Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif	% of Target Sequences with Motif	# of Background Sequences with Motif	% of Background Sequences with Motif	motif	sample
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	0	-25190	0	15880	14.44%	1360.2	1.27%	CTCF(Zf)	A_WT_S1
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	0	-19030	0	16508	15.01%	2292.6	2.13%	BORIS(Zf)	A_WT_S1
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	0	-4322	0	7752	7.05%	2165.9	2.02%	SpiB(ETS)	A_WT_S1
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	0	-4301	0	13265	12.06%	5318.9	4.95%	PU.1(ETS)	A_WT_S1
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	0	-3158	0	15976	14.53%	8043.4	7.49%	ELF5(ETS)	A_WT_S1
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	0	-3087	0	21400	19.46%	12146.5	11.31%	Elf4(ETS)	A_WT_S1
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	0	-3082	0	20509	18.65%	11471.9	10.68%	ETS1(ETS)	A_WT_S1
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	0	-2677	0	17957	16.33%	10010.9	9.32%	Etv2(ETS)	A_WT_S1
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	0	-2569	0	14793	13.45%	7783.6	7.24%	ELF3(ETS)	A_WT_S1
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	0	-2550	0	17974	16.35%	10175.4	9.47%	GABPA(ETS)	A_WT_S1
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	0	-2511	0	27265	24.80%	17643.2	16.42%	ERG(ETS)	A_WT_S1
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	0	-2313	0	20855	18.97%	12733.7	11.85%	Fli1(ETS)	A_WT_S1
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	0	-2300	0	8996	8.18%	4001.4	3.72%	NF1(CTF)	A_WT_S1
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	0	-2254	0	22481	20.45%	14125.3	13.15%	EHF(ETS)	A_WT_S1
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	0	-1888	0	25035	22.77%	16843.3	15.68%	ETV1(ETS)	A_WT_S1
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	0	-1879	0	7052	6.41%	3063	2.85%	Ets1-distal(ETS)	A_WT_S1
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	0	-1802	0	25338	23.04%	17257.6	16.06%	Sox3(HMG)	A_WT_S1
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	0	-1746	0	24374	22.17%	16551	15.40%	Sox10(HMG)	A_WT_S1
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	0	-1740	0	4648	4.23%	1679.7	1.56%	PU.1:IRF8(ETS:IRF)	A_WT_S1
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	0	-1667	0	10777	9.80%	5844.5	5.44%	ELF1(ETS)	A_WT_S1
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	0	-1562	0	6396	5.82%	2885.8	2.69%	IRF8(IRF)	A_WT_S1
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	0	-1518	0	15681	14.26%	9811.3	9.13%	Sox15(HMG)	A_WT_S1
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	0	-1474	0	13962	12.70%	8520	7.93%	Sox2(HMG)	A_WT_S1
ETS(ETS)/Promoter/Homer	AACCGGAAGT	0	-1467	0	7464	6.79%	3690.9	3.44%	ETS(ETS)	A_WT_S1
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	0	-1412	0	11760	10.70%	6902.2	6.42%	EWS:ERG-fusion(ETS)	A_WT_S1
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	0	-1398	0	21826	19.85%	15080.7	14.04%	Sox6(HMG)	A_WT_S1
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	0	-1372	0	13512	12.29%	8321.3	7.74%	Sox4(HMG)	A_WT_S1
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	0	-1342	0	20170	18.34%	13799.9	12.84%	ETV4(ETS)	A_WT_S1
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	0	-1335	0	29413	26.75%	21782.8	20.27%	NF1-halfsite(CTF)	A_WT_S1
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	0	-1280	0	14295	13.00%	9089.9	8.46%	Sox9(HMG)	A_WT_S1
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	0	-1274	0	10984	9.99%	6500.3	6.05%	Sox17(HMG)	A_WT_S1
