,0.295,61,29,10,0.256,39,0,0,0,0,0,0,0,0,0,0,0,0,22,6,0.214,28,0,0,0,0,20,9,0.31,29,0,0,0,0,0,0,0,0,19,3,0.136,22,63,11,0.149,74,82,22,0.212,104,76,9,0.106,85,50,10,0.167,60,123,30,0.196,153,114,22,0.162,136,91,21,0.188,112,37,7,0.159,44,22,4,0.154,26,41,11,0.212,52,0,0,0,0,0,0,0,0,0,0,0,0,21,5,0.192,26,54,14,0.206,68,23,8,0.258,31,24,6,0.2,30,62,10,0.139,72,28,6,0.176,34,17,4,0.19,21,0,0,0,0,54,14,0.206,68,91,27,0.229,118,27,8,0.229,35,0,0,0,0,156,40,0.204,196,0,0,0,0,30,5,0.143,35,0,0,0,0,19,5,0.208,24,49,17,0.258,66,0,0,0,0,60,20,0.25,80,66,21,0.241,87,123,53,0.301,176,41,7,0.146,48,76,23,0.232,99,26,7,0.212,33,0,0,0,0,33,7,0.175,40,98,32,0.246,130,216,75,0.258,291,131,36,0.216,167,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429007,"A","G","No","TMEM88B","2kb_downstream_variant","NA",32,35,0.667,0.778,1713,2150,479,673,2192,2823,0.145,0.189,0.0787,67,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166573;SRR12166753;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167315;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166747;SRR12166748;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364387,"NA","NA","NA","NA","NA","NA","hyper","+","ADAR",1858,1,0,"A,R","ALU","intergenic",27,3,0.1,30,63,16,0.203,79,48,7,0.127,55,18,5,0.217,23,46,19,0.292,65,57,16,0.219,73,110,31,0.22,141,74,18,0.196,92,0,0,0,0,0,0,0,0,137,32,0.189,169,25,6,0.194,31,0,0,0,0,0,0,0,0,0,0,0,0,47,12,0.203,59,0,0,0,0,163,56,0.256,219,48,23,0.324,71,49,7,0.125,56,0,0,0,0,36,8,0.182,44,49,14,0.222,63,0,0,0,0,49,11,0.183,60,98,25,0.203,123,21,7,0.25,28,0,0,0,0,44,11,0.2,55,137,29,0.175,166,0,0,0,0,0,0,0,0,18,15,0.455,33,17,4,0.19,21,28,5,0.152,33,0,0,0,0,39,13,0.25,52,74,23,0.237,97,52,13,0.2,65,35,26,0.426,61,32,7,0.179,39,0,0,0,0,0,0,0,0,29,4,0.121,33,21,7,0.25,28,0,0,0,0,22,6,0.214,28,0,0,0,0,0,0,0,0,18,5,0.217,23,60,10,0.143,70,78,24,0.235,102,70,16,0.186,86,49,11,0.183,60,110,36,0.247,146,117,16,0.12,133,90,21,0.189,111,35,8,0.186,43,15,10,0.4,25,44,8,0.154,52,0,0,0,0,0,0,0,0,0,0,0,0,21,5,0.192,26,59,9,0.132,68,0,0,0,0,24,5,0.172,29,56,17,0.233,73,27,7,0.206,34,15,7,0.318,22,0,0,0,0,50,18,0.265,68,81,34,0.296,115,21,11,0.344,32,0,0,0,0,157,39,0.199,196,25,8,0.242,33,26,8,0.235,34,0,0,0,0,16,8,0.333,24,46,20,0.303,66,0,0,0,0,53,28,0.346,81,57,30,0.345,87,132,45,0.254,177,31,17,0.354,48,64,34,0.347,98,24,9,0.273,33,0,0,0,0,32,7,0.179,39,103,26,0.202,129,211,80,0.275,291,133,36,0.213,169,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429008,"A","G","No","TMEM88B","2kb_downstream_variant","NA",34,37,0.708,0.822,1808,2295,446,642,2254,2937,0.143,0.182,0.069,71,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167315;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364388,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1857,1,0,"A,R","ALU","intergenic",24,6,0.2,30,61,18,0.228,79,43,13,0.232,56,18,4,0.182,22,52,13,0.2,65,64,9,0.123,73,116,26,0.183,142,77,14,0.154,91,0,0,0,0,21,7,0.25,28,143,25,0.149,168,27,4,0.129,31,0,0,0,0,0,0,0,0,0,0,0,0,48,11,0.186,59,0,0,0,0,160,59,0.269,219,63,8,0.113,71,46,10,0.179,56,0,0,0,0,33,11,0.25,44,56,8,0.125,64,33,7,0.175,40,50,10,0.167,60,101,22,0.179,123,21,6,0.222,27,0,0,0,0,47,8,0.145,55,127,37,0.226,164,0,0,0,0,0,0,0,0,25,8,0.242,33,16,5,0.238,21,23,9,0.281,32,0,0,0,0,34,17,0.333,51,79,19,0.194,98,53,12,0.185,65,49,11,0.183,60,30,8,0.211,38,0,0,0,0,0,0,0,0,26,7,0.212,33,20,8,0.286,28,0,0,0,0,22,6,0.214,28,0,0,0,0,0,0,0,0,20,3,0.13,23,60,10,0.143,70,84,20,0.192,104,66,21,0.241,87,50,10,0.167,60,122,23,0.159,145,103,30,0.226,133,87,23,0.209,110,38,5,0.116,43,22,3,0.12,25,39,12,0.235,51,64,16,0.2,80,0,0,0,0,0,0,0,0,20,6,0.231,26,57,11,0.162,68,20,11,0.355,31,21,8,0.276,29,55,19,0.257,74,23,11,0.324,34,19,3,0.136,22,0,0,0,0,57,11,0.162,68,96,19,0.165,115,26,6,0.188,32,0,0,0,0,157,39,0.199,196,26,7,0.212,33,26,9,0.257,35,0,0,0,0,16,7,0.304,23,48,18,0.273,66,0,0,0,0,62,19,0.235,81,61,26,0.299,87,143,36,0.201,179,29,18,0.383,47,76,21,0.216,97,22,11,0.333,33,0,0,0,0,32,6,0.158,38,105,24,0.186,129,231,64,0.217,295,112,56,0.333,168,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","rs974850498","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429009,"A","G","No","TMEM88B","2kb_downstream_variant","NA",31,37,0.646,0.822,1678,2288,470,647,2148,2935,0.144,0.179,0.1294,68,"SRR12165859;SRR12166096;SRR12166108;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364389,"NA","NA","NA","NA","NA","NA","hyper","+","ADAR",1856,1,0,"A,R","ALU","intergenic",23,7,0.233,30,61,17,0.218,78,48,8,0.143,56,0,0,0,0,0,0,0,0,63,10,0.137,73,111,30,0.213,141,71,20,0.22,91,0,0,0,0,21,6,0.222,27,139,29,0.173,168,25,9,0.265,34,0,0,0,0,0,0,0,0,0,0,0,0,46,13,0.22,59,0,0,0,0,163,56,0.256,219,55,16,0.225,71,46,10,0.179,56,0,0,0,0,32,12,0.273,44,55,11,0.167,66,32,8,0.2,40,50,10,0.167,60,99,25,0.202,124,19,9,0.321,28,0,0,0,0,41,15,0.268,56,121,43,0.262,164,0,0,0,0,0,0,0,0,19,13,0.406,32,0,0,0,0,22,8,0.267,30,0,0,0,0,33,17,0.34,50,76,22,0.224,98,54,12,0.182,66,51,9,0.15,60,29,9,0.237,38,0,0,0,0,0,0,0,0,26,7,0.212,33,24,4,0.143,28,0,0,0,0,23,5,0.179,28,0,0,0,0,0,0,0,0,18,5,0.217,23,54,16,0.229,70,82,24,0.226,106,76,10,0.116,86,52,8,0.133,60,116,29,0.2,145,111,22,0.165,133,77,33,0.3,110,32,10,0.238,42,20,5,0.2,25,33,15,0.312,48,68,12,0.15,80,0,0,0,0,0,0,0,0,20,6,0.231,26,57,12,0.174,69,20,11,0.355,31,24,5,0.172,29,54,20,0.27,74,30,4,0.118,34,14,8,0.364,22,0,0,0,0,55,13,0.191,68,81,34,0.296,115,22,10,0.312,32,0,0,0,0,154,43,0.218,197,29,4,0.121,33,30,5,0.143,35,0,0,0,0,20,3,0.13,23,50,17,0.254,67,0,0,0,0,65,17,0.207,82,72,14,0.163,86,129,51,0.283,180,37,10,0.213,47,74,22,0.229,96,27,6,0.182,33,0,0,0,0,28,10,0.263,38,99,30,0.233,129,228,66,0.224,294,130,37,0.222,167,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429010,"A","G","No","TMEM88B","2kb_downstream_variant","NA",35,37,0.729,0.822,1622,2036,658,909,2280,2945,0.206,0.245,0.155,72,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167315;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364390,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1855,1,0,"A,R","ALU","intergenic",22,8,0.267,30,48,30,0.385,78,40,16,0.286,56,15,7,0.318,22,47,17,0.266,64,57,17,0.23,74,98,43,0.305,141,61,31,0.337,92,0,0,0,0,16,10,0.385,26,128,41,0.243,169,22,13,0.371,35,0,0,0,0,0,0,0,0,0,0,0,0,43,17,0.283,60,0,0,0,0,152,67,0.306,219,50,20,0.286,70,42,14,0.25,56,0,0,0,0,32,12,0.273,44,47,19,0.288,66,32,8,0.2,40,46,14,0.233,60,99,25,0.202,124,23,5,0.179,28,0,0,0,0,45,11,0.196,56,107,61,0.363,168,0,0,0,0,0,0,0,0,22,10,0.312,32,16,5,0.238,21,23,7,0.233,30,0,0,0,0,34,16,0.32,50,63,35,0.357,98,46,20,0.303,66,39,19,0.328,58,24,14,0.368,38,0,0,0,0,0,0,0,0,27,6,0.182,33,20,8,0.286,28,0,0,0,0,20,8,0.286,28,16,4,0.2,20,0,0,0,0,16,7,0.304,23,54,17,0.239,71,74,32,0.302,106,61,26,0.299,87,48,12,0.2,60,100,46,0.315,146,99,34,0.256,133,78,32,0.291,110,31,10,0.244,41,20,6,0.231,26,38,10,0.208,48,62,20,0.244,82,0,0,0,0,0,0,0,0,17,9,0.346,26,52,17,0.246,69,26,5,0.161,31,20,9,0.31,29,53,21,0.284,74,27,8,0.229,35,13,9,0.409,22,0,0,0,0,48,20,0.294,68,77,39,0.336,116,21,11,0.344,32,0,0,0,0,138,60,0.303,198,26,7,0.212,33,27,8,0.229,35,0,0,0,0,16,7,0.304,23,47,22,0.319,69,0,0,0,0,48,34,0.415,82,51,35,0.407,86,119,61,0.339,180,30,17,0.362,47,62,33,0.347,95,22,11,0.333,33,0,0,0,0,25,13,0.342,38,84,45,0.349,129,191,103,0.35,294,115,53,0.315,168,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429011,"A","G","No","TMEM88B","2kb_downstream_variant","NA",28,36,0.583,0.8,1705,2427,355,491,2060,2918,0.105,0.141,0.0756,64,"SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166573;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167867;SRR12167869;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166978;SRR12167002;SRR12167012;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364391,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1854,1,0,"A,R","ALU","intergenic",0,0,0,0,67,13,0.163,80,47,8,0.145,55,0,0,0,0,49,15,0.234,64,62,12,0.162,74,118,22,0.157,140,79,14,0.151,93,0,0,0,0,22,4,0.154,26,148,22,0.129,170,31,4,0.114,35,0,0,0,0,0,0,0,0,0,0,0,0,46,13,0.22,59,0,0,0,0,182,38,0.173,220,50,18,0.265,68,50,6,0.107,56,0,0,0,0,34,10,0.227,44,0,0,0,0,33,7,0.175,40,52,8,0.133,60,95,29,0.234,124,21,7,0.25,28,0,0,0,0,47,10,0.175,57,145,23,0.137,168,0,0,0,0,0,0,0,0,24,8,0.25,32,0,0,0,0,26,4,0.133,30,0,0,0,0,45,7,0.135,52,88,12,0.12,100,57,9,0.136,66,39,19,0.328,58,0,0,0,0,0,0,0,0,0,0,0,0,29,4,0.121,33,19,9,0.321,28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,3,0.13,23,64,9,0.123,73,94,13,0.121,107,75,12,0.138,87,46,13,0.22,59,120,28,0.189,148,114,20,0.149,134,94,16,0.145,110,37,5,0.119,42,22,4,0.154,26,40,7,0.149,47,72,11,0.133,83,0,0,0,0,0,0,0,0,20,6,0.231,26,59,10,0.145,69,23,8,0.258,31,25,4,0.138,29,64,10,0.135,74,23,12,0.343,35,19,3,0.136,22,0,0,0,0,59,9,0.132,68,100,17,0.145,117,0,0,0,0,0,0,0,0,171,26,0.132,197,28,4,0.125,32,28,7,0.2,35,0,0,0,0,17,6,0.261,23,56,13,0.188,69,0,0,0,0,61,22,0.265,83,71,15,0.174,86,145,34,0.19,179,36,11,0.234,47,69,26,0.274,95,24,9,0.273,33,0,0,0,0,34,4,0.105,38,110,19,0.147,129,246,48,0.163,294,141,27,0.161,168,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429012,"A","G","No","TMEM88B","2kb_downstream_variant","NA",17,24,0.354,0.533,1098,1718,163,277,1261,1995,0.047,0.08,0.0324,41,"SRR12165859;SRR12166096;SRR12166184;SRR12166187;SRR12166435;SRR12166459;SRR12166464;SRR12166753;SRR12166775;SRR12167141;SRR12167145;SRR12167307;SRR12167393;SRR12167397;SRR12167685;SRR12167727;SRR12167860;SRR12165815;SRR12166237;SRR12166310;SRR12166321;SRR12166659;SRR12166748;SRR12166783;SRR12166832;SRR12166869;SRR12166912;SRR12166924;SRR12166967;SRR12167002;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167395;SRR12167407;SRR12167468","chr1",1364392,"NA","NA","NA","NA","NA","NA","regular","+","ADAR",1853,1,0,"A,R","ALU","intergenic",27,3,0.1,30,70,10,0.125,80,0,0,0,0,0,0,0,0,57,8,0.123,65,0,0,0,0,127,16,0.112,143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,54,7,0.115,61,0,0,0,0,197,29,0.128,226,62,7,0.101,69,0,0,0,0,0,0,0,0,0,0,0,0,57,9,0.136,66,0,0,0,0,55,7,0.113,62,0,0,0,0,0,0,0,0,0,0,0,0,47,9,0.161,56,146,23,0.136,169,0,0,0,0,0,0,0,0,26,6,0.188,32,0,0,0,0,26,4,0.133,30,0,0,0,0,44,11,0.2,55,0,0,0,0,0,0,0,0,53,6,0.102,59,33,5,0.132,38,17,3,0.15,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,3,0.13,23,0,0,0,0,94,15,0.138,109,0,0,0,0,0,0,0,0,134,16,0.107,150,116,20,0.147,136,0,0,0,0,0,0,0,0,0,0,0,0,40,8,0.167,48,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,62,7,0.101,69,26,5,0.161,31,22,7,0.241,29,0,0,0,0,29,7,0.194,36,0,0,0,0,0,0,0,0,61,10,0.141,71,104,16,0.133,120,25,6,0.194,31,0,0,0,0,0,0,0,0,29,4,0.121,33,0,0,0,0,17,3,0.15,20,19,4,0.174,23,58,14,0.194,72,0,0,0,0,73,10,0.12,83,71,15,0.174,86,158,21,0.117,179,38,9,0.191,47,87,11,0.112,98,0,0,0,0,0,0,0,0,33,4,0.108,37,0,0,0,0,264,32,0.108,296,138,30,0.179,168,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429022,"A","G","No","TMEM88B","2kb_downstream_variant","NA",38,39,0.792,0.867,1833,2185,788,989,2621,3174,0.221,0.279,0.042,77,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167315;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364402,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1843,0,1.842,"A,R","ALU","intergenic",23,8,0.258,31,66,21,0.241,87,37,23,0.383,60,13,10,0.435,23,52,32,0.381,84,68,25,0.269,93,122,40,0.247,162,82,30,0.268,112,0,0,0,0,26,7,0.212,33,132,78,0.371,210,31,8,0.205,39,0,0,0,0,0,0,0,0,16,4,0.2,20,46,16,0.258,62,0,0,0,0,164,81,0.331,245,57,21,0.269,78,52,16,0.235,68,0,0,0,0,34,16,0.32,50,41,28,0.406,69,42,6,0.125,48,49,22,0.31,71,82,50,0.379,132,25,6,0.194,31,0,0,0,0,38,14,0.269,52,123,52,0.297,175,0,0,0,0,0,0,0,0,25,7,0.219,32,17,5,0.227,22,24,8,0.25,32,0,0,0,0,34,22,0.393,56,74,36,0.327,110,54,25,0.316,79,39,22,0.361,61,23,13,0.361,36,16,5,0.238,21,18,2,0.1,20,23,13,0.361,36,23,7,0.233,30,0,0,0,0,24,5,0.172,29,18,4,0.182,22,0,0,0,0,17,9,0.346,26,51,21,0.292,72,75,36,0.324,111,77,29,0.274,106,56,16,0.222,72,106,47,0.307,153,104,42,0.288,146,98,39,0.285,137,36,11,0.234,47,16,12,0.429,28,28,19,0.404,47,69,21,0.233,90,0,0,0,0,16,6,0.273,22,21,8,0.276,29,53,22,0.293,75,22,11,0.333,33,14,11,0.44,25,56,22,0.282,78,33,8,0.195,41,16,7,0.304,23,0,0,0,0,57,24,0.296,81,90,34,0.274,124,16,15,0.484,31,0,0,0,0,134,63,0.32,197,26,7,0.212,33,28,9,0.243,37,11,11,0.5,22,11,15,0.577,26,46,32,0.41,78,0,0,0,0,59,23,0.28,82,59,27,0.314,86,130,52,0.286,182,32,13,0.289,45,66,32,0.327,98,25,10,0.286,35,0,0,0,0,21,18,0.462,39,99,34,0.256,133,193,118,0.379,311,118,55,0.318,173,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSq2","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429058,"A","G","No","TMEM88B","2kb_downstream_variant","NA",36,38,0.75,0.844,1436,1834,1028,1308,2464,3142,0.314,0.349,0.3638,74,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364438,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1807,0,1.842,"A,R","ALU","intergenic",21,15,0.417,36,65,58,0.472,123,43,41,0.488,84,9,12,0.571,21,43,30,0.411,73,64,19,0.229,83,88,47,0.348,135,62,53,0.461,115,0,0,0,0,17,16,0.485,33,127,56,0.306,183,26,18,0.409,44,0,0,0,0,0,0,0,0,0,0,0,0,36,29,0.446,65,0,0,0,0,113,117,0.509,230,37,28,0.431,65,40,17,0.298,57,13,9,0.409,22,27,15,0.357,42,34,23,0.404,57,29,7,0.194,36,35,25,0.417,60,59,46,0.438,105,20,10,0.333,30,0,0,0,0,34,33,0.493,67,93,75,0.446,168,0,0,0,0,0,0,0,0,19,14,0.424,33,0,0,0,0,15,19,0.559,34,0,0,0,0,35,31,0.47,66,48,50,0.51,98,49,15,0.234,64,39,24,0.381,63,21,15,0.417,36,8,13,0.619,21,0,0,0,0,24,17,0.415,41,13,12,0.48,25,0,0,0,0,15,9,0.375,24,15,10,0.4,25,0,0,0,0,0,0,0,0,32,21,0.396,53,69,37,0.349,106,68,42,0.382,110,35,27,0.435,62,96,59,0.381,155,77,62,0.446,139,75,41,0.353,116,30,18,0.375,48,11,9,0.45,20,39,22,0.361,61,61,38,0.384,99,12,8,0.4,20,14,12,0.462,26,0,0,0,0,38,25,0.397,63,19,5,0.208,24,23,14,0.378,37,40,30,0.429,70,22,11,0.333,33,11,10,0.476,21,0,0,0,0,49,30,0.38,79,61,45,0.425,106,15,13,0.464,28,0,0,0,0,92,72,0.439,164,20,11,0.355,31,28,11,0.282,39,19,14,0.424,33,14,22,0.611,36,59,45,0.433,104,0,0,0,0,48,39,0.448,87,47,43,0.478,90,111,87,0.439,198,24,29,0.547,53,65,39,0.375,104,16,21,0.568,37,0,0,0,0,32,13,0.289,45,78,65,0.455,143,180,130,0.419,310,104,88,0.458,192,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSq2","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429071,"A","G","No","TMEM88B","2kb_downstream_variant","NA",27,31,0.562,0.689,1718,2506,321,436,2039,2942,0.092,0.101,0.6076,58,"SRR12165859;SRR12166108;SRR12166184;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166510;SRR12166573;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167869;SRR12167879;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166740;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364451,"NA","NA","NA","NA","NA","NA","regular","+","ADAR",1794,0,1.842,"A,R","ALU","intergenic",34,9,0.209,43,0,0,0,0,69,16,0.188,85,0,0,0,0,70,8,0.103,78,0,0,0,0,122,18,0.129,140,99,11,0.1,110,0,0,0,0,30,5,0.143,35,166,31,0.157,197,40,8,0.167,48,0,0,0,0,0,0,0,0,0,0,0,0,53,12,0.185,65,0,0,0,0,169,45,0.21,214,62,9,0.127,71,0,0,0,0,18,4,0.182,22,37,9,0.196,46,0,0,0,0,0,0,0,0,56,7,0.111,63,95,12,0.112,107,24,4,0.143,28,0,0,0,0,52,14,0.212,66,148,20,0.119,168,0,0,0,0,0,0,0,0,28,8,0.222,36,0,0,0,0,0,0,0,0,0,0,0,0,57,13,0.186,70,84,18,0.176,102,62,8,0.114,70,52,11,0.175,63,30,7,0.189,37,19,4,0.174,23,0,0,0,0,0,0,0,0,18,6,0.25,24,0,0,0,0,0,0,0,0,24,4,0.143,28,0,0,0,0,0,0,0,0,54,6,0.1,60,96,12,0.111,108,95,19,0.167,114,55,9,0.141,64,130,29,0.182,159,128,19,0.129,147,111,16,0.126,127,35,12,0.255,47,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24,5,0.172,29,0,0,0,0,59,7,0.106,66,23,4,0.148,27,31,6,0.162,37,61,9,0.129,70,0,0,0,0,0,0,0,0,0,0,0,0,78,11,0.124,89,97,17,0.149,114,26,3,0.103,29,0,0,0,0,157,20,0.113,177,27,4,0.129,31,37,6,0.14,43,32,4,0.111,36,33,8,0.195,41,87,26,0.23,113,0,0,0,0,69,14,0.169,83,72,19,0.209,91,180,25,0.122,205,0,0,0,0,99,11,0.1,110,35,5,0.125,40,0,0,0,0,44,6,0.12,50,118,18,0.132,136,254,55,0.178,309,159,31,0.163,190,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSq2","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429075,"A","G","No","TMEM88B","2kb_downstream_variant","NA",38,36,0.792,0.8,1992,2419,610,828,2602,3247,0.179,0.203,0.3358,74,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364455,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1790,0,1.379,"A,R","ALU","intergenic",35,9,0.205,44,107,32,0.23,139,63,22,0.259,85,18,4,0.182,22,65,14,0.177,79,68,16,0.19,84,104,35,0.252,139,81,28,0.257,109,0,0,0,0,22,12,0.353,34,164,32,0.163,196,37,13,0.26,50,0,0,0,0,0,0,0,0,16,4,0.2,20,44,21,0.323,65,0,0,0,0,143,78,0.353,221,62,12,0.162,74,56,8,0.125,64,15,8,0.348,23,38,11,0.224,49,57,8,0.123,65,25,8,0.242,33,51,12,0.19,63,81,30,0.27,111,22,8,0.267,30,0,0,0,0,59,9,0.132,68,123,45,0.268,168,18,4,0.182,22,0,0,0,0,26,8,0.235,34,0,0,0,0,26,8,0.235,34,0,0,0,0,50,20,0.286,70,75,30,0.286,105,57,14,0.197,71,50,12,0.194,62,27,6,0.182,33,19,4,0.174,23,18,2,0.1,20,34,5,0.128,39,17,7,0.292,24,0,0,0,0,0,0,0,0,19,11,0.367,30,0,0,0,0,17,3,0.15,20,46,18,0.281,64,90,18,0.167,108,82,31,0.274,113,50,15,0.231,65,118,43,0.267,161,97,50,0.34,147,96,33,0.256,129,38,9,0.191,47,0,0,0,0,53,12,0.185,65,81,21,0.206,102,0,0,0,0,25,3,0.107,28,0,0,0,0,53,13,0.197,66,17,12,0.414,29,27,10,0.27,37,55,19,0.257,74,30,6,0.167,36,0,0,0,0,0,0,0,0,75,15,0.167,90,89,23,0.205,112,20,9,0.31,29,0,0,0,0,142,35,0.198,177,22,10,0.312,32,34,11,0.244,45,24,14,0.368,38,34,7,0.171,41,74,37,0.333,111,0,0,0,0,55,29,0.345,84,62,23,0.271,85,150,59,0.282,209,39,21,0.35,60,85,27,0.241,112,30,11,0.268,41,0,0,0,0,35,18,0.34,53,101,32,0.241,133,228,85,0.272,313,145,46,0.241,191,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSq2","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429090,"A","G","No","TMEM88B","2kb_downstream_variant","NA",39,40,0.812,0.889,1777,2162,1057,1378,2834,3540,0.301,0.353,0.1159,79,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364470,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1775,0,1.842,"A,R","ALU","intergenic",34,21,0.382,55,101,49,0.327,150,57,38,0.4,95,18,8,0.308,26,43,36,0.456,79,52,30,0.366,82,80,54,0.403,134,68,34,0.333,102,0,0,0,0,18,20,0.526,38,125,64,0.339,189,42,18,0.3,60,0,0,0,0,0,0,0,0,12,8,0.4,20,39,29,0.426,68,0,0,0,0,124,103,0.454,227,61,22,0.265,83,55,17,0.236,72,15,9,0.375,24,28,27,0.491,55,53,22,0.293,75,32,7,0.179,39,41,27,0.397,68,82,41,0.333,123,21,13,0.382,34,0,0,0,0,52,29,0.358,81,116,69,0.373,185,13,11,0.458,24,0,0,0,0,25,13,0.342,38,0,0,0,0,22,18,0.45,40,0,0,0,0,35,47,0.573,82,80,44,0.355,124,57,23,0.287,80,35,26,0.426,61,23,12,0.343,35,15,8,0.348,23,18,4,0.182,22,24,19,0.442,43,13,11,0.458,24,0,0,0,0,22,11,0.333,33,26,15,0.366,41,0,0,0,0,13,8,0.381,21,45,27,0.375,72,63,48,0.432,111,81,40,0.331,121,51,26,0.338,77,102,71,0.41,173,88,58,0.397,146,83,51,0.381,134,25,20,0.444,45,16,4,0.2,20,39,30,0.435,69,77,39,0.336,116,9,12,0.571,21,21,7,0.25,28,8,15,0.652,23,46,28,0.378,74,19,14,0.424,33,23,21,0.477,44,42,36,0.462,78,29,18,0.383,47,19,9,0.321,28,0,0,0,0,53,40,0.43,93,73,46,0.387,119,16,16,0.5,32,0,0,0,0,115,65,0.361,180,26,14,0.35,40,32,18,0.36,50,17,27,0.614,44,26,17,0.395,43,60,54,0.474,114,0,0,0,0,56,40,0.417,96,56,32,0.364,88,132,73,0.356,205,41,25,0.379,66,72,42,0.368,114,24,16,0.4,40,0,0,0,0,45,12,0.211,57,82,59,0.418,141,216,130,0.376,346,121,70,0.366,191,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSq2","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429094,"A","G","No","TMEM88B","2kb_downstream_variant","NA",39,40,0.812,0.889,1306,1448,1592,2134,2898,3582,0.444,0.522,0.0887,79,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364474,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1771,0,1.557,"A,R","ALU","intergenic",22,38,0.633,60,67,87,0.565,154,38,60,0.612,98,17,9,0.346,26,48,33,0.407,81,35,47,0.573,82,58,72,0.554,130,55,49,0.471,104,0,0,0,0,17,23,0.575,40,96,91,0.487,187,29,37,0.561,66,0,0,0,0,0,0,0,0,11,9,0.45,20,20,50,0.714,70,0,0,0,0,83,154,0.65,237,41,45,0.523,86,41,34,0.453,75,12,13,0.52,25,22,34,0.607,56,44,33,0.429,77,24,17,0.415,41,31,38,0.551,69,54,67,0.554,121,18,19,0.514,37,0,0,0,0,30,52,0.634,82,95,89,0.484,184,10,14,0.583,24,0,0,0,0,12,27,0.692,39,0,0,0,0,25,16,0.39,41,0,0,0,0,24,63,0.724,87,64,65,0.504,129,38,46,0.548,84,33,27,0.45,60,13,23,0.639,36,8,16,0.667,24,12,12,0.5,24,16,28,0.636,44,9,15,0.625,24,0,0,0,0,13,21,0.618,34,21,19,0.475,40,0,0,0,0,13,10,0.435,23,31,45,0.592,76,48,60,0.556,108,59,69,0.539,128,35,43,0.551,78,70,109,0.609,179,63,84,0.571,147,49,83,0.629,132,16,27,0.628,43,12,8,0.4,20,34,40,0.541,74,53,63,0.543,116,6,14,0.7,20,16,13,0.448,29,7,18,0.72,25,29,43,0.597,72,17,18,0.514,35,21,20,0.488,41,34,47,0.58,81,23,27,0.54,50,15,12,0.444,27,0,0,0,0,34,61,0.642,95,51,72,0.585,123,13,23,0.639,36,0,0,0,0,73,112,0.605,185,18,23,0.561,41,26,25,0.49,51,9,38,0.809,47,14,27,0.659,41,42,75,0.641,117,0,0,0,0,30,68,0.694,98,29,58,0.667,87,88,114,0.564,202,21,48,0.696,69,49,64,0.566,113,11,28,0.718,39,0,0,0,0,30,29,0.492,59,50,92,0.648,142,132,212,0.616,344,77,112,0.593,189,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSq2","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429201,"A","G","No","TMEM88B","2kb_downstream_variant","NA",31,37,0.646,0.822,1732,2390,469,643,2201,3033,0.138,0.177,0.0835,68,"SRR12165859;SRR12166096;SRR12166108;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166510;SRR12166573;SRR12166759;SRR12166775;SRR12166823;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167685;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166832;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364581,"NA","NA","NA","NA","NA","NA","regular","+","ADAR",1664,0,1.842,"A,R","NONREP","intergenic",58,11,0.159,69,114,16,0.123,130,67,13,0.163,80,0,0,0,0,0,0,0,0,61,17,0.218,78,99,23,0.189,122,67,19,0.221,86,0,0,0,0,36,14,0.28,50,109,35,0.243,144,39,11,0.22,50,0,0,0,0,0,0,0,0,0,0,0,0,53,12,0.185,65,22,5,0.185,27,152,46,0.232,198,0,0,0,0,0,0,0,0,15,5,0.25,20,46,11,0.193,57,0,0,0,0,43,6,0.122,49,37,12,0.245,49,112,37,0.248,149,0,0,0,0,0,0,0,0,72,14,0.163,86,93,33,0.262,126,20,5,0.2,25,0,0,0,0,38,6,0.136,44,15,8,0.348,23,44,9,0.17,53,16,7,0.304,23,60,28,0.318,88,81,27,0.25,108,0,0,0,0,41,11,0.212,52,0,0,0,0,0,0,0,0,0,0,0,0,29,7,0.194,36,18,6,0.25,24,0,0,0,0,47,9,0.161,56,28,6,0.176,34,0,0,0,0,20,10,0.333,30,74,21,0.221,95,81,18,0.182,99,0,0,0,0,50,14,0.219,64,103,24,0.189,127,97,21,0.178,118,81,30,0.27,111,28,11,0.282,39,15,7,0.318,22,57,7,0.109,64,97,11,0.102,108,0,0,0,0,15,6,0.286,21,16,9,0.36,25,38,9,0.191,47,0,0,0,0,42,6,0.125,48,0,0,0,0,59,10,0.145,69,15,8,0.348,23,23,4,0.148,27,65,15,0.188,80,0,0,0,0,25,9,0.265,34,0,0,0,0,138,33,0.193,171,19,6,0.24,25,46,7,0.132,53,38,14,0.269,52,46,9,0.164,55,93,46,0.331,139,20,4,0.167,24,66,21,0.241,87,71,11,0.134,82,115,39,0.253,154,61,16,0.208,77,98,28,0.222,126,33,9,0.214,42,0,0,0,0,52,6,0.103,58,115,33,0.223,148,229,80,0.259,309,149,31,0.172,180,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429241,"A","G","No","TMEM88B","2kb_downstream_variant","NA",40,42,0.833,0.933,2009,2655,704,981,2713,3636,0.21,0.262,0.0271,82,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364621,"NA","NA","NA","NA","NA","NA","regular","+","ADAR",1624,0,1.95,"A,R","ALU","intergenic",66,17,0.205,83,102,34,0.25,136,55,24,0.304,79,20,3,0.13,23,69,14,0.169,83,67,12,0.152,79,89,30,0.252,119,72,21,0.226,93,0,0,0,0,37,11,0.229,48,109,37,0.253,146,40,16,0.286,56,0,0,0,0,0,0,0,0,18,4,0.182,22,37,15,0.288,52,0,0,0,0,116,66,0.363,182,69,17,0.198,86,31,9,0.225,40,19,7,0.269,26,40,11,0.216,51,56,8,0.125,64,40,16,0.286,56,35,9,0.205,44,118,38,0.244,156,30,7,0.189,37,0,0,0,0,60,26,0.302,86,70,46,0.397,116,20,12,0.375,32,0,0,0,0,33,6,0.154,39,0,0,0,0,45,10,0.182,55,20,7,0.259,27,57,36,0.387,93,81,29,0.264,110,67,21,0.239,88,36,13,0.265,49,28,8,0.222,36,15,6,0.286,21,27,10,0.27,37,21,17,0.447,38,22,13,0.371,35,0,0,0,0,45,10,0.182,55,27,8,0.229,35,0,0,0,0,16,10,0.385,26,69,31,0.31,100,76,27,0.262,103,100,26,0.206,126,48,13,0.213,61,108,32,0.229,140,86,38,0.306,124,78,30,0.278,108,28,10,0.263,38,11,9,0.45,20,51,17,0.25,68,96,29,0.232,125,12,8,0.4,20,11,10,0.476,21,18,9,0.333,27,27,22,0.449,49,31,14,0.311,45,46,14,0.233,60,53,24,0.312,77,51,12,0.19,63,27,5,0.156,32,22,6,0.214,28,75,20,0.211,95,91,32,0.26,123,23,10,0.303,33,0,0,0,0,150,55,0.268,205,28,7,0.2,35,41,7,0.146,48,38,26,0.406,64,47,11,0.19,58,108,54,0.333,162,19,10,0.345,29,61,27,0.307,88,56,26,0.317,82,137,40,0.226,177,60,22,0.268,82,101,42,0.294,143,38,16,0.296,54,0,0,0,0,44,9,0.17,53,124,35,0.22,159,206,86,0.295,292,143,50,0.259,193,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSx4","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429269,"A","G","No","TMEM88B","2kb_downstream_variant","NA",29,32,0.604,0.711,1798,2540,298,397,2096,2937,0.09,0.1,0.5417,61,"SRR12165859;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166221;SRR12166268;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167860;SRR12167875;SRR12167879;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166346;SRR12166554;SRR12166736;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1364649,"NA","NA","NA","NA","NA","NA","regular","+","ADAR",1596,0,1.842,"A,R","ALU","intergenic",78,12,0.133,90,0,0,0,0,0,0,0,0,17,4,0.19,21,75,9,0.107,84,74,10,0.119,84,113,19,0.144,132,0,0,0,0,0,0,0,0,50,8,0.138,58,125,19,0.132,144,0,0,0,0,0,0,0,0,0,0,0,0,24,3,0.111,27,46,8,0.148,54,0,0,0,0,154,26,0.144,180,83,10,0.108,93,0,0,0,0,0,0,0,0,38,7,0.156,45,69,8,0.104,77,50,6,0.107,56,44,6,0.12,50,142,26,0.155,168,34,5,0.128,39,17,4,0.19,21,61,8,0.116,69,100,17,0.145,117,0,0,0,0,0,0,0,0,0,0,0,0,23,5,0.179,28,43,5,0.104,48,16,7,0.304,23,66,12,0.154,78,95,21,0.181,116,74,14,0.159,88,0,0,0,0,0,0,0,0,18,7,0.28,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43,9,0.173,52,26,3,0.103,29,0,0,0,0,0,0,0,0,0,0,0,0,89,14,0.136,103,114,17,0.13,131,50,9,0.153,59,131,15,0.103,146,111,16,0.126,127,0,0,0,0,41,5,0.109,46,25,4,0.138,29,0,0,0,0,0,0,0,0,17,3,0.15,20,0,0,0,0,0,0,0,0,38,8,0.174,46,38,8,0.174,46,55,8,0.127,63,65,11,0.145,76,61,9,0.129,70,24,7,0.226,31,28,7,0.2,35,77,12,0.135,89,106,17,0.138,123,25,3,0.107,28,0,0,0,0,179,30,0.144,209,0,0,0,0,0,0,0,0,51,7,0.121,58,52,7,0.119,59,137,17,0.11,154,22,5,0.185,27,71,11,0.134,82,59,11,0.157,70,139,23,0.142,162,65,10,0.133,75,121,15,0.11,136,0,0,0,0,0,0,0,0,43,6,0.122,49,124,20,0.139,144,234,38,0.14,272,148,24,0.14,172,"NA","NA","Predicted to enable PDZ domain binding activity. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSx4","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429885,"A","G","No","LINC01770","lnc_RNA","NA",39,40,0.812,0.889,1715,2151,610,836,2325,2987,0.205,0.245,0.1152,79,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365265,"NA","NA","NA","[\"FOXA1\", \"FOXA2\", \"KAP1\", \"MYBL2\", \"POLR2A\", \"SPI1\", \"ZBTB7A\"]","CTCF_binding_site","ENSR00000344631","regular_and_hyper","+","ADAR",980,0,1.449,"A,R","ALU","downstream",43,18,0.295,61,115,48,0.294,163,69,25,0.266,94,24,4,0.143,28,44,18,0.29,62,60,15,0.2,75,75,30,0.286,105,45,12,0.211,57,0,0,0,0,30,12,0.286,42,88,20,0.185,108,29,22,0.431,51,0,0,0,0,0,0,0,0,18,3,0.143,21,47,17,0.266,64,16,4,0.2,20,76,45,0.372,121,66,19,0.224,85,29,5,0.147,34,0,0,0,0,25,10,0.286,35,45,11,0.196,56,33,4,0.108,37,29,12,0.293,41,80,29,0.266,109,19,8,0.296,27,17,7,0.292,24,55,9,0.141,64,75,32,0.299,107,20,10,0.333,30,0,0,0,0,52,22,0.297,74,0,0,0,0,29,9,0.237,38,13,7,0.35,20,47,35,0.427,82,69,24,0.258,93,50,15,0.231,65,34,9,0.209,43,37,9,0.196,46,0,0,0,0,0,0,0,0,24,7,0.226,31,20,6,0.231,26,0,0,0,0,37,5,0.119,42,31,13,0.295,44,0,0,0,0,19,7,0.269,26,41,13,0.241,54,36,26,0.419,62,71,23,0.245,94,57,15,0.208,72,91,48,0.345,139,87,32,0.269,119,57,20,0.26,77,20,12,0.375,32,14,6,0.3,20,53,12,0.185,65,85,29,0.254,114,0,0,0,0,21,8,0.276,29,24,10,0.294,34,42,10,0.192,52,19,9,0.321,28,28,12,0.3,40,47,14,0.23,61,38,6,0.136,44,22,9,0.29,31,18,3,0.143,21,61,21,0.256,82,85,25,0.227,110,30,5,0.143,35,0,0,0,0,101,45,0.308,146,26,4,0.133,30,26,7,0.212,33,22,21,0.488,43,22,6,0.214,28,74,38,0.339,112,18,17,0.486,35,87,40,0.315,127,74,42,0.362,116,0,0,0,0,48,20,0.294,68,95,43,0.312,138,28,25,0.472,53,0,0,0,0,65,10,0.133,75,99,30,0.233,129,164,73,0.308,237,136,40,0.227,176,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","rs1216893348","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429930,"A","G","No","LINC01770","lnc_RNA","NA",40,40,0.833,0.889,964,1202,2163,2863,3127,4065,0.576,0.618,0.4258,80,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365310,"NA","NA","NA","[\"FOXA1\", \"FOXA2\", \"KAP1\", \"MYBL2\", \"POLR2A\"]","CTCF_binding_site","ENSR00000344631","regular_and_hyper","+","ADAR",935,0,1.842,"A,R","ALU","downstream",18,38,0.679,56,79,156,0.664,235,33,91,0.734,124,9,28,0.757,37,28,77,0.733,105,37,85,0.697,122,45,127,0.738,172,29,64,0.688,93,0,0,0,0,12,22,0.647,34,70,120,0.632,190,18,34,0.654,52,0,0,0,0,0,0,0,0,10,12,0.545,22,19,57,0.75,76,0,0,0,0,40,148,0.787,188,28,59,0.678,87,15,46,0.754,61,6,28,0.824,34,8,27,0.771,35,27,47,0.635,74,15,25,0.625,40,11,42,0.792,53,45,79,0.637,124,15,21,0.583,36,4,24,0.857,28,42,59,0.584,101,41,122,0.748,163,15,20,0.571,35,0,0,0,0,22,58,0.725,80,0,0,0,0,19,27,0.587,46,7,19,0.731,26,27,87,0.763,114,45,73,0.619,118,40,48,0.545,88,24,43,0.642,67,16,43,0.729,59,0,0,0,0,8,18,0.692,26,7,19,0.731,26,6,19,0.76,25,0,0,0,0,12,23,0.657,35,12,28,0.7,40,0,0,0,0,10,22,0.688,32,20,28,0.583,48,32,65,0.67,97,47,67,0.588,114,22,67,0.753,89,53,124,0.701,177,56,96,0.632,152,38,82,0.683,120,14,31,0.689,45,0,0,0,0,25,70,0.737,95,74,72,0.493,146,0,0,0,0,8,22,0.733,30,7,23,0.767,30,13,53,0.803,66,13,25,0.658,38,17,19,0.528,36,22,61,0.735,83,20,30,0.6,50,15,16,0.516,31,0,0,0,0,30,76,0.717,106,36,101,0.737,137,10,23,0.697,33,7,13,0.65,20,48,127,0.726,175,13,21,0.618,34,11,28,0.718,39,6,36,0.857,42,13,34,0.723,47,37,121,0.766,158,7,25,0.781,32,31,126,0.803,157,25,136,0.845,161,97,191,0.663,288,30,61,0.67,91,27,121,0.818,148,13,38,0.745,51,0,0,0,0,33,54,0.621,87,64,104,0.619,168,87,269,0.756,356,71,185,0.723,256,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429940,"A","G","No","LINC01770","lnc_RNA","NA",40,39,0.833,0.867,2124,2670,967,1308,3091,3978,0.257,0.276,0.5099,79,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365320,"NA","NA","NA","[\"FOXA1\", \"FOXA2\", \"KAP1\", \"MYBL2\", \"POLR2A\"]","CTCF_binding_site","ENSR00000344631","regular_and_hyper","+","ADAR",925,0,1.842,"A,R","ALU","downstream",32,22,0.407,54,170,65,0.277,235,71,49,0.408,120,29,8,0.216,37,74,28,0.275,102,95,26,0.215,121,114,59,0.341,173,58,31,0.348,89,0,0,0,0,23,11,0.324,34,150,42,0.219,192,39,14,0.264,53,0,0,0,0,0,0,0,0,17,4,0.19,21,46,33,0.418,79,0,0,0,0,110,76,0.409,186,57,27,0.321,84,38,18,0.321,56,20,14,0.412,34,27,8,0.229,35,58,17,0.227,75,26,14,0.35,40,38,15,0.283,53,83,40,0.325,123,27,6,0.182,33,20,8,0.286,28,75,24,0.242,99,117,44,0.273,161,25,9,0.265,34,0,0,0,0,42,37,0.468,79,0,0,0,0,34,9,0.209,43,14,12,0.462,26,63,50,0.442,113,85,34,0.286,119,62,26,0.295,88,41,25,0.379,66,38,19,0.333,57,0,0,0,0,20,6,0.231,26,19,6,0.24,25,15,8,0.348,23,0,0,0,0,27,9,0.25,36,25,14,0.359,39,0,0,0,0,20,13,0.394,33,38,11,0.224,49,66,33,0.333,99,85,25,0.227,110,51,38,0.427,89,106,66,0.384,172,111,40,0.265,151,84,35,0.294,119,33,13,0.283,46,0,0,0,0,64,28,0.304,92,109,36,0.248,145,0,0,0,0,25,6,0.194,31,20,10,0.333,30,49,17,0.258,66,24,12,0.333,36,32,7,0.179,39,56,25,0.309,81,38,10,0.208,48,25,6,0.194,31,0,0,0,0,71,31,0.304,102,102,32,0.239,134,21,10,0.323,31,0,0,0,0,99,67,0.404,166,27,8,0.229,35,26,12,0.316,38,17,24,0.585,41,38,9,0.191,47,91,67,0.424,158,19,13,0.406,32,88,64,0.421,152,107,50,0.318,157,202,82,0.289,284,60,29,0.326,89,78,67,0.462,145,29,22,0.431,51,0,0,0,0,55,32,0.368,87,120,45,0.273,165,212,134,0.387,346,172,79,0.315,251,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","NA","6.9772e-06","NA","NA","NA","NA","NA","NA"]
["chr1",1429954,"A","G","No","LINC01770","lnc_RNA","NA",41,39,0.854,0.867,12,42,3300,4091,3312,4133,0.852,0.858,0.9278,80,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365334,"NA","NA","NA","[\"FOXA1\", \"FOXA2\", \"KAP1\", \"MYBL2\", \"POLR2A\"]","CTCF_binding_site","ENSR00000344631","regular_and_hyper","+","ADAR",911,0,1.379,"A","ALU","downstream",0,60,1,60,1,223,0.996,224,1,120,0.992,121,0,45,1,45,1,125,0.992,126,1,131,0.992,132,0,205,1,205,2,95,0.979,97,0,0,0,0,0,34,1,34,0,232,1,232,0,46,1,46,0,0,0,0,0,0,0,0,0,22,1,22,0,88,1,88,0,0,0,0,1,184,0.995,185,0,94,1,94,0,70,1,70,0,36,1,36,0,43,1,43,0,76,1,76,0,43,1,43,0,52,1,52,2,125,0.984,127,0,39,1,39,0,24,1,24,0,95,1,95,0,160,1,160,0,38,1,38,0,0,0,0,0,80,1,80,0,0,0,0,0,43,1,43,0,27,1,27,0,119,1,119,1,124,0.992,125,1,98,0.99,99,0,67,1,67,0,61,1,61,0,21,1,21,0,24,1,24,1,27,0.964,28,0,30,1,30,0,0,0,0,0,27,1,27,0,47,1,47,0,0,0,0,1,35,0.972,36,0,56,1,56,0,106,1,106,2,111,0.982,113,0,99,1,99,0,197,1,197,0,185,1,185,1,142,0.993,143,0,51,1,51,0,0,0,0,0,98,1,98,0,143,1,143,0,0,0,0,0,26,1,26,0,33,1,33,10,62,0.861,72,0,32,1,32,0,38,1,38,0,90,1,90,0,48,1,48,0,29,1,29,0,0,0,0,0,107,1,107,2,142,0.986,144,1,35,0.972,36,0,0,0,0,2,182,0.989,184,0,33,1,33,0,32,1,32,0,40,1,40,0,48,1,48,1,155,0.994,156,0,34,1,34,1,155,0.994,156,15,144,0.906,159,2,278,0.993,280,1,92,0.989,93,0,142,1,142,0,47,1,47,0,0,0,0,0,90,1,90,1,165,0.994,166,0,347,1,347,2,242,0.992,244,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","rs1781138",0.986939,"NA","NA","NA","NA","NA","NA"]
["chr1",1429960,"A","G","No","LINC01770","lnc_RNA","NA",38,39,0.792,0.867,1260,1532,1780,2344,3040,3876,0.475,0.515,0.4166,77,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167862;SRR12167867;SRR12167869;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365340,"NA","NA","NA","[\"FOXA1\", \"FOXA2\", \"KAP1\", \"MYBL2\", \"POLR2A\"]","CTCF_binding_site","ENSR00000344631","regular_and_hyper","+","ADAR",905,0,1.95,"A,R","ALU","downstream",19,29,0.604,48,94,121,0.563,215,45,73,0.619,118,17,28,0.622,45,45,76,0.628,121,66,57,0.463,123,77,129,0.626,206,41,54,0.568,95,0,0,0,0,8,18,0.692,26,115,105,0.477,220,12,34,0.739,46,0,0,0,0,0,0,0,0,0,0,0,0,29,55,0.655,84,0,0,0,0,62,105,0.629,167,29,56,0.659,85,37,33,0.471,70,9,24,0.727,33,15,20,0.571,35,39,33,0.458,72,17,21,0.553,38,18,23,0.561,41,43,64,0.598,107,15,23,0.605,38,6,16,0.727,22,44,48,0.522,92,73,86,0.541,159,16,20,0.556,36,0,0,0,0,24,53,0.688,77,0,0,0,0,20,22,0.524,42,11,15,0.577,26,33,83,0.716,116,47,62,0.569,109,43,46,0.517,89,25,39,0.609,64,23,33,0.589,56,0,0,0,0,6,17,0.739,23,11,12,0.522,23,10,21,0.677,31,0,0,0,0,0,0,0,0,16,26,0.619,42,0,0,0,0,12,18,0.6,30,17,31,0.646,48,43,57,0.57,100,47,57,0.548,104,41,54,0.568,95,72,107,0.598,179,71,108,0.603,179,60,74,0.552,134,21,26,0.553,47,0,0,0,0,45,45,0.5,90,71,58,0.45,129,0,0,0,0,13,11,0.458,24,15,14,0.483,29,18,52,0.743,70,11,19,0.633,30,14,20,0.588,34,33,55,0.625,88,19,25,0.568,44,12,13,0.52,25,0,0,0,0,39,61,0.61,100,61,67,0.523,128,13,13,0.5,26,0,0,0,0,79,90,0.533,169,16,13,0.448,29,13,15,0.536,28,4,30,0.882,34,17,29,0.63,46,40,107,0.728,147,11,21,0.656,32,42,104,0.712,146,52,100,0.658,152,111,162,0.593,273,39,53,0.576,92,37,99,0.728,136,17,26,0.605,43,0,0,0,0,34,54,0.614,88,70,87,0.554,157,112,220,0.663,332,90,149,0.623,239,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429961,"A","G","No","LINC01770","lnc_RNA","NA",38,39,0.792,0.867,655,752,2389,3126,3044,3878,0.63,0.703,0.2579,77,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167862;SRR12167867;SRR12167869;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365341,"NA","NA","NA","[\"FOXA1\", \"FOXA2\", \"KAP1\", \"MYBL2\", \"POLR2A\"]","CTCF_binding_site","ENSR00000344631","regular_and_hyper","+","ADAR",904,0,1.95,"A,R","ALU","downstream",9,39,0.812,48,44,174,0.798,218,19,98,0.838,117,13,32,0.711,45,18,103,0.851,121,34,89,0.724,123,42,166,0.798,208,16,79,0.832,95,0,0,0,0,7,19,0.731,26,65,156,0.706,221,3,43,0.935,46,0,0,0,0,0,0,0,0,0,0,0,0,16,68,0.81,84,0,0,0,0,38,128,0.771,166,17,69,0.802,86,20,50,0.714,70,5,27,0.844,32,6,29,0.829,35,17,55,0.764,72,11,27,0.711,38,5,36,0.878,41,22,85,0.794,107,7,31,0.816,38,5,17,0.773,22,27,66,0.71,93,36,121,0.771,157,7,29,0.806,36,0,0,0,0,12,66,0.846,78,0,0,0,0,9,31,0.775,40,4,22,0.846,26,19,97,0.836,116,31,78,0.716,109,21,68,0.764,89,19,46,0.708,65,11,46,0.807,57,0,0,0,0,0,23,1,23,3,20,0.87,23,6,25,0.806,31,0,0,0,0,0,0,0,0,11,31,0.738,42,0,0,0,0,7,23,0.767,30,9,39,0.812,48,23,77,0.77,100,28,75,0.728,103,15,80,0.842,95,36,146,0.802,182,36,143,0.799,179,32,102,0.761,134,10,37,0.787,47,0,0,0,0,24,65,0.73,89,37,92,0.713,129,0,0,0,0,6,18,0.75,24,8,23,0.742,31,9,63,0.875,72,7,23,0.767,30,3,31,0.912,34,23,65,0.739,88,9,35,0.795,44,1,24,0.96,25,0,0,0,0,20,79,0.798,99,34,94,0.734,128,4,22,0.846,26,0,0,0,0,32,137,0.811,169,8,21,0.724,29,2,26,0.929,28,1,34,0.971,35,11,35,0.761,46,15,131,0.897,146,2,30,0.938,32,20,124,0.861,144,29,124,0.81,153,54,219,0.802,273,15,76,0.835,91,22,114,0.838,136,4,39,0.907,43,0,0,0,0,24,64,0.727,88,41,114,0.735,155,51,282,0.847,333,40,200,0.833,240,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429965,"A","G","No","LINC01770","lnc_RNA","NA",37,37,0.771,0.822,2377,3020,636,795,3013,3815,0.169,0.176,0.7383,74,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167862;SRR12167867;SRR12167869;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365345,"NA","NA","NA","[\"FOXA1\", \"KAP1\", \"MYBL2\", \"POLR2A\"]","CTCF_binding_site","ENSR00000344631","regular_and_hyper","+","ADAR",900,0,1.95,"A,R","ALU","downstream",32,14,0.304,46,163,59,0.266,222,93,27,0.225,120,37,11,0.229,48,91,28,0.235,119,106,17,0.138,123,171,39,0.186,210,79,18,0.186,97,0,0,0,0,19,7,0.269,26,193,27,0.123,220,38,6,0.136,44,0,0,0,0,0,0,0,0,0,0,0,0,62,23,0.271,85,0,0,0,0,127,39,0.235,166,69,17,0.198,86,57,13,0.186,70,22,10,0.312,32,0,0,0,0,57,14,0.197,71,31,6,0.162,37,28,12,0.3,40,82,21,0.204,103,27,9,0.25,36,20,3,0.13,23,81,12,0.129,93,132,29,0.18,161,31,6,0.162,37,0,0,0,0,53,27,0.338,80,0,0,0,0,33,7,0.175,40,15,11,0.423,26,82,36,0.305,118,85,24,0.22,109,69,20,0.225,89,54,10,0.156,64,48,9,0.158,57,0,0,0,0,20,3,0.13,23,15,6,0.286,21,22,8,0.267,30,0,0,0,0,0,0,0,0,33,8,0.195,41,0,0,0,0,23,8,0.258,31,37,11,0.229,48,81,19,0.19,100,83,22,0.21,105,83,15,0.153,98,139,40,0.223,179,134,47,0.26,181,117,18,0.133,135,42,5,0.106,47,0,0,0,0,77,13,0.144,90,109,19,0.148,128,0,0,0,0,16,8,0.333,24,0,0,0,0,52,19,0.268,71,28,4,0.125,32,27,7,0.206,34,68,20,0.227,88,0,0,0,0,19,6,0.24,25,0,0,0,0,74,23,0.237,97,98,28,0.222,126,20,5,0.2,25,0,0,0,0,144,25,0.148,169,25,3,0.107,28,21,7,0.25,28,23,11,0.324,34,35,12,0.255,47,100,48,0.324,148,24,10,0.294,34,112,31,0.217,143,118,35,0.229,153,213,58,0.214,271,71,23,0.245,94,106,32,0.232,138,31,11,0.262,42,0,0,0,0,76,15,0.165,91,136,19,0.123,155,268,65,0.195,333,190,53,0.218,243,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429986,"A","G","No","LINC01770","lnc_RNA","NA",36,39,0.75,0.867,2260,2750,627,903,2887,3653,0.169,0.222,0.038,75,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365366,"NA","NA","NA","[\"FOXA1\", \"KAP1\", \"MYBL2\", \"POLR2A\"]","CTCF_binding_site","ENSR00000344631","regular_and_hyper","+","ADAR",879,0,1.842,"A,R","ALU","downstream",32,9,0.22,41,175,37,0.175,212,87,24,0.216,111,37,6,0.14,43,82,29,0.261,111,104,13,0.111,117,146,50,0.255,196,78,19,0.196,97,0,0,0,0,15,6,0.286,21,182,34,0.157,216,33,6,0.154,39,0,0,0,0,0,0,0,0,0,0,0,0,56,30,0.349,86,0,0,0,0,110,52,0.321,162,57,20,0.26,77,51,11,0.177,62,31,7,0.184,38,23,9,0.281,32,67,8,0.107,75,29,9,0.237,38,32,10,0.238,42,91,14,0.133,105,26,8,0.235,34,0,0,0,0,71,12,0.145,83,114,33,0.224,147,27,10,0.27,37,0,0,0,0,49,26,0.347,75,0,0,0,0,29,6,0.171,35,18,8,0.308,26,60,44,0.423,104,94,17,0.153,111,83,13,0.135,96,51,10,0.164,61,47,11,0.19,58,0,0,0,0,0,0,0,0,13,9,0.409,22,23,10,0.303,33,0,0,0,0,0,0,0,0,37,7,0.159,44,0,0,0,0,19,7,0.269,26,29,16,0.356,45,68,25,0.269,93,90,19,0.174,109,71,19,0.211,90,130,41,0.24,171,119,44,0.27,163,116,19,0.141,135,34,12,0.261,46,0,0,0,0,69,18,0.207,87,97,16,0.142,113,0,0,0,0,16,10,0.385,26,19,7,0.269,26,45,17,0.274,62,28,10,0.263,38,27,5,0.156,32,67,18,0.212,85,39,6,0.133,45,20,3,0.13,23,0,0,0,0,62,29,0.319,91,93,20,0.177,113,17,11,0.393,28,0,0,0,0,131,31,0.191,162,25,7,0.219,32,27,8,0.229,35,15,19,0.559,34,36,6,0.143,42,82,58,0.414,140,18,13,0.419,31,87,50,0.365,137,101,40,0.284,141,189,51,0.212,240,65,23,0.261,88,88,36,0.29,124,26,10,0.278,36,0,0,0,0,67,17,0.202,84,120,22,0.155,142,225,85,0.274,310,173,55,0.241,228,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1429987,"A","G","No","LINC01770","lnc_RNA","NA",33,36,0.688,0.8,2304,2854,504,719,2808,3573,0.125,0.167,0.0351,69,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167869;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365367,"NA","NA","NA","[\"FOXA1\", \"KAP1\", \"MYBL2\", \"POLR2A\"]","CTCF_binding_site","ENSR00000344631","regular_and_hyper","+","ADAR",878,0,1.842,"A,R","ALU","downstream",35,7,0.167,42,174,39,0.183,213,96,15,0.135,111,34,8,0.19,42,91,21,0.188,112,99,18,0.154,117,165,30,0.154,195,79,18,0.186,97,0,0,0,0,17,4,0.19,21,187,28,0.13,215,29,10,0.256,39,0,0,0,0,0,0,0,0,0,0,0,0,65,20,0.235,85,0,0,0,0,120,42,0.259,162,64,11,0.147,75,53,9,0.145,62,25,13,0.342,38,25,7,0.219,32,66,8,0.108,74,32,7,0.179,39,37,5,0.119,42,89,17,0.16,106,28,6,0.176,34,0,0,0,0,72,12,0.143,84,115,33,0.223,148,0,0,0,0,0,0,0,0,65,13,0.167,78,0,0,0,0,27,8,0.229,35,0,0,0,0,79,25,0.24,104,90,22,0.196,112,76,21,0.216,97,53,8,0.131,61,50,8,0.138,58,0,0,0,0,0,0,0,0,0,0,0,0,28,5,0.152,33,0,0,0,0,0,0,0,0,39,6,0.133,45,0,0,0,0,19,7,0.269,26,33,12,0.267,45,83,10,0.108,93,94,17,0.153,111,74,16,0.178,90,135,36,0.211,171,142,19,0.118,161,107,27,0.201,134,37,9,0.196,46,0,0,0,0,72,14,0.163,86,93,19,0.17,112,0,0,0,0,17,9,0.346,26,21,6,0.222,27,48,14,0.226,62,31,8,0.205,39,23,8,0.258,31,68,17,0.2,85,34,11,0.244,45,0,0,0,0,0,0,0,0,80,13,0.14,93,91,22,0.195,113,25,3,0.107,28,0,0,0,0,135,27,0.167,162,25,7,0.219,32,0,0,0,0,24,10,0.294,34,31,11,0.262,42,116,24,0.171,140,0,0,0,0,103,34,0.248,137,108,34,0.239,142,192,49,0.203,241,66,21,0.241,87,91,34,0.272,125,28,8,0.222,36,0,0,0,0,68,17,0.2,85,124,20,0.139,144,246,66,0.212,312,170,60,0.261,230,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","NA","2.09407e-05","NA","NA","NA","NA","NA","NA"]
["chr1",1429990,"A","G","No","LINC01770","lnc_RNA","NA",37,39,0.771,0.867,2081,2578,801,1066,2882,3644,0.216,0.259,0.1331,76,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365370,"NA","NA","NA","[\"FOXA1\", \"KAP1\", \"MYBL2\", \"POLR2A\"]","CTCF_binding_site","ENSR00000344631","regular_and_hyper","+","ADAR",875,0,1.95,"A,R","ALU","downstream",32,10,0.238,42,165,51,0.236,216,79,37,0.319,116,34,11,0.244,45,87,21,0.194,108,84,24,0.222,108,110,71,0.392,181,71,21,0.228,92,0,0,0,0,16,4,0.2,20,170,37,0.179,207,30,10,0.25,40,0,0,0,0,0,0,0,0,0,0,0,0,58,25,0.301,83,0,0,0,0,105,55,0.344,160,47,27,0.365,74,45,17,0.274,62,21,18,0.462,39,19,10,0.345,29,52,17,0.246,69,29,10,0.256,39,31,8,0.205,39,79,27,0.255,106,30,5,0.143,35,13,7,0.35,20,63,23,0.267,86,121,29,0.193,150,29,7,0.194,36,0,0,0,0,48,34,0.415,82,0,0,0,0,32,5,0.135,37,16,12,0.429,28,63,43,0.406,106,76,33,0.303,109,66,29,0.305,95,49,13,0.21,62,42,18,0.3,60,0,0,0,0,0,0,0,0,17,6,0.261,23,19,13,0.406,32,0,0,0,0,0,0,0,0,33,13,0.283,46,0,0,0,0,16,9,0.36,25,34,9,0.209,43,63,29,0.315,92,90,21,0.189,111,51,36,0.414,87,118,47,0.285,165,115,42,0.268,157,94,36,0.277,130,31,10,0.244,41,0,0,0,0,68,20,0.227,88,95,15,0.136,110,0,0,0,0,16,10,0.385,26,20,6,0.231,26,37,23,0.383,60,31,12,0.279,43,23,8,0.258,31,50,27,0.351,77,31,13,0.295,44,14,7,0.333,21,0,0,0,0,69,23,0.25,92,84,26,0.236,110,15,10,0.4,25,0,0,0,0,112,55,0.329,167,24,8,0.25,32,27,4,0.129,31,15,19,0.559,34,31,11,0.262,42,83,54,0.394,137,15,18,0.545,33,82,56,0.406,138,96,48,0.333,144,172,72,0.295,244,65,22,0.253,87,84,39,0.317,123,30,8,0.211,38,0,0,0,0,67,22,0.247,89,116,29,0.2,145,224,91,0.289,315,170,71,0.295,241,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1430000,"A","G","No","LINC01770","lnc_RNA","NA",38,39,0.792,0.867,1699,1927,1163,1644,2862,3571,0.334,0.399,0.1106,77,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365380,"NA","NA","NA","[\"FOXA1\", \"KAP1\", \"MYBL2\", \"POLR2A\"]","CTCF_binding_site","ENSR00000344631","regular_and_hyper","+","ADAR",865,0,1.842,"A,R","ALU","downstream",22,26,0.542,48,135,77,0.363,212,69,45,0.395,114,32,13,0.289,45,59,37,0.385,96,78,24,0.235,102,82,85,0.509,167,52,37,0.416,89,0,0,0,0,13,8,0.381,21,158,45,0.222,203,28,16,0.364,44,0,0,0,0,0,0,0,0,0,0,0,0,36,42,0.538,78,0,0,0,0,76,82,0.519,158,31,37,0.544,68,40,18,0.31,58,16,24,0.6,40,16,17,0.515,33,54,12,0.182,66,17,20,0.541,37,27,17,0.386,44,74,40,0.351,114,23,13,0.361,36,0,0,0,0,62,25,0.287,87,84,57,0.404,141,23,14,0.378,37,0,0,0,0,38,43,0.531,81,0,0,0,0,25,11,0.306,36,9,21,0.7,30,35,68,0.66,103,66,46,0.411,112,62,34,0.354,96,45,17,0.274,62,33,25,0.431,58,0,0,0,0,11,9,0.45,20,14,12,0.462,26,7,21,0.75,28,0,0,0,0,15,7,0.318,22,32,18,0.36,50,0,0,0,0,12,13,0.52,25,23,24,0.511,47,50,46,0.479,96,78,40,0.339,118,59,28,0.322,87,80,77,0.49,157,91,66,0.42,157,69,56,0.448,125,16,23,0.59,39,0,0,0,0,52,34,0.395,86,63,42,0.4,105,0,0,0,0,11,16,0.593,27,16,9,0.36,25,22,37,0.627,59,22,20,0.476,42,19,14,0.424,33,45,32,0.416,77,29,18,0.383,47,14,6,0.3,20,0,0,0,0,48,39,0.448,87,59,49,0.454,108,16,9,0.36,25,0,0,0,0,95,73,0.435,168,20,13,0.394,33,19,12,0.387,31,9,24,0.727,33,22,18,0.45,40,48,89,0.65,137,16,16,0.5,32,58,75,0.564,133,69,68,0.496,137,125,109,0.466,234,43,42,0.494,85,62,52,0.456,114,21,16,0.432,37,0,0,0,0,44,40,0.476,84,89,48,0.35,137,165,144,0.466,309,128,107,0.455,235,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","rs1295248739","6.98002e-06","NA","NA","NA","NA","NA","NA"]
["chr1",1430015,"A","G","No","LINC01770","lnc_RNA","NA",23,26,0.479,0.578,1638,2086,272,379,1910,2465,0.071,0.092,0.2358,49,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166187;SRR12166190;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166510;SRR12166775;SRR12166823;SRR12167141;SRR12167145;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167511;SRR12167867;SRR12167869;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166740;SRR12166748;SRR12166832;SRR12166912;SRR12166967;SRR12166978;SRR12167015;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365395,"NA","NA","NA","[\"KAP1\", \"MYBL2\", \"POLR2A\"]","CTCF_binding_site","ENSR00000344631","hyper","+","ADAR",850,0,0.863,"A,R","ALU","downstream",42,6,0.125,48,167,26,0.135,193,88,14,0.137,102,33,5,0.132,38,67,11,0.141,78,0,0,0,0,126,17,0.119,143,69,13,0.159,82,0,0,0,0,0,0,0,0,175,20,0.103,195,37,5,0.119,42,0,0,0,0,0,0,0,0,0,0,0,0,58,12,0.171,70,0,0,0,0,127,23,0.153,150,0,0,0,0,0,0,0,0,36,6,0.143,42,0,0,0,0,0,0,0,0,0,0,0,0,38,9,0.191,47,106,13,0.109,119,0,0,0,0,0,0,0,0,65,9,0.122,74,102,15,0.128,117,0,0,0,0,0,0,0,0,57,12,0.174,69,0,0,0,0,28,4,0.125,32,21,6,0.222,27,73,26,0.263,99,0,0,0,0,78,11,0.124,89,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23,4,0.148,27,22,5,0.185,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24,3,0.111,27,46,6,0.115,52,72,13,0.153,85,86,14,0.14,100,69,9,0.115,78,115,18,0.135,133,123,24,0.163,147,104,16,0.133,120,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23,5,0.179,28,0,0,0,0,47,7,0.13,54,0,0,0,0,25,6,0.194,31,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,65,15,0.188,80,0,0,0,0,22,7,0.241,29,0,0,0,0,141,22,0.135,163,0,0,0,0,0,0,0,0,30,10,0.25,40,0,0,0,0,109,19,0.148,128,25,6,0.194,31,97,23,0.192,120,103,21,0.169,124,0,0,0,0,58,16,0.216,74,87,11,0.112,98,34,5,0.128,39,0,0,0,0,63,11,0.149,74,106,14,0.117,120,234,41,0.149,275,178,37,0.172,215,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","NA","6.98519e-06","NA","NA","NA","NA","NA","NA"]
["chr1",1430058,"A","G","No","LINC01770","lnc_RNA","NA",35,37,0.729,0.822,730,795,1344,1604,2074,2399,0.459,0.551,0.1253,72,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167869;SRR12167875;SRR12167879;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365438,"NA","NA","NA","[\"KAP1\", \"MYBL2\", \"NFIC\"]","CTCF_binding_site","ENSR00000344631","regular_and_hyper","+","ADAR",807,0,1.842,"A,R,D","ALU","downstream",15,35,0.7,50,47,88,0.652,135,25,56,0.691,81,17,15,0.469,32,16,42,0.724,58,32,55,0.632,87,29,70,0.707,99,23,41,0.641,64,0,0,0,0,9,21,0.7,30,65,73,0.529,138,14,15,0.517,29,0,0,0,0,0,0,0,0,0,0,0,0,10,43,0.811,53,0,0,0,0,38,120,0.759,158,10,43,0.811,53,19,22,0.537,41,7,25,0.781,32,15,12,0.444,27,28,26,0.481,54,10,23,0.697,33,20,36,0.643,56,44,80,0.645,124,8,17,0.68,25,0,0,0,0,23,23,0.5,46,33,64,0.66,97,17,9,0.346,26,0,0,0,0,16,33,0.673,49,0,0,0,0,12,9,0.429,21,0,0,0,0,10,59,0.855,69,23,56,0.709,79,28,35,0.556,63,22,17,0.436,39,10,15,0.6,25,0,0,0,0,0,0,0,0,0,0,0,0,4,22,0.846,26,0,0,0,0,17,21,0.553,38,14,23,0.622,37,0,0,0,0,0,0,0,0,15,34,0.694,49,24,31,0.564,55,32,49,0.605,81,16,36,0.692,52,31,60,0.659,91,33,64,0.66,97,31,49,0.613,80,0,0,0,0,0,0,0,0,26,25,0.49,51,32,44,0.579,76,0,0,0,0,10,18,0.643,28,6,19,0.76,25,13,40,0.755,53,10,29,0.744,39,14,17,0.548,31,19,36,0.655,55,14,21,0.6,35,7,16,0.696,23,0,0,0,0,27,48,0.64,75,23,74,0.763,97,0,0,0,0,6,17,0.739,23,43,87,0.669,130,11,22,0.667,33,13,22,0.629,35,5,35,0.875,40,6,15,0.714,21,19,62,0.765,81,5,17,0.773,22,15,63,0.808,78,23,47,0.671,70,56,95,0.629,151,18,41,0.695,59,30,45,0.6,75,12,25,0.676,37,0,0,0,0,22,25,0.532,47,32,47,0.595,79,56,134,0.705,190,40,95,0.704,135,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",1430086,"A","G","No","LINC01770","lnc_RNA","NA",37,38,0.771,0.844,479,475,1838,2208,2317,2683,0.61,0.692,0.2284,75,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",1365466,"NA","NA","NA","[\"KAP1\", \"MYBL2\", \"NFIC\"]","CTCF_binding_site","ENSR00000344631","regular_and_hyper","+","ADAR",779,0,1.842,"A,R,D","ALU","downstream",11,47,0.81,58,33,116,0.779,149,23,70,0.753,93,8,19,0.704,27,15,56,0.789,71,19,81,0.81,100,21,93,0.816,114,13,59,0.819,72,0,0,0,0,2,35,0.946,37,31,134,0.812,165,5,35,0.875,40,0,0,0,0,0,0,0,0,0,0,0,0,15,42,0.737,57,0,0,0,0,28,136,0.829,164,8,49,0.86,57,11,36,0.766,47,4,26,0.867,30,8,22,0.733,30,23,34,0.596,57,4,25,0.862,29,19,40,0.678,59,31,83,0.728,114,6,20,0.769,26,4,18,0.818,22,14,46,0.767,60,20,91,0.82,111,13,17,0.567,30,0,0,0,0,9,36,0.8,45,0,0,0,0,3,26,0.897,29,0,0,0,0,3,68,0.958,71,21,62,0.747,83,15,57,0.792,72,5,38,0.884,43,6,22,0.786,28,0,0,0,0,0,0,0,0,5,16,0.762,21,5,21,0.808,26,0,0,0,0,11,36,0.766,47,7,26,0.788,33,0,0,0,0,0,0,0,0,12,39,0.765,51,7,55,0.887,62,17,62,0.785,79,13,46,0.78,59,22,84,0.792,106,13,89,0.873,102,17,80,0.825,97,0,0,0,0,0,0,0,0,12,48,0.8,60,19,69,0.784,88,0,0,0,0,5,18,0.783,23,2,29,0.935,31,9,43,0.827,52,7,25,0.781,32,11,22,0.667,33,12,47,0.797,59,6,33,0.846,39,5,19,0.792,24,0,0,0,0,19,56,0.747,75,21,100,0.826,121,2,18,0.9,20,2,18,0.9,20,21,114,0.844,135,3,24,0.889,27,8,19,0.704,27,3,41,0.932,44,4,19,0.826,23,13,75,0.852,88,3,19,0.864,22,11,86,0.887,97,13,63,0.829,76,30,152,0.835,182,10,63,0.863,73,18,65,0.783,83,9,27,0.75,36,0,0,0,0,13,35,0.729,48,21,85,0.802,106,35,190,0.844,225,27,131,0.829,158,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",10382491,"A","G","No","KIF1B","2kb_downstream_variant","NA",26,15,0.542,0.333,568,297,163,96,731,393,0.122,0.082,0.1247,41,"SRR12165859;SRR12166108;SRR12166184;SRR12166221;SRR12166459;SRR12166494;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166310;SRR12166321;SRR12166783;SRR12166832;SRR12166971;SRR12166978;SRR12167015;SRR12167206;SRR12167279;SRR12167304;SRR12167395;SRR12167407;SRR12167468","chr1",10442549,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",576,0,1.842,"A,R","ALU","ncRNA_exonic",24,6,0.2,30,0,0,0,0,17,3,0.15,20,0,0,0,0,16,6,0.273,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,6,0.261,23,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28,11,0.282,39,0,0,0,0,15,5,0.25,20,0,0,0,0,0,0,0,0,32,4,0.111,36,21,4,0.16,25,22,4,0.154,26,31,9,0.225,40,25,5,0.167,30,16,5,0.238,21,36,4,0.1,40,30,10,0.25,40,0,0,0,0,0,0,0,0,14,8,0.364,22,0,0,0,0,0,0,0,0,27,9,0.25,36,24,12,0.333,36,23,7,0.233,30,19,4,0.174,23,19,5,0.208,24,22,4,0.154,26,0,0,0,0,0,0,0,0,18,6,0.25,24,21,6,0.222,27,14,6,0.3,20,19,4,0.174,23,18,10,0.357,28,0,0,0,0,23,4,0.148,27,0,0,0,0,16,8,0.333,24,0,0,0,0,0,0,0,0,16,7,0.304,23,25,4,0.138,29,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25,11,0.306,36,17,3,0.15,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,6,0.3,20,17,9,0.346,26,0,0,0,0,0,0,0,0,21,6,0.222,27,0,0,0,0,15,5,0.25,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,7,0.259,27,0,0,0,0,16,6,0.273,22,0,0,0,0,16,6,0.273,22,0,0,0,0,35,10,0.222,45,21,4,0.16,25,"HP:0002460;HP:0008629;HP:0003745;HP:0025269;HP:0001293;HP:0001284;HP:0001251;HP:0001265;HP:0002574;HP:0003829;HP:0000096;HP:0000093;HP:0033823;HP:0001342;HP:0002668;HP:0001337;HP:0000006;HP:0000006;HP:0001336;HP:0002640;HP:0002653;HP:0031284;HP:0001442;HP:0002018;HP:0002027;HP:0003345;HP:0002014;HP:0003378;HP:0003376;HP:0003383;HP:0003384;HP:0003380;HP:0011703;HP:0003477;HP:0003431;HP:0002176;HP:0010543;HP:0010532;HP:0003596;HP:0002277;HP:0003574;HP:0003528;HP:0009711;HP:0100749;HP:0011979;HP:0011979;HP:0011976;HP:0011977;HP:0011978;HP:0010628;HP:0001069;HP:0003693;HP:0003690;HP:0003677;HP:0002331;HP:0200036;HP:0009830;HP:0001095;HP:0003639;HP:0005584;HP:0001962;HP:0001945;HP:0001903;HP:0009027;HP:0003005;HP:0003072;HP:0003006;HP:0000740;HP:0000790;HP:0000822;HP:0000980;HP:0012222;HP:0002864;HP:0001508;HP:0031500;HP:0012378;HP:0002936;HP:0001605;HP:0001618;HP:0001635;HP:0000405;HP:0001765;HP:0001761;HP:0006747;HP:0006748;HP:0006737;HP:0011281;HP:0000526;HP:0001824;HP:0001824","Distal muscle weakness;Pulsatile tinnitus;Sporadic;Panic attack;Cranial nerve compression;Areflexia;Ataxia;Hyporeflexia;Episodic abdominal pain;Typified by incomplete penetrance;Glomerular sclerosis;Proteinuria;Mediastinal mass;Cerebral hemorrhage;Paraganglioma;Tremor;Autosomal dominant inheritance;Autosomal dominant inheritance;Myoclonus;Hypertension associated with pheochromocytoma;Bone pain;Flushing;Typified by somatic mosaicism;Nausea;Abdominal pain;Elevated urinary norepinephrine level;Diarrhea;Axonal degeneration/regeneration;Steppage gait;Onion bulb formation;Peripheral axonal atrophy;Decreased number of peripheral myelinated nerve fibers;Sinus tachycardia;Peripheral axonal neuropathy;Decreased motor nerve conduction velocity;Spinal cord compression;Opsoclonus;Paroxysmal vertigo;Middle age onset;Horner syndrome;Positive regitine blocking test;Elevated circulating calcitonin concentration;Retinal capillary hemangioma;Chest pain;Elevated urinary dopamine level;Elevated urinary dopamine level;Elevated urinary catecholamine level;Elevated urinary homovanillic acid;Elevated urinary vanillylmandelic acid;Facial palsy;Episodic hyperhidrosis;Distal amyotrophy;Limb muscle weakness;Slowly progressive;Recurrent paroxysmal headache;Skin nodule;Peripheral neuropathy;Hypertensive retinopathy;Elevated urinary epinephrine level;Renal cell carcinoma;Palpitations;Fever;Anemia;Foot dorsiflexor weakness;Ganglioneuroma;Hypercalcemia;Neuroblastoma;Episodic paroxysmal anxiety;Hematuria;Hypertension;Pallor;Arachnoid hemangiomatosis;Paraganglioma of head and neck;Failure to thrive;Abdominal mass;Fatigue;Distal sensory impairment;Vocal cord paralysis;Dysphonia;Congestive heart failure;Conductive hearing impairment;Hammertoe;Pes cavus;Ganglioneuroblastoma;Adrenal pheochromocytoma;Extraadrenal pheochromocytoma;Abnormality of urine catecholamine level;Aniridia;Weight loss;Weight loss","Predicted to enable microtubule binding activity and plus-end-directed microtubule motor activity. Predicted to be involved in chemical synaptic transmission; dense core granule cytoskeletal transport; and vesicle-mediated transport. Predicted to act upstream of or within mitochondrion transport along microtubule. Predicted to be located in cytoplasmic vesicle membrane and neuron projection. Predicted to be part of kinesin complex. Predicted to be active in several cellular components, including axon; dendrite; and microtubule. Implicated in Charcot-Marie-Tooth disease type 2A1; carcinoma (multiple); multiple sclerosis; neuroblastoma; and pheochromocytoma. Biomarker of hepatocellular carcinoma. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSq2","NA","7.00948e-06","NA","NA","NA","NA","NA","NA"]
["chr1",113716631,"T","C","No","PHTF1","intron_variant","NA",28,16,0.583,0.356,324,180,492,241,816,421,0.355,0.203,0.0172,44,"SRR12165859;SRR12166187;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166464;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167207;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166321;SRR12166331;SRR12166346;SRR12166736;SRR12166783;SRR12166904;SRR12166912;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167279;SRR12167304;SRR12167407","chr1",114259253,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",73589,0,1.842,"A,R,D","ALU","intronic",10,19,0.655,29,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7,14,0.667,21,0,0,0,0,0,0,0,0,0,0,0,0,18,22,0.55,40,2,19,0.905,21,0,0,0,0,0,0,0,0,0,0,0,0,11,16,0.593,27,14,15,0.517,29,0,0,0,0,15,15,0.5,30,0,0,0,0,10,16,0.615,26,14,9,0.391,23,13,22,0.629,35,17,27,0.614,44,14,17,0.548,31,14,20,0.588,34,21,32,0.604,53,7,13,0.65,20,0,0,0,0,0,0,0,0,13,13,0.5,26,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10,17,0.63,27,7,14,0.667,21,17,24,0.585,41,16,20,0.556,36,8,15,0.652,23,0,0,0,0,16,6,0.273,22,8,20,0.714,28,7,14,0.667,21,9,19,0.679,28,2,19,0.905,21,10,17,0.63,27,14,18,0.562,32,0,0,0,0,14,19,0.576,33,0,0,0,0,13,16,0.552,29,0,0,0,0,0,0,0,0,0,0,0,0,17,15,0.469,32,15,26,0.634,41,6,14,0.7,20,0,0,0,0,0,0,0,0,0,0,0,0,9,19,0.679,28,0,0,0,0,0,0,0,0,0,0,0,0,15,15,0.5,30,0,0,0,0,0,0,0,0,0,0,0,0,13,11,0.458,24,0,0,0,0,10,12,0.545,22,0,0,0,0,6,14,0.7,20,10,10,0.5,20,13,17,0.567,30,9,19,0.679,28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7,13,0.65,20,0,0,0,0,13,8,0.381,21,0,0,0,0,0,0,0,0,0,0,0,0,10,13,0.565,23,0,0,0,0,"NA","NA","Predicted to be located in cis-Golgi network and endoplasmic reticulum membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluJr","rs1293388405","2.79189e-05","NA","NA","NA","NA","NA","NA"]