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	0	-1270	0	25460	23.16%	18474.6	17.19%	Sox21(HMG)	A_WT_S1
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	0	-1256	0	20107	18.29%	13920.8	12.96%	PU.1-IRF(ETS:IRF)	A_WT_S1
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	0	-991.7	0	1009	0.92%	161.5	0.15%	CTCF-SatelliteElement(Zf?)	A_WT_S1
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	0	-853.9	0	33791	30.73%	27092	25.22%	HIC1(Zf)	A_WT_S1
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	0	-844.6	0	4998	4.55%	2599.3	2.42%	IRF3(IRF)	A_WT_S1
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	0	-842.6	0	8815	8.02%	5467	5.09%	Tlx?(NR)	A_WT_S1
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	0	-828.1	0	9803	8.92%	6271.2	5.84%	EWS:FLI1-fusion(ETS)	A_WT_S1
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	0	-759.4	0	9620	8.75%	6247	5.81%	Elk4(ETS)	A_WT_S1
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	0	-753.4	0	6295	5.73%	3661.3	3.41%	NFIL3(bZIP)	A_WT_S1
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	0	-749.3	0	4854	4.41%	2603.1	2.42%	CREB5(bZIP)	A_WT_S1
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	9.999987484956e-319	-733.5	0	11273	10.25%	7641.4	7.11%	Bcl11a(Zf)	A_WT_S1
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1.00E-290	-668.3	0	5009	4.56%	2815.1	2.62%	Sox7(HMG)	A_WT_S1
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1.00E-289	-666.4	0	6260	5.69%	3760.6	3.50%	Atf7(bZIP)	A_WT_S1
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1.00E-287	-662.3	0	16586	15.08%	12306.1	11.45%	Sp5(Zf)	A_WT_S1
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1.00E-277	-638.4	0	10019	9.11%	6807.3	6.34%	Elk1(ETS)	A_WT_S1
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1.00E-266	-613.8	0	8046	7.32%	5252.9	4.89%	Atf1(bZIP)	A_WT_S1
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1.00E-261	-602.4	0	13282	12.08%	9625.6	8.96%	NeuroD1(bHLH)	A_WT_S1
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1.00E-261	-601.4	0	4675	4.25%	2655.6	2.47%	Atf2(bZIP)	A_WT_S1
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1.00E-257	-593.5	0	15542	14.14%	11592.6	10.79%	SPDEF(ETS)	A_WT_S1
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1.00E-257	-591.9	0	8723	7.93%	5842.8	5.44%	THRb(NR)	A_WT_S1
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1.00E-253	-583.6	0	5506	5.01%	3307.1	3.08%	Sp1(Zf)	A_WT_S1
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1.00E-246	-568.6	0	4309	3.92%	2427.9	2.26%	c-Jun-CRE(bZIP)	A_WT_S1
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1.00E-243	-561.5	0	2461	2.24%	1134.1	1.06%	IRF1(IRF)	A_WT_S1
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1.00E-231	-533	0	16458	14.97%	12569	11.70%	Tcf12(bHLH)	A_WT_S1
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1.00E-229	-528.8	0	1845	1.68%	765.6	0.71%	RFX(HTH)	A_WT_S1
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1.00E-224	-516.2	0	7057	6.42%	4642.1	4.32%	Fos(bZIP)	A_WT_S1
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1.00E-223	-514	0	1977	1.80%	859.7	0.80%	Rfx2(HTH)	A_WT_S1
"ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer"	RCAGGATGTGGT	1.00E-215	-495.1	0	1839	1.67%	786.3	0.73%	"ETS:RUNX(ETS,Runt)"	A_WT_S1
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1.00E-214	-493.2	0	6670	6.07%	4375.5	4.07%	Fra1(bZIP)	A_WT_S1
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1.00E-205	-472.2	0	19626	17.85%	15583	14.50%	Ap4(bHLH)	A_WT_S1
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1.00E-200	-462.2	0	7915	7.20%	5453.5	5.08%	Atf3(bZIP)	A_WT_S1