["chr1",156404823,"T","C","No","C1orf61","intron_variant","NA",25,13,0.521,0.289,706,296,177,85,883,381,0.105,0.063,0.0738,38,"SRR12165859;SRR12166108;SRR12166184;SRR12166185;SRR12166192;SRR12166221;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167397;SRR12167499;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12165792;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166321;SRR12166331;SRR12166783;SRR12167304;SRR12167395;SRR12167407;SRR12167468","chr1",156374615,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",5655,0,1.449,"A,R","ALU","intronic",27,13,0.325,40,0,0,0,0,20,3,0.13,23,0,0,0,0,20,6,0.231,26,16,4,0.2,20,0,0,0,0,0,0,0,0,19,4,0.174,23,13,9,0.409,22,0,0,0,0,24,4,0.143,28,0,0,0,0,0,0,0,0,0,0,0,0,21,8,0.276,29,0,0,0,0,22,4,0.154,26,19,4,0.174,23,0,0,0,0,20,3,0.13,23,0,0,0,0,18,5,0.217,23,40,17,0.298,57,52,11,0.175,63,53,16,0.232,69,38,6,0.136,44,19,7,0.269,26,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,4,0.19,21,27,6,0.182,33,0,0,0,0,52,8,0.133,60,53,14,0.209,67,28,4,0.125,32,22,7,0.241,29,31,6,0.162,37,35,4,0.103,39,0,0,0,0,0,0,0,0,0,0,0,0,22,5,0.185,27,21,4,0.16,25,18,2,0.1,20,25,9,0.265,34,16,7,0.304,23,27,10,0.27,37,0,0,0,0,29,12,0.293,41,34,10,0.227,44,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30,7,0.189,37,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21,3,0.125,24,0,0,0,0,20,5,0.2,25,0,0,0,0,20,4,0.167,24,13,7,0.35,20,"NA","NA","NA","NA","NA","SINE","Alu","AluSz","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr1",225491233,"T","C","No","ENAH","3_prime_UTR_variant","NA",30,21,0.625,0.467,602,467,285,253,887,720,0.198,0.164,0.3631,51,"SRR12166096;SRR12166108;SRR12166110;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167867;SRR12167869;SRR12167879;SRR12166237;SRR12166310;SRR12166321;SRR12166346;SRR12166659;SRR12166748;SRR12166978;SRR12167002;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr1",225678935,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",99932,0,1.95,"A,R","ALU","UTR3",0,0,0,0,45,15,0.25,60,30,14,0.318,44,33,17,0.34,50,0,0,0,0,18,3,0.143,21,20,10,0.333,30,16,7,0.304,23,0,0,0,0,18,2,0.1,20,0,0,0,0,13,8,0.381,21,0,0,0,0,0,0,0,0,0,0,0,0,12,8,0.4,20,0,0,0,0,22,10,0.312,32,15,8,0.348,23,18,18,0.5,36,27,7,0.206,34,0,0,0,0,17,11,0.393,28,0,0,0,0,23,9,0.281,32,18,5,0.217,23,20,8,0.286,28,15,15,0.5,30,19,6,0.24,25,24,15,0.385,39,22,13,0.371,35,0,0,0,0,0,0,0,0,0,0,0,0,16,8,0.333,24,23,15,0.395,38,16,5,0.238,21,15,11,0.423,26,14,7,0.333,21,20,11,0.355,31,0,0,0,0,0,0,0,0,0,0,0,0,20,7,0.259,27,14,6,0.3,20,0,0,0,0,0,0,0,0,19,6,0.24,25,0,0,0,0,0,0,0,0,0,0,0,0,10,14,0.583,24,0,0,0,0,0,0,0,0,13,8,0.381,21,20,11,0.355,31,0,0,0,0,17,5,0.227,22,0,0,0,0,23,14,0.378,37,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,9,0.346,26,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13,8,0.381,21,14,7,0.333,21,0,0,0,0,0,0,0,0,16,6,0.273,22,19,16,0.457,35,26,13,0.333,39,20,17,0.459,37,21,8,0.276,29,24,18,0.429,42,29,26,0.473,55,18,6,0.25,24,29,9,0.237,38,0,0,0,0,25,13,0.342,38,17,7,0.292,24,50,13,0.206,63,46,25,0.352,71,"NA","NA","This gene encodes a member of the enabled/ vasodilator-stimulated phosphoprotein. Members of this gene family are involved in actin-based motility. This protein is involved in regulating the assembly of actin filaments and modulates cell adhesion and motility. Alternate splice variants of this gene have been correlated with tumor invasiveness in certain tissues and these variants may serve as prognostic markers. A pseudogene of this gene is found on chromosome 3. [provided by RefSeq, Sep 2016]","NA","NA","SINE","Alu","AluSx1","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr2",50912451,"T","C","No","NRXN1","intron_variant","NA",30,41,0.625,0.911,884,1137,270,432,1154,1569,0.144,0.246,0.0001,71,"SRR12165859;SRR12166184;SRR12166185;SRR12166190;SRR12166221;SRR12166290;SRR12166405;SRR12166435;SRR12166444;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166823;SRR12167000;SRR12167145;SRR12167207;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167727;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr2",51139589,"NA","NA","NA","NA","NA","NA","hyper","-","ADAR",237374,0,1.557,"A","REP","intronic",27,15,0.357,42,0,0,0,0,0,0,0,0,0,0,0,0,21,7,0.25,28,24,6,0.2,30,0,0,0,0,17,6,0.261,23,0,0,0,0,21,8,0.276,29,0,0,0,0,20,7,0.259,27,0,0,0,0,0,0,0,0,19,3,0.136,22,37,8,0.178,45,18,2,0.1,20,0,0,0,0,0,0,0,0,25,3,0.107,28,49,8,0.14,57,36,9,0.2,45,30,7,0.189,37,33,15,0.312,48,0,0,0,0,47,12,0.203,59,81,25,0.236,106,0,0,0,0,0,0,0,0,32,4,0.111,36,48,14,0.226,62,0,0,0,0,0,0,0,0,0,0,0,0,21,5,0.192,26,33,21,0.389,54,39,14,0.264,53,25,15,0.375,40,35,5,0.125,40,0,0,0,0,15,9,0.375,24,0,0,0,0,32,5,0.135,37,15,9,0.375,24,18,3,0.143,21,14,6,0.3,20,26,16,0.381,42,26,3,0.103,29,0,0,0,0,41,16,0.281,57,0,0,0,0,40,14,0.259,54,32,11,0.256,43,27,13,0.325,40,31,9,0.225,40,38,15,0.283,53,40,14,0.259,54,27,7,0.206,34,23,7,0.233,30,58,21,0.266,79,27,5,0.156,32,19,5,0.208,24,20,9,0.31,29,27,11,0.289,38,0,0,0,0,25,19,0.432,44,18,12,0.4,30,18,5,0.217,23,21,4,0.16,25,22,8,0.267,30,15,6,0.286,21,24,7,0.226,31,23,6,0.207,29,26,12,0.316,38,12,9,0.429,21,39,9,0.188,48,30,12,0.286,42,27,15,0.357,42,18,6,0.25,24,34,8,0.19,42,17,8,0.32,25,32,26,0.448,58,29,7,0.194,36,31,6,0.162,37,21,4,0.16,25,24,13,0.351,37,23,17,0.425,40,31,12,0.279,43,0,0,0,0,28,18,0.391,46,31,16,0.34,47,38,6,0.136,44,30,4,0.118,34,"HP:0010864;HP:0001290;HP:0001252;HP:0000007;HP:0002650;HP:0000154;HP:0002020;HP:0002019;HP:0002136;HP:0200134;HP:0011968;HP:0002376;HP:0010808;HP:0002307;HP:0002883;HP:0001642;HP:0000486","Intellectual disability, severe;Generalized hypotonia;Hypotonia;Autosomal recessive inheritance;Scoliosis;Wide mouth;Gastroesophageal reflux;Constipation;Broad-based gait;Epileptic encephalopathy;Feeding difficulties;Developmental regression;Protruding tongue;Drooling;Hyperventilation;Pulmonic stenosis;Strabismus","This gene encodes a single-pass type I membrane protein that belongs to the neurexin family. Neurexins are cell-surface receptors that bind neuroligins to form Ca(2+)-dependent neurexin/neuroligin complexes at synapses in the central nervous system. This complex is required for efficient neurotransmission and is involved in the formation of synaptic contacts. Three members of this gene family have been studied in detail and are estimated to generate over 3,000 variants through the use of two alternative promoters (alpha and beta) and extensive alternative splicing in each family member. Recently, a third promoter (gamma) was identified for this gene in the 3&apos; region. Mutations in this gene are associated with Pitt-Hopkins-like syndrome-2 and may contribute to susceptibility to schizophrenia. [provided by RefSeq, Aug 2016]","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr2",77434954,"T","C","No","LRRTM4","intron_variant","NA",38,38,0.792,0.844,46,61,1274,1477,1320,1538,0.76,0.813,0.5019,76,"SRR12165859;SRR12166096;SRR12166184;SRR12166187;SRR12166190;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166464;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166904;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr2",77662080,"NA","NA","NA","[\"CTCF\"]","CTCF_binding_site","ENSR00000610785","hyper","-","ADAR",198804,0,1.95,"A","NONREP","intronic",1,35,0.972,36,5,20,0.8,25,0,0,0,0,0,0,0,0,0,27,1,27,0,0,0,0,2,24,0.923,26,2,24,0.923,26,1,24,0.96,25,1,31,0.969,32,0,33,1,33,0,33,1,33,0,0,0,0,0,0,0,0,0,0,0,0,0,22,1,22,2,19,0.905,21,0,0,0,0,3,24,0.889,27,0,0,0,0,1,63,0.984,64,0,50,1,50,1,22,0.957,23,1,47,0.979,48,2,25,0.926,27,1,38,0.974,39,2,75,0.974,77,3,26,0.897,29,0,20,1,20,2,24,0.923,26,1,64,0.985,65,2,36,0.947,38,0,0,0,0,0,0,0,0,4,33,0.892,37,2,44,0.957,46,1,56,0.982,57,0,53,1,53,0,42,1,42,0,30,1,30,1,26,0.963,27,1,19,0.95,20,1,25,0.962,26,0,29,1,29,1,27,0.964,28,0,21,1,21,0,28,1,28,2,35,0.946,37,0,0,0,0,0,47,1,47,0,0,0,0,0,31,1,31,0,32,1,32,0,29,1,29,1,22,0.957,23,0,41,1,41,2,35,0.946,37,2,39,0.951,41,0,23,1,23,9,94,0.913,103,1,23,0.958,24,0,29,1,29,2,19,0.905,21,1,24,0.96,25,3,26,0.897,29,2,41,0.953,43,1,34,0.971,35,0,0,0,0,0,0,0,0,1,26,0.963,27,0,0,0,0,0,0,0,0,0,29,1,29,0,36,1,36,1,45,0.978,46,0,28,1,28,1,38,0.974,39,1,28,0.966,29,1,26,0.963,27,4,72,0.947,76,1,56,0.982,57,0,47,1,47,2,70,0.972,72,1,35,0.972,36,3,40,0.93,43,1,51,0.981,52,2,43,0.956,45,1,54,0.982,55,0,0,0,0,7,53,0.883,60,6,27,0.818,33,4,43,0.915,47,0,41,1,41,"NA","NA","Predicted to enable heparan sulfate proteoglycan binding activity. Predicted to be involved in regulation of synapse assembly. Predicted to act upstream of or within AMPA glutamate receptor clustering; positive regulation of synapse assembly; and regulation of presynaptic membrane organization. Predicted to be located in postsynaptic membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular matrix; extracellular space; and glutamatergic synapse. Predicted to be integral component of postsynaptic density membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr2",97138455,"A","G","No","ANKRD36","intron_variant","NA",28,17,0.583,0.378,804,471,166,105,970,576,0.103,0.069,0.091,45,"SRR12165859;SRR12166184;SRR12166187;SRR12166190;SRR12166192;SRR12166268;SRR12166290;SRR12166387;SRR12166405;SRR12166435;SRR12166444;SRR12166464;SRR12166494;SRR12166573;SRR12166759;SRR12166823;SRR12167000;SRR12167207;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167727;SRR12167862;SRR12167869;SRR12167872;SRR12167875;SRR12165815;SRR12166246;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166747;SRR12166748;SRR12166924;SRR12167002;SRR12167247;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167468","chr2",97804192,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",25728,1,1.149,"A","REP","intronic",24,5,0.172,29,0,0,0,0,0,0,0,0,0,0,0,0,22,5,0.185,27,0,0,0,0,23,4,0.148,27,15,5,0.25,20,25,6,0.194,31,0,0,0,0,51,6,0.105,57,32,9,0.22,41,0,0,0,0,18,5,0.217,23,18,5,0.217,23,30,4,0.118,34,36,4,0.1,40,0,0,0,0,28,5,0.152,33,22,7,0.241,29,0,0,0,0,27,9,0.25,36,0,0,0,0,41,10,0.196,51,0,0,0,0,47,6,0.113,53,23,4,0.148,27,0,0,0,0,0,0,0,0,0,0,0,0,31,4,0.114,35,0,0,0,0,36,4,0.1,40,0,0,0,0,0,0,0,0,25,7,0.219,32,28,10,0.263,38,24,7,0.226,31,48,6,0.111,54,0,0,0,0,38,6,0.136,44,0,0,0,0,22,5,0.185,27,0,0,0,0,21,3,0.125,24,19,5,0.208,24,30,10,0.25,40,0,0,0,0,0,0,0,0,43,5,0.104,48,0,0,0,0,0,0,0,0,16,7,0.304,23,0,0,0,0,26,5,0.161,31,33,9,0.214,42,35,15,0.3,50,22,4,0.154,26,0,0,0,0,40,8,0.167,48,0,0,0,0,0,0,0,0,0,0,0,0,18,4,0.182,22,21,3,0.125,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,4,0.182,22,0,0,0,0,0,0,0,0,0,0,0,0,21,4,0.16,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21,7,0.25,28,0,0,0,0,0,0,0,0,0,0,0,0,36,4,0.1,40,30,7,0.189,37,0,0,0,0,28,7,0.2,35,22,4,0.154,26,0,0,0,0,41,8,0.163,49,"NA","NA","NA","NA","NA","LINE","L1","L1P3","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr2",97271457,"A","G","No","NA","NA","NA",48,45,1,1,682,338,4230,2639,4912,2977,0.859,0.885,0.0092,93,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166355;SRR12166387;SRR12166405;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165792;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167351;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr2",97937194,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",25823,0,1.557,"NA","NA","NA",11,147,0.93,158,16,80,0.833,96,13,76,0.854,89,14,40,0.741,54,15,82,0.845,97,16,74,0.822,90,12,71,0.855,83,7,45,0.865,52,12,38,0.76,50,7,59,0.894,66,21,132,0.863,153,11,107,0.907,118,4,39,0.907,43,8,46,0.852,54,7,30,0.811,37,13,87,0.87,100,20,98,0.831,118,17,55,0.764,72,24,112,0.824,136,16,106,0.869,122,17,78,0.821,95,14,79,0.849,93,17,99,0.853,116,10,91,0.901,101,18,116,0.866,134,21,98,0.824,119,19,135,0.877,154,10,63,0.863,73,36,136,0.791,172,35,167,0.827,202,7,92,0.929,99,18,87,0.829,105,10,50,0.833,60,5,39,0.886,44,7,66,0.904,73,6,111,0.949,117,8,123,0.939,131,16,144,0.9,160,31,117,0.791,148,16,102,0.864,118,14,111,0.888,125,20,90,0.818,110,7,60,0.896,67,11,89,0.89,100,14,106,0.883,120,8,80,0.909,88,10,95,0.905,105,13,82,0.863,95,9,35,0.795,44,15,135,0.9,150,4,36,0.9,40,22,112,0.836,134,7,88,0.926,95,5,78,0.94,83,8,79,0.908,87,13,85,0.867,98,10,124,0.925,134,8,85,0.914,93,6,49,0.891,55,6,53,0.898,59,7,35,0.833,42,4,36,0.9,40,4,27,0.871,31,1,35,0.972,36,5,39,0.886,44,11,105,0.905,116,3,47,0.94,50,2,35,0.946,37,4,36,0.9,40,15,37,0.712,52,2,27,0.931,29,6,47,0.887,53,7,44,0.863,51,2,36,0.947,38,3,51,0.944,54,14,89,0.864,103,6,78,0.929,84,5,38,0.884,43,8,55,0.873,63,9,74,0.892,83,8,61,0.884,69,6,27,0.818,33,7,50,0.877,57,4,38,0.905,42,5,25,0.833,30,9,92,0.911,101,10,65,0.867,75,9,64,0.877,73,3,20,0.87,23,5,59,0.922,64,14,64,0.821,78,16,96,0.857,112,11,48,0.814,59,"NA","NA","NA","NA","NA","LINE","L1","L1PA12","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr2",200977694,"T","C","No","FAM126B","3_prime_UTR_variant","NA",45,43,0.938,0.956,1047,1335,1272,1731,2319,3066,0.514,0.543,0.3664,88,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166355;SRR12166387;SRR12166435;SRR12166444;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr2",201842417,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",149238,0,1.149,"A,R,D","ALU","ncRNA_intronic",23,21,0.477,44,20,16,0.444,36,19,23,0.548,42,13,15,0.536,28,16,20,0.556,36,18,27,0.6,45,37,38,0.507,75,36,34,0.486,70,15,8,0.348,23,16,20,0.556,36,30,28,0.483,58,12,27,0.692,39,4,17,0.81,21,10,13,0.565,23,0,0,0,0,16,29,0.644,45,12,20,0.625,32,0,0,0,0,18,26,0.591,44,15,17,0.531,32,38,44,0.537,82,23,37,0.617,60,13,23,0.639,36,19,32,0.627,51,32,39,0.549,71,31,29,0.483,60,49,59,0.546,108,27,20,0.426,47,25,21,0.457,46,24,23,0.489,47,49,69,0.585,118,17,21,0.553,38,11,27,0.711,38,0,0,0,0,30,35,0.538,65,61,70,0.534,131,40,79,0.664,119,16,30,0.652,46,31,23,0.426,54,37,21,0.362,58,25,18,0.419,43,14,10,0.417,24,16,34,0.68,50,19,21,0.525,40,14,25,0.641,39,20,19,0.487,39,17,24,0.585,41,19,20,0.513,39,0,0,0,0,23,27,0.54,50,9,17,0.654,26,24,34,0.586,58,14,17,0.548,31,23,22,0.489,45,30,29,0.492,59,33,32,0.492,65,41,43,0.512,84,31,40,0.563,71,9,20,0.69,29,103,118,0.534,221,12,24,0.667,36,15,22,0.595,37,17,16,0.485,33,15,32,0.681,47,15,20,0.571,35,16,20,0.556,36,18,36,0.667,54,15,34,0.694,49,17,11,0.393,28,18,19,0.514,37,20,16,0.444,36,11,10,0.476,21,12,21,0.636,33,27,20,0.426,47,15,16,0.516,31,19,34,0.642,53,24,31,0.564,55,20,22,0.524,42,9,39,0.812,48,49,64,0.566,113,54,75,0.581,129,24,48,0.667,72,41,64,0.61,105,53,71,0.573,124,54,68,0.557,122,82,116,0.586,198,29,47,0.618,76,36,71,0.664,107,0,0,0,0,69,71,0.507,140,40,51,0.56,91,94,94,0.5,188,55,49,0.471,104,"NA","NA","NA","NA","NA","SINE","Alu","AluJb","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr3",15072148,"T","C","No","RBSN","3_prime_UTR_variant","NA",44,43,0.917,0.956,1717,2043,612,635,2329,2678,0.241,0.227,0.468,87,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr3",15113655,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",189,0,1.842,"A,R,D","ALU","UTR3",23,7,0.233,30,52,23,0.307,75,38,23,0.377,61,33,23,0.411,56,29,14,0.326,43,35,5,0.125,40,48,18,0.273,66,61,17,0.218,78,20,8,0.286,28,20,14,0.412,34,41,10,0.196,51,31,8,0.205,39,0,0,0,0,0,0,0,0,0,0,0,0,29,10,0.256,39,28,6,0.176,34,24,20,0.455,44,37,17,0.315,54,27,13,0.325,40,50,18,0.265,68,45,10,0.182,55,24,14,0.368,38,26,10,0.278,36,42,16,0.276,58,45,17,0.274,62,54,19,0.26,73,23,8,0.258,31,40,15,0.273,55,44,15,0.254,59,81,11,0.12,92,46,11,0.193,57,33,14,0.298,47,0,0,0,0,57,13,0.186,70,71,26,0.268,97,75,50,0.4,125,45,7,0.135,52,51,9,0.15,60,42,15,0.263,57,44,13,0.228,57,17,12,0.414,29,29,8,0.216,37,27,9,0.25,36,35,12,0.255,47,34,7,0.171,41,30,11,0.268,41,31,6,0.162,37,0,0,0,0,45,11,0.196,56,31,8,0.205,39,47,11,0.19,58,41,16,0.281,57,41,11,0.212,52,40,10,0.2,50,42,6,0.125,48,47,15,0.242,62,44,6,0.12,50,22,13,0.371,35,96,20,0.172,116,33,12,0.267,45,30,8,0.211,38,22,10,0.312,32,41,19,0.317,60,44,15,0.254,59,39,18,0.316,57,37,9,0.196,46,32,10,0.238,42,30,9,0.231,39,26,9,0.257,35,22,6,0.214,28,24,7,0.226,31,24,4,0.143,28,28,5,0.152,33,29,9,0.237,38,19,13,0.406,32,36,6,0.143,42,23,9,0.281,32,37,18,0.327,55,64,18,0.22,82,79,29,0.269,108,37,17,0.315,54,74,21,0.221,95,101,29,0.223,130,84,28,0.25,112,94,36,0.277,130,46,13,0.22,59,79,23,0.225,102,0,0,0,0,84,24,0.222,108,59,12,0.169,71,98,29,0.228,127,72,33,0.314,105,"NA","NA","This gene encodes a protein that belongs to the FYVE zinc finger family of proteins. The encoded protein interacts with Ras-related proteins that regulate membrane trafficking. A missense mutation in this gene is associated with a defect in the early endocytic pathway. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2014]","NA","NA","SINE","Alu","AluSz6","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr3",116674662,"A","G","No","NA","NA","NA",26,16,0.542,0.356,557,344,205,114,762,458,0.15,0.09,0.0603,42,"SRR12165859;SRR12166096;SRR12166185;SRR12166268;SRR12166405;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166510;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167145;SRR12167207;SRR12167276;SRR12167396;SRR12167397;SRR12167499;SRR12167685;SRR12167727;SRR12167862;SRR12167867;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166748;SRR12166924;SRR12167002;SRR12167015;SRR12167177;SRR12167247;SRR12167279;SRR12167280;SRR12167304;SRR12167395","chr3",116393509,"NA","NA","NA","NA","NA","NA","hyper","+","ADAR",24898,0,1.557,"NA","NA","NA",11,9,0.45,20,16,4,0.2,20,0,0,0,0,0,0,0,0,0,0,0,0,16,8,0.333,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,40,9,0.184,49,0,0,0,0,0,0,0,0,0,0,0,0,18,8,0.308,26,21,7,0.25,28,25,3,0.107,28,20,4,0.167,24,27,13,0.325,40,0,0,0,0,15,6,0.286,21,0,0,0,0,0,0,0,0,17,3,0.15,20,14,6,0.3,20,23,9,0.281,32,25,7,0.219,32,0,0,0,0,0,0,0,0,16,6,0.273,22,28,6,0.176,34,23,5,0.179,28,0,0,0,0,0,0,0,0,0,0,0,0,35,11,0.239,46,29,13,0.31,42,16,11,0.407,27,0,0,0,0,37,6,0.14,43,25,6,0.194,31,0,0,0,0,16,9,0.36,25,11,11,0.5,22,0,0,0,0,0,0,0,0,16,13,0.448,29,17,12,0.414,29,0,0,0,0,16,11,0.407,27,0,0,0,0,23,5,0.179,28,0,0,0,0,0,0,0,0,0,0,0,0,30,9,0.231,39,14,16,0.533,30,25,4,0.138,29,0,0,0,0,30,5,0.143,35,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23,5,0.179,28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,2,0.1,20,0,0,0,0,0,0,0,0,0,0,0,0,13,8,0.381,21,0,0,0,0,15,9,0.375,24,25,5,0.167,30,0,0,0,0,0,0,0,0,17,5,0.227,22,0,0,0,0,0,0,0,0,32,8,0.2,40,16,12,0.429,28,28,5,0.152,33,0,0,0,0,19,5,0.208,24,0,0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr3",136331434,"A","G","No","PCCB","2kb_downstream_variant","NA",28,28,0.583,0.622,759,643,197,194,956,837,0.124,0.145,0.4197,56,"SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166268;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167397;SRR12167499;SRR12167511;SRR12167860;SRR12167862;SRR12167869;SRR12167872;SRR12167879;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166924;SRR12166978;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr3",136050276,"NA","NA","NA","NA","NA","NA","hyper","+","ADAR",8119,0,1.149,"A,R","ALU","intronic",0,0,0,0,26,4,0.133,30,18,5,0.217,23,0,0,0,0,22,11,0.333,33,20,6,0.231,26,73,12,0.141,85,47,11,0.19,58,0,0,0,0,0,0,0,0,48,11,0.186,59,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31,4,0.114,35,0,0,0,0,45,12,0.211,57,24,7,0.226,31,32,5,0.135,37,25,4,0.138,29,23,6,0.207,29,0,0,0,0,0,0,0,0,0,0,0,0,23,5,0.179,28,24,13,0.351,37,15,8,0.348,23,18,3,0.143,21,30,5,0.143,35,23,4,0.148,27,0,0,0,0,15,7,0.318,22,0,0,0,0,0,0,0,0,0,0,0,0,23,11,0.324,34,25,6,0.194,31,31,8,0.205,39,0,0,0,0,0,0,0,0,20,7,0.259,27,16,5,0.238,21,0,0,0,0,24,9,0.273,33,19,3,0.136,22,0,0,0,0,19,5,0.208,24,0,0,0,0,0,0,0,0,0,0,0,0,27,4,0.129,31,16,5,0.238,21,15,7,0.318,22,25,14,0.359,39,0,0,0,0,44,7,0.137,51,17,3,0.15,20,18,4,0.182,22,30,9,0.231,39,17,4,0.19,21,0,0,0,0,0,0,0,0,11,9,0.45,20,24,4,0.143,28,17,6,0.261,23,23,6,0.207,29,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24,5,0.172,29,0,0,0,0,0,0,0,0,32,5,0.135,37,0,0,0,0,0,0,0,0,0,0,0,0,20,7,0.259,27,22,8,0.267,30,14,7,0.333,21,16,5,0.238,21,27,14,0.341,41,36,15,0.294,51,25,8,0.242,33,23,3,0.115,26,16,5,0.238,21,0,0,0,0,19,8,0.296,27,27,3,0.1,30,36,13,0.265,49,22,6,0.214,28,"HP:0001254;HP:0001250;HP:0001249;HP:0001263;HP:0001263;HP:0001259;HP:0010978;HP:0002509;HP:0008872;HP:0001332;HP:0000007;HP:0410066;HP:0008936;HP:0002789;HP:0003353;HP:0003353;HP:0002019;HP:0002019;HP:0002013;HP:0002059;HP:0002154;HP:0002104;HP:0002240;HP:0002240;HP:0006846;HP:0001944;HP:0001943;HP:0001943;HP:0001942;HP:0001903;HP:0001992;HP:0001987;HP:0001987;HP:0004322;HP:0004396;HP:0003108;HP:0003128;HP:0000939;HP:0011695;HP:0011675;HP:0001508;HP:0001638;HP:0001638;HP:0001733;HP:0001873;HP:0001876;HP:0001875","Lethargy;Seizure;Intellectual disability;Global developmental delay;Global developmental delay;Coma;Abnormality of immune system physiology;Limb hypertonia;Feeding difficulties in infancy;Dystonia;Autosomal recessive inheritance;Increased level of hippuric acid in urine;Axial hypotonia;Tachypnea;Propionyl-CoA carboxylase deficiency;Propionyl-CoA carboxylase deficiency;Constipation;Constipation;Vomiting;Cerebral atrophy;Hyperglycinemia;Apnea;Hepatomegaly;Hepatomegaly;Acute encephalopathy;Dehydration;Hypoglycemia;Hypoglycemia;Metabolic acidosis;Anemia;Organic aciduria;Hyperammonemia;Hyperammonemia;Short stature;Poor appetite;Hyperglycinuria;Lactic acidosis;Osteoporosis;Cerebellar hemorrhage;Arrhythmia;Failure to thrive;Cardiomyopathy;Cardiomyopathy;Pancreatitis;Thrombocytopenia;Pancytopenia;Neutropenia","The protein encoded by this gene is a subunit of the propionyl-CoA carboxylase (PCC) enzyme, which is involved in the catabolism of propionyl-CoA. PCC is a mitochondrial enzyme that probably acts as a dodecamer of six alpha subunits and six beta subunits. This gene encodes the beta subunit of PCC. Defects in this gene are a cause of propionic acidemia type II (PA-2). Multiple transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, May 2010]","NA","NA","SINE","Alu","AluSx","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr4",21123092,"T","C","No","KCNIP4","intron_variant","NA",24,12,0.5,0.267,354,141,327,152,681,293,0.251,0.139,0.036,36,"SRR12165859;SRR12166184;SRR12166268;SRR12166435;SRR12166464;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167396;SRR12167397;SRR12167511;SRR12167685;SRR12167727;SRR12167862;SRR12167869;SRR12167879;SRR12165815;SRR12166237;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12167002;SRR12167247;SRR12167280;SRR12167304;SRR12167395;SRR12167407","chr4",21124715,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",183144,0,1.842,"A,R","ALU","intronic",11,12,0.522,23,0,0,0,0,0,0,0,0,0,0,0,0,8,12,0.6,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,15,0.484,31,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9,11,0.55,20,0,0,0,0,0,0,0,0,29,10,0.256,39,0,0,0,0,21,17,0.447,38,0,0,0,0,19,11,0.367,30,11,14,0.56,25,16,12,0.429,28,11,13,0.542,24,17,17,0.5,34,10,16,0.615,26,15,12,0.444,27,18,16,0.471,34,6,14,0.7,20,11,13,0.542,24,0,0,0,0,0,0,0,0,0,0,0,0,13,17,0.567,30,8,14,0.636,22,0,0,0,0,29,16,0.356,45,32,11,0.256,43,13,16,0.552,29,0,0,0,0,8,13,0.619,21,0,0,0,0,12,15,0.556,27,0,0,0,0,0,0,0,0,11,10,0.476,21,0,0,0,0,11,11,0.5,22,0,0,0,0,12,9,0.429,21,0,0,0,0,0,0,0,0,8,12,0.6,20,8,17,0.68,25,21,13,0.382,34,13,14,0.519,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,9,0.391,23,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9,15,0.625,24,0,0,0,0,0,0,0,0,0,0,0,0,13,12,0.48,25,10,13,0.565,23,0,0,0,0,10,13,0.565,23,0,0,0,0,12,14,0.538,26,0,0,0,0,"NA","NA","This gene encodes a member of the family of voltage-gated potassium (Kv) channel-interacting proteins (KCNIPs), which belong to the recoverin branch of the EF-hand superfamily. Members of the KCNIP family are small calcium binding proteins. They all have EF-hand-like domains, and differ from each other in the N-terminus. They are integral subunit components of native Kv4 channel complexes. They may regulate A-type currents, and hence neuronal excitability, in response to changes in intracellular calcium. This protein member also interacts with presenilin. Multiple alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr4",21441194,"T","C","No","KCNIP4","intron_variant","NA",28,15,0.583,0.333,777,303,341,129,1118,432,0.178,0.098,0.018,43,"SRR12165859;SRR12166184;SRR12166185;SRR12166190;SRR12166192;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167145;SRR12167499;SRR12167511;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166736;SRR12166747;SRR12166783;SRR12166832;SRR12166971;SRR12167002;SRR12167015","chr4",21442817,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",123289,0,1.95,"A","ALU","intronic",36,10,0.217,46,0,0,0,0,0,0,0,0,0,0,0,0,20,4,0.167,24,19,16,0.457,35,0,0,0,0,16,4,0.2,20,23,14,0.378,37,0,0,0,0,23,20,0.465,43,20,11,0.355,31,0,0,0,0,0,0,0,0,0,0,0,0,20,12,0.375,32,33,9,0.214,42,21,6,0.222,27,44,22,0.333,66,21,13,0.382,34,29,17,0.37,46,30,11,0.268,41,26,16,0.381,42,27,19,0.413,46,31,19,0.38,50,44,8,0.154,52,36,16,0.308,52,0,0,0,0,0,0,0,0,28,13,0.317,41,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32,7,0.179,39,31,14,0.311,45,0,0,0,0,0,0,0,0,31,8,0.205,39,14,10,0.417,24,30,11,0.268,41,43,7,0.14,50,29,13,0.31,42,0,0,0,0,20,11,0.355,31,0,0,0,0,30,18,0.375,48,0,0,0,0,19,9,0.321,28,16,6,0.273,22,20,6,0.231,26,17,8,0.32,25,27,12,0.308,39,31,12,0.279,43,12,12,0.5,24,0,0,0,0,0,0,0,0,0,0,0,0,18,2,0.1,20,0,0,0,0,13,11,0.458,24,0,0,0,0,26,8,0.235,34,20,4,0.167,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,7,0.292,24,0,0,0,0,20,8,0.286,28,0,0,0,0,17,6,0.261,23,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,"NA","NA","This gene encodes a member of the family of voltage-gated potassium (Kv) channel-interacting proteins (KCNIPs), which belong to the recoverin branch of the EF-hand superfamily. Members of the KCNIP family are small calcium binding proteins. They all have EF-hand-like domains, and differ from each other in the N-terminus. They are integral subunit components of native Kv4 channel complexes. They may regulate A-type currents, and hence neuronal excitability, in response to changes in intracellular calcium. This protein member also interacts with presenilin. Multiple alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr4",21664084,"T","C","No","KCNIP4","intron_variant","NA",43,36,0.896,0.8,1907,1042,412,212,2319,1254,0.162,0.135,0.0751,79,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166185;SRR12166187;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166355;SRR12166405;SRR12166435;SRR12166444;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165792;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166869;SRR12166904;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167279;SRR12167280;SRR12167304;SRR12167351;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr4",21665707,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",35386,0,1.842,"A","ALU","intronic",49,15,0.234,64,51,6,0.105,57,40,8,0.167,48,29,8,0.216,37,0,0,0,0,42,7,0.143,49,18,6,0.25,24,0,0,0,0,44,7,0.137,51,31,9,0.225,40,48,12,0.2,60,32,9,0.22,41,22,4,0.154,26,0,0,0,0,26,4,0.133,30,35,13,0.271,48,33,6,0.154,39,0,0,0,0,52,9,0.148,61,37,9,0.196,46,47,9,0.161,56,44,9,0.17,53,61,15,0.197,76,34,8,0.19,42,66,9,0.12,75,40,9,0.184,49,48,20,0.294,68,68,13,0.16,81,85,10,0.105,95,70,10,0.125,80,36,9,0.2,45,58,8,0.121,66,26,5,0.161,31,23,3,0.115,26,35,9,0.205,44,51,13,0.203,64,51,14,0.215,65,46,11,0.193,57,57,12,0.174,69,81,15,0.156,96,63,13,0.171,76,47,7,0.13,54,0,0,0,0,35,10,0.222,45,36,11,0.234,47,43,10,0.189,53,35,10,0.222,45,32,8,0.2,40,27,5,0.156,32,55,12,0.179,67,0,0,0,0,33,5,0.132,38,25,6,0.194,31,23,4,0.148,27,26,5,0.161,31,37,6,0.14,43,34,8,0.19,42,39,5,0.114,44,0,0,0,0,30,7,0.189,37,22,4,0.154,26,21,7,0.25,28,19,5,0.208,24,33,4,0.108,37,19,5,0.208,24,40,11,0.216,51,21,4,0.16,25,0,0,0,0,17,4,0.19,21,22,3,0.12,25,0,0,0,0,0,0,0,0,27,4,0.129,31,31,4,0.114,35,27,6,0.182,33,25,7,0.219,32,32,4,0.111,36,0,0,0,0,20,4,0.167,24,33,8,0.195,41,30,5,0.143,35,0,0,0,0,32,4,0.111,36,0,0,0,0,0,0,0,0,33,7,0.175,40,22,7,0.241,29,35,5,0.125,40,18,3,0.143,21,41,10,0.196,51,27,5,0.156,32,45,14,0.237,59,21,5,0.192,26,"NA","NA","This gene encodes a member of the family of voltage-gated potassium (Kv) channel-interacting proteins (KCNIPs), which belong to the recoverin branch of the EF-hand superfamily. Members of the KCNIP family are small calcium binding proteins. They all have EF-hand-like domains, and differ from each other in the N-terminus. They are integral subunit components of native Kv4 channel complexes. They may regulate A-type currents, and hence neuronal excitability, in response to changes in intracellular calcium. This protein member also interacts with presenilin. Multiple alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]","NA","NA","SINE","Alu","AluSz","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr4",21690432,"T","C","No","KCNIP4","intron_variant","NA",25,23,0.521,0.511,1409,928,241,169,1650,1097,0.079,0.078,0.9685,48,"SRR12165859;SRR12166185;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166387;SRR12166435;SRR12166459;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167207;SRR12167307;SRR12167315;SRR12167396;SRR12167397;SRR12167499;SRR12167727;SRR12167869;SRR12167872;SRR12167875;SRR12165792;SRR12166237;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166659;SRR12166736;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166912;SRR12166967;SRR12167002;SRR12167015;SRR12167177;SRR12167206;SRR12167279;SRR12167351;SRR12167395;SRR12167407;SRR12167468","chr4",21692055,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",9038,0,1.379,"NA","NA","NA",70,13,0.157,83,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,44,8,0.154,52,0,0,0,0,15,8,0.348,23,0,0,0,0,38,5,0.116,43,81,9,0.1,90,62,11,0.151,73,0,0,0,0,26,6,0.188,32,0,0,0,0,67,12,0.152,79,0,0,0,0,38,5,0.116,43,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,59,10,0.145,69,55,11,0.167,66,61,12,0.164,73,54,14,0.206,68,89,10,0.101,99,68,12,0.15,80,0,0,0,0,0,0,0,0,53,12,0.185,65,0,0,0,0,35,5,0.125,40,29,4,0.121,33,0,0,0,0,77,16,0.172,93,71,13,0.155,84,70,10,0.125,80,0,0,0,0,0,0,0,0,73,10,0.12,83,0,0,0,0,0,0,0,0,0,0,0,0,67,10,0.13,77,47,7,0.13,54,60,8,0.118,68,0,0,0,0,35,7,0.167,42,0,0,0,0,0,0,0,0,57,12,0.174,69,0,0,0,0,34,9,0.209,43,39,6,0.133,45,65,8,0.11,73,48,6,0.111,54,0,0,0,0,0,0,0,0,33,5,0.132,38,0,0,0,0,34,8,0.19,42,0,0,0,0,0,0,0,0,0,0,0,0,56,16,0.222,72,23,6,0.207,29,37,5,0.119,42,22,4,0.154,26,0,0,0,0,0,0,0,0,31,5,0.139,36,0,0,0,0,38,6,0.136,44,0,0,0,0,0,0,0,0,45,5,0.1,50,0,0,0,0,46,7,0.132,53,60,11,0.155,71,34,5,0.128,39,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26,7,0.212,33,0,0,0,0,0,0,0,0,20,3,0.13,23,45,9,0.167,54,0,0,0,0,61,14,0.187,75,39,5,0.114,44,"NA","NA","This gene encodes a member of the family of voltage-gated potassium (Kv) channel-interacting proteins (KCNIPs), which belong to the recoverin branch of the EF-hand superfamily. Members of the KCNIP family are small calcium binding proteins. They all have EF-hand-like domains, and differ from each other in the N-terminus. They are integral subunit components of native Kv4 channel complexes. They may regulate A-type currents, and hence neuronal excitability, in response to changes in intracellular calcium. This protein member also interacts with presenilin. Multiple alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]","NA","NA","LTR","ERVL-MaLR","MSTB","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr4",21896700,"T","C","No","KCNIP4","intron_variant","NA",33,30,0.688,0.667,1181,885,223,180,1404,1065,0.109,0.112,0.8862,63,"SRR12165859;SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166192;SRR12166268;SRR12166290;SRR12166387;SRR12166444;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12166237;SRR12166246;SRR12166264;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166748;SRR12166783;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166971;SRR12167002;SRR12167012;SRR12167177;SRR12167222;SRR12167279;SRR12167280;SRR12167304;SRR12167351;SRR12167395;SRR12167407;SRR12167468","chr4",21898323,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",54382,0,1.664,"A,R","ALU","intronic",46,8,0.148,54,34,4,0.105,38,34,4,0.105,38,0,0,0,0,19,4,0.174,23,18,2,0.1,20,0,0,0,0,0,0,0,0,18,3,0.143,21,0,0,0,0,22,3,0.12,25,29,5,0.147,34,0,0,0,0,17,5,0.227,22,0,0,0,0,0,0,0,0,34,6,0.15,40,0,0,0,0,0,0,0,0,19,6,0.24,25,43,5,0.104,48,37,7,0.159,44,41,9,0.18,50,38,8,0.174,46,47,6,0.113,53,0,0,0,0,66,11,0.143,77,62,14,0.184,76,28,6,0.176,34,32,7,0.179,39,44,5,0.102,49,41,6,0.128,47,0,0,0,0,0,0,0,0,27,7,0.206,34,0,0,0,0,44,9,0.17,53,37,7,0.159,44,45,8,0.151,53,54,10,0.156,64,44,13,0.228,57,31,4,0.114,35,0,0,0,0,31,10,0.244,41,34,9,0.209,43,0,0,0,0,32,8,0.2,40,33,4,0.108,37,0,0,0,0,0,0,0,0,0,0,0,0,34,7,0.171,41,30,4,0.118,34,29,8,0.216,37,0,0,0,0,45,10,0.182,55,28,6,0.176,34,29,5,0.147,34,20,4,0.167,24,35,10,0.222,45,21,4,0.16,25,24,8,0.25,32,17,3,0.15,20,0,0,0,0,25,4,0.138,29,34,8,0.19,42,0,0,0,0,0,0,0,0,20,5,0.2,25,34,4,0.105,38,22,3,0.12,25,29,7,0.194,36,27,5,0.156,32,0,0,0,0,34,5,0.128,39,0,0,0,0,29,4,0.121,33,22,3,0.12,25,0,0,0,0,38,8,0.174,46,0,0,0,0,30,8,0.211,38,0,0,0,0,0,0,0,0,0,0,0,0,35,9,0.205,44,33,7,0.175,40,45,7,0.135,52,17,3,0.15,20,37,10,0.213,47,0,0,0,0,42,5,0.106,47,20,6,0.231,26,"NA","NA","This gene encodes a member of the family of voltage-gated potassium (Kv) channel-interacting proteins (KCNIPs), which belong to the recoverin branch of the EF-hand superfamily. Members of the KCNIP family are small calcium binding proteins. They all have EF-hand-like domains, and differ from each other in the N-terminus. They are integral subunit components of native Kv4 channel complexes. They may regulate A-type currents, and hence neuronal excitability, in response to changes in intracellular calcium. This protein member also interacts with presenilin. Multiple alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]","NA","NA","SINE","Alu","AluSz","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr4",112935691,"A","G","No","ANK2","intron_variant","NA",27,11,0.562,0.244,617,226,189,87,806,313,0.131,0.068,0.021,38,"SRR12166108;SRR12166184;SRR12166185;SRR12166187;SRR12166268;SRR12166290;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167145;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166310;SRR12166321;SRR12166331;SRR12166659;SRR12166748;SRR12167247;SRR12167279;SRR12167395;SRR12167407","chr4",113856847,"NA","NA","NA","NA","NA","NA","hyper","+","ADAR",58030,1,0.863,"A","ALU","intronic",0,0,0,0,0,0,0,0,16,4,0.2,20,0,0,0,0,22,6,0.214,28,23,10,0.303,33,24,13,0.351,37,0,0,0,0,0,0,0,0,0,0,0,0,39,8,0.17,47,23,4,0.148,27,0,0,0,0,0,0,0,0,0,0,0,0,33,5,0.132,38,0,0,0,0,0,0,0,0,26,3,0.103,29,20,5,0.2,25,23,8,0.258,31,0,0,0,0,23,8,0.258,31,22,5,0.185,27,22,6,0.214,28,23,11,0.324,34,31,15,0.326,46,15,5,0.25,20,0,0,0,0,18,4,0.182,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21,7,0.25,28,22,14,0.389,36,21,10,0.323,31,18,7,0.28,25,36,4,0.1,40,20,3,0.13,23,15,9,0.375,24,21,7,0.25,28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,5,0.238,21,24,3,0.111,27,0,0,0,0,30,9,0.231,39,0,0,0,0,19,10,0.345,29,0,0,0,0,0,0,0,0,19,7,0.269,26,23,9,0.281,32,33,11,0.25,44,0,0,0,0,0,0,0,0,20,4,0.167,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,5,0.25,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,5,0.227,22,0,0,0,0,0,0,0,0,15,5,0.25,20,0,0,0,0,0,0,0,0,0,0,0,0,13,9,0.409,22,0,0,0,0,22,13,0.371,35,0,0,0,0,"HP:0001197;HP:0001279;HP:0001279;HP:0001250;HP:0000006;HP:0500018;HP:0004308;HP:0005135;HP:0005110;HP:0005184;HP:0002900;HP:0000365;HP:0001688;HP:0001688;HP:0012332;HP:0001664;HP:0001645;HP:0001645;HP:0001657","Abnormality of prenatal development or birth;Syncope;Syncope;Seizure;Autosomal dominant inheritance;Abnormal cardiac exercise stress test;Ventricular arrhythmia;Abnormal T-wave;Atrial fibrillation;Prolonged QTc interval;Hypokalemia;Hearing impairment;Sinus bradycardia;Sinus bradycardia;Abnormal autonomic nervous system physiology;Torsade de pointes;Sudden cardiac death;Sudden cardiac death;Prolonged QT interval","This gene encodes a member of the ankyrin family of proteins that link the integral membrane proteins to the underlying spectrin-actin cytoskeleton. Ankyrins play key roles in activities such as cell motility, activation, proliferation, contact and the maintenance of specialized membrane domains. Most ankyrins are typically composed of three structural domains: an amino-terminal domain containing multiple ankyrin repeats; a central region with a highly conserved spectrin binding domain; and a carboxy-terminal regulatory domain which is the least conserved and subject to variation. The protein encoded by this gene is required for targeting and stability of Na/Ca exchanger 1 in cardiomyocytes. Mutations in this gene cause long QT syndrome 4 and cardiac arrhythmia syndrome. Multiple transcript variants encoding different isoforms have been described. [provided by RefSeq, Dec 2011]","NA","NA","SINE","Alu","AluSz6","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr5",131201599,"A","G","No","LYRM7","3_prime_UTR_variant","NA",41,43,0.854,0.956,102,115,1575,1866,1677,1981,0.805,0.904,0.0903,84,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr5",130537292,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",8735,0,1.95,"A,R,D","ALU","UTR3",5,66,0.93,71,5,45,0.9,50,2,45,0.957,47,1,30,0.968,31,1,22,0.957,23,0,22,1,22,4,51,0.927,55,3,54,0.947,57,0,0,0,0,3,48,0.941,51,5,30,0.857,35,4,28,0.875,32,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,26,0.963,27,1,26,0.963,27,1,35,0.972,36,1,28,0.966,29,2,48,0.96,50,2,44,0.957,46,2,44,0.957,46,3,49,0.942,52,3,40,0.93,43,5,60,0.923,65,5,82,0.943,87,0,24,1,24,6,38,0.864,44,5,36,0.878,41,1,53,0.981,54,1,23,0.958,24,0,0,0,0,0,0,0,0,1,33,0.971,34,3,52,0.945,55,2,42,0.955,44,4,49,0.925,53,5,30,0.857,35,2,23,0.92,25,2,30,0.938,32,0,27,1,27,2,28,0.933,30,0,28,1,28,2,31,0.939,33,5,38,0.884,43,0,31,1,31,2,36,0.947,38,0,0,0,0,4,42,0.913,46,2,38,0.95,40,5,38,0.884,43,4,32,0.889,36,4,39,0.907,43,7,61,0.897,68,2,50,0.962,52,3,54,0.947,57,1,37,0.974,38,2,21,0.913,23,6,69,0.92,75,1,39,0.975,40,1,24,0.96,25,1,32,0.97,33,0,30,1,30,2,47,0.959,49,4,59,0.937,63,2,48,0.96,50,1,35,0.972,36,1,36,0.973,37,1,40,0.976,41,8,40,0.833,48,1,22,0.957,23,0,20,1,20,2,37,0.949,39,0,51,1,51,5,39,0.886,44,1,39,0.975,40,2,50,0.962,52,1,22,0.957,23,6,55,0.902,61,4,59,0.937,63,1,28,0.966,29,1,40,0.976,41,1,63,0.984,64,1,53,0.981,54,3,57,0.95,60,1,31,0.969,32,3,52,0.945,55,0,0,0,0,7,67,0.905,74,0,34,1,34,9,98,0.916,107,4,38,0.905,42,"HP:0002490;HP:0001298;HP:0001290;HP:0001272;HP:0001288;HP:0001285;HP:0001254;HP:0001251;HP:0001249;HP:0001260;HP:0001263;HP:0001257;HP:0001259;HP:0007366;HP:0002518;HP:0002505;HP:0003819;HP:0001348;HP:0033725;HP:0001324;HP:0000007;HP:0008936;HP:0002789;HP:0003348;HP:0002059;HP:0003487;HP:0011924;HP:0003593;HP:0002283;HP:0002376;HP:0003676;HP:0003678;HP:0003621;HP:0000639;HP:0001903;HP:0012707;HP:0011463;HP:0003128;HP:0040081;HP:0045045;HP:0002878;HP:0001508;HP:0000508;HP:0000505;HP:0000577;HP:0000543;HP:0000544","Increased CSF lactate;Encephalopathy;Generalized hypotonia;Cerebellar atrophy;Gait disturbance;Spastic tetraparesis;Lethargy;Ataxia;Intellectual disability;Dysarthria;Global developmental delay;Spasticity;Coma;Atrophy/Degeneration affecting the brainstem;Abnormal periventricular white matter morphology;Loss of ambulation;Death in childhood;Brisk reflexes;Thin corpus callosum;Muscle weakness;Autosomal recessive inheritance;Axial hypotonia;Tachypnea;Hyperalaninemia;Cerebral atrophy;Babinski sign;Decreased activity of mitochondrial complex III;Infantile onset;Global brain atrophy;Developmental regression;Progressive;Rapidly progressive;Juvenile onset;Nystagmus;Anemia;Elevated brain lactate level by MRS;Childhood onset;Lactic acidosis;Abnormal circulating creatine kinase concentration;Elevated circulating acylcarnitine concentration;Respiratory failure;Failure to thrive;Ptosis;Visual impairment;Exotropia;Optic disc pallor;External ophthalmoplegia","Inner mitochondrial membrane complex III (CIII) is the main enzyme complex in the mitochondrial respiratory chain, and Rieske Fe-S protein (UQCRFS1) is the last catalytic subunit added to the complex. The protein encoded by this gene is a nuclear-encoded mitochondrial matrix protein that stabilizes UQCRFS1 and chaperones it to the CIII complex. Defects in this gene are a cause of mitochondrial complex III deficiency, nuclear type 8. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Jun 2014]","NA","NA","SINE","Alu","AluSp","rs1391652150","NA","NA","NA","NA","NA","NA","NA"]
["chr5",139304280,"A","G","No","MATR3","intron_variant","NA",28,19,0.583,0.422,251,106,538,387,789,493,0.394,0.336,0.4605,47,"SRR12165859;SRR12166096;SRR12166108;SRR12166185;SRR12166268;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167276;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166747;SRR12166748;SRR12166783;SRR12167002;SRR12167015;SRR12167206;SRR12167247;SRR12167279;SRR12167304;SRR12167395;SRR12167404;SRR12167407","chr5",138639969,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",37184,0,1.149,"A,R,D","ALU","intronic",3,22,0.88,25,13,8,0.381,21,17,10,0.37,27,0,0,0,0,0,0,0,0,19,18,0.486,37,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11,16,0.593,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7,14,0.667,21,13,21,0.618,34,9,14,0.609,23,7,13,0.65,20,7,29,0.806,36,0,0,0,0,6,23,0.793,29,7,32,0.821,39,5,27,0.844,32,5,24,0.828,29,12,13,0.52,25,18,6,0.25,24,0,0,0,0,7,13,0.65,20,0,0,0,0,0,0,0,0,0,0,0,0,2,25,0.926,27,8,28,0.778,36,8,21,0.724,29,17,18,0.514,35,8,19,0.704,27,10,19,0.655,29,9,21,0.7,30,9,20,0.69,29,3,22,0.88,25,0,0,0,0,0,0,0,0,7,26,0.788,33,4,16,0.8,20,0,0,0,0,9,32,0.78,41,0,0,0,0,6,21,0.778,27,0,0,0,0,0,0,0,0,8,17,0.68,25,4,24,0.857,28,5,29,0.853,34,6,25,0.806,31,0,0,0,0,5,19,0.792,24,0,0,0,0,0,0,0,0,0,0,0,0,2,22,0.917,24,14,17,0.548,31,1,23,0.958,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,17,0.85,20,0,0,0,0,5,17,0.773,22,0,0,0,0,5,15,0.75,20,0,0,0,0,2,19,0.905,21,0,0,0,0,0,0,0,0,3,17,0.85,20,0,0,0,0,3,18,0.857,21,0,0,0,0,3,17,0.85,20,6,14,0.7,20,16,24,0.6,40,0,0,0,0,"HP:0002483;HP:0002463;HP:0002460;HP:0002460;HP:0003738;HP:0001283;HP:0001283;HP:0001260;HP:0001260;HP:0001260;HP:0001257;HP:0008756;HP:0008756;HP:0007373;HP:0007354;HP:0007354;HP:0007354;HP:0007340;HP:0003805;HP:0003805;HP:0033683;HP:0001347;HP:0001347;HP:0001347;HP:0000006;HP:0025425;HP:0008955;HP:0002795;HP:0001430;HP:0002747;HP:0002747;HP:0002017;HP:0002015;HP:0002015;HP:0002015;HP:0003324;HP:0100543;HP:0002094;HP:0003394;HP:0005934;HP:0008180;HP:0002145;HP:0003470;HP:0003487;HP:0003484;HP:0003457;HP:0002127;HP:0002180;HP:0003596;HP:0003581;HP:0003547;HP:0003547;HP:0003557;HP:0430015;HP:0002380;HP:0002366;HP:0002360;HP:0002355;HP:0003687;HP:0002317;HP:0007149;HP:0009071;HP:0009067;HP:0009053;HP:0009027;HP:0004326;HP:0000762;HP:0000762;HP:0000739;HP:0000716;HP:0000712;HP:0000713;HP:0000726;HP:0000726;HP:0000708;HP:0011462;HP:0003236;HP:0003202;HP:0008049;HP:0000217;HP:0002878;HP:0031374;HP:0002835;HP:0002835;HP:0012378;HP:0001609;HP:0001609;HP:0002936;HP:0002936;HP:0001604;HP:0030196;HP:0030195;HP:0030192;HP:0001611;HP:0001621;HP:0012473;HP:0030237;HP:0012531","Bulbar signs;Language impairment;Distal muscle weakness;Distal muscle weakness;Exercise-induced myalgia;Bulbar palsy;Bulbar palsy;Dysarthria;Dysarthria;Dysarthria;Spasticity;Bowing of the vocal cords;Bowing of the vocal cords;Motor neuron atrophy;Amyotrophic lateral sclerosis;Amyotrophic lateral sclerosis;Amyotrophic lateral sclerosis;Lower limb muscle weakness;Rimmed vacuoles;Rimmed vacuoles;Jaw hyperreflexia;Hyperreflexia;Hyperreflexia;Hyperreflexia;Autosomal dominant inheritance;Laryngospasm;Progressive distal muscular atrophy;Abnormal respiratory system physiology;Abnormal calf musculature morphology;Respiratory insufficiency due to muscle weakness;Respiratory insufficiency due to muscle weakness;Nausea and vomiting;Dysphagia;Dysphagia;Dysphagia;Generalized muscle weakness;Cognitive impairment;Dyspnea;Muscle spasm;Imperfect vocal cord adduction;Mildly elevated creatine kinase;Frontotemporal dementia;Paralysis;Babinski sign;Upper limb muscle weakness;EMG abnormality;Abnormal upper motor neuron morphology;Neurodegeneration;Middle age onset;Adult onset;Shoulder girdle muscle weakness;Shoulder girdle muscle weakness;Increased variability in muscle fiber diameter;Abnormal morphology of musculature of pharynx;Fasciculations;Abnormal lower motor neuron morphology;Sleep abnormality;Difficulty walking;Centrally nucleated skeletal muscle fibers;Unsteady gait;Distal upper limb amyotrophy;Inflammatory myopathy;Progressive spinal muscular atrophy;Distal lower limb muscle weakness;Foot dorsiflexor weakness;Cachexia;Decreased nerve conduction velocity;Decreased nerve conduction velocity;Anxiety;Depression;Emotional lability;Agitation;Dementia;Dementia;Atypical behavior;Young adult onset;Elevated circulating creatine kinase concentration;Skeletal muscle atrophy;Abnormality of the extraocular muscles;Xerostomia;Respiratory failure;Ankle weakness;Aspiration;Aspiration;Fatigue;Hoarse voice;Hoarse voice;Distal sensory impairment;Distal sensory impairment;Vocal cord paresis;Fatigable weakness of respiratory muscles;Fatigable weakness of swallowing muscles;Fatigable weakness of bulbar muscles;Hypernasal speech;Weak voice;Tongue atrophy;Hand muscle weakness;Pain","This gene encodes a nuclear matrix protein, which is proposed to stabilize certain messenger RNA species. Mutations of this gene are associated with distal myopathy 2, which often includes vocal cord and pharyngeal weakness. Alternatively spliced transcript variants, including read-through transcripts composed of the upstream small nucleolar RNA host gene 4 (non-protein coding) and matrin 3 gene sequence, have been identified. Pseudogenes of this gene are located on chromosomes 1 and X. [provided by RefSeq, Aug 2013]","NA","NA","SINE","Alu","AluSp","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr6",68859688,"A","G","No","ADGRB3","intron_variant","NA",34,22,0.708,0.489,842,490,290,163,1132,653,0.183,0.12,0.0249,56,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166748;SRR12166783;SRR12166924;SRR12166978;SRR12167177;SRR12167247;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr6",69569580,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",77496,0,1.379,"A,R","REP","intronic",18,13,0.419,31,32,6,0.158,38,30,4,0.118,34,20,7,0.259,27,23,7,0.233,30,17,6,0.261,23,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,7,0.304,23,32,7,0.179,39,0,0,0,0,22,6,0.214,28,34,10,0.227,44,0,0,0,0,23,5,0.179,28,0,0,0,0,24,6,0.2,30,18,8,0.308,26,27,12,0.308,39,16,11,0.407,27,37,14,0.275,51,32,8,0.2,40,40,10,0.2,50,28,7,0.2,35,32,10,0.238,42,27,10,0.27,37,23,3,0.115,26,0,0,0,0,18,11,0.379,29,27,7,0.206,34,27,11,0.289,38,22,9,0.29,31,24,13,0.351,37,35,16,0.314,51,21,6,0.222,27,0,0,0,0,20,8,0.286,28,24,6,0.2,30,17,7,0.292,24,22,9,0.29,31,0,0,0,0,14,10,0.417,24,0,0,0,0,31,13,0.295,44,0,0,0,0,20,11,0.355,31,15,10,0.4,25,15,6,0.286,21,0,0,0,0,28,14,0.333,42,34,7,0.171,41,23,6,0.207,29,0,0,0,0,20,4,0.167,24,19,3,0.136,22,0,0,0,0,0,0,0,0,0,0,0,0,17,4,0.19,21,23,7,0.233,30,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,5,0.227,22,0,0,0,0,0,0,0,0,17,10,0.37,27,0,0,0,0,0,0,0,0,0,0,0,0,17,4,0.19,21,0,0,0,0,0,0,0,0,24,7,0.226,31,0,0,0,0,0,0,0,0,24,6,0.2,30,18,8,0.308,26,22,8,0.267,30,0,0,0,0,34,13,0.277,47,24,5,0.172,29,30,9,0.231,39,18,3,0.143,21,"NA","NA","This p53-target gene encodes a brain-specific angiogenesis inhibitor, a seven-span transmembrane protein, and is thought to be a member of the secretin receptor family. Brain-specific angiogenesis proteins BAI2 and BAI3 are similar to BAI1 in structure, have similar tissue specificities, and may also play a role in angiogenesis. [provided by RefSeq, Jul 2008]","NA","NA","LTR","ERVL-MaLR","THE1B","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr7",44042047,"A","G","No","LINC00957","lnc_RNA","NA",39,37,0.812,0.822,1143,1111,354,327,1497,1438,0.194,0.18,0.5485,76,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166444;SRR12166459;SRR12166464;SRR12166510;SRR12166573;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166910;SRR12166912;SRR12166967;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr7",44081646,"NA","NA","NA","NA","promoter","ENSR00000211773","regular_and_hyper","+","ADAR",142,0,1.379,"A,R,D","ALU","ncRNA_exonic",19,7,0.269,26,60,19,0.241,79,46,15,0.246,61,36,7,0.163,43,9,11,0.55,20,32,6,0.158,38,21,8,0.276,29,18,7,0.28,25,21,7,0.25,28,19,3,0.136,22,32,11,0.256,43,22,5,0.185,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,7,0.333,21,25,12,0.324,37,29,9,0.237,38,0,0,0,0,27,8,0.229,35,32,11,0.256,43,0,0,0,0,33,8,0.195,41,32,16,0.333,48,35,10,0.222,45,38,8,0.174,46,29,13,0.31,42,38,6,0.136,44,42,8,0.16,50,46,10,0.179,56,23,10,0.303,33,0,0,0,0,0,0,0,0,30,4,0.118,34,34,12,0.261,46,34,17,0.333,51,24,5,0.172,29,27,7,0.206,34,39,17,0.304,56,44,12,0.214,56,28,5,0.152,33,19,6,0.24,25,21,3,0.125,24,19,11,0.367,30,24,5,0.172,29,0,0,0,0,22,8,0.267,30,0,0,0,0,21,6,0.222,27,21,5,0.192,26,25,7,0.219,32,24,8,0.25,32,20,6,0.231,26,22,7,0.241,29,29,13,0.31,42,24,7,0.226,31,24,5,0.172,29,0,0,0,0,55,13,0.191,68,22,3,0.12,25,0,0,0,0,24,5,0.172,29,16,4,0.2,20,32,10,0.238,42,19,7,0.269,26,29,5,0.147,34,22,5,0.185,27,26,4,0.133,30,0,0,0,0,18,4,0.182,22,27,5,0.156,32,0,0,0,0,27,6,0.182,33,0,0,0,0,0,0,0,0,28,7,0.2,35,19,6,0.24,25,14,7,0.333,21,33,7,0.175,40,33,21,0.389,54,18,9,0.333,27,38,15,0.283,53,42,12,0.222,54,39,13,0.25,52,48,11,0.186,59,32,8,0.2,40,36,9,0.2,45,0,0,0,0,53,10,0.159,63,30,5,0.143,35,75,38,0.336,113,46,14,0.233,60,"NA","NA","NA","NA","NA","SINE","Alu","AluSc","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr7",97923023,"T","C","No","AC079781.5","lnc_RNA","NA",27,13,0.562,0.289,31,23,705,309,736,332,0.539,0.268,0.0052,40,"SRR12165859;SRR12166185;SRR12166268;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167727;SRR12167860;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166264;SRR12166310;SRR12166331;SRR12166783;SRR12166832;SRR12167177;SRR12167206;SRR12167279;SRR12167304;SRR12167395;SRR12167407","chr7",97552335,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",2600,0,1.95,"A,R","ALU","ncRNA_intronic",1,27,0.964,28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28,1,28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34,1,34,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24,1,24,0,0,0,0,0,0,0,0,2,38,0.95,40,0,29,1,29,1,23,0.958,24,0,0,0,0,2,26,0.929,28,4,27,0.871,31,1,35,0.972,36,0,0,0,0,3,28,0.903,31,0,0,0,0,3,26,0.897,29,1,19,0.95,20,0,22,1,22,0,20,1,20,0,0,0,0,0,0,0,0,0,21,1,21,3,26,0.897,29,0,30,1,30,1,27,0.964,28,1,26,0.963,27,0,0,0,0,2,22,0.917,24,1,21,0.955,22,0,0,0,0,0,22,1,22,4,21,0.84,25,0,38,1,38,0,23,1,23,1,22,0.957,23,0,0,0,0,4,18,0.818,22,0,0,0,0,3,17,0.85,20,0,0,0,0,1,23,0.958,24,0,24,1,24,0,0,0,0,1,36,0.973,37,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,28,0.875,32,0,22,1,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23,1,23,1,20,0.952,21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,21,0.84,25,0,0,0,0,1,28,0.966,29,0,0,0,0,3,22,0.88,25,0,0,0,0,1,27,0.964,28,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","AluSx","NA","NA","NA","NA","NA","NA","lincRNA","TCONS_l2_00026766:1"]
["chr7",102649721,"T","C","No","SPDYE2B","2kb_upstream_variant","NA",30,8,0.625,0.178,1010,200,194,45,1204,245,0.102,0.034,0.0002,38,"SRR12165859;SRR12166110;SRR12166185;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166464;SRR12166494;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167315;SRR12167397;SRR12167499;SRR12167511;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167879;SRR12165792;SRR12165815;SRR12166246;SRR12166310;SRR12166346;SRR12166783;SRR12167395;SRR12167407","chr7",102290168,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",15789,0,1.557,"A","ALU","ncRNA_intronic",38,6,0.136,44,0,0,0,0,0,0,0,0,22,4,0.154,26,0,0,0,0,21,3,0.125,24,0,0,0,0,0,0,0,0,25,4,0.138,29,18,3,0.143,21,50,6,0.107,56,34,7,0.171,41,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47,7,0.13,54,27,7,0.206,34,0,0,0,0,18,6,0.25,24,33,8,0.195,41,48,10,0.172,58,50,10,0.167,60,35,9,0.205,44,22,3,0.12,25,27,6,0.182,33,0,0,0,0,58,9,0.134,67,27,4,0.129,31,25,4,0.138,29,28,4,0.125,32,25,3,0.107,28,0,0,0,0,0,0,0,0,30,6,0.167,36,41,13,0.241,54,70,9,0.114,79,0,0,0,0,0,0,0,0,50,12,0.194,62,23,5,0.179,28,41,5,0.109,46,34,7,0.171,41,20,9,0.31,29,0,0,0,0,23,5,0.179,28,22,4,0.154,26,43,7,0.14,50,0,0,0,0,0,0,0,0,19,7,0.269,26,0,0,0,0,21,5,0.192,26,0,0,0,0,0,0,0,0,15,7,0.318,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32,8,0.2,40,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23,3,0.115,26,0,0,0,0,25,4,0.138,29,0,0,0,0,"NA","NA","Predicted to enable protein kinase binding activity. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSx3","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr7",130926909,"T","C","No","LINC00513","lnc_RNA","NA",39,15,0.812,0.333,972,261,395,137,1367,398,0.234,0.114,0.0008,54,"SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166187;SRR12166192;SRR12166268;SRR12166290;SRR12166387;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166554;SRR12166659;SRR12166912;SRR12166924;SRR12167002;SRR12167279;SRR12167395;SRR12167407","chr7",130611668,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",39176,1,1.379,"A","ALU","ncRNA_intronic",0,0,0,0,27,6,0.182,33,20,7,0.259,27,0,0,0,0,15,14,0.483,29,28,10,0.263,38,16,6,0.273,22,0,0,0,0,20,5,0.2,25,0,0,0,0,39,19,0.328,58,26,20,0.435,46,0,0,0,0,19,8,0.296,27,17,4,0.19,21,35,25,0.417,60,0,0,0,0,31,4,0.114,35,38,8,0.174,46,25,23,0.479,48,12,8,0.4,20,17,6,0.261,23,41,24,0.369,65,20,13,0.394,33,22,5,0.185,27,9,13,0.591,22,18,6,0.25,24,25,12,0.324,37,31,5,0.139,36,44,6,0.12,50,15,8,0.348,23,33,4,0.108,37,0,0,0,0,0,0,0,0,0,0,0,0,19,9,0.321,28,25,7,0.219,32,16,11,0.407,27,36,5,0.122,41,33,5,0.132,38,27,7,0.206,34,35,10,0.222,45,24,14,0.368,38,18,16,0.471,34,32,10,0.238,42,24,9,0.273,33,21,17,0.447,38,19,6,0.24,25,0,0,0,0,26,13,0.333,39,0,0,0,0,16,6,0.273,22,8,12,0.6,20,20,10,0.333,30,20,7,0.259,27,27,11,0.289,38,24,20,0.455,44,0,0,0,0,14,8,0.364,22,13,8,0.381,21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,5,0.25,20,17,4,0.19,21,0,0,0,0,0,0,0,0,0,0,0,0,14,8,0.364,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12,11,0.478,23,0,0,0,0,0,0,0,0,0,0,0,0,14,6,0.3,20,0,0,0,0,21,8,0.276,29,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","AluSx1","NA","NA","NA","NA","NA","NA","lincRNA","TCONS_00013599:1"]