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1.00E-200	-460.7	0	41324	37.58%	35722.6	33.25%	Tgif2(Homeobox)	A_WT_S1
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1.00E-199	-459.9	0	61833	56.24%	55542.1	51.69%	At3g60580(C2H2)	A_WT_S1
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1.00E-198	-457.3	0	3245	2.95%	1788	1.66%	PGR(NR)	A_WT_S1
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1.00E-197	-455.1	0	22320	20.30%	18077.7	16.83%	Sp2(Zf)	A_WT_S1
"GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer"	VAGRACAKWCTGTYC	1.00E-197	-453.7	0	3650	3.32%	2091.6	1.95%	"GRE(NR),IR3"	A_WT_S1
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1.00E-196	-452.6	0	5970	5.43%	3891.5	3.62%	Fra2(bZIP)	A_WT_S1
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1.00E-195	-449.4	0	8917	8.11%	6316.3	5.88%	AP-1(bZIP)	A_WT_S1
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1.00E-194	-448.9	0	7661	6.97%	5273.4	4.91%	HLF(bZIP)	A_WT_S1
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1.00E-191	-440.3	0	11989	10.90%	8956	8.34%	MITF(bHLH)	A_WT_S1
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1.00E-189	-437.5	0	4657	4.24%	2882.5	2.68%	TGA1(bZIP)	A_WT_S1
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1.00E-187	-432.6	0	6685	6.08%	4508.4	4.20%	JunB(bZIP)	A_WT_S1
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1.00E-186	-430.3	0	414	0.38%	62.1	0.06%	REST-NRSF(Zf)	A_WT_S1
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1.00E-184	-423.7	0	67259	61.17%	61097.6	56.87%	AZF1(C2H2)	A_WT_S1
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1.00E-182	-420.2	0	9697	8.82%	7048.2	6.56%	bZIP50(bZIP)	A_WT_S1
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1.00E-179	-412.6	0	6010	5.47%	4001.8	3.72%	TGA6(bZIP)	A_WT_S1
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1.00E-178	-410.1	0	4528	4.12%	2827.2	2.63%	Fosl2(bZIP)	A_WT_S1
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1.00E-176	-405.5	0	1957	1.78%	938.2	0.87%	Mef2d(MADS)	A_WT_S1
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1.00E-176	-405.5	0	1576	1.43%	688.5	0.64%	JunD(bZIP)	A_WT_S1
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1.00E-175	-404.4	0	1939	1.76%	927.5	0.86%	IRF2(IRF)	A_WT_S1
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1.00E-173	-398.4	0	7781	7.08%	5490	5.11%	BATF(bZIP)	A_WT_S1
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1.00E-172	-396.5	0	9656	8.78%	7077.5	6.59%	Zic3(Zf)	A_WT_S1
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1.00E-171	-395.2	0	4356	3.96%	2718	2.53%	Usf2(bHLH)	A_WT_S1
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1.00E-171	-394.3	0	3390	3.08%	1979.9	1.84%	Jun-AP1(bZIP)	A_WT_S1
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1.00E-170	-393.7	0	3808	3.46%	2297.9	2.14%	Mef2c(MADS)	A_WT_S1
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1.00E-168	-388.3	0	9380	8.53%	6864.2	6.39%	Unknown-ESC-element(?)	A_WT_S1
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1.00E-168	-387.6	0	15370	13.98%	12090.9	11.25%	Tcf21(bHLH)	A_WT_S1
SeqBias: GA-repeat	GAGAGAGAGA	1.00E-166	-384.3	0	77026	70.05%	71083.7	66.16%	SeqBias: GA-repeat	A_WT_S1
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1.00E-165	-380.1	0	17189	15.63%	13741.3	12.79%	Atoh1(bHLH)	A_WT_S1
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1.00E-161	-371.1	0	20930	19.04%	17158.5	15.97%	BHLHA15(bHLH)	A_WT_S1
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1.00E-156	-360.5	0	63409	57.67%	57659.9	53.67%	SCL(bHLH)	A_WT_S1