["chr8",4879483,"T","C","No","CSMD1","intron_variant","NA",13,24,0.271,0.533,388,650,66,168,454,818,0.04,0.112,0.0007,37,"SRR12165859;SRR12166435;SRR12166510;SRR12166573;SRR12166753;SRR12167207;SRR12167276;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167867;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166321;SRR12166331;SRR12166346;SRR12166783;SRR12166832;SRR12166869;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407","chr8",4737005,"NA","NA","NA","NA","NA","NA","hyper","-","ADAR",27629,0,1.379,"A","NONREP","intronic",18,8,0.308,26,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31,4,0.114,35,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33,8,0.195,41,18,2,0.1,20,31,4,0.114,35,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,45,5,0.1,50,23,4,0.148,27,0,0,0,0,0,0,0,0,0,0,0,0,41,8,0.163,49,42,7,0.143,49,30,4,0.118,34,36,4,0.1,40,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,5,0.2,25,0,0,0,0,0,0,0,0,0,0,0,0,20,3,0.13,23,0,0,0,0,28,7,0.2,35,0,0,0,0,22,10,0.312,32,28,9,0.243,37,25,3,0.107,28,0,0,0,0,28,8,0.222,36,33,13,0.283,46,28,7,0.2,35,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19,3,0.136,22,15,8,0.348,23,0,0,0,0,18,6,0.25,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22,3,0.12,25,38,8,0.174,46,22,3,0.12,25,14,9,0.391,23,55,9,0.141,64,24,4,0.143,28,29,7,0.194,36,30,8,0.211,38,0,0,0,0,0,0,0,0,37,10,0.213,47,22,8,0.267,30,34,8,0.19,42,0,0,0,0,21,8,0.276,29,23,5,0.179,28,35,4,0.103,39,0,0,0,0,"NA","NA","Predicted to act upstream of or within several processes, including learning or memory; mammary gland branching involved in pregnancy; and reproductive structure development. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr8",12408148,"A","G","No","NA","NA","NA",27,14,0.562,0.311,615,290,236,115,851,405,0.155,0.085,0.0255,41,"SRR12165859;SRR12166096;SRR12166268;SRR12166290;SRR12166464;SRR12166510;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167860;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166310;SRR12166331;SRR12166346;SRR12166783;SRR12166924;SRR12166971;SRR12167015;SRR12167177;SRR12167222;SRR12167247;SRR12167304;SRR12167404","chr8",12265657,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",29755,0,0.592,"A,R","ALU","intergenic",16,14,0.467,30,22,5,0.185,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,9,0.375,24,17,7,0.292,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30,9,0.231,39,0,0,0,0,16,4,0.2,20,0,0,0,0,0,0,0,0,52,19,0.268,71,26,6,0.188,32,47,20,0.299,67,12,10,0.455,22,19,3,0.136,22,19,3,0.136,22,15,6,0.286,21,24,11,0.314,35,26,8,0.235,34,23,5,0.179,28,0,0,0,0,0,0,0,0,25,15,0.375,40,22,14,0.389,36,16,5,0.238,21,31,6,0.162,37,27,9,0.25,36,0,0,0,0,26,6,0.188,32,0,0,0,0,16,12,0.429,28,16,12,0.429,28,24,8,0.25,32,16,6,0.273,22,17,4,0.19,21,0,0,0,0,24,9,0.273,33,0,0,0,0,16,4,0.2,20,0,0,0,0,0,0,0,0,18,3,0.143,21,0,0,0,0,32,12,0.273,44,23,7,0.233,30,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,11,0.407,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,6,0.25,24,0,0,0,0,22,11,0.333,33,0,0,0,0,0,0,0,0,0,0,0,0,18,16,0.471,34,16,4,0.2,20,0,0,0,0,21,5,0.192,26,21,11,0.344,32,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29,11,0.275,40,0,0,0,0,0,0,0,0,16,5,0.238,21,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","AluSz","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr8",43021421,"A","G","No","HOOK3","3_prime_UTR_variant","NA",29,24,0.604,0.533,880,680,168,142,1048,822,0.098,0.091,0.6943,53,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166459;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167276;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167869;SRR12167872;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166264;SRR12166310;SRR12166331;SRR12166682;SRR12166736;SRR12166747;SRR12166748;SRR12166832;SRR12166834;SRR12167002;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167304;SRR12167395;SRR12167404","chr8",42876564,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",30747,0,1.664,"A,R","ALU","UTR3",23,3,0.115,26,41,6,0.128,47,29,8,0.216,37,38,5,0.116,43,22,3,0.12,25,29,7,0.194,36,46,6,0.115,52,35,4,0.103,39,0,0,0,0,19,5,0.208,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24,6,0.2,30,0,0,0,0,57,14,0.197,71,27,4,0.129,31,17,5,0.227,22,30,6,0.167,36,28,5,0.152,33,33,6,0.154,39,37,7,0.159,44,32,6,0.158,38,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34,7,0.171,41,18,5,0.217,23,0,0,0,0,24,4,0.143,28,34,7,0.171,41,46,9,0.164,55,24,6,0.2,30,37,6,0.14,43,38,6,0.136,44,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,4,0.182,22,21,3,0.125,24,0,0,0,0,19,5,0.208,24,0,0,0,0,27,3,0.1,30,16,5,0.238,21,22,7,0.241,29,0,0,0,0,22,3,0.12,25,32,7,0.179,39,0,0,0,0,40,6,0.13,46,0,0,0,0,0,0,0,0,0,0,0,0,23,3,0.115,26,17,3,0.15,20,0,0,0,0,21,7,0.25,28,25,4,0.138,29,0,0,0,0,21,3,0.125,24,21,6,0.222,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,4,0.182,22,0,0,0,0,20,5,0.2,25,28,5,0.152,33,37,9,0.196,46,33,4,0.108,37,37,9,0.196,46,35,6,0.146,41,45,16,0.262,61,34,5,0.128,39,0,0,0,0,33,8,0.195,41,0,0,0,0,35,6,0.146,41,38,8,0.174,46,0,0,0,0,0,0,0,0,"NA","NA","Hook proteins are cytosolic coiled-coil proteins that contain conserved N-terminal domains, which attach to microtubules, and more divergent C-terminal domains, which mediate binding to organelles. The Drosophila Hook protein is a component of the endocytic compartment.[supplied by OMIM, Apr 2004]","NA","NA","SINE","Alu","AluSg","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr8",74375184,"A","G","No","GDAP1","processed_transcript","NA",25,18,0.521,0.4,154,111,491,372,645,483,0.396,0.309,0.2873,43,"SRR12165859;SRR12166185;SRR12166187;SRR12166268;SRR12166290;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167207;SRR12167276;SRR12167315;SRR12167396;SRR12167499;SRR12167511;SRR12167685;SRR12167869;SRR12167879;SRR12165815;SRR12166237;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166747;SRR12167002;SRR12167015;SRR12167177;SRR12167222;SRR12167247;SRR12167267;SRR12167279;SRR12167395;SRR12167407;SRR12167468","chr8",75287419,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",23159,0,1.449,"A","ALU","intergenic",4,18,0.818,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,28,0.966,29,3,19,0.864,22,0,0,0,0,0,0,0,0,0,0,0,0,7,22,0.759,29,3,17,0.85,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13,14,0.519,27,4,20,0.833,24,5,19,0.792,24,9,22,0.71,31,4,16,0.8,20,4,16,0.8,20,5,15,0.75,20,6,19,0.76,25,7,21,0.75,28,11,36,0.766,47,8,12,0.6,20,0,0,0,0,0,0,0,0,5,16,0.762,21,7,17,0.708,24,0,0,0,0,8,13,0.619,21,0,0,0,0,10,23,0.697,33,0,0,0,0,3,25,0.893,28,9,32,0.78,41,6,15,0.714,21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7,15,0.682,22,0,0,0,0,0,0,0,0,5,21,0.808,26,0,0,0,0,6,22,0.786,28,0,0,0,0,6,19,0.76,25,0,0,0,0,0,0,0,0,3,20,0.87,23,6,19,0.76,25,14,31,0.689,45,4,23,0.852,27,0,0,0,0,5,20,0.8,25,0,0,0,0,0,0,0,0,0,0,0,0,2,18,0.9,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,17,0.85,20,0,0,0,0,4,21,0.84,25,8,12,0.6,20,0,0,0,0,2,25,0.926,27,8,31,0.795,39,8,19,0.704,27,0,0,0,0,6,24,0.8,30,0,0,0,0,0,0,0,0,0,0,0,0,13,13,0.5,26,0,0,0,0,7,20,0.741,27,6,18,0.75,24,"HP:0001178;HP:0001178;HP:0001178;HP:0001171;HP:0001171;HP:0002495;HP:0002460;HP:0002460;HP:0002460;HP:0002460;HP:0002460;HP:0007328;HP:0007328;HP:0007328;HP:0007267;HP:0007267;HP:0007249;HP:0007230;HP:0007233;HP:0003731;HP:0003731;HP:0003701;HP:0003701;HP:0001270;HP:0001270;HP:0001270;HP:0001270;HP:0001288;HP:0001284;HP:0001284;HP:0001284;HP:0001284;HP:0001284;HP:0001284;HP:0001265;HP:0001265;HP:0033685;HP:0006064;HP:0007340;HP:0002540;HP:0002505;HP:0003803;HP:0012078;HP:0001371;HP:0001371;HP:0000007;HP:0000007;HP:0000007;HP:0000007;HP:0000006;HP:0002650;HP:0002650;HP:0001315;HP:0008994;HP:0008994;HP:0008997;HP:0008997;HP:0008959;HP:0008954;HP:0008935;HP:0006248;HP:0002751;HP:0002751;HP:0002091;HP:0003378;HP:0003376;HP:0003387;HP:0003387;HP:0003383;HP:0003383;HP:0003383;HP:0003382;HP:0003380;HP:0003380;HP:0003380;HP:0011727;HP:0009473;HP:0003484;HP:0003450;HP:0003448;HP:0003447;HP:0003457;HP:0003431;HP:0003431;HP:0003431;HP:0003429;HP:0003445;HP:0003400;HP:0003593;HP:0003593;HP:0003593;HP:0003577;HP:0003547;HP:0007010;HP:0007015;HP:0003693;HP:0003693;HP:0003693;HP:0003693;HP:0003693;HP:0003690;HP:0002359;HP:0002359;HP:0003678;HP:0002317;HP:0002317;HP:0010830;HP:0009830;HP:0007141;HP:0008443;HP:0008443;HP:0007107;HP:0007108;HP:0006858;HP:0006858;HP:0009072;HP:0034045;HP:0006886;HP:0006886;HP:0009053;HP:0009027;HP:0006937;HP:0006937;HP:0006915;HP:0009109;HP:0000762;HP:0000762;HP:0000762;HP:0000765;HP:0000764;HP:0000764;HP:0000764;HP:0011463;HP:0011463;HP:0009130;HP:0000925;HP:0040078;HP:0003202;HP:0003202;HP:0011675;HP:0011096;HP:0011096;HP:0011096;HP:0012391;HP:0001609;HP:0001609;HP:0001609;HP:0002936;HP:0002936;HP:0002936;HP:0002936;HP:0002936;HP:0002936;HP:0001604;HP:0001604;HP:0001604;HP:0031629;HP:0030319;HP:0030237;HP:0030237;HP:0001765;HP:0001765;HP:0001765;HP:0001776;HP:0001760;HP:0001762;HP:0001762;HP:0001762;HP:0001761;HP:0001761;HP:0001761;HP:0001761","Ulnar claw;Ulnar claw;Ulnar claw;Split hand;Split hand;Impaired vibratory sensation;Distal muscle weakness;Distal muscle weakness;Distal muscle weakness;Distal muscle weakness;Distal muscle weakness;Impaired pain sensation;Impaired pain sensation;Impaired pain sensation;Chronic axonal neuropathy;Chronic axonal neuropathy;Decreased number of small peripheral myelinated nerve fibers;Decreased distal sensory nerve action potential;Clusters of axonal regeneration;Quadriceps muscle weakness;Quadriceps muscle weakness;Proximal muscle weakness;Proximal muscle weakness;Motor delay;Motor delay;Motor delay;Motor delay;Gait disturbance;Areflexia;Areflexia;Areflexia;Areflexia;Areflexia;Areflexia;Hyporeflexia;Hyporeflexia;Fiber type grouping;Limited interphalangeal movement;Lower limb muscle weakness;Inability to walk;Loss of ambulation;Type 1 muscle fiber predominance;Motor conduction block;Flexion contracture;Flexion contracture;Autosomal recessive inheritance;Autosomal recessive inheritance;Autosomal recessive inheritance;Autosomal recessive inheritance;Autosomal dominant inheritance;Scoliosis;Scoliosis;Reduced tendon reflexes;Proximal muscle weakness in lower limbs;Proximal muscle weakness in lower limbs;Proximal muscle weakness in upper limbs;Proximal muscle weakness in upper limbs;Distal upper limb muscle weakness;Intrinsic hand muscle atrophy;Generalized neonatal hypotonia;Limited wrist movement;Kyphoscoliosis;Kyphoscoliosis;Restrictive ventilatory defect;Axonal degeneration/regeneration;Steppage gait;Decreased number of large peripheral myelinated nerve fibers;Decreased number of large peripheral myelinated nerve fibers;Onion bulb formation;Onion bulb formation;Onion bulb formation;Hypertrophic nerve changes;Decreased number of peripheral myelinated nerve fibers;Decreased number of peripheral myelinated nerve fibers;Decreased number of peripheral myelinated nerve fibers;Peroneal muscle weakness;Joint contracture of the hand;Upper limb muscle weakness;Axonal regeneration;Decreased sensory nerve conduction velocity;Axonal loss;EMG abnormality;Decreased motor nerve conduction velocity;Decreased motor nerve conduction velocity;Decreased motor nerve conduction velocity;CNS hypomyelination;EMG: neuropathic changes;Basal lamina onion bulb formation;Infantile onset;Infantile onset;Infantile onset;Congenital onset;Shoulder girdle muscle weakness;Poor fine motor coordination;Poor gross motor coordination;Distal amyotrophy;Distal amyotrophy;Distal amyotrophy;Distal amyotrophy;Distal amyotrophy;Limb muscle weakness;Frequent falls;Frequent falls;Rapidly progressive;Unsteady gait;Unsteady gait;Impaired tactile sensation;Peripheral neuropathy;Sensorimotor neuropathy;Neuropathic spinal arthropathy;Neuropathic spinal arthropathy;Segmental peripheral demyelination;Demyelinating peripheral neuropathy;Impaired distal proprioception;Impaired distal proprioception;Decreased Achilles reflex;Angulated muscle fibers;Impaired distal vibration sensation;Impaired distal vibration sensation;Distal lower limb muscle weakness;Foot dorsiflexor weakness;Impaired distal tactile sensation;Impaired distal tactile sensation;Inability to walk by childhood/adolescence;Denervation of the diaphragm;Decreased nerve conduction velocity;Decreased nerve conduction velocity;Decreased nerve conduction velocity;Abnormal thorax morphology;Peripheral axonal degeneration;Peripheral axonal degeneration;Peripheral axonal degeneration;Childhood onset;Childhood onset;Hand muscle atrophy;Abnormality of the vertebral column;Axonal degeneration;Skeletal muscle atrophy;Skeletal muscle atrophy;Arrhythmia;Peripheral demyelination;Peripheral demyelination;Peripheral demyelination;Hyporeflexia of upper limbs;Hoarse voice;Hoarse voice;Hoarse voice;Distal sensory impairment;Distal sensory impairment;Distal sensory impairment;Distal sensory impairment;Distal sensory impairment;Distal sensory impairment;Vocal cord paresis;Vocal cord paresis;Vocal cord paresis;Impaired tandem gait;Weakness of facial musculature;Hand muscle weakness;Hand muscle weakness;Hammertoe;Hammertoe;Hammertoe;Bilateral talipes equinovarus;Abnormal foot morphology;Talipes equinovarus;Talipes equinovarus;Talipes equinovarus;Pes cavus;Pes cavus;Pes cavus;Pes cavus","This gene encodes a member of the ganglioside-induced differentiation-associated protein family, which may play a role in a signal transduction pathway during neuronal development. Mutations in this gene have been associated with various forms of Charcot-Marie-Tooth Disease and neuropathy. Two transcript variants encoding different isoforms and a noncoding variant have been identified for this gene. [provided by RefSeq, Feb 2012]","NA","NA","SINE","Alu","AluSz","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr9",65657935,"A","G","No","NA","NA","NA",29,13,0.604,0.289,644,245,266,105,910,350,0.18,0.085,0.0045,42,"SRR12165859;SRR12166096;SRR12166221;SRR12166268;SRR12166290;SRR12166444;SRR12166459;SRR12166464;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167276;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166264;SRR12166310;SRR12166331;SRR12166747;SRR12166748;SRR12166783;SRR12166971;SRR12166978;SRR12167002;SRR12167206;SRR12167404","NA","NA","NA","NA","NA","NA","NA","NA","hyper","+","ADAR",435,0,1.557,"NA","NA","NA",24,5,0.172,29,24,6,0.2,30,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,9,0.391,23,17,7,0.292,24,14,7,0.333,21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13,10,0.435,23,33,9,0.214,42,25,8,0.242,33,0,0,0,0,0,0,0,0,16,6,0.273,22,34,9,0.209,43,24,5,0.172,29,14,7,0.333,21,23,16,0.41,39,15,15,0.5,30,0,0,0,0,17,15,0.469,32,33,15,0.312,48,0,0,0,0,13,11,0.458,24,12,8,0.4,20,0,0,0,0,0,0,0,0,27,11,0.289,38,20,9,0.31,29,22,6,0.214,28,30,9,0.231,39,31,5,0.139,36,31,9,0.225,40,32,17,0.347,49,25,10,0.286,35,0,0,0,0,21,10,0.323,31,0,0,0,0,17,6,0.261,23,23,6,0.207,29,0,0,0,0,24,12,0.333,36,0,0,0,0,24,3,0.111,27,0,0,0,0,13,8,0.381,21,21,4,0.16,25,0,0,0,0,20,6,0.231,26,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,8,0.364,22,21,5,0.192,26,26,18,0.409,44,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,5,0.227,22,15,11,0.423,26,22,7,0.241,29,0,0,0,0,0,0,0,0,0,0,0,0,13,7,0.35,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,11,0.423,26,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","AluSp","NA","6.97545e-06","NA","NA","NA","NA","NA","NA"]
["chr9",129923337,"T","C","No","FNBP1","intron_variant","NA",24,13,0.5,0.289,606,300,157,75,763,375,0.104,0.056,0.0314,37,"SRR12166108;SRR12166184;SRR12166187;SRR12166190;SRR12166268;SRR12166290;SRR12166435;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167145;SRR12167276;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167860;SRR12167867;SRR12167869;SRR12167879;SRR12165815;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166659;SRR12166748;SRR12166783;SRR12167270;SRR12167280;SRR12167304;SRR12167407;SRR12167468","chr9",132685616,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",49720,0,1.664,"A,R,D","ALU","intronic",0,0,0,0,0,0,0,0,22,4,0.154,26,0,0,0,0,18,2,0.1,20,0,0,0,0,30,7,0.189,37,24,4,0.143,28,0,0,0,0,0,0,0,0,56,12,0.176,68,17,6,0.261,23,0,0,0,0,0,0,0,0,0,0,0,0,32,5,0.135,37,0,0,0,0,0,0,0,0,0,0,0,0,13,7,0.35,20,22,4,0.154,26,0,0,0,0,29,5,0.147,34,15,9,0.375,24,23,4,0.148,27,34,5,0.128,39,0,0,0,0,0,0,0,0,0,0,0,0,28,12,0.3,40,0,0,0,0,18,5,0.217,23,0,0,0,0,0,0,0,0,0,0,0,0,17,7,0.292,24,28,10,0.263,38,21,12,0.364,33,29,7,0.194,36,29,7,0.194,36,0,0,0,0,31,4,0.114,35,0,0,0,0,21,3,0.125,24,26,7,0.212,33,0,0,0,0,0,0,0,0,23,9,0.281,32,0,0,0,0,30,9,0.231,39,0,0,0,0,0,0,0,0,0,0,0,0,19,3,0.136,22,28,7,0.2,35,31,7,0.184,38,27,8,0.229,35,0,0,0,0,0,0,0,0,17,3,0.15,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,3,0.143,21,37,11,0.229,48,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,5,0.238,21,0,0,0,0,19,8,0.296,27,18,4,0.182,22,0,0,0,0,0,0,0,0,0,0,0,0,22,5,0.185,27,18,2,0.1,20,"NA","NA","The protein encoded by this gene is a member of the formin-binding-protein family. The protein contains an N-terminal Fer/Cdc42-interacting protein 4 (CIP4) homology (FCH) domain followed by a coiled-coil domain, a proline-rich motif, a second coiled-coil domain, a Rho family protein-binding domain (RBD), and a C-terminal SH3 domain. This protein binds sorting nexin 2 (SNX2), tankyrase (TNKS), and dynamin; an interaction between this protein and formin has not been demonstrated yet in human. [provided by RefSeq, Jul 2008]","NA","NA","SINE","Alu","AluSc","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr10",15076736,"T","C","No","ACBD7","3_prime_UTR_variant","NA",21,30,0.438,0.667,1502,2024,241,338,1743,2362,0.062,0.099,0.0218,51,"SRR12166096;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166510;SRR12166753;SRR12166775;SRR12167104;SRR12167393;SRR12167397;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166682;SRR12166740;SRR12166747;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167270;SRR12167280;SRR12167407;SRR12167468","chr10",15118735,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",2387,0,1.842,"A,R","ALU","UTR3",0,0,0,0,75,11,0.128,86,0,0,0,0,0,0,0,0,33,10,0.233,43,32,4,0.111,36,56,9,0.138,65,93,15,0.139,108,46,13,0.22,59,32,5,0.135,37,47,8,0.145,55,74,9,0.108,83,0,0,0,0,0,0,0,0,0,0,0,0,35,6,0.146,41,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,77,13,0.144,90,0,0,0,0,51,7,0.121,58,0,0,0,0,84,12,0.125,96,0,0,0,0,0,0,0,0,171,20,0.105,191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,140,16,0.103,156,0,0,0,0,180,37,0.171,217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,60,9,0.13,69,35,6,0.146,41,72,12,0.143,84,66,13,0.165,79,0,0,0,0,0,0,0,0,43,6,0.122,49,0,0,0,0,49,7,0.125,56,47,10,0.175,57,53,13,0.197,66,0,0,0,0,36,8,0.182,44,65,8,0.11,73,79,12,0.132,91,77,9,0.105,86,63,8,0.113,71,23,6,0.207,29,0,0,0,0,38,6,0.136,44,0,0,0,0,31,8,0.205,39,35,4,0.103,39,0,0,0,0,56,12,0.176,68,63,9,0.125,72,47,8,0.145,55,47,8,0.145,55,0,0,0,0,42,6,0.125,48,34,11,0.244,45,37,5,0.119,42,49,9,0.155,58,0,0,0,0,54,6,0.1,60,0,0,0,0,42,6,0.125,48,42,13,0.236,55,114,16,0.123,130,106,15,0.124,121,98,20,0.169,118,0,0,0,0,0,0,0,0,154,24,0.135,178,0,0,0,0,120,15,0.111,135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,181,28,0.134,209,142,28,0.165,170,"NA","NA","Predicted to enable fatty-acyl-CoA binding activity and lipid binding activity. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSx","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr10",81901486,"A","G","No","NRG3","intron_variant","NA",28,24,0.583,0.533,120,97,837,643,957,740,0.509,0.463,0.6196,52,"SRR12165859;SRR12166108;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167393;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167862;SRR12167867;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166748;SRR12166783;SRR12166832;SRR12166967;SRR12166978;SRR12167002;SRR12167177;SRR12167222;SRR12167247;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407","chr10",83661242,"NA","NA","NA","[\"CEBPB\"]","NA","NA","regular_and_hyper","+","ADAR",352,0,1.95,"A,R","ALU","intronic",3,36,0.923,39,0,0,0,0,4,16,0.8,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9,25,0.735,34,2,23,0.92,25,10,20,0.667,30,4,16,0.8,20,0,0,0,0,7,34,0.829,41,5,29,0.853,34,3,35,0.921,38,8,37,0.822,45,3,36,0.923,39,4,53,0.93,57,7,50,0.877,57,0,21,1,21,4,23,0.852,27,2,22,0.917,24,5,32,0.865,37,2,23,0.92,25,0,0,0,0,0,0,0,0,4,30,0.882,34,0,0,0,0,0,44,1,44,3,41,0.932,44,8,37,0.822,45,3,29,0.906,32,2,19,0.905,21,0,0,0,0,9,28,0.757,37,5,17,0.773,22,0,0,0,0,0,0,0,0,1,31,0.969,32,3,30,0.909,33,0,0,0,0,3,34,0.919,37,0,0,0,0,7,39,0.848,46,7,26,0.788,33,6,24,0.8,30,1,21,0.955,22,4,24,0.857,28,4,40,0.909,44,7,20,0.741,27,0,0,0,0,2,22,0.917,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,25,0.962,26,10,25,0.714,35,2,18,0.9,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,21,0.84,25,0,0,0,0,2,36,0.947,38,3,22,0.88,25,0,0,0,0,0,0,0,0,1,28,0.966,29,0,0,0,0,4,20,0.833,24,2,19,0.905,21,0,0,0,0,0,0,0,0,2,26,0.929,28,3,25,0.893,28,5,43,0.896,48,0,0,0,0,8,19,0.704,27,7,25,0.781,32,2,41,0.953,43,0,0,0,0,"NA","NA","This gene is a member of the neuregulin gene family. This gene family encodes ligands for the transmembrane tyrosine kinase receptors ERBB3 and ERBB4 - members of the epidermal growth factor receptor family. Ligand binding activates intracellular signaling cascades and the induction of cellular responses including proliferation, migration, differentiation, and survival or apoptosis. This gene encodes neuregulin 3 (NRG3). NRG3 has been shown to activate the tyrosine phosphorylation of its cognate receptor, ERBB4, and is thought to influence neuroblast proliferation, migration and differentiation by signalling through ERBB4. NRG3 also promotes mammary differentiation during embryogenesis. Linkage studies have implicated this gene as a susceptibility locus for schizophrenia and schizoaffective disorder. Alternative splicing results in multiple transcript variants encoding distinct isoforms. Additional transcript variants have been described but their biological validity has not been verified.[provided by RefSeq, Sep 2009]","NA","NA","SINE","Alu","AluJr","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr10",87047872,"T","C","No","NA","NA","NA",25,22,0.521,0.489,563,286,653,469,1216,755,0.28,0.304,0.7052,47,"SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166187;SRR12166268;SRR12166290;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167276;SRR12167393;SRR12167396;SRR12167397;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12165815;SRR12166237;SRR12166310;SRR12166346;SRR12166659;SRR12166682;SRR12166748;SRR12166832;SRR12166967;SRR12167002;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr10",88807629,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",90352,0,1.557,"A,R","ALU","intergenic",0,0,0,0,30,51,0.63,81,51,61,0.545,112,81,84,0.509,165,4,23,0.852,27,0,0,0,0,11,21,0.656,32,0,0,0,0,0,0,0,0,0,0,0,0,23,20,0.465,43,9,19,0.679,28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,25,0.61,41,14,15,0.517,29,23,35,0.603,58,8,12,0.6,20,0,0,0,0,15,12,0.444,27,0,0,0,0,0,0,0,0,17,9,0.346,26,17,18,0.514,35,33,30,0.476,63,24,26,0.52,50,30,33,0.524,63,0,0,0,0,11,13,0.542,24,0,0,0,0,0,0,0,0,18,10,0.357,28,22,21,0.488,43,18,41,0.695,59,0,0,0,0,12,19,0.613,31,32,26,0.448,58,30,18,0.375,48,0,0,0,0,0,0,0,0,14,11,0.44,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10,18,0.643,28,0,0,0,0,12,19,0.613,31,0,0,0,0,0,0,0,0,10,18,0.643,28,0,0,0,0,0,0,0,0,10,17,0.63,27,0,0,0,0,20,22,0.524,42,8,14,0.636,22,0,0,0,0,0,0,0,0,0,0,0,0,11,9,0.45,20,0,0,0,0,12,18,0.6,30,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,20,0.833,24,0,0,0,0,0,0,0,0,5,17,0.773,22,0,0,0,0,0,0,0,0,0,0,0,0,12,16,0.571,28,7,19,0.731,26,10,25,0.714,35,14,22,0.611,36,20,49,0.71,69,8,23,0.742,31,22,28,0.56,50,12,11,0.478,23,0,0,0,0,19,17,0.472,36,17,17,0.5,34,26,38,0.594,64,17,32,0.653,49,"NA","NA","NA","NA","NA","SINE","Alu","AluSx","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr11",767988,"T","C","No","GATD1","3_prime_UTR_variant","NA",36,15,0.75,0.333,501,150,1043,304,1544,454,0.508,0.225,0,51,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166192;SRR12166268;SRR12166290;SRR12166387;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167307;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12165815;SRR12166237;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166747;SRR12166748;SRR12166783;SRR12167247;SRR12167279;SRR12167407;SRR12167468","chr11",767988,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",2915,0,1.95,"A,R,D","ALU","UTR3",10,10,0.5,20,11,35,0.761,46,8,16,0.667,24,8,17,0.68,25,7,16,0.696,23,15,34,0.694,49,12,26,0.684,38,6,25,0.806,31,16,28,0.636,44,0,0,0,0,23,50,0.685,73,21,40,0.656,61,0,0,0,0,11,16,0.593,27,0,0,0,0,8,33,0.805,41,0,0,0,0,35,41,0.539,76,17,28,0.622,45,34,86,0.717,120,7,22,0.759,29,0,0,0,0,15,35,0.7,50,5,19,0.792,24,24,31,0.564,55,8,16,0.667,24,15,27,0.643,42,0,0,0,0,12,22,0.647,34,21,37,0.638,58,0,0,0,0,0,0,0,0,5,33,0.868,38,0,0,0,0,0,0,0,0,0,0,0,0,4,25,0.862,29,9,15,0.625,24,16,25,0.61,41,10,29,0.744,39,13,25,0.658,38,23,34,0.596,57,10,20,0.667,30,17,33,0.66,50,11,47,0.81,58,20,33,0.623,53,14,14,0.5,28,0,0,0,0,0,0,0,0,15,24,0.615,39,0,0,0,0,10,24,0.706,34,0,0,0,0,9,13,0.591,22,9,24,0.727,33,8,29,0.784,37,26,22,0.458,48,9,16,0.64,25,0,0,0,0,7,22,0.759,29,0,0,0,0,0,0,0,0,0,0,0,0,8,22,0.733,30,12,11,0.478,23,7,17,0.708,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,19,0.826,23,0,0,0,0,0,0,0,0,5,17,0.773,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10,16,0.615,26,11,28,0.718,39,"NA","NA","Located in extracellular exosome. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSx1","rs1253892427","6.99859e-06","NA","NA","NA","NA","NA","NA"]
["chr11",119000580,"A","G","No","CCDC84","intron_variant","NA",36,16,0.75,0.356,810,316,415,152,1225,468,0.258,0.115,0.0001,52,"SRR12165859;SRR12166096;SRR12166184;SRR12166185;SRR12166187;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167315;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166783;SRR12166924;SRR12167015;SRR12167177;SRR12167270;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr11",118871290,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1776,1,0.985,"A,R","ALU","intronic",13,11,0.458,24,28,5,0.152,33,0,0,0,0,0,0,0,0,15,8,0.348,23,15,7,0.318,22,15,5,0.25,20,0,0,0,0,0,0,0,0,0,0,0,0,39,23,0.371,62,18,13,0.419,31,0,0,0,0,0,0,0,0,0,0,0,0,23,10,0.303,33,0,0,0,0,46,9,0.164,55,30,15,0.333,45,32,13,0.289,45,18,18,0.5,36,16,9,0.36,25,17,14,0.452,31,18,14,0.438,32,27,14,0.341,41,23,18,0.439,41,13,7,0.35,20,14,7,0.333,21,36,13,0.265,49,34,13,0.277,47,17,11,0.393,28,23,14,0.378,37,19,5,0.208,24,16,7,0.304,23,0,0,0,0,25,9,0.265,34,28,13,0.317,41,18,16,0.471,34,29,19,0.396,48,26,11,0.297,37,24,11,0.314,35,34,10,0.227,44,0,0,0,0,18,10,0.357,28,15,15,0.5,30,0,0,0,0,11,11,0.5,22,17,7,0.292,24,0,0,0,0,26,13,0.333,39,0,0,0,0,27,9,0.25,36,0,0,0,0,0,0,0,0,22,13,0.371,35,31,15,0.326,46,31,11,0.262,42,9,13,0.591,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23,12,0.343,35,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,8,0.348,23,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13,9,0.409,22,17,5,0.227,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,5,0.227,22,0,0,0,0,0,0,0,0,19,4,0.174,23,0,0,0,0,15,6,0.286,21,14,6,0.3,20,19,15,0.441,34,18,8,0.308,26,"NA","NA","NA","NA","NA","SINE","Alu","AluSq","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr11",119001829,"A","G","No","CCDC84","intron_variant","NA",34,17,0.708,0.378,392,156,805,346,1197,502,0.479,0.262,0.0021,51,"SRR12165859;SRR12166096;SRR12166185;SRR12166187;SRR12166192;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167276;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166747;SRR12166748;SRR12166783;SRR12166924;SRR12167206;SRR12167279;SRR12167304;SRR12167395;SRR12167404;SRR12167407","chr11",118872539,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",527,0,1.449,"A,R,D","REP","intronic",4,20,0.833,24,9,15,0.625,24,0,0,0,0,0,0,0,0,0,0,0,0,11,28,0.718,39,9,17,0.654,26,0,0,0,0,6,16,0.727,22,0,0,0,0,10,33,0.767,43,5,19,0.792,24,0,0,0,0,0,0,0,0,0,0,0,0,14,23,0.622,37,10,12,0.545,22,24,34,0.586,58,14,31,0.689,45,0,0,0,0,10,22,0.688,32,0,0,0,0,17,22,0.564,39,15,21,0.583,36,8,28,0.778,36,14,25,0.641,39,6,28,0.824,34,9,13,0.591,22,18,39,0.684,57,18,22,0.55,40,0,0,0,0,10,20,0.667,30,12,21,0.636,33,0,0,0,0,8,19,0.704,27,5,30,0.857,35,10,32,0.762,42,13,31,0.705,44,14,32,0.696,46,16,21,0.568,37,12,21,0.636,33,21,26,0.553,47,0,0,0,0,11,28,0.718,39,14,24,0.632,38,0,0,0,0,5,15,0.75,20,10,17,0.63,27,0,0,0,0,17,34,0.667,51,0,0,0,0,0,0,0,0,7,13,0.65,20,10,15,0.6,25,11,23,0.676,34,12,29,0.707,41,9,21,0.7,30,7,15,0.682,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6,21,0.778,27,6,15,0.714,21,10,24,0.706,34,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11,18,0.621,29,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6,20,0.769,26,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9,19,0.679,28,0,0,0,0,5,18,0.783,23,0,0,0,0,6,16,0.727,22,7,17,0.708,24,17,28,0.622,45,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","FLAM_A","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr12",68843730,"A","G","No","MDM2","3_prime_UTR_variant","NA",23,24,0.479,0.533,868,1181,161,218,1029,1399,0.079,0.086,0.7183,47,"SRR12165859;SRR12166108;SRR12166110;SRR12166187;SRR12166221;SRR12166435;SRR12166459;SRR12166510;SRR12166573;SRR12166759;SRR12166775;SRR12167000;SRR12167104;SRR12167141;SRR12167207;SRR12167276;SRR12167396;SRR12167397;SRR12167685;SRR12167862;SRR12167867;SRR12167875;SRR12167879;SRR12166246;SRR12166310;SRR12166331;SRR12166554;SRR12166659;SRR12166740;SRR12166747;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167267;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167407;SRR12167468","chr12",69237510,"NA","NA","NA","[\"POLR2A\"]","NA","NA","regular","+","ADAR",17435,0,1.379,"A,R,D","NONREP","UTR3",36,6,0.143,42,0,0,0,0,60,17,0.221,77,42,6,0.125,48,0,0,0,0,0,0,0,0,23,4,0.148,27,0,0,0,0,0,0,0,0,25,5,0.167,30,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19,4,0.174,23,0,0,0,0,18,7,0.28,25,0,0,0,0,0,0,0,0,45,5,0.1,50,43,7,0.14,50,0,0,0,0,50,7,0.123,57,20,5,0.2,25,0,0,0,0,79,9,0.102,88,28,5,0.152,33,22,6,0.214,28,0,0,0,0,83,14,0.144,97,25,4,0.138,29,0,0,0,0,0,0,0,0,0,0,0,0,78,12,0.133,90,51,10,0.164,61,0,0,0,0,0,0,0,0,21,4,0.16,25,0,0,0,0,0,0,0,0,31,8,0.205,39,21,8,0.276,29,0,0,0,0,0,0,0,0,19,4,0.174,23,29,4,0.121,33,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37,6,0.14,43,0,0,0,0,40,8,0.167,48,0,0,0,0,35,5,0.125,40,0,0,0,0,19,5,0.208,24,78,13,0.143,91,0,0,0,0,0,0,0,0,28,5,0.152,33,28,4,0.125,32,0,0,0,0,0,0,0,0,0,0,0,0,20,5,0.2,25,26,6,0.188,32,35,9,0.205,44,26,5,0.161,31,22,4,0.154,26,28,6,0.176,34,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,40,14,0.259,54,91,11,0.108,102,101,22,0.179,123,54,12,0.182,66,0,0,0,0,71,14,0.165,85,0,0,0,0,83,14,0.144,97,54,10,0.156,64,58,10,0.147,68,0,0,0,0,73,9,0.11,82,0,0,0,0,94,15,0.138,109,40,6,0.13,46,"HP:0002579;HP:0007378;HP:0000089;HP:0000083;HP:0002664;HP:0000007;HP:0002669;HP:0002665;HP:0012189;HP:0012174;HP:0000160;HP:0012125;HP:0012126;HP:0000135;HP:0001482;HP:0100526;HP:0009592;HP:0002216;HP:0002225;HP:0100768;HP:0009726;HP:0100743;HP:0004808;HP:0100605;HP:0200063;HP:0100615;HP:0010788;HP:0001909;HP:0004322;HP:0003002;HP:0003003;HP:0100006;HP:0000822;HP:0012288;HP:0030070;HP:0012211;HP:0002894;HP:0002890;HP:0002888;HP:0002885;HP:0002861;HP:0002859;HP:0002863;HP:0001620;HP:0000446;HP:0006744;HP:0006721;HP:0012539;HP:0030392","Gastrointestinal dysmotility;Neoplasm of the gastrointestinal tract;Renal hypoplasia;Renal insufficiency;Neoplasm;Autosomal recessive inheritance;Osteosarcoma;Lymphoma;Hodgkin lymphoma;Glioblastoma multiforme;Narrow mouth;Prostate cancer;Stomach cancer;Hypogonadism;Subcutaneous nodule;Neoplasm of the lung;Astrocytoma;Premature graying of hair;Sparse pubic hair;Choriocarcinoma;Renal neoplasm;Neoplasm of the rectum;Acute myeloid leukemia;Neoplasm of the larynx;Colorectal polyposis;Ovarian neoplasm;Testicular neoplasm;Leukemia;Short stature;Breast carcinoma;Colon cancer;Neoplasm of the central nervous system;Hypertension;Neoplasm of head and neck;Central primitive neuroectodermal tumor;Abnormal renal physiology;Neoplasm of the pancreas;Thyroid carcinoma;Ependymoma;Medulloblastoma;Melanoma;Rhabdomyosarcoma;Myelodysplasia;High pitched voice;Narrow nasal bridge;Adrenocortical carcinoma;Acute lymphoblastic leukemia;Non-Hodgkin lymphoma;Choroid plexus carcinoma","This gene encodes a nuclear-localized E3 ubiquitin ligase. The encoded protein can promote tumor formation by targeting tumor suppressor proteins, such as p53, for proteasomal degradation. This gene is itself transcriptionally-regulated by p53. Overexpression or amplification of this locus is detected in a variety of different cancers. There is a pseudogene for this gene on chromosome 2. Alternative splicing results in a multitude of transcript variants, many of which may be expressed only in tumor cells. [provided by RefSeq, Jun 2013]","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr12",116851593,"A","G","No","RNFT2","intron_variant","NA",44,39,0.917,0.867,732,534,1292,956,2024,1490,0.581,0.55,0.4959,83,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166387;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165792;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr12",117289398,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",24397,0,1.95,"A,R,D","ALU","UTR3",10,22,0.688,32,18,24,0.571,42,18,11,0.379,29,15,15,0.5,30,13,22,0.629,35,9,25,0.735,34,16,18,0.529,34,15,20,0.571,35,11,30,0.732,41,8,26,0.765,34,21,46,0.687,67,16,25,0.61,41,0,0,0,0,9,14,0.609,23,0,0,0,0,11,26,0.703,37,0,0,0,0,17,27,0.614,44,12,37,0.755,49,11,29,0.725,40,19,37,0.661,56,15,25,0.625,40,21,36,0.632,57,29,22,0.431,51,24,56,0.7,80,24,44,0.647,68,18,49,0.731,67,16,13,0.448,29,21,31,0.596,52,38,45,0.542,83,21,25,0.543,46,12,34,0.739,46,0,0,0,0,12,18,0.6,30,14,22,0.611,36,12,35,0.745,47,12,21,0.636,33,12,34,0.739,46,28,49,0.636,77,23,36,0.61,59,28,31,0.525,59,21,38,0.644,59,12,20,0.625,32,18,31,0.633,49,15,46,0.754,61,14,32,0.696,46,7,22,0.759,29,16,23,0.59,39,7,14,0.667,21,16,55,0.775,71,0,0,0,0,20,32,0.615,52,11,35,0.761,46,12,24,0.667,36,26,26,0.5,52,20,21,0.512,41,26,36,0.581,62,22,38,0.633,60,12,15,0.556,27,11,12,0.522,23,11,12,0.522,23,0,0,0,0,8,13,0.619,21,7,27,0.794,34,13,23,0.639,36,10,19,0.655,29,6,27,0.818,33,8,29,0.784,37,15,18,0.545,33,7,17,0.708,24,0,0,0,0,0,0,0,0,8,13,0.619,21,9,17,0.654,26,0,0,0,0,10,14,0.583,24,12,18,0.6,30,8,16,0.667,24,8,31,0.795,39,11,17,0.607,28,17,30,0.638,47,10,19,0.655,29,9,23,0.719,32,10,18,0.643,28,14,11,0.44,25,21,32,0.604,53,12,19,0.613,31,11,32,0.744,43,0,0,0,0,19,30,0.612,49,15,24,0.615,39,39,83,0.68,122,23,16,0.41,39,"NA","NA","Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of ERAD pathway and protein ubiquitination. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSx1","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr13",52689793,"A","G","No","SUGT1","3_prime_UTR_variant","NA",44,41,0.917,0.911,1754,1690,490,434,2244,2124,0.202,0.185,0.3637,85,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166387;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr13",53263928,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",32811,0,1.449,"A,R,D","ALU","UTR3",27,7,0.206,34,66,19,0.224,85,55,21,0.276,76,31,19,0.38,50,29,11,0.275,40,24,11,0.314,35,59,19,0.244,78,45,17,0.274,62,17,9,0.346,26,27,5,0.156,32,59,15,0.203,74,40,7,0.149,47,0,0,0,0,26,7,0.212,33,0,0,0,0,31,7,0.184,38,24,6,0.2,30,35,19,0.352,54,33,6,0.154,39,39,17,0.304,56,48,6,0.111,54,43,6,0.122,49,44,7,0.137,51,33,8,0.195,41,26,6,0.188,32,29,11,0.275,40,78,19,0.196,97,20,11,0.355,31,39,8,0.17,47,60,9,0.13,69,72,12,0.143,84,0,0,0,0,34,5,0.128,39,0,0,0,0,59,16,0.213,75,63,18,0.222,81,52,21,0.288,73,38,14,0.269,52,51,13,0.203,64,54,11,0.169,65,50,12,0.194,62,27,7,0.206,34,33,10,0.233,43,30,12,0.286,42,26,7,0.212,33,29,8,0.216,37,22,5,0.185,27,27,6,0.182,33,0,0,0,0,35,5,0.125,40,21,4,0.16,25,46,8,0.148,54,29,11,0.275,40,33,10,0.233,43,35,5,0.125,40,48,7,0.127,55,51,20,0.282,71,43,11,0.204,54,26,5,0.161,31,114,37,0.245,151,35,11,0.239,46,36,12,0.25,48,29,11,0.275,40,25,3,0.107,28,40,7,0.149,47,33,13,0.283,46,34,12,0.261,46,0,0,0,0,26,4,0.133,30,35,6,0.146,41,21,10,0.323,31,28,6,0.176,34,18,8,0.308,26,24,6,0.2,30,24,6,0.2,30,39,8,0.17,47,43,5,0.104,48,31,4,0.114,35,22,12,0.353,34,62,19,0.235,81,56,13,0.188,69,33,11,0.25,44,45,19,0.297,64,0,0,0,0,62,14,0.184,76,60,10,0.143,70,54,9,0.143,63,53,12,0.185,65,0,0,0,0,50,10,0.167,60,37,13,0.26,50,93,17,0.155,110,61,20,0.247,81,"NA","NA","This gene encodes a highly conserved nuclear protein involved in kinetochore function and required for the G1/S and G2/M transitions. This protein interacts with heat shock protein 90. Alternative splicing results in multiple transcript variants. Pseudogenes for this gene have been defined on several different chromosomes. [provided by RefSeq, Mar 2016]","NA","NA","SINE","Alu","AluSx","NA","NA","NA","NA","NA","NA","lincRNA","TCONS_00021656:1"]
["chr13",67032212,"T","C","No","PCDH9","intron_variant","NA",39,31,0.812,0.689,223,149,1050,796,1273,945,0.669,0.584,0.2683,70,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166268;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167395;SRR12167404;SRR12167407","chr13",67606344,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",134906,0,1.95,"A","ALU","intronic",3,22,0.88,25,13,29,0.69,42,12,23,0.657,35,13,17,0.567,30,0,20,1,20,4,25,0.862,29,1,43,0.977,44,1,20,0.952,21,0,0,0,0,0,0,0,0,9,37,0.804,46,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,30,0.938,32,5,17,0.773,22,1,23,0.958,24,6,28,0.824,34,8,23,0.742,31,1,36,0.973,37,6,37,0.86,43,6,30,0.833,36,8,28,0.778,36,7,27,0.794,34,8,41,0.837,49,0,33,1,33,8,19,0.704,27,5,28,0.848,33,11,17,0.607,28,4,20,0.833,24,4,21,0.84,25,0,0,0,0,0,0,0,0,5,17,0.773,22,7,29,0.806,36,5,35,0.875,40,4,51,0.927,55,9,37,0.804,46,8,23,0.742,31,5,18,0.783,23,8,22,0.733,30,9,27,0.75,36,4,25,0.862,29,1,26,0.963,27,0,0,0,0,4,27,0.871,31,8,19,0.704,27,0,0,0,0,2,27,0.931,29,0,0,0,0,5,37,0.881,42,3,26,0.897,29,5,19,0.792,24,3,30,0.909,33,5,34,0.872,39,8,32,0.8,40,3,31,0.912,34,0,0,0,0,11,28,0.718,39,6,19,0.76,25,0,0,0,0,0,0,0,0,0,0,0,0,7,26,0.788,33,4,32,0.889,36,3,30,0.909,33,5,23,0.821,28,2,22,0.917,24,3,19,0.864,22,0,0,0,0,7,22,0.759,29,3,26,0.897,29,2,21,0.913,23,0,23,1,23,6,28,0.824,34,4,26,0.867,30,4,16,0.8,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23,1,23,7,31,0.816,38,5,20,0.8,25,8,29,0.784,37,3,18,0.857,21,0,0,0,0,0,0,0,0,9,23,0.719,32,4,17,0.81,21,12,38,0.76,50,0,0,0,0,"NA","NA","This gene encodes a member of the protocadherin family, and cadherin superfamily, of transmembrane proteins containing cadherin domains. These proteins mediate cell adhesion in neural tissues in the presence of calcium. The encoded protein may be involved in signaling at neuronal synaptic junctions. Sharing a characteristic with other protocadherin genes, this gene has a notably large exon that encodes multiple cadherin domains and a transmembrane region. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Nov 2012]","NA","NA","SINE","Alu","AluJb","NA","6.97915e-06","NA","NA","NA","NA","NA","NA"]
["chr13",107758621,"T","C","No","FAM155A","intron_variant","NA",37,26,0.771,0.578,713,438,522,349,1235,787,0.328,0.258,0.1331,63,"SRR12165859;SRR12166096;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166268;SRR12166290;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165792;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166736;SRR12166783;SRR12166967;SRR12166978;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167407;SRR12167468","chr13",108410969,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",64513,0,1.842,"A,R","ALU","intronic",12,19,0.613,31,28,8,0.222,36,0,0,0,0,0,0,0,0,17,12,0.414,29,14,22,0.611,36,15,16,0.516,31,15,16,0.516,31,0,0,0,0,0,0,0,0,32,20,0.385,52,21,8,0.276,29,0,0,0,0,0,0,0,0,0,0,0,0,21,18,0.462,39,0,0,0,0,0,0,0,0,24,16,0.4,40,17,17,0.5,34,30,11,0.268,41,9,12,0.571,21,29,21,0.42,50,20,15,0.429,35,24,7,0.226,31,29,16,0.356,45,15,20,0.571,35,19,20,0.513,39,24,10,0.294,34,18,13,0.419,31,21,12,0.364,33,19,4,0.174,23,0,0,0,0,0,0,0,0,15,10,0.4,25,24,14,0.368,38,19,28,0.596,47,20,14,0.412,34,19,15,0.441,34,20,16,0.444,36,25,12,0.324,37,23,9,0.281,32,22,14,0.389,36,12,12,0.5,24,11,9,0.45,20,11,9,0.45,20,10,10,0.5,20,9,17,0.654,26,14,14,0.5,28,20,14,0.412,34,0,0,0,0,15,16,0.516,31,6,15,0.714,21,11,16,0.593,27,13,9,0.409,22,16,25,0.61,41,29,21,0.42,50,18,13,0.419,31,0,0,0,0,26,22,0.458,48,0,0,0,0,14,9,0.391,23,0,0,0,0,0,0,0,0,0,0,0,0,15,10,0.4,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,11,0.423,26,0,0,0,0,20,16,0.444,36,0,0,0,0,9,15,0.625,24,12,8,0.4,20,19,14,0.424,33,17,8,0.32,25,0,0,0,0,18,14,0.438,32,11,11,0.5,22,0,0,0,0,22,11,0.333,33,17,13,0.433,30,15,10,0.4,25,0,0,0,0,17,11,0.393,28,0,0,0,0,27,8,0.229,35,22,15,0.405,37,"NA","NA","NA","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr14",64471282,"A","G","No","ZBTB25","intron_variant","NA",28,33,0.583,0.733,666,665,305,362,971,1027,0.185,0.253,0.0733,61,"SRR12166096;SRR12166185;SRR12166187;SRR12166190;SRR12166268;SRR12166290;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167145;SRR12167207;SRR12167393;SRR12167396;SRR12167397;SRR12167511;SRR12167685;SRR12167727;SRR12167867;SRR12167869;SRR12167872;SRR12165815;SRR12166237;SRR12166264;SRR12166310;SRR12166321;SRR12166346;SRR12166659;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166832;SRR12166834;SRR12166904;SRR12166910;SRR12166967;SRR12166971;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr14",64938000,"NA","NA","NA","NA","NA","NA","regular","+","ADAR",1234,0,1.95,"A,R,D","ALU","UTR3",0,0,0,0,31,10,0.244,41,0,0,0,0,0,0,0,0,0,0,0,0,21,8,0.276,29,30,18,0.375,48,29,12,0.293,41,0,0,0,0,0,0,0,0,34,17,0.333,51,18,8,0.308,26,0,0,0,0,0,0,0,0,0,0,0,0,13,9,0.409,22,0,0,0,0,0,0,0,0,29,4,0.121,33,13,7,0.35,20,23,16,0.41,39,29,14,0.326,43,35,7,0.167,42,18,11,0.379,29,40,16,0.286,56,20,4,0.167,24,33,20,0.377,53,13,9,0.409,22,0,0,0,0,26,8,0.235,34,20,17,0.459,37,0,0,0,0,0,0,0,0,0,0,0,0,14,13,0.481,27,15,11,0.423,26,20,9,0.31,29,0,0,0,0,26,14,0.35,40,12,15,0.556,27,35,6,0.146,41,0,0,0,0,0,0,0,0,21,3,0.125,24,29,5,0.147,34,19,14,0.424,33,0,0,0,0,0,0,0,0,0,0,0,0,20,11,0.355,31,0,0,0,0,18,6,0.25,24,0,0,0,0,20,7,0.259,27,15,6,0.286,21,19,9,0.321,28,0,0,0,0,23,17,0.425,40,0,0,0,0,29,37,0.561,66,0,0,0,0,16,16,0.5,32,17,5,0.227,22,21,8,0.276,29,27,12,0.308,39,0,0,0,0,15,13,0.464,28,14,9,0.391,23,0,0,0,0,20,8,0.286,28,13,7,0.35,20,0,0,0,0,0,0,0,0,13,10,0.435,23,20,10,0.333,30,0,0,0,0,24,13,0.351,37,13,10,0.435,23,15,6,0.286,21,20,13,0.394,33,22,18,0.45,40,18,14,0.438,32,11,16,0.593,27,36,5,0.122,41,33,22,0.4,55,22,8,0.267,30,19,8,0.296,27,16,6,0.273,22,0,0,0,0,29,5,0.147,34,13,8,0.381,21,32,12,0.273,44,22,7,0.241,29,"NA","NA","Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr14",103681486,"A","G","No","AL139300.1","intron_variant","NA",40,25,0.833,0.556,1066,502,699,328,1765,830,0.333,0.225,0.0087,65,"SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166192;SRR12166268;SRR12166290;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166748;SRR12166832;SRR12166834;SRR12166924;SRR12167015;SRR12167222;SRR12167247;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr14",104147823,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",26557,0,1.842,"A,R","ALU","intronic",0,0,0,0,51,32,0.386,83,42,24,0.364,66,43,25,0.368,68,24,14,0.368,38,31,33,0.516,64,19,9,0.321,28,13,8,0.381,21,18,8,0.308,26,0,0,0,0,47,14,0.23,61,24,14,0.368,38,0,0,0,0,0,0,0,0,0,0,0,0,21,13,0.382,34,0,0,0,0,24,19,0.442,43,29,14,0.326,43,87,67,0.435,154,28,18,0.391,46,0,0,0,0,36,17,0.321,53,13,10,0.435,23,24,16,0.4,40,17,5,0.227,22,13,9,0.409,22,26,20,0.435,46,41,21,0.339,62,52,25,0.325,77,16,16,0.5,32,19,14,0.424,33,19,16,0.457,35,0,0,0,0,19,15,0.441,34,15,10,0.4,25,26,31,0.544,57,11,9,0.45,20,30,18,0.375,48,31,17,0.354,48,40,26,0.394,66,30,17,0.362,47,8,16,0.667,24,17,11,0.393,28,15,13,0.464,28,13,12,0.48,25,13,9,0.409,22,21,14,0.4,35,0,0,0,0,30,17,0.362,47,0,0,0,0,20,14,0.412,34,16,12,0.429,28,13,9,0.409,22,20,11,0.355,31,17,22,0.564,39,21,22,0.512,43,26,14,0.35,40,0,0,0,0,36,19,0.345,55,20,5,0.2,25,0,0,0,0,0,0,0,0,0,0,0,0,17,13,0.433,30,0,0,0,0,8,12,0.6,20,15,11,0.423,26,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19,12,0.387,31,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9,12,0.571,21,0,0,0,0,0,0,0,0,14,10,0.417,24,18,16,0.471,34,0,0,0,0,25,12,0.324,37,29,17,0.37,46,11,14,0.56,25,11,14,0.56,25,0,0,0,0,21,7,0.25,28,18,8,0.308,26,37,18,0.327,55,31,7,0.184,38,"NA","NA","NA","NA","NA","SINE","Alu","AluSx3","rs1567035228","NA","NA","NA","NA","NA","NA","NA"]
["chr15",25166599,"A","G","No","SNHG14","lnc_RNA","NA",46,39,0.958,0.867,1499,1059,710,554,2209,1613,0.311,0.296,0.5638,85,"SRR12165859;SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166355;SRR12166405;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165792;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167279;SRR12167280;SRR12167304;SRR12167351;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr15",25411746,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",33610,0,1.842,"A","ALU","ncRNA_intronic",20,16,0.444,36,29,16,0.356,45,24,11,0.314,35,0,0,0,0,27,14,0.341,41,39,6,0.133,45,18,12,0.4,30,15,8,0.348,23,21,12,0.364,33,24,14,0.368,38,26,14,0.35,40,42,20,0.323,62,11,11,0.5,22,0,0,0,0,23,8,0.258,31,46,12,0.207,58,30,5,0.143,35,19,11,0.367,30,28,15,0.349,43,41,10,0.196,51,44,18,0.29,62,50,29,0.367,79,54,20,0.27,74,36,16,0.308,52,43,18,0.295,61,52,24,0.316,76,59,23,0.28,82,34,13,0.277,47,32,18,0.36,50,35,25,0.417,60,29,12,0.293,41,27,16,0.372,43,19,10,0.345,29,17,6,0.261,23,31,13,0.295,44,23,26,0.531,49,36,35,0.493,71,37,19,0.339,56,60,30,0.333,90,47,13,0.217,60,35,13,0.271,48,50,15,0.231,65,28,7,0.2,35,34,9,0.209,43,38,20,0.345,58,15,18,0.545,33,25,15,0.375,40,26,14,0.35,40,15,7,0.318,22,54,25,0.316,79,0,0,0,0,31,10,0.244,41,28,14,0.333,42,20,10,0.333,30,34,14,0.292,48,36,18,0.333,54,39,14,0.264,53,35,22,0.386,57,22,6,0.214,28,33,6,0.154,39,25,6,0.194,31,24,8,0.25,32,0,0,0,0,33,19,0.365,52,28,11,0.282,39,48,25,0.342,73,18,18,0.5,36,25,10,0.286,35,13,8,0.381,21,18,10,0.357,28,0,0,0,0,15,10,0.4,25,33,7,0.175,40,20,11,0.355,31,28,18,0.391,46,18,10,0.357,28,30,14,0.318,44,0,0,0,0,30,30,0.5,60,34,18,0.346,52,23,14,0.378,37,23,10,0.303,33,36,32,0.471,68,0,0,0,0,0,0,0,0,18,11,0.379,29,23,9,0.281,32,27,18,0.4,45,7,13,0.65,20,27,24,0.471,51,28,15,0.349,43,45,22,0.328,67,15,7,0.318,22,"NA","NA","This gene is located within the Prader-Willi critical region and produces a long, spliced paternally-imprinted RNA that initiates within a common upstream promoter region shared by the SNRPN (small nuclear ribonucleoprotein polypeptide N) and SNURF genes. This transcript serves as a host RNA for the small nucleolar RNA, C/D box 115 and 116 clusters. This RNA extends in antisense into the region of the ubiquitin protein ligase E3A gene (UBE3A), and is thought to regulate imprinted expression of UBE3A in the brain. This transcript undergoes extensive alternative splicing, and may initiate and terminate at multiple locations within this genomic region. The full-length structure of all splice forms is not determined. [provided by RefSeq, Mar 2017]","NA","NA","SINE","Alu","AluSc","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr15",25358251,"A","G","No","UBE3A","intron_variant","NA",34,25,0.708,0.556,688,414,455,308,1143,722,0.282,0.235,0.298,59,"SRR12165859;SRR12166184;SRR12166185;SRR12166187;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167860;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166971;SRR12167002;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407","chr15",25603398,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",3549,0,1.842,"A","ALU","ncRNA_intronic",26,8,0.235,34,0,0,0,0,0,0,0,0,0,0,0,0,12,8,0.4,20,13,9,0.409,22,22,10,0.312,32,0,0,0,0,0,0,0,0,14,10,0.417,24,29,19,0.396,48,14,9,0.391,23,0,0,0,0,0,0,0,0,0,0,0,0,18,18,0.5,36,11,16,0.593,27,18,4,0.182,22,31,16,0.34,47,14,11,0.44,25,26,23,0.469,49,20,11,0.355,31,21,18,0.462,39,17,18,0.514,35,32,18,0.36,50,31,27,0.466,58,21,10,0.323,31,0,0,0,0,22,12,0.353,34,28,8,0.222,36,17,12,0.414,29,17,8,0.32,25,0,0,0,0,0,0,0,0,17,9,0.346,26,21,13,0.382,34,17,19,0.528,36,22,14,0.389,36,33,20,0.377,53,0,0,0,0,0,0,0,0,19,16,0.457,35,0,0,0,0,17,10,0.37,27,23,10,0.303,33,5,17,0.773,22,19,10,0.345,29,21,14,0.4,35,0,0,0,0,21,14,0.4,35,0,0,0,0,18,12,0.4,30,11,14,0.56,25,10,16,0.615,26,19,12,0.387,31,17,14,0.452,31,20,18,0.474,38,22,17,0.436,39,0,0,0,0,15,12,0.444,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,9,0.391,23,15,24,0.615,39,13,9,0.409,22,9,14,0.609,23,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13,12,0.48,25,0,0,0,0,13,9,0.409,22,0,0,0,0,14,14,0.5,28,18,8,0.308,26,12,15,0.556,27,0,0,0,0,18,9,0.333,27,0,0,0,0,0,0,0,0,18,11,0.379,29,22,3,0.12,25,15,18,0.545,33,0,0,0,0,20,6,0.231,26,20,4,0.167,24,27,14,0.341,41,0,0,0,0,"HP:0002465;HP:0002465;HP:0002465;HP:0025190;HP:0007270;HP:0007240;HP:0010864;HP:0010864;HP:0003745;HP:0001290;HP:0001270;HP:0001256;HP:0001250;HP:0001250;HP:0001250;HP:0001250;HP:0001250;HP:0001250;HP:0001252;HP:0001252;HP:0001251;HP:0001251;HP:0001251;HP:0001251;HP:0001251;HP:0001249;HP:0001249;HP:0002591;HP:0001263;HP:0001263;HP:0001263;HP:0001263;HP:0001263;HP:0006101;HP:0410263;HP:0001382;HP:0001347;HP:0008872;HP:0008872;HP:0001344;HP:0001344;HP:0001344;HP:0001337;HP:0000006;HP:0001336;HP:0002650;HP:0002650;HP:0000158;HP:0000154;HP:0000154;HP:0000154;HP:0000154;HP:0000154;HP:0008947;HP:0008947;HP:0008947;HP:0008947;HP:0002019;HP:0002019;HP:0002033;HP:0002033;HP:0002033;HP:0002015;HP:0002015;HP:0002015;HP:0002069;HP:0002079;HP:0002046;HP:0002046;HP:0002046;HP:0002141;HP:0002141;HP:0002141;HP:0002120;HP:0002136;HP:0002136;HP:0002136;HP:0002136;HP:0002136;HP:0002186;HP:0002167;HP:0002167;HP:0002167;HP:0010505;HP:0100703;HP:0100703;HP:0100703;HP:0100738;HP:0100738;HP:0002286;HP:0200085;HP:0007018;HP:0011968;HP:0011968;HP:0011968;HP:0002395;HP:0002395;HP:0002395;HP:0001010;HP:0001010;HP:0001010;HP:0001010;HP:0001010;HP:0002353;HP:0002353;HP:0002353;HP:0002353;HP:0002353;HP:0010808;HP:0010808;HP:0010808;HP:0010808;HP:0002312;HP:0002307;HP:0002307;HP:0002307;HP:0002307;HP:0004209;HP:0005599;HP:0005599;HP:0005599;HP:0005599;HP:0006887;HP:0000639;HP:0000635;HP:0000687;HP:0000687;HP:0000687;HP:0000687;HP:0001999;HP:0004322;HP:0006979;HP:0006979;HP:0004302;HP:0030680;HP:0031936;HP:0031936;HP:0000752;HP:0000752;HP:0000752;HP:0100022;HP:0100022;HP:0100023;HP:0100023;HP:0000736;HP:0000736;HP:0000750;HP:0000749;HP:0000748;HP:0000748;HP:0000748;HP:0000717;HP:0000710;HP:0000729;HP:0000722;HP:0000708;HP:0012758;HP:0004485;HP:0004485;HP:0004485;HP:0004485;HP:0040082;HP:0040082;HP:0040082;HP:0040082;HP:0033063;HP:0040196;HP:0040196;HP:0000286;HP:0000298;HP:0000256;HP:0007730;HP:0007730;HP:0007730;HP:0007730;HP:0000248;HP:0001513;HP:0001513;HP:0001513;HP:0001513;HP:0000327;HP:0000303;HP:0000303;HP:0000303;HP:0000303;HP:0000303;HP:0011185;HP:0000486;HP:0000486;HP:0000486;HP:0000494;HP:0000490;HP:0012448;HP:0005484;HP:0005484;HP:0005484;HP:0005484;HP:0005469;HP:0005469;HP:0005469;HP:0000577;HP:0011203;HP:0000545","Poor speech;Poor speech;Poor speech;Bilateral tonic-clonic seizure with generalized onset;Atypical absence seizure;Progressive gait ataxia;Intellectual disability, severe;Intellectual disability, severe;Sporadic;Generalized hypotonia;Motor delay;Intellectual disability, mild;Seizure;Seizure;Seizure;Seizure;Seizure;Seizure;Hypotonia;Hypotonia;Ataxia;Ataxia;Ataxia;Ataxia;Ataxia;Intellectual disability;Intellectual disability;Polyphagia;Global developmental delay;Global developmental delay;Global developmental delay;Global developmental delay;Global developmental delay;Finger syndactyly;Brain imaging abnormality;Joint hypermobility;Hyperreflexia;Feeding difficulties in infancy;Feeding difficulties in infancy;Absent speech;Absent speech;Absent speech;Tremor;Autosomal dominant inheritance;Myoclonus;Scoliosis;Scoliosis;Macroglossia;Wide mouth;Wide mouth;Wide mouth;Wide mouth;Wide mouth;Infantile muscular hypotonia;Infantile muscular hypotonia;Infantile muscular hypotonia;Infantile muscular hypotonia;Constipation;Constipation;Poor suck;Poor suck;Poor suck;Dysphagia;Dysphagia;Dysphagia;Bilateral tonic-clonic seizure;Hypoplasia of the corpus callosum;Heat intolerance;Heat intolerance;Heat intolerance;Gait imbalance;Gait imbalance;Gait imbalance;Cerebral cortical atrophy;Broad-based gait;Broad-based gait;Broad-based gait;Broad-based gait;Broad-based gait;Apraxia;Abnormality of speech or vocalization;Abnormality of speech or vocalization;Abnormality of speech or vocalization;Limitation of movement at ankles;Tongue thrusting;Tongue thrusting;Tongue thrusting;Abnormal eating behavior;Abnormal eating behavior;Fair hair;Limb tremor;Attention deficit hyperactivity disorder;Feeding difficulties;Feeding difficulties;Feeding difficulties;Lower limb hyperreflexia;Lower limb hyperreflexia;Lower limb hyperreflexia;Hypopigmentation of the skin;Hypopigmentation of the skin;Hypopigmentation of the skin;Hypopigmentation of the skin;Hypopigmentation of the skin;EEG abnormality;EEG abnormality;EEG abnormality;EEG abnormality;EEG abnormality;Protruding tongue;Protruding tongue;Protruding tongue;Protruding tongue;Clumsiness;Drooling;Drooling;Drooling;Drooling;Clinodactyly of the 5th finger;Hypopigmentation of hair;Hypopigmentation of hair;Hypopigmentation of hair;Hypopigmentation of hair;Intellectual disability, progressive;Nystagmus;Blue irides;Widely spaced teeth;Widely spaced teeth;Widely spaced teeth;Widely spaced teeth;Abnormal facial shape;Short stature;Sleep-wake cycle disturbance;Sleep-wake cycle disturbance;Functional motor deficit;Abnormal cardiovascular system morphology;Delayed ability to walk;Delayed ability to walk;Hyperactivity;Hyperactivity;Hyperactivity;Abnormality of movement;Abnormality of movement;Recurrent hand flapping;Recurrent hand flapping;Short attention span;Short attention span;Delayed speech and language development;Paroxysmal bursts of laughter;Inappropriate laughter;Inappropriate laughter;Inappropriate laughter;Autism;Hyperorality;Autistic behavior;Compulsive behaviors;Atypical behavior;Neurodevelopmental delay;Cessation of head growth;Cessation of head growth;Cessation of head growth;Cessation of head growth;Happy demeanor;Happy demeanor;Happy demeanor;Happy demeanor;Shortened sleep phase;Mild microcephaly;Mild microcephaly;Epicanthus;Mask-like facies;Macrocephaly;Iris hypopigmentation;Iris hypopigmentation;Iris hypopigmentation;Iris hypopigmentation;Brachycephaly;Obesity;Obesity;Obesity;Obesity;Hypoplasia of the maxilla;Mandibular prognathia;Mandibular prognathia;Mandibular prognathia;Mandibular prognathia;Mandibular prognathia;EEG with focal epileptiform discharges;Strabismus;Strabismus;Strabismus;Downslanted palpebral fissures;Deeply set eye;Delayed myelination;Secondary microcephaly;Secondary microcephaly;Secondary microcephaly;Secondary microcephaly;Flat occiput;Flat occiput;Flat occiput;Exotropia;EEG with abnormally slow frequencies;Myopia","This gene encodes an E3 ubiquitin-protein ligase, part of the ubiquitin protein degradation system. This imprinted gene is maternally expressed in brain and biallelically expressed in other tissues. Maternally inherited deletion of this gene causes Angelman Syndrome, characterized by severe motor and intellectual retardation, ataxia, hypotonia, epilepsy, absence of speech, and characteristic facies. The protein also interacts with the E6 protein of human papillomavirus types 16 and 18, resulting in ubiquitination and proteolysis of tumor protein p53. Alternative splicing of this gene results in three transcript variants encoding three isoforms with different N-termini. Additional transcript variants have been described, but their full length nature has not been determined. [provided by RefSeq, Jul 2008]","NA","NA","SINE","Alu","AluJb","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr15",90083360,"T","C","No","IDH2","3_prime_UTR_variant","NA",42,42,0.875,0.933,1674,1294,666,608,2340,1902,0.254,0.298,0.1235,84,"SRR12165859;SRR12166096;SRR12166110;SRR12166185;SRR12166187;SRR12166190;SRR12166192;SRR12166221;SRR12166290;SRR12166355;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165792;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167351;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr15",90626592,"NA","NA","NA","NA","promoter_flanking_region","ENSR00000996771","regular_and_hyper","-","ADAR",16548,0,1.557,"A,R","ALU","UTR3",31,9,0.225,40,52,11,0.175,63,0,0,0,0,29,20,0.408,49,0,0,0,0,25,10,0.286,35,31,15,0.326,46,27,21,0.438,48,22,35,0.614,57,37,9,0.196,46,0,0,0,0,41,11,0.212,52,11,11,0.5,22,0,0,0,0,15,6,0.286,21,33,12,0.267,45,0,0,0,0,104,24,0.188,128,51,38,0.427,89,55,32,0.368,87,51,14,0.215,65,41,18,0.305,59,22,9,0.29,31,40,14,0.259,54,60,14,0.189,74,66,13,0.165,79,77,15,0.163,92,20,8,0.286,28,40,16,0.286,56,73,25,0.255,98,31,19,0.38,50,77,23,0.23,100,32,26,0.448,58,17,4,0.19,21,40,13,0.245,53,41,7,0.146,48,41,30,0.423,71,26,14,0.35,40,35,15,0.3,50,0,0,0,0,44,15,0.254,59,58,12,0.171,70,16,8,0.333,24,46,15,0.246,61,35,30,0.462,65,29,10,0.256,39,25,4,0.138,29,27,11,0.289,38,24,7,0.226,31,33,20,0.377,53,22,4,0.154,26,52,9,0.148,61,33,11,0.25,44,31,14,0.311,45,45,36,0.444,81,43,19,0.306,62,32,16,0.333,48,17,15,0.469,32,16,9,0.36,25,24,6,0.2,30,27,9,0.25,36,0,0,0,0,15,15,0.5,30,47,22,0.319,69,15,19,0.559,34,42,31,0.425,73,26,10,0.278,36,31,11,0.262,42,19,4,0.174,23,0,0,0,0,18,10,0.357,28,21,7,0.25,28,11,9,0.45,20,25,10,0.286,35,25,14,0.359,39,31,6,0.162,37,26,18,0.409,44,31,7,0.184,38,18,26,0.591,44,0,0,0,0,32,23,0.418,55,29,17,0.37,46,22,16,0.421,38,36,16,0.308,52,47,18,0.277,65,30,17,0.362,47,37,10,0.213,47,27,15,0.357,42,26,8,0.235,34,53,15,0.221,68,26,13,0.333,39,71,34,0.324,105,58,12,0.171,70,"HP:0001250;HP:0001252;HP:0001263;HP:0001387;HP:0007461;HP:0002664;HP:0000006;HP:0002653;HP:0002653;HP:0002650;HP:0002797;HP:0002797;HP:0001482;HP:0001482;HP:0002763;HP:0002757;HP:0002015;HP:0009592;HP:0100764;HP:0100777;HP:0100733;HP:0100761;HP:0001028;HP:0100615;HP:0200042;HP:0100641;HP:0004936;HP:0004936;HP:0006824;HP:0001928;HP:0001903;HP:0004322;HP:0003002;HP:0100021;HP:0005701;HP:0005701;HP:0000926;HP:0000853;HP:0000826;HP:0100242;HP:0100242;HP:0000944;HP:0040146;HP:0002897;HP:0002893;HP:0001510;HP:0012321;HP:0002983;HP:0001638;HP:0006765;HP:0006765","Seizure;Hypotonia;Global developmental delay;Joint stiffness;Hemangiomatosis;Neoplasm;Autosomal dominant inheritance;Bone pain;Bone pain;Scoliosis;Osteolysis;Osteolysis;Subcutaneous nodule;Subcutaneous nodule;Abnormal cartilage morphology;Recurrent fractures;Dysphagia;Astrocytoma;Lymphangioma;Exostoses;Neoplasm of the parathyroid gland;Visceral angiomatosis;Hemangioma;Ovarian neoplasm;Skin ulcer;Neoplasm of the adrenal cortex;Venous thrombosis;Venous thrombosis;Cranial nerve paralysis;Abnormality of coagulation;Anemia;Short stature;Breast carcinoma;Cerebral palsy;Multiple enchondromatosis;Multiple enchondromatosis;Platyspondyly;Goiter;Precocious puberty;Sarcoma;Sarcoma;Abnormal metaphysis morphology;D-2-hydroxyglutaric acidemia;Parathyroid adenoma;Pituitary adenoma;Growth delay;D-2-hydroxyglutaric aciduria;Micromelia;Cardiomyopathy;Chondrosarcoma;Chondrosarcoma","Isocitrate dehydrogenases catalyze the oxidative decarboxylation of isocitrate to 2-oxoglutarate. These enzymes belong to two distinct subclasses, one of which utilizes NAD(+) as the electron acceptor and the other NADP(+). Five isocitrate dehydrogenases have been reported: three NAD(+)-dependent isocitrate dehydrogenases, which localize to the mitochondrial matrix, and two NADP(+)-dependent isocitrate dehydrogenases, one of which is mitochondrial and the other predominantly cytosolic. Each NADP(+)-dependent isozyme is a homodimer. The protein encoded by this gene is the NADP(+)-dependent isocitrate dehydrogenase found in the mitochondria. It plays a role in intermediary metabolism and energy production. This protein may tightly associate or interact with the pyruvate dehydrogenase complex. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2014]","NA","NA","SINE","Alu","AluSz","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr16",6868681,"A","G","No","RBFOX1","intron_variant","NA",27,9,0.562,0.2,593,186,146,66,739,252,0.113,0.052,0.0121,36,"SRR12165859;SRR12166096;SRR12166185;SRR12166268;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167207;SRR12167276;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167872;SRR12167879;SRR12165815;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12167247;SRR12167279;SRR12167395;SRR12167468","chr16",6918682,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",42947,0,1.449,"A","ALU","intronic",24,9,0.273,33,13,10,0.435,23,0,0,0,0,0,0,0,0,0,0,0,0,21,4,0.16,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30,4,0.118,34,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21,5,0.192,26,18,6,0.25,24,18,2,0.1,20,18,3,0.143,21,0,0,0,0,17,6,0.261,23,0,0,0,0,21,4,0.16,25,24,5,0.172,29,19,3,0.136,22,31,7,0.184,38,31,6,0.162,37,19,6,0.24,25,0,0,0,0,0,0,0,0,17,3,0.15,20,20,4,0.167,24,0,0,0,0,0,0,0,0,0,0,0,0,30,7,0.189,37,33,7,0.175,40,22,6,0.214,28,15,9,0.375,24,38,6,0.136,44,17,3,0.15,20,25,3,0.107,28,19,6,0.24,25,0,0,0,0,0,0,0,0,15,8,0.348,23,0,0,0,0,17,4,0.19,21,0,0,0,0,33,10,0.233,43,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,13,0.419,31,21,9,0.3,30,17,5,0.227,22,0,0,0,0,24,6,0.2,30,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19,5,0.208,24,0,0,0,0,0,0,0,0,15,7,0.318,22,0,0,0,0,0,0,0,0,0,0,0,0,17,7,0.292,24,0,0,0,0,0,0,0,0,22,4,0.154,26,"NA","NA","The Fox-1 family of RNA-binding proteins is evolutionarily conserved, and regulates tissue-specific alternative splicing in metazoa. Fox-1 recognizes a (U)GCAUG stretch in regulated exons or in flanking introns. The protein binds to the C-terminus of ataxin-2 and may contribute to the restricted pathology of spinocerebellar ataxia type 2 (SCA2). Ataxin-2 is the product of the SCA2 gene which causes familial neurodegenerative diseases. Fox-1 and ataxin-2 are both localized in the trans-Golgi network. Several alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2011]","NA","NA","SINE","Alu","AluSx","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr16",21429426,"T","C","No","NPIPB3","processed_transcript","NA",25,13,0.521,0.289,844,365,150,81,994,446,0.08,0.053,0.1374,38,"SRR12165859;SRR12166096;SRR12166185;SRR12166187;SRR12166268;SRR12166290;SRR12166355;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166759;SRR12167000;SRR12167145;SRR12167276;SRR12167307;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167867;SRR12167872;SRR12167875;SRR12165815;SRR12166237;SRR12166264;SRR12166321;SRR12166331;SRR12166346;SRR12166783;SRR12166834;SRR12166978;SRR12167015;SRR12167206;SRR12167395;SRR12167404","chr16",21440747,"NA","NA","NA","NA","NA","NA","regular","-","ADAR",4681,0,1.664,"NA","NA","NA",42,5,0.106,47,21,3,0.125,24,0,0,0,0,0,0,0,0,0,0,0,0,26,4,0.133,30,23,5,0.179,28,0,0,0,0,0,0,0,0,0,0,0,0,53,9,0.145,62,23,6,0.207,29,16,4,0.2,20,0,0,0,0,0,0,0,0,40,8,0.167,48,20,3,0.13,23,37,10,0.213,47,31,5,0.139,36,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26,8,0.235,34,0,0,0,0,0,0,0,0,43,6,0.122,49,0,0,0,0,0,0,0,0,37,5,0.119,42,0,0,0,0,20,6,0.231,26,24,3,0.111,27,0,0,0,0,0,0,0,0,0,0,0,0,42,11,0.208,53,45,6,0.118,51,42,7,0.143,49,46,6,0.115,52,41,5,0.109,46,42,5,0.106,47,0,0,0,0,43,8,0.157,51,0,0,0,0,21,5,0.192,26,40,7,0.149,47,0,0,0,0,0,0,0,0,45,12,0.211,57,0,0,0,0,23,5,0.179,28,0,0,0,0,20,3,0.13,23,0,0,0,0,25,5,0.167,30,39,8,0.17,47,48,8,0.143,56,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,44,9,0.17,53,0,0,0,0,15,7,0.318,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,7,0.259,27,0,0,0,0,0,0,0,0,20,6,0.231,26,0,0,0,0,30,5,0.143,35,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19,3,0.136,22,17,3,0.15,20,0,0,0,0,0,0,0,0,"NA","NA","Located in nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","FLAM_C","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr16",21442029,"T","C","No","NPIPB3","processed_transcript","NA",27,5,0.562,0.111,644,110,194,40,838,150,0.131,0.029,0,32,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166268;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167104;SRR12167141;SRR12167145;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167860;SRR12167862;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166310;SRR12166331;SRR12166783;SRR12167407","chr16",21453350,"NA","NA","NA","NA","promoter_flanking_region","ENSR00001000072","regular","-","ADAR",5729,0,1.449,"NA","NA","NA",26,6,0.188,32,19,4,0.174,23,18,5,0.217,23,21,3,0.125,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,12,0.375,32,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33,10,0.233,43,0,0,0,0,27,4,0.129,31,27,5,0.156,32,15,8,0.348,23,15,6,0.286,21,17,5,0.227,22,30,7,0.189,37,17,5,0.227,22,27,6,0.182,33,41,12,0.226,53,0,0,0,0,18,3,0.143,21,24,5,0.172,29,40,6,0.13,46,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19,14,0.424,33,29,13,0.31,42,27,7,0.206,34,24,6,0.2,30,0,0,0,0,36,8,0.182,44,16,6,0.273,22,0,0,0,0,16,8,0.333,24,0,0,0,0,23,12,0.343,35,19,8,0.296,27,0,0,0,0,29,5,0.147,34,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12,8,0.4,20,0,0,0,0,22,7,0.241,29,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27,16,0.372,43,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,4,0.167,24,0,0,0,0,"NA","NA","Located in nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluJo","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr16",22502743,"A","G","No","NPIPB5","processed_transcript","NA",43,32,0.896,0.711,1948,1082,493,298,2441,1380,0.187,0.16,0.2083,75,"SRR12165859;SRR12166096;SRR12166184;SRR12166185;SRR12166190;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166355;SRR12166405;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167872;SRR12167875;SRR12167879;SRR12165792;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166747;SRR12166783;SRR12166834;SRR12166904;SRR12166912;SRR12166924;SRR12166971;SRR12166978;SRR12167002;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167279;SRR12167280;SRR12167304;SRR12167351;SRR12167395;SRR12167407","chr16",22514064,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",285,0,1.842,"NA","NA","NA",67,14,0.173,81,22,10,0.312,32,0,0,0,0,0,0,0,0,36,9,0.2,45,37,13,0.26,50,0,0,0,0,22,8,0.267,30,17,9,0.346,26,25,8,0.242,33,56,13,0.188,69,43,11,0.204,54,30,9,0.231,39,0,0,0,0,21,3,0.125,24,56,11,0.164,67,30,13,0.302,43,54,13,0.194,67,43,14,0.246,57,44,15,0.254,59,43,17,0.283,60,28,11,0.282,39,92,13,0.124,105,62,9,0.127,71,64,17,0.21,81,84,15,0.152,99,43,18,0.295,61,25,9,0.265,34,40,10,0.2,50,54,18,0.25,72,36,6,0.143,42,28,5,0.152,33,31,6,0.162,37,20,5,0.2,25,31,9,0.225,40,48,15,0.238,63,75,26,0.257,101,82,14,0.146,96,62,10,0.139,72,55,15,0.214,70,39,13,0.25,52,51,9,0.15,60,48,10,0.172,58,52,10,0.161,62,0,0,0,0,43,6,0.122,49,62,8,0.114,70,47,16,0.254,63,23,4,0.148,27,78,21,0.212,99,16,5,0.238,21,49,8,0.14,57,37,13,0.26,50,41,9,0.18,50,0,0,0,0,36,12,0.25,48,77,16,0.172,93,60,13,0.178,73,21,9,0.3,30,21,5,0.192,26,20,5,0.2,25,0,0,0,0,0,0,0,0,27,7,0.206,34,0,0,0,0,89,20,0.183,109,0,0,0,0,26,6,0.188,32,0,0,0,0,17,6,0.261,23,0,0,0,0,21,7,0.25,28,19,6,0.24,25,0,0,0,0,25,4,0.138,29,24,8,0.25,32,23,12,0.343,35,0,0,0,0,38,13,0.255,51,22,7,0.241,29,31,11,0.262,42,12,11,0.478,23,23,9,0.281,32,0,0,0,0,0,0,0,0,20,4,0.167,24,25,5,0.167,30,38,10,0.208,48,26,8,0.235,34,45,12,0.211,57,0,0,0,0,52,12,0.188,64,0,0,0,0,"NA","NA","Located in nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluJb","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr16",24743475,"A","G","No","TNRC6A","intron_variant","NA",27,24,0.562,0.533,613,560,170,192,783,752,0.126,0.135,0.7604,51,"SRR12166096;SRR12166108;SRR12166184;SRR12166185;SRR12166268;SRR12166435;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12167104;SRR12167141;SRR12167207;SRR12167276;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167875;SRR12165815;SRR12166237;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166748;SRR12166783;SRR12167002;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr16",24754796,"NA","NA","NA","NA","NA","NA","regular","+","ADAR",61227,0,1.842,"A","ALU","intronic",0,0,0,0,27,4,0.129,31,35,5,0.125,40,0,0,0,0,13,7,0.35,20,19,5,0.208,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30,6,0.167,36,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27,3,0.1,30,0,0,0,0,0,0,0,0,0,0,0,0,21,5,0.192,26,22,7,0.241,29,12,12,0.5,24,17,6,0.261,23,18,2,0.1,20,23,4,0.148,27,0,0,0,0,0,0,0,0,30,4,0.118,34,34,5,0.128,39,0,0,0,0,22,7,0.241,29,20,5,0.2,25,0,0,0,0,0,0,0,0,27,8,0.229,35,21,9,0.3,30,35,15,0.3,50,21,7,0.25,28,23,8,0.258,31,36,6,0.143,42,18,5,0.217,23,16,5,0.238,21,18,5,0.217,23,17,6,0.261,23,0,0,0,0,0,0,0,0,11,9,0.45,20,0,0,0,0,0,0,0,0,22,4,0.154,26,0,0,0,0,20,5,0.2,25,0,0,0,0,0,0,0,0,17,5,0.227,22,24,4,0.143,28,22,3,0.12,25,21,11,0.344,32,0,0,0,0,52,8,0.133,60,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,3,0.13,23,21,9,0.3,30,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,7,0.333,21,0,0,0,0,20,7,0.259,27,14,6,0.3,20,17,16,0.485,33,19,15,0.441,34,27,16,0.372,43,21,8,0.276,29,30,7,0.189,37,28,11,0.282,39,27,8,0.229,35,26,9,0.257,35,0,0,0,0,24,11,0.314,35,20,3,0.13,23,35,9,0.205,44,19,7,0.269,26,"HP:0000006;HP:0003581;HP:0033054","Autosomal dominant inheritance;Adult onset;Myoclonic tremor","This gene encodes a member of the trinucleotide repeat containing 6 protein family. The protein functions in post-transcriptional gene silencing through the RNA interference (RNAi) and microRNA pathways. The protein associates with messenger RNAs and Argonaute proteins in cytoplasmic bodies known as GW-bodies or P-bodies. Inhibiting expression of this gene delocalizes other GW-body proteins and impairs RNAi and microRNA-induced gene silencing. [provided by RefSeq, Jul 2008]","NA","NA","SINE","Alu","AluJb","rs1182382050","2.79556e-05","NA","NA","NA","NA","NA","NA"]
["chr16",30248915,"T","C","No","NA","NA","NA",40,24,0.833,0.533,1637,549,649,267,2286,816,0.237,0.17,0.0345,64,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167315;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165792;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166747;SRR12166748;SRR12166783;SRR12166834;SRR12167002;SRR12167206;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr16",30260236,"NA","NA","NA","NA","promoter_flanking_region","ENSR00000535532","regular_and_hyper","-","ADAR",2015,1,1.149,"A,R","ALU","intergenic",28,17,0.378,45,40,16,0.286,56,31,7,0.184,38,29,10,0.256,39,30,15,0.333,45,71,28,0.283,99,25,14,0.359,39,0,0,0,0,0,0,0,0,0,0,0,0,50,27,0.351,77,40,20,0.333,60,0,0,0,0,0,0,0,0,14,9,0.391,23,37,11,0.229,48,0,0,0,0,77,25,0.245,102,67,9,0.118,76,72,34,0.321,106,35,9,0.205,44,0,0,0,0,72,45,0.385,117,26,16,0.381,42,54,17,0.239,71,37,26,0.413,63,26,13,0.333,39,24,8,0.25,32,49,14,0.222,63,86,34,0.283,120,25,8,0.242,33,31,8,0.205,39,23,9,0.281,32,19,6,0.24,25,0,0,0,0,19,10,0.345,29,41,17,0.293,58,24,14,0.368,38,45,13,0.224,58,55,12,0.179,67,76,32,0.296,108,51,18,0.261,69,39,10,0.204,49,42,17,0.288,59,44,16,0.267,60,31,11,0.262,42,22,17,0.436,39,30,7,0.189,37,17,3,0.15,20,47,31,0.397,78,0,0,0,0,17,14,0.452,31,16,10,0.385,26,29,13,0.31,42,22,11,0.333,33,29,8,0.216,37,47,26,0.356,73,22,15,0.405,37,21,4,0.16,25,13,8,0.381,21,0,0,0,0,0,0,0,0,0,0,0,0,15,7,0.318,22,19,11,0.367,30,41,14,0.255,55,0,0,0,0,18,6,0.25,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,8,0.333,24,0,0,0,0,0,0,0,0,0,0,0,0,19,6,0.24,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19,14,0.424,33,22,8,0.267,30,17,7,0.292,24,0,0,0,0,15,13,0.464,28,16,5,0.238,21,24,12,0.333,36,28,13,0.317,41,"NA","NA","NA","NA","NA","SINE","Alu","AluY","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr16",30283428,"T","C","No","NA","NA","NA",25,14,0.521,0.311,538,265,196,128,734,393,0.138,0.102,0.2614,39,"SRR12166096;SRR12166108;SRR12166110;SRR12166185;SRR12166187;SRR12166268;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166775;SRR12166823;SRR12167000;SRR12167141;SRR12167145;SRR12167276;SRR12167393;SRR12167396;SRR12167397;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167872;SRR12165815;SRR12166331;SRR12166659;SRR12166747;SRR12166748;SRR12167177;SRR12167206;SRR12167247;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167407;SRR12167468","chr16",30294749,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",922,0,1.557,"A,R","ALU","intergenic",0,0,0,0,47,11,0.19,58,19,4,0.174,23,24,7,0.226,31,0,0,0,0,17,5,0.227,22,24,8,0.25,32,0,0,0,0,0,0,0,0,0,0,0,0,25,10,0.286,35,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,7,0.292,24,0,0,0,0,0,0,0,0,14,7,0.333,21,18,4,0.182,22,19,10,0.345,29,0,0,0,0,17,4,0.19,21,0,0,0,0,19,3,0.136,22,16,10,0.385,26,16,5,0.238,21,0,0,0,0,22,11,0.333,33,38,16,0.296,54,0,0,0,0,19,5,0.208,24,0,0,0,0,0,0,0,0,19,10,0.345,29,18,7,0.28,25,29,12,0.293,41,0,0,0,0,19,5,0.208,24,29,12,0.293,41,20,10,0.333,30,12,9,0.429,21,0,0,0,0,0,0,0,0,0,0,0,0,21,4,0.16,25,0,0,0,0,0,0,0,0,0,0,0,0,15,7,0.318,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,8,0.333,24,0,0,0,0,0,0,0,0,34,5,0.128,39,0,0,0,0,0,0,0,0,0,0,0,0,14,8,0.364,22,15,6,0.286,21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13,8,0.381,21,18,10,0.357,28,0,0,0,0,14,13,0.481,27,0,0,0,0,20,14,0.412,34,15,5,0.25,20,20,7,0.259,27,21,8,0.276,29,0,0,0,0,0,0,0,0,0,0,0,0,33,16,0.327,49,17,13,0.433,30,"NA","NA","NA","NA","NA","SINE","Alu","AluSz","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr17",20317651,"A","G","No","SPECC1","3_prime_UTR_variant","NA",44,40,0.917,0.889,1134,940,577,480,1711,1420,0.317,0.297,0.5109,84,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166387;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167207;SRR12167276;SRR12167307;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167351;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr17",20220964,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",1341,0,1.557,"A,R","ALU","ncRNA_intronic",20,24,0.545,44,49,14,0.222,63,32,6,0.158,38,54,12,0.182,66,13,9,0.409,22,12,10,0.455,22,23,6,0.207,29,16,8,0.333,24,18,4,0.182,22,18,11,0.379,29,24,11,0.314,35,22,8,0.267,30,0,0,0,0,12,9,0.429,21,0,0,0,0,16,10,0.385,26,13,10,0.435,23,40,15,0.273,55,27,7,0.206,34,33,12,0.267,45,30,23,0.434,53,41,14,0.255,55,32,13,0.289,45,23,12,0.343,35,29,15,0.341,44,35,17,0.327,52,32,25,0.439,57,21,10,0.323,31,41,10,0.196,51,0,0,0,0,13,15,0.536,28,14,16,0.533,30,12,8,0.4,20,0,0,0,0,31,15,0.326,46,24,21,0.467,45,31,19,0.38,50,34,20,0.37,54,28,18,0.391,46,14,13,0.481,27,35,7,0.167,42,28,10,0.263,38,25,17,0.405,42,37,20,0.351,57,21,16,0.432,37,22,14,0.389,36,20,16,0.444,36,19,7,0.269,26,0,0,0,0,23,15,0.395,38,0,0,0,0,19,6,0.24,25,27,7,0.206,34,20,17,0.459,37,20,19,0.487,39,26,14,0.35,40,22,12,0.353,34,20,20,0.5,40,0,0,0,0,0,0,0,0,37,11,0.229,48,14,15,0.517,29,13,11,0.458,24,22,19,0.463,41,27,7,0.206,34,29,21,0.42,50,24,11,0.314,35,14,13,0.481,27,15,7,0.318,22,14,7,0.333,21,15,12,0.444,27,19,8,0.296,27,17,6,0.261,23,17,10,0.37,27,23,12,0.343,35,26,6,0.188,32,27,10,0.27,37,16,7,0.304,23,19,23,0.548,42,18,10,0.357,28,25,14,0.359,39,0,0,0,0,20,9,0.31,29,20,5,0.2,25,32,5,0.135,37,35,22,0.386,57,22,9,0.29,31,27,11,0.289,38,18,4,0.182,22,26,14,0.35,40,29,8,0.216,37,68,33,0.327,101,35,10,0.222,45,"NA","NA","The protein encoded by this gene belongs to the cytospin-A family. It is localized in the nucleus, and highly expressed in testis and some cancer cell lines. A chromosomal translocation involving this gene and platelet-derived growth factor receptor, beta gene (PDGFRB) may be a cause of juvenile myelomonocytic leukemia. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Aug 2011]","NA","NA","SINE","Alu","AluJo","rs570323646","NA","NA","NA","NA","NA","NA","NA"]
["chr17",45642710,"A","G","No","LINC02210-CRHR1","intron_variant","NA",31,8,0.646,0.178,661,161,175,56,836,217,0.135,0.05,0.0011,39,"SRR12165859;SRR12166096;SRR12166108;SRR12166185;SRR12166192;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167141;SRR12167145;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166310;SRR12166331;SRR12166346;SRR12167177;SRR12167304;SRR12167407","chr17",43720076,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",21054,0,1.842,"A,R","ALU","intronic",23,4,0.148,27,25,6,0.194,31,20,4,0.167,24,0,0,0,0,0,0,0,0,19,3,0.136,22,0,0,0,0,0,0,0,0,19,4,0.174,23,0,0,0,0,28,7,0.2,35,24,8,0.25,32,0,0,0,0,0,0,0,0,0,0,0,0,21,5,0.192,26,21,6,0.222,27,0,0,0,0,22,6,0.214,28,20,4,0.167,24,16,6,0.273,22,21,7,0.25,28,36,5,0.122,41,22,4,0.154,26,23,3,0.115,26,22,9,0.29,31,0,0,0,0,0,0,0,0,24,7,0.226,31,16,4,0.2,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10,17,0.63,27,18,2,0.1,20,28,9,0.243,37,20,4,0.167,24,18,5,0.217,23,15,7,0.318,22,19,5,0.208,24,19,3,0.136,22,21,5,0.192,26,18,8,0.308,26,34,5,0.128,39,19,3,0.136,22,0,0,0,0,38,6,0.136,44,0,0,0,0,20,7,0.259,27,0,0,0,0,0,0,0,0,22,3,0.12,25,0,0,0,0,25,7,0.219,32,18,8,0.308,26,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12,8,0.4,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,9,0.391,23,0,0,0,0,0,0,0,0,0,0,0,0,12,8,0.4,20,0,0,0,0,"NA","NA","This locus represents naturally occurring readthrough transcription between neighboring genes CRHR1-IT1, CRHR1 intronic transcript 1 (Gene ID: 147081) and CRHR1, corticotropin releasing hormone receptor 1 (Gene ID: 1394) on chromosome 17. The readthrough transcript encodes a protein that shares sequence identity with the product of the CRHR1 gene. [provided by RefSeq, Dec 2016]","NA","NA","SINE","Alu","AluSx","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr19",8262975,"A","G","No","CERS4","2kb_downstream_variant","NA",44,42,0.917,0.933,1093,854,703,614,1796,1468,0.365,0.391,0.3459,86,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165792;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chr19",8327859,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",11403,0,1.149,"A,R","ALU","downstream",30,14,0.318,44,39,21,0.35,60,27,17,0.386,44,19,12,0.387,31,13,10,0.435,23,10,10,0.5,20,19,17,0.472,36,18,9,0.333,27,0,0,0,0,14,13,0.481,27,30,17,0.362,47,19,18,0.486,37,0,0,0,0,0,0,0,0,0,0,0,0,20,14,0.412,34,17,11,0.393,28,18,14,0.438,32,14,18,0.562,32,19,11,0.367,30,22,10,0.312,32,43,22,0.338,65,36,28,0.438,64,26,22,0.458,48,20,13,0.394,33,51,20,0.282,71,36,24,0.4,60,20,19,0.487,39,39,13,0.25,52,41,24,0.369,65,27,13,0.325,40,32,24,0.429,56,21,8,0.276,29,14,8,0.364,22,19,17,0.472,36,23,17,0.425,40,23,20,0.465,43,31,11,0.262,42,15,15,0.5,30,23,18,0.439,41,44,26,0.371,70,12,14,0.538,26,23,19,0.452,42,21,11,0.344,32,29,13,0.31,42,30,20,0.4,50,27,16,0.372,43,19,12,0.387,31,12,10,0.455,22,26,24,0.48,50,19,10,0.345,29,22,17,0.436,39,18,10,0.357,28,24,12,0.333,36,33,21,0.389,54,22,18,0.45,40,23,21,0.477,44,19,9,0.321,28,13,15,0.536,28,37,16,0.302,53,15,12,0.444,27,21,9,0.3,30,18,9,0.333,27,12,16,0.571,28,10,16,0.615,26,27,24,0.471,51,24,16,0.4,40,0,0,0,0,14,12,0.462,26,12,8,0.4,20,19,10,0.345,29,15,5,0.25,20,14,14,0.5,28,16,7,0.304,23,0,0,0,0,13,8,0.381,21,17,12,0.414,29,17,16,0.485,33,10,15,0.6,25,20,15,0.429,35,29,21,0.42,50,15,12,0.444,27,16,11,0.407,27,20,18,0.474,38,21,14,0.4,35,29,23,0.442,52,16,13,0.448,29,22,23,0.511,45,0,0,0,0,27,19,0.413,46,17,12,0.414,29,62,33,0.347,95,18,8,0.308,26,"NA","NA","Enables sphingosine N-acyltransferase activity. Involved in ceramide biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum. [provided by Alliance of Genome Resources, Apr 2022]","NA","NA","SINE","Alu","AluSz","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr19",8264481,"A","G","No","NA","NA","NA",24,16,0.5,0.356,520,369,150,102,670,471,0.113,0.079,0.1864,40,"SRR12165859;SRR12166096;SRR12166221;SRR12166290;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166823;SRR12167000;SRR12167145;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167862;SRR12167867;SRR12167872;SRR12167875;SRR12165815;SRR12166237;SRR12166310;SRR12166321;SRR12166659;SRR12166682;SRR12166783;SRR12166832;SRR12166971;SRR12167002;SRR12167206;SRR12167270;SRR12167279;SRR12167304;SRR12167395;SRR12167407","chr19",8329365,"NA","NA","NA","NA","NA","NA","regular","+","ADAR",9897,0,1.95,"A,R","ALU","intergenic",21,6,0.222,27,21,3,0.125,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,7,0.259,27,0,0,0,0,21,6,0.222,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22,3,0.12,25,19,9,0.321,28,26,8,0.235,34,25,6,0.194,31,24,7,0.226,31,29,8,0.216,37,0,0,0,0,22,3,0.12,25,31,9,0.225,40,0,0,0,0,0,0,0,0,32,9,0.22,41,0,0,0,0,0,0,0,0,19,4,0.174,23,0,0,0,0,0,0,0,0,20,6,0.231,26,8,12,0.6,20,25,6,0.194,31,22,5,0.185,27,19,4,0.174,23,21,5,0.192,26,0,0,0,0,23,9,0.281,32,16,5,0.238,21,0,0,0,0,15,6,0.286,21,19,4,0.174,23,0,0,0,0,0,0,0,0,20,4,0.167,24,0,0,0,0,21,4,0.16,25,0,0,0,0,0,0,0,0,23,6,0.207,29,25,6,0.194,31,0,0,0,0,0,0,0,0,0,0,0,0,23,5,0.179,28,21,6,0.222,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25,5,0.167,30,16,8,0.333,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12,8,0.4,20,0,0,0,0,22,4,0.154,26,0,0,0,0,0,0,0,0,0,0,0,0,34,10,0.227,44,0,0,0,0,0,0,0,0,0,0,0,0,20,3,0.13,23,28,8,0.222,36,0,0,0,0,16,10,0.385,26,0,0,0,0,22,6,0.214,28,0,0,0,0,41,9,0.18,50,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","AluSx1","NA","NA","NA","NA","NA","NA","NA","NA"]
["chr19",57301110,"A","G","No","NA","NA","NA",22,24,0.458,0.533,1014,1060,150,181,1164,1241,0.06,0.079,0.2307,46,"SRR12165859;SRR12166187;SRR12166190;SRR12166268;SRR12166355;SRR12166464;SRR12166494;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167207;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167879;SRR12165792;SRR12166246;SRR12166310;SRR12166321;SRR12166659;SRR12166736;SRR12166747;SRR12166748;SRR12166783;SRR12166869;SRR12166904;SRR12166912;SRR12166924;SRR12166967;SRR12167002;SRR12167015;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167351;SRR12167395;SRR12167404","chr19",57812478,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",130,0,1.449,"A,R","ALU","intergenic",31,6,0.162,37,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,46,6,0.115,52,25,3,0.107,28,0,0,0,0,0,0,0,0,54,7,0.115,61,0,0,0,0,23,4,0.148,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33,9,0.214,42,31,4,0.114,35,0,0,0,0,0,0,0,0,41,5,0.109,46,35,7,0.167,42,44,5,0.102,49,51,8,0.136,59,84,12,0.125,96,0,0,0,0,0,0,0,0,0,0,0,0,66,10,0.132,76,0,0,0,0,34,5,0.128,39,0,0,0,0,0,0,0,0,69,9,0.115,78,70,8,0.103,78,61,7,0.103,68,0,0,0,0,52,9,0.148,61,37,8,0.178,45,45,5,0.1,50,45,7,0.135,52,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37,6,0.14,43,18,3,0.143,21,0,0,0,0,0,0,0,0,0,0,0,0,29,4,0.121,33,0,0,0,0,44,7,0.137,51,38,11,0.224,49,0,0,0,0,0,0,0,0,0,0,0,0,62,9,0.127,71,0,0,0,0,32,8,0.2,40,0,0,0,0,29,11,0.275,40,53,8,0.131,61,48,6,0.111,54,0,0,0,0,0,0,0,0,30,4,0.118,34,36,5,0.122,41,0,0,0,0,41,7,0.146,48,31,5,0.139,36,41,9,0.18,50,0,0,0,0,0,0,0,0,45,8,0.151,53,0,0,0,0,50,8,0.138,58,67,15,0.183,82,59,8,0.119,67,0,0,0,0,62,13,0.173,75,59,8,0.119,67,66,8,0.108,74,0,0,0,0,0,0,0,0,0,0,0,0,18,4,0.182,22,69,8,0.104,77,33,4,0.108,37,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","AluSz","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",74197245,"T","C","No","FTX","lnc_RNA","NA",46,44,0.958,0.978,1641,1715,778,1013,2419,2728,0.299,0.367,0.0046,90,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166221;SRR12166268;SRR12166290;SRR12166355;SRR12166387;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167351;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chrX",73417080,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",52527,0,1.842,"A,R,D","REP","ncRNA_exonic",38,35,0.479,73,41,8,0.163,49,58,17,0.227,75,25,7,0.219,32,21,16,0.432,37,27,10,0.27,37,35,28,0.444,63,23,19,0.452,42,0,0,0,0,27,20,0.426,47,42,14,0.25,56,33,10,0.233,43,10,13,0.565,23,19,3,0.136,22,0,0,0,0,39,25,0.391,64,24,7,0.226,31,24,13,0.351,37,43,15,0.259,58,17,9,0.346,26,47,27,0.365,74,35,21,0.375,56,44,8,0.154,52,34,36,0.514,70,31,17,0.354,48,40,24,0.375,64,99,51,0.34,150,35,6,0.146,41,45,7,0.135,52,33,8,0.195,41,65,43,0.398,108,53,11,0.172,64,20,4,0.167,24,23,7,0.233,30,56,17,0.233,73,57,37,0.394,94,47,34,0.42,81,38,23,0.377,61,47,12,0.203,59,38,11,0.224,49,36,6,0.143,42,22,10,0.312,32,21,16,0.432,37,28,10,0.263,38,31,15,0.326,46,15,11,0.423,26,28,18,0.391,46,27,19,0.413,46,0,0,0,0,52,18,0.257,70,18,6,0.25,24,53,43,0.448,96,25,24,0.49,49,32,25,0.439,57,43,30,0.411,73,50,32,0.39,82,44,25,0.362,69,38,20,0.345,58,15,10,0.4,25,104,38,0.268,142,22,13,0.371,35,27,19,0.413,46,22,19,0.463,41,19,17,0.472,36,36,11,0.234,47,33,23,0.411,56,35,27,0.435,62,17,12,0.414,29,21,14,0.4,35,31,21,0.404,52,24,14,0.368,38,27,15,0.357,42,36,12,0.25,48,43,13,0.232,56,26,14,0.35,40,48,31,0.392,79,34,18,0.346,52,34,19,0.358,53,27,21,0.438,48,68,35,0.34,103,50,28,0.359,78,51,23,0.311,74,56,34,0.378,90,58,28,0.326,86,42,31,0.425,73,53,34,0.391,87,48,26,0.351,74,32,50,0.61,82,15,14,0.483,29,47,32,0.405,79,48,20,0.294,68,80,38,0.322,118,31,16,0.34,47,"NA","NA","This gene is located upstream of XIST, within the X-inactivation center (XIC). It produces a spliced long non-coding RNA that is thought to positively regulate the expression of XIST, which is essential for the initiation and spread of X-inactivation. [provided by RefSeq, May 2015]","NA","NA","LINE","L1","L1MA9","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",74276561,"T","C","No","FTX","lnc_RNA","NA",48,44,1,0.978,540,338,2317,1754,2857,2092,0.806,0.821,0.5322,92,"SRR12165859;SRR12166096;SRR12166108;SRR12166110;SRR12166184;SRR12166185;SRR12166187;SRR12166190;SRR12166192;SRR12166221;SRR12166268;SRR12166290;SRR12166355;SRR12166387;SRR12166405;SRR12166435;SRR12166444;SRR12166459;SRR12166464;SRR12166494;SRR12166510;SRR12166573;SRR12166753;SRR12166759;SRR12166775;SRR12166823;SRR12167000;SRR12167104;SRR12167141;SRR12167145;SRR12167207;SRR12167276;SRR12167307;SRR12167315;SRR12167393;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166180;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166554;SRR12166659;SRR12166682;SRR12166736;SRR12166740;SRR12166747;SRR12166748;SRR12166783;SRR12166832;SRR12166834;SRR12166869;SRR12166904;SRR12166910;SRR12166912;SRR12166924;SRR12166967;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167015;SRR12167177;SRR12167206;SRR12167222;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167351;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chrX",73496396,"NA","NA","NA","NA","NA","NA","regular_and_hyper","-","ADAR",3141,0,1.557,"A,R,D","ALU","ncRNA_intronic",18,59,0.766,77,8,52,0.867,60,6,40,0.87,46,9,18,0.667,27,5,23,0.821,28,10,49,0.831,59,16,35,0.686,51,8,35,0.814,43,8,27,0.771,35,1,25,0.962,26,21,61,0.744,82,14,44,0.759,58,5,25,0.833,30,7,16,0.696,23,13,19,0.594,32,10,45,0.818,55,7,38,0.844,45,7,23,0.767,30,9,63,0.875,72,13,67,0.838,80,10,70,0.875,80,13,51,0.797,64,21,58,0.734,79,6,60,0.909,66,8,59,0.881,67,14,82,0.854,96,12,71,0.855,83,5,63,0.926,68,22,61,0.735,83,17,46,0.73,63,8,61,0.884,69,10,46,0.821,56,15,29,0.659,44,8,28,0.778,36,7,32,0.821,39,19,82,0.812,101,13,77,0.856,90,14,60,0.811,74,23,75,0.765,98,14,68,0.829,82,19,60,0.759,79,11,45,0.804,56,6,49,0.891,55,7,47,0.87,54,10,38,0.792,48,5,38,0.884,43,13,50,0.794,63,15,47,0.758,62,0,0,0,0,12,73,0.859,85,6,26,0.812,32,15,39,0.722,54,5,41,0.891,46,11,41,0.788,52,11,56,0.836,67,17,53,0.757,70,17,84,0.832,101,8,41,0.837,49,5,24,0.828,29,3,58,0.951,61,9,34,0.791,43,2,27,0.931,29,4,20,0.833,24,4,31,0.886,35,7,38,0.844,45,6,61,0.91,67,3,41,0.932,44,11,29,0.725,40,9,22,0.71,31,8,16,0.667,24,1,19,0.95,20,2,25,0.926,27,5,39,0.886,44,6,24,0.8,30,3,23,0.885,26,9,44,0.83,53,6,43,0.878,49,4,20,0.833,24,6,37,0.86,43,9,48,0.842,57,6,44,0.88,50,7,29,0.806,36,6,32,0.842,38,4,35,0.897,39,7,31,0.816,38,8,56,0.875,64,9,39,0.812,48,14,64,0.821,78,6,30,0.833,36,7,77,0.917,84,4,46,0.92,50,30,72,0.706,102,6,22,0.786,28,"NA","NA","This gene is located upstream of XIST, within the X-inactivation center (XIC). It produces a spliced long non-coding RNA that is thought to positively regulate the expression of XIST, which is essential for the initiation and spread of X-inactivation. [provided by RefSeq, May 2015]","NA","NA","SINE","Alu","AluSg","NA","NA","NA","NA","NA","NA","lincRNA","TCONS_l2_00030536:1"]
["chrX",85091826,"A","G","No","APOOL","3_prime_UTR_variant","NA",15,28,0.312,0.622,350,732,94,209,444,941,0.068,0.138,0.0031,43,"SRR12165859;SRR12166110;SRR12166464;SRR12166510;SRR12166573;SRR12166759;SRR12166823;SRR12167000;SRR12167104;SRR12167207;SRR12167396;SRR12167397;SRR12167499;SRR12167685;SRR12167875;SRR12165815;SRR12166180;SRR12166237;SRR12166310;SRR12166321;SRR12166331;SRR12166659;SRR12166682;SRR12166740;SRR12166783;SRR12166832;SRR12166869;SRR12166904;SRR12166971;SRR12166978;SRR12167002;SRR12167012;SRR12167177;SRR12167206;SRR12167247;SRR12167267;SRR12167270;SRR12167279;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407","chrX",84346832,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",190735,0,1.379,"A,R,D","REP","UTR3",17,7,0.292,24,0,0,0,0,0,0,0,0,16,5,0.238,21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,5,0.25,20,0,0,0,0,24,6,0.2,30,21,8,0.276,29,0,0,0,0,28,9,0.243,37,0,0,0,0,21,5,0.192,26,28,7,0.2,35,16,5,0.238,21,0,0,0,0,0,0,0,0,39,8,0.17,47,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,39,6,0.133,45,28,10,0.263,38,20,4,0.167,24,0,0,0,0,16,4,0.2,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22,5,0.185,27,0,0,0,0,0,0,0,0,14,6,0.3,20,18,4,0.182,22,23,5,0.179,28,0,0,0,0,0,0,0,0,26,7,0.212,33,20,5,0.2,25,16,6,0.273,22,0,0,0,0,0,0,0,0,23,8,0.258,31,20,4,0.167,24,0,0,0,0,19,6,0.24,25,0,0,0,0,0,0,0,0,20,13,0.394,33,28,5,0.152,33,0,0,0,0,19,6,0.24,25,18,4,0.182,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27,8,0.229,35,19,5,0.208,24,23,7,0.233,30,20,8,0.286,28,0,0,0,0,48,8,0.143,56,46,22,0.324,68,0,0,0,0,16,8,0.333,24,25,3,0.107,28,32,7,0.179,39,52,16,0.235,68,32,7,0.179,39,31,9,0.225,40,0,0,0,0,47,9,0.161,56,19,4,0.174,23,31,9,0.225,40,0,0,0,0,"NA","NA","This gene encodes a protein which contains an apolipoprotein O superfamily domain. This domain is found on proteins in circulating lipoprotein complexes. [provided by RefSeq, Sep 2011]","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140722929,"A","G","No","LINC00632","lnc_RNA","NA",32,23,0.667,0.511,1195,567,444,210,1639,777,0.182,0.138,0.1506,55,"SRR12165859;SRR12166184;SRR12166185;SRR12166221;SRR12166268;SRR12166290;SRR12166387;SRR12166405;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166823;SRR12167000;SRR12167104;SRR12167145;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165792;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166346;SRR12166659;SRR12166740;SRR12166783;SRR12166834;SRR12166904;SRR12166924;SRR12166967;SRR12166978;SRR12167002;SRR12167015;SRR12167206;SRR12167280;SRR12167304;SRR12167407;SRR12167468","chrX",139805094,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",8368,0,1.95,"A","ALU","ncRNA_intronic",27,15,0.357,42,0,0,0,0,0,0,0,0,0,0,0,0,35,13,0.271,48,35,18,0.34,53,0,0,0,0,0,0,0,0,0,0,0,0,27,11,0.289,38,37,11,0.229,48,47,26,0.356,73,0,0,0,0,17,10,0.37,27,18,10,0.357,28,35,4,0.103,39,0,0,0,0,0,0,0,0,60,10,0.143,70,47,20,0.299,67,37,19,0.339,56,0,0,0,0,43,20,0.317,63,37,22,0.373,59,0,0,0,0,47,16,0.254,63,47,10,0.175,57,30,11,0.268,41,0,0,0,0,47,13,0.217,60,0,0,0,0,0,0,0,0,21,6,0.222,27,0,0,0,0,0,0,0,0,22,11,0.333,33,34,11,0.244,45,22,10,0.312,32,50,9,0.153,59,44,11,0.2,55,53,22,0.293,75,39,13,0.25,52,37,17,0.315,54,40,18,0.31,58,40,13,0.245,53,47,16,0.254,63,37,17,0.315,54,36,11,0.234,47,29,4,0.121,33,45,16,0.262,61,0,0,0,0,26,10,0.278,36,27,13,0.325,40,20,9,0.31,29,36,13,0.265,49,41,13,0.241,54,0,0,0,0,26,3,0.103,29,0,0,0,0,17,6,0.261,23,0,0,0,0,0,0,0,0,18,4,0.182,22,0,0,0,0,0,0,0,0,40,19,0.322,59,0,0,0,0,16,8,0.333,24,0,0,0,0,14,6,0.3,20,0,0,0,0,0,0,0,0,15,6,0.286,21,22,3,0.12,25,0,0,0,0,20,12,0.375,32,34,8,0.19,42,0,0,0,0,28,9,0.243,37,0,0,0,0,15,5,0.25,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,6,0.3,20,18,8,0.308,26,0,0,0,0,0,0,0,0,0,0,0,0,33,14,0.298,47,13,15,0.536,28,"NA","NA","NA","NA","NA","SINE","Alu","AluSp","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140722955,"A","G","No","LINC00632","lnc_RNA","NA",31,19,0.646,0.422,1267,500,365,142,1632,642,0.143,0.096,0.0627,50,"SRR12165859;SRR12166184;SRR12166185;SRR12166221;SRR12166268;SRR12166290;SRR12166387;SRR12166405;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166823;SRR12167000;SRR12167104;SRR12167145;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166346;SRR12166659;SRR12166740;SRR12166747;SRR12166783;SRR12166834;SRR12166904;SRR12166967;SRR12167002;SRR12167015;SRR12167222;SRR12167304;SRR12167407;SRR12167468","chrX",139805120,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",8394,0,1.379,"A,R","ALU","ncRNA_intronic",33,8,0.195,41,0,0,0,0,0,0,0,0,0,0,0,0,29,16,0.356,45,44,10,0.185,54,0,0,0,0,0,0,0,0,0,0,0,0,32,5,0.135,37,40,13,0.245,53,52,28,0.35,80,0,0,0,0,17,11,0.393,28,20,9,0.31,29,0,0,0,0,0,0,0,0,0,0,0,0,60,9,0.13,69,59,24,0.289,83,37,14,0.275,51,0,0,0,0,54,11,0.169,65,46,13,0.22,59,0,0,0,0,49,11,0.183,60,48,9,0.158,57,31,7,0.184,38,0,0,0,0,49,12,0.197,61,0,0,0,0,0,0,0,0,26,7,0.212,33,0,0,0,0,0,0,0,0,25,6,0.194,31,28,6,0.176,34,31,5,0.139,36,57,12,0.174,69,44,9,0.17,53,52,24,0.316,76,44,8,0.154,52,40,13,0.245,53,46,15,0.246,61,43,16,0.271,59,46,20,0.303,66,42,8,0.16,50,43,6,0.122,49,0,0,0,0,60,9,0.13,69,0,0,0,0,28,7,0.2,35,30,8,0.211,38,16,11,0.407,27,37,12,0.245,49,0,0,0,0,0,0,0,0,26,6,0.188,32,0,0,0,0,18,6,0.25,24,0,0,0,0,0,0,0,0,19,3,0.136,22,19,6,0.24,25,0,0,0,0,37,13,0.26,50,0,0,0,0,17,5,0.227,22,0,0,0,0,20,8,0.286,28,0,0,0,0,0,0,0,0,0,0,0,0,19,3,0.136,22,0,0,0,0,0,0,0,0,32,9,0.22,41,0,0,0,0,26,9,0.257,35,0,0,0,0,0,0,0,0,21,6,0.222,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,7,0.292,24,0,0,0,0,0,0,0,0,0,0,0,0,38,9,0.191,47,20,5,0.2,25,"NA","NA","NA","NA","NA","SINE","Alu","AluSp","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140722961,"A","G","No","LINC00632","lnc_RNA","NA",31,21,0.646,0.467,1124,526,388,157,1512,683,0.163,0.109,0.056,52,"SRR12165859;SRR12166184;SRR12166185;SRR12166268;SRR12166290;SRR12166387;SRR12166405;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166823;SRR12167000;SRR12167104;SRR12167145;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165792;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166346;SRR12166659;SRR12166747;SRR12166783;SRR12166834;SRR12166904;SRR12166924;SRR12166978;SRR12167002;SRR12167015;SRR12167222;SRR12167404;SRR12167407;SRR12167468","chrX",139805126,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",8400,0,1.842,"A","ALU","ncRNA_intronic",25,12,0.324,37,0,0,0,0,0,0,0,0,0,0,0,0,31,9,0.225,40,37,13,0.26,50,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34,15,0.306,49,45,32,0.416,77,0,0,0,0,16,12,0.429,28,18,8,0.308,26,27,3,0.1,30,0,0,0,0,0,0,0,0,48,12,0.2,60,58,22,0.275,80,35,10,0.222,45,0,0,0,0,48,14,0.226,62,37,17,0.315,54,0,0,0,0,38,12,0.24,50,41,9,0.18,50,27,11,0.289,38,0,0,0,0,46,11,0.193,57,0,0,0,0,0,0,0,0,28,5,0.152,33,0,0,0,0,0,0,0,0,20,8,0.286,28,26,5,0.161,31,28,7,0.2,35,55,10,0.154,65,43,8,0.157,51,49,25,0.338,74,37,5,0.119,42,33,16,0.327,49,35,21,0.375,56,43,13,0.232,56,46,18,0.281,64,36,17,0.321,53,34,8,0.19,42,24,3,0.111,27,51,9,0.15,60,0,0,0,0,22,8,0.267,30,22,10,0.312,32,16,11,0.407,27,35,13,0.271,48,39,10,0.204,49,0,0,0,0,26,6,0.188,32,0,0,0,0,18,5,0.217,23,0,0,0,0,0,0,0,0,0,0,0,0,19,7,0.269,26,0,0,0,0,34,13,0.277,47,0,0,0,0,14,7,0.333,21,0,0,0,0,19,5,0.208,24,0,0,0,0,0,0,0,0,18,2,0.1,20,0,0,0,0,0,0,0,0,25,4,0.138,29,32,5,0.135,37,0,0,0,0,23,7,0.233,30,0,0,0,0,0,0,0,0,21,6,0.222,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,6,0.273,22,35,12,0.255,47,17,8,0.32,25,"NA","NA","NA","NA","NA","SINE","Alu","AluSp","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140722970,"A","G","No","LINC00632","lnc_RNA","NA",24,12,0.5,0.267,944,360,171,67,1115,427,0.076,0.042,0.033,36,"SRR12165859;SRR12166184;SRR12166185;SRR12166221;SRR12166268;SRR12166290;SRR12166387;SRR12166435;SRR12166464;SRR12166510;SRR12166753;SRR12166759;SRR12166823;SRR12167104;SRR12167145;SRR12167307;SRR12167396;SRR12167511;SRR12167685;SRR12167727;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12165792;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166321;SRR12166747;SRR12166783;SRR12167002;SRR12167015;SRR12167407;SRR12167468","chrX",139805135,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",8409,0,1.842,"A,R","ALU","ncRNA_intronic",26,9,0.257,35,0,0,0,0,0,0,0,0,0,0,0,0,34,4,0.105,38,40,6,0.13,46,0,0,0,0,0,0,0,0,0,0,0,0,28,4,0.125,32,43,6,0.122,49,60,7,0.104,67,0,0,0,0,21,4,0.16,25,0,0,0,0,25,3,0.107,28,0,0,0,0,0,0,0,0,53,7,0.117,60,0,0,0,0,29,8,0.216,37,0,0,0,0,48,10,0.172,58,40,9,0.184,49,0,0,0,0,40,5,0.111,45,0,0,0,0,33,4,0.108,37,0,0,0,0,48,10,0.172,58,0,0,0,0,0,0,0,0,31,4,0.114,35,0,0,0,0,0,0,0,0,22,5,0.185,27,0,0,0,0,0,0,0,0,49,7,0.125,56,40,8,0.167,48,58,14,0.194,72,0,0,0,0,37,11,0.229,48,43,9,0.173,52,45,6,0.118,51,51,11,0.177,62,0,0,0,0,0,0,0,0,20,3,0.13,23,50,9,0.153,59,0,0,0,0,23,7,0.233,30,29,4,0.121,33,23,4,0.148,27,0,0,0,0,40,9,0.184,49,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,3,0.13,23,0,0,0,0,36,9,0.2,45,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31,5,0.139,36,0,0,0,0,25,5,0.167,30,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,41,5,0.109,46,22,4,0.154,26,"NA","NA","NA","NA","NA","SINE","Alu","AluSp","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140723004,"A","G","No","LINC00632","lnc_RNA","NA",25,12,0.521,0.267,984,345,169,70,1153,415,0.078,0.046,0.0834,37,"SRR12165859;SRR12166184;SRR12166185;SRR12166221;SRR12166268;SRR12166387;SRR12166405;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166823;SRR12167104;SRR12167145;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167879;SRR12165792;SRR12165815;SRR12166237;SRR12166246;SRR12166331;SRR12166682;SRR12166783;SRR12166967;SRR12166978;SRR12167002;SRR12167015;SRR12167222","chrX",139805169,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",8443,0,1.557,"A,R","ALU","ncRNA_intronic",36,4,0.1,40,0,0,0,0,0,0,0,0,0,0,0,0,35,5,0.125,40,59,7,0.106,66,0,0,0,0,0,0,0,0,0,0,0,0,25,4,0.138,29,56,8,0.125,64,0,0,0,0,0,0,0,0,21,9,0.3,30,26,3,0.103,29,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,73,16,0.18,89,25,6,0.194,31,0,0,0,0,60,10,0.143,70,51,6,0.105,57,0,0,0,0,43,9,0.173,52,0,0,0,0,24,3,0.111,27,0,0,0,0,43,6,0.122,49,0,0,0,0,0,0,0,0,28,4,0.125,32,0,0,0,0,0,0,0,0,15,5,0.25,20,21,3,0.125,24,33,4,0.108,37,0,0,0,0,0,0,0,0,48,8,0.143,56,43,5,0.104,48,39,10,0.204,49,36,10,0.217,46,55,7,0.113,62,49,10,0.169,59,0,0,0,0,40,7,0.149,47,17,6,0.261,23,55,9,0.141,64,0,0,0,0,28,6,0.176,34,22,14,0.389,36,0,0,0,0,0,0,0,0,0,0,0,0,41,6,0.128,47,0,0,0,0,0,0,0,0,0,0,0,0,18,2,0.1,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36,4,0.1,40,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,2,0.1,20,0,0,0,0,31,4,0.114,35,37,6,0.14,43,0,0,0,0,26,5,0.161,31,0,0,0,0,0,0,0,0,16,6,0.273,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","AluSp","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140727309,"A","G","No","LINC00632","lnc_RNA","NA",24,8,0.5,0.178,389,121,252,71,641,192,0.195,0.065,0.0011,32,"SRR12165859;SRR12166184;SRR12166185;SRR12166268;SRR12166290;SRR12166435;SRR12166444;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12167000;SRR12167104;SRR12167145;SRR12167307;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167879;SRR12165815;SRR12166237;SRR12166321;SRR12166331;SRR12166924;SRR12167002;SRR12167247;SRR12167407","chrX",139809474,"NA","NA","NA","NA","NA","NA","regular","+","ADAR",9620,1,1.449,"A,R","ALU","ncRNA_intronic",13,9,0.409,22,0,0,0,0,0,0,0,0,0,0,0,0,15,5,0.25,20,8,18,0.692,26,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19,9,0.321,28,13,12,0.48,25,0,0,0,0,0,0,0,0,0,0,0,0,14,12,0.462,26,21,4,0.16,25,0,0,0,0,22,6,0.214,28,12,11,0.478,23,14,10,0.417,24,0,0,0,0,14,16,0.533,30,0,0,0,0,0,0,0,0,0,0,0,0,21,14,0.4,35,14,9,0.391,23,0,0,0,0,14,11,0.44,25,0,0,0,0,0,0,0,0,17,4,0.19,21,0,0,0,0,0,0,0,0,0,0,0,0,21,8,0.276,29,20,9,0.31,29,19,11,0.367,30,14,12,0.462,26,19,12,0.387,31,17,14,0.452,31,17,11,0.393,28,14,15,0.517,29,0,0,0,0,0,0,0,0,0,0,0,0,17,10,0.37,27,0,0,0,0,25,16,0.39,41,0,0,0,0,12,9,0.429,21,0,0,0,0,0,0,0,0,0,0,0,0,16,5,0.238,21,16,6,0.273,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,7,0.304,23,0,0,0,0,0,0,0,0,0,0,0,0,11,11,0.5,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11,11,0.5,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,6,0.3,20,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","AluSq","rs1406091943","9.49055e-06","NA","NA","NA","NA","NA","NA"]
["chrX",140731002,"A","G","No","LINC00632","lnc_RNA","NA",25,17,0.521,0.378,601,369,212,116,813,485,0.14,0.091,0.1123,42,"SRR12165859;SRR12166185;SRR12166221;SRR12166268;SRR12166290;SRR12166355;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166823;SRR12167000;SRR12167145;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167727;SRR12167860;SRR12167862;SRR12167869;SRR12167872;SRR12167879;SRR12165815;SRR12166237;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166747;SRR12166783;SRR12166832;SRR12166971;SRR12167015;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chrX",139813167,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",5927,0,1.842,"A","ALU","ncRNA_exonic",28,12,0.3,40,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,11,0.379,29,0,0,0,0,0,0,0,0,0,0,0,0,18,3,0.143,21,15,17,0.531,32,21,12,0.364,33,12,9,0.429,21,0,0,0,0,0,0,0,0,14,8,0.364,22,0,0,0,0,0,0,0,0,31,8,0.205,39,17,4,0.19,21,25,4,0.138,29,0,0,0,0,34,7,0.171,41,27,9,0.25,36,0,0,0,0,30,8,0.211,38,30,4,0.118,34,0,0,0,0,0,0,0,0,43,6,0.122,49,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19,5,0.208,24,30,12,0.286,42,28,6,0.176,34,39,8,0.17,47,0,0,0,0,22,12,0.353,34,19,4,0.174,23,28,9,0.243,37,0,0,0,0,23,7,0.233,30,11,10,0.476,21,0,0,0,0,19,17,0.472,36,0,0,0,0,44,9,0.17,53,0,0,0,0,22,9,0.29,31,0,0,0,0,12,8,0.4,20,25,4,0.138,29,21,9,0.3,30,30,15,0.333,45,24,6,0.2,30,0,0,0,0,19,8,0.296,27,0,0,0,0,0,0,0,0,0,0,0,0,20,5,0.2,25,0,0,0,0,27,7,0.206,34,16,4,0.2,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22,4,0.154,26,0,0,0,0,0,0,0,0,0,0,0,0,20,5,0.2,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,7,0.292,24,19,4,0.174,23,17,4,0.19,21,14,8,0.364,22,"NA","NA","NA","NA","NA","SINE","Alu","AluSx3","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140731041,"A","G","No","LINC00632","lnc_RNA","NA",25,14,0.521,0.311,344,206,360,181,704,387,0.268,0.146,0.0198,39,"SRR12165859;SRR12166185;SRR12166221;SRR12166268;SRR12166290;SRR12166435;SRR12166464;SRR12166510;SRR12166753;SRR12166759;SRR12166823;SRR12167000;SRR12167104;SRR12167145;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166264;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166783;SRR12166971;SRR12167247;SRR12167304;SRR12167395;SRR12167404;SRR12167468","chrX",139813206,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",5888,0,1.842,"A,R","ALU","ncRNA_exonic",12,16,0.571,28,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9,13,0.591,22,0,0,0,0,0,0,0,0,0,0,0,0,11,9,0.45,20,9,14,0.609,23,14,20,0.588,34,0,0,0,0,0,0,0,0,0,0,0,0,10,15,0.6,25,0,0,0,0,0,0,0,0,16,16,0.5,32,0,0,0,0,15,10,0.4,25,0,0,0,0,17,16,0.485,33,19,15,0.441,34,0,0,0,0,17,14,0.452,31,18,13,0.419,31,10,14,0.583,24,0,0,0,0,18,16,0.471,34,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11,9,0.45,20,18,19,0.514,37,12,20,0.625,32,25,16,0.39,41,0,0,0,0,12,16,0.571,28,12,11,0.478,23,14,16,0.533,30,11,13,0.542,24,14,11,0.44,25,0,0,0,0,8,12,0.6,20,12,16,0.571,28,0,0,0,0,30,19,0.388,49,0,0,0,0,16,14,0.467,30,0,0,0,0,11,12,0.522,23,0,0,0,0,20,13,0.394,33,16,23,0.59,39,17,9,0.346,26,0,0,0,0,7,14,0.667,21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,19,0.528,36,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,7,0.333,21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13,8,0.381,21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12,11,0.478,23,0,0,0,0,8,13,0.619,21,15,7,0.318,22,0,0,0,0,10,12,0.545,22,"NA","NA","NA","NA","NA","SINE","Alu","AluSx3","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140731926,"A","G","No","LINC00632","lnc_RNA","NA",29,24,0.604,0.533,689,377,403,277,1092,654,0.224,0.221,0.9609,53,"SRR12165859;SRR12166184;SRR12166185;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166823;SRR12167000;SRR12167104;SRR12167145;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166740;SRR12166747;SRR12166783;SRR12166978;SRR12167002;SRR12167015;SRR12167206;SRR12167222;SRR12167247;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407;SRR12167468","chrX",139814091,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",5003,0,1.557,"A,R","ALU","ncRNA_intronic",21,18,0.462,39,0,0,0,0,0,0,0,0,0,0,0,0,15,9,0.375,24,23,34,0.596,57,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32,19,0.373,51,25,19,0.432,44,0,0,0,0,0,0,0,0,21,7,0.25,28,24,14,0.368,38,0,0,0,0,0,0,0,0,31,17,0.354,48,18,6,0.25,24,24,11,0.314,35,0,0,0,0,24,17,0.415,41,11,15,0.577,26,0,0,0,0,25,16,0.39,41,28,13,0.317,41,34,4,0.105,38,0,0,0,0,38,10,0.208,48,0,0,0,0,0,0,0,0,15,13,0.464,28,0,0,0,0,0,0,0,0,14,11,0.44,25,19,23,0.548,42,28,12,0.3,40,32,8,0.2,40,36,11,0.234,47,32,16,0.333,48,31,7,0.184,38,17,21,0.553,38,14,12,0.462,26,21,18,0.462,39,16,11,0.407,27,0,0,0,0,20,11,0.355,31,0,0,0,0,26,34,0.567,60,0,0,0,0,10,11,0.524,21,20,12,0.375,32,14,11,0.44,25,12,11,0.478,23,17,13,0.433,30,24,20,0.455,44,17,9,0.346,26,0,0,0,0,23,8,0.258,31,0,0,0,0,0,0,0,0,15,10,0.4,25,11,11,0.5,22,0,0,0,0,18,19,0.514,37,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13,9,0.409,22,21,4,0.16,25,0,0,0,0,10,10,0.5,20,0,0,0,0,11,10,0.476,21,15,5,0.25,20,17,14,0.452,31,0,0,0,0,0,0,0,0,0,0,0,0,22,7,0.241,29,11,16,0.593,27,0,0,0,0,11,9,0.45,20,12,9,0.429,21,13,9,0.409,22,14,6,0.3,20,"NA","NA","NA","NA","NA","SINE","Alu","AluSq2","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140731935,"A","G","No","LINC00632","lnc_RNA","NA",28,16,0.583,0.356,740,308,232,143,972,451,0.141,0.11,0.3029,44,"SRR12165859;SRR12166184;SRR12166185;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166759;SRR12166823;SRR12167000;SRR12167145;SRR12167307;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167879;SRR12165815;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166747;SRR12166783;SRR12167247;SRR12167280;SRR12167304;SRR12167404;SRR12167407;SRR12167468","chrX",139814100,"NA","NA","NA","NA","NA","NA","regular","+","ADAR",4994,0,1.842,"A","ALU","ncRNA_intronic",18,12,0.4,30,0,0,0,0,0,0,0,0,0,0,0,0,21,5,0.192,26,45,12,0.211,57,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36,12,0.25,48,30,12,0.286,42,0,0,0,0,0,0,0,0,22,5,0.185,27,25,8,0.242,33,0,0,0,0,0,0,0,0,38,8,0.174,46,26,8,0.235,34,28,9,0.243,37,0,0,0,0,31,7,0.184,38,14,8,0.364,22,0,0,0,0,26,7,0.212,33,27,11,0.289,38,0,0,0,0,0,0,0,0,37,7,0.159,44,0,0,0,0,0,0,0,0,16,7,0.304,23,0,0,0,0,0,0,0,0,16,6,0.273,22,30,6,0.167,36,23,9,0.281,32,31,4,0.114,35,34,9,0.209,43,33,16,0.327,49,29,8,0.216,37,23,9,0.281,32,22,6,0.214,28,22,10,0.312,32,17,8,0.32,25,0,0,0,0,20,3,0.13,23,0,0,0,0,34,18,0.346,52,0,0,0,0,0,0,0,0,17,11,0.393,28,15,6,0.286,21,14,9,0.391,23,13,13,0.5,26,29,14,0.326,43,23,6,0.207,29,0,0,0,0,22,12,0.353,34,0,0,0,0,0,0,0,0,0,0,0,0,19,3,0.136,22,0,0,0,0,21,11,0.344,32,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,12,0.4,30,0,0,0,0,0,0,0,0,0,0,0,0,19,5,0.208,24,19,7,0.269,26,0,0,0,0,0,0,0,0,15,5,0.25,20,15,5,0.25,20,15,6,0.286,21,"NA","NA","NA","NA","NA","SINE","Alu","AluSq2","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140731957,"A","G","No","LINC00632","lnc_RNA","NA",27,17,0.562,0.378,732,325,203,105,935,430,0.121,0.09,0.2435,44,"SRR12165859;SRR12166184;SRR12166185;SRR12166187;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166823;SRR12167000;SRR12167104;SRR12167145;SRR12167396;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166747;SRR12166783;SRR12167206;SRR12167247;SRR12167280;SRR12167304;SRR12167395;SRR12167404;SRR12167407","chrX",139814122,"NA","NA","NA","NA","NA","NA","regular","+","ADAR",4972,0,1.95,"A,R","ALU","ncRNA_intronic",19,5,0.208,24,0,0,0,0,0,0,0,0,0,0,0,0,19,6,0.24,25,33,22,0.4,55,17,3,0.15,20,0,0,0,0,0,0,0,0,0,0,0,0,36,5,0.122,41,37,8,0.178,45,0,0,0,0,0,0,0,0,22,4,0.154,26,25,11,0.306,36,0,0,0,0,0,0,0,0,31,9,0.225,40,41,8,0.163,49,29,9,0.237,38,0,0,0,0,28,11,0.282,39,0,0,0,0,0,0,0,0,21,8,0.276,29,28,5,0.152,33,26,7,0.212,33,0,0,0,0,39,6,0.133,45,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,5,0.25,20,25,6,0.194,31,23,5,0.179,28,31,7,0.184,38,38,5,0.116,43,40,15,0.273,55,30,5,0.143,35,17,8,0.32,25,23,4,0.148,27,21,9,0.3,30,0,0,0,0,0,0,0,0,18,7,0.28,25,0,0,0,0,27,20,0.426,47,0,0,0,0,16,6,0.273,22,17,3,0.15,20,0,0,0,0,15,7,0.318,22,18,4,0.182,22,32,5,0.135,37,19,6,0.24,25,0,0,0,0,28,5,0.152,33,0,0,0,0,0,0,0,0,0,0,0,0,15,5,0.25,20,0,0,0,0,18,7,0.28,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10,11,0.524,21,0,0,0,0,20,6,0.231,26,0,0,0,0,0,0,0,0,0,0,0,0,20,4,0.167,24,17,5,0.227,22,0,0,0,0,19,3,0.136,22,18,2,0.1,20,16,6,0.273,22,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","AluSq2","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140731963,"A","G","No","LINC00632","lnc_RNA","NA",25,15,0.521,0.333,672,277,192,103,864,380,0.117,0.092,0.3743,40,"SRR12165859;SRR12166184;SRR12166185;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166823;SRR12167104;SRR12167145;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167879;SRR12165815;SRR12166237;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166747;SRR12166783;SRR12167206;SRR12167247;SRR12167280;SRR12167304;SRR12167395;SRR12167407","chrX",139814128,"NA","NA","NA","NA","NA","NA","hyper","+","ADAR",4966,0,1.557,"A,R","ALU","ncRNA_intronic",18,4,0.182,22,0,0,0,0,0,0,0,0,0,0,0,0,17,8,0.32,25,42,14,0.25,56,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30,9,0.231,39,37,10,0.213,47,0,0,0,0,0,0,0,0,19,7,0.269,26,25,7,0.219,32,0,0,0,0,0,0,0,0,29,10,0.256,39,42,7,0.143,49,28,8,0.222,36,0,0,0,0,32,6,0.158,38,0,0,0,0,0,0,0,0,24,5,0.172,29,0,0,0,0,27,4,0.129,31,0,0,0,0,32,12,0.273,44,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,13,0.419,31,20,7,0.259,27,29,6,0.171,35,36,6,0.143,42,39,16,0.291,55,33,5,0.132,38,16,9,0.36,25,23,5,0.179,28,22,3,0.12,25,16,6,0.273,22,0,0,0,0,18,5,0.217,23,0,0,0,0,37,9,0.196,46,0,0,0,0,15,5,0.25,20,0,0,0,0,0,0,0,0,16,7,0.304,23,15,7,0.318,22,24,11,0.314,35,18,5,0.217,23,0,0,0,0,26,8,0.235,34,0,0,0,0,0,0,0,0,0,0,0,0,13,8,0.381,21,0,0,0,0,18,7,0.28,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10,10,0.5,20,0,0,0,0,16,9,0.36,25,0,0,0,0,0,0,0,0,0,0,0,0,18,4,0.182,22,17,5,0.227,22,0,0,0,0,17,3,0.15,20,0,0,0,0,17,5,0.227,22,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","AluSq2","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140732043,"A","G","No","LINC00632","lnc_RNA","NA",24,10,0.5,0.222,620,185,148,72,768,257,0.099,0.064,0.155,34,"SRR12166184;SRR12166185;SRR12166268;SRR12166290;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166823;SRR12167000;SRR12167104;SRR12167145;SRR12167397;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166747;SRR12166832;SRR12167002","chrX",139814208,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",4886,0,1.149,"A","ALU","ncRNA_intronic",0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21,7,0.25,28,34,5,0.128,39,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23,9,0.281,32,35,11,0.239,46,0,0,0,0,0,0,0,0,0,0,0,0,26,4,0.133,30,0,0,0,0,0,0,0,0,33,6,0.154,39,42,10,0.192,52,23,3,0.115,26,0,0,0,0,26,7,0.212,33,0,0,0,0,0,0,0,0,16,8,0.333,24,22,6,0.214,28,17,3,0.15,20,0,0,0,0,31,6,0.162,37,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22,5,0.185,27,0,0,0,0,27,10,0.27,37,36,4,0.1,40,36,8,0.182,44,42,5,0.106,47,23,5,0.179,28,17,5,0.227,22,15,9,0.375,24,21,4,0.16,25,16,4,0.2,20,16,4,0.2,20,0,0,0,0,26,6,0.188,32,0,0,0,0,26,5,0.161,31,17,5,0.227,22,0,0,0,0,15,12,0.444,27,16,8,0.333,24,23,8,0.258,31,18,7,0.28,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13,7,0.35,20,0,0,0,0,0,0,0,0,16,6,0.273,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,8,0.348,23,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","AluSq2","NA","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140732057,"A","G","No","LINC00632","lnc_RNA","NA",24,11,0.5,0.244,486,160,282,121,768,281,0.185,0.104,0.0486,35,"SRR12166184;SRR12166185;SRR12166268;SRR12166290;SRR12166405;SRR12166435;SRR12166464;SRR12166494;SRR12166510;SRR12166753;SRR12166823;SRR12167000;SRR12167145;SRR12167397;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166237;SRR12166246;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166832;SRR12167002;SRR12167395","chrX",139814222,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",4872,0,1.842,"A","ALU","ncRNA_intronic",0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,12,0.444,27,22,21,0.488,43,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28,7,0.2,35,31,18,0.367,49,0,0,0,0,0,0,0,0,13,7,0.35,20,17,10,0.37,27,0,0,0,0,0,0,0,0,25,14,0.359,39,21,25,0.543,46,17,9,0.346,26,0,0,0,0,17,16,0.485,33,0,0,0,0,0,0,0,0,12,10,0.455,22,22,10,0.312,32,0,0,0,0,0,0,0,0,28,7,0.2,35,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,14,0.5,28,0,0,0,0,25,13,0.342,38,27,11,0.289,38,26,14,0.35,40,38,10,0.208,48,14,12,0.462,26,15,7,0.318,22,16,9,0.36,25,18,9,0.333,27,9,11,0.55,20,16,6,0.273,22,0,0,0,0,17,13,0.433,30,0,0,0,0,17,10,0.37,27,11,13,0.542,24,0,0,0,0,18,11,0.379,29,11,12,0.522,23,16,16,0.5,32,15,10,0.4,25,0,0,0,0,14,10,0.417,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12,13,0.52,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,8,0.364,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15,5,0.25,20,0,0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","AluSq2","rs1434699358","NA","NA","NA","NA","NA","NA","NA"]
["chrX",140732997,"A","G","No","LINC00632","lnc_RNA","NA",24,16,0.5,0.356,392,273,230,138,622,411,0.183,0.12,0.0998,40,"SRR12165859;SRR12166185;SRR12166187;SRR12166268;SRR12166290;SRR12166435;SRR12166464;SRR12166494;SRR12166753;SRR12166823;SRR12167104;SRR12167145;SRR12167397;SRR12167499;SRR12167511;SRR12167685;SRR12167727;SRR12167860;SRR12167862;SRR12167867;SRR12167869;SRR12167872;SRR12167875;SRR12167879;SRR12165815;SRR12166246;SRR12166264;SRR12166310;SRR12166321;SRR12166331;SRR12166346;SRR12166659;SRR12166682;SRR12166747;SRR12166783;SRR12166971;SRR12166978;SRR12167247;SRR12167395;SRR12167407","chrX",139815162,"NA","NA","NA","NA","NA","NA","regular_and_hyper","+","ADAR",3932,0,1.95,"A,R","ALU","ncRNA_intronic",12,10,0.455,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,15,0.455,33,13,7,0.35,20,0,0,0,0,0,0,0,0,0,0,0,0,22,11,0.333,33,21,11,0.344,32,0,0,0,0,0,0,0,0,0,0,0,0,11,9,0.45,20,0,0,0,0,0,0,0,0,13,16,0.552,29,14,8,0.364,22,0,0,0,0,0,0,0,0,13,9,0.409,22,0,0,0,0,0,0,0,0,18,6,0.25,24,0,0,0,0,15,7,0.318,22,0,0,0,0,14,9,0.391,23,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20,9,0.31,29,17,12,0.414,29,24,12,0.333,36,14,7,0.333,21,14,9,0.391,23,17,14,0.452,31,18,4,0.182,22,18,13,0.419,31,19,6,0.24,25,17,11,0.393,28,15,8,0.348,23,15,7,0.318,22,0,0,0,0,29,14,0.326,43,0,0,0,0,0,0,0,0,12,9,0.429,21,9,11,0.55,20,17,8,0.32,25,18,6,0.25,24,19,13,0.406,32,19,6,0.24,25,0,0,0,0,12,11,0.478,23,17,6,0.261,23,0,0,0,0,0,0,0,0,14,6,0.3,20,0,0,0,0,23,9,0.281,32,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,5,0.238,21,15,7,0.318,22,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18,5,0.217,23,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,14,0.5,28,0,0,0,0,21,8,0.276,29,0,0,0,0,"NA","NA","NA","NA","NA","SINE","Alu","AluSg7","NA","NA","NA","NA","NA","NA","NA","NA"]