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1.00E-156	-360.1	0	1958	1.78%	983.3	0.92%	X-box(HTH)	A_WT_S1
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1.00E-154	-356.1	0	22244	20.23%	18423.8	17.15%	NeuroG2(bHLH)	A_WT_S1
"GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer"	NRGVACABNVTGTYCY	1.00E-153	-353.7	0	2323	2.11%	1247.6	1.16%	"GRE(NR),IR3"	A_WT_S1
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1.00E-148	-341	0	13873	12.62%	10929.4	10.17%	KLF1(Zf)	A_WT_S1
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1.00E-148	-340.9	0	1419	1.29%	639.1	0.59%	TGA5(bZIP)	A_WT_S1
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1.00E-145	-334	0	1401	1.27%	633.5	0.59%	RORg(NR)	A_WT_S1
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1.00E-144	-331.9	0	11850	10.78%	9175.4	8.54%	TGA9(bZIP)	A_WT_S1
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1.00E-143	-330.8	0	5742	5.22%	3956.7	3.68%	TGA10(bZIP)	A_WT_S1
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1.00E-140	-322.8	0	8032	7.31%	5896.1	5.49%	KLF3(Zf)	A_WT_S1
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1.00E-140	-322.7	0	3237	2.94%	1970.8	1.83%	TGA4(bZIP)	A_WT_S1
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1.00E-133	-307.7	0	2890	2.63%	1728.7	1.61%	Bach2(bZIP)	A_WT_S1
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1.00E-122	-281.8	0	5862	5.33%	4172.4	3.88%	USF1(bHLH)	A_WT_S1
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1.00E-122	-281.7	0	25406	23.11%	21708.9	20.21%	KLF14(Zf)	A_WT_S1
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1.00E-119	-275.6	0	486	0.44%	132.3	0.12%	Ronin(THAP)	A_WT_S1
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1.00E-119	-275.1	0	22116	20.11%	18695.3	17.40%	TCF4(bHLH)	A_WT_S1
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1.00E-118	-273.7	0	23844	21.69%	20301.7	18.90%	Foxo1(Forkhead)	A_WT_S1
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1.00E-116	-268	0	17883	16.26%	14845.5	13.82%	TF3A(C2H2)	A_WT_S1
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1.00E-115	-266.8	0	26226	23.85%	22554.8	20.99%	Olig2(bHLH)	A_WT_S1
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1.00E-115	-265.5	0	3875	3.52%	2575.3	2.40%	Mef2a(MADS)	A_WT_S1
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1.00E-113	-262.3	0	4323	3.93%	2945.1	2.74%	ARE(NR)	A_WT_S1
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1.00E-112	-258.4	0	19425	17.67%	16303.9	15.17%	bZIP52(bZIP)	A_WT_S1
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1.00E-112	-258.2	0	3332	3.03%	2155.1	2.01%	Rfx1(HTH)	A_WT_S1
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1.00E-111	-256	0	9191	8.36%	7104.6	6.61%	RUNX-AML(Runt)	A_WT_S1
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1.00E-110	-253.9	0	952	0.87%	409.3	0.38%	TGA3(bZIP)	A_WT_S1
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1.00E-108	-250.8	0	15582	14.17%	12832.5	11.94%	Rfx6(HTH)	A_WT_S1
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1.00E-105	-242.1	0	9280	8.44%	7231.6	6.73%	RUNX(Runt)	A_WT_S1
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1.00E-103	-237.3	0	4973	4.52%	3541.9	3.30%	E2FA(E2FDP)	A_WT_S1
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1.00E-102	-236.2	0	12936	11.77%	10507.5	9.78%	MyoD(bHLH)	A_WT_S1
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1.00E-102	-235	0	67859	61.72%	62892.2	58.54%	At5g04390(C2H2)	A_WT_S1
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1.00E-100	-232.3	0	1933	1.76%	1118	1.04%	RORa(NR)	A_WT_S1
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1.00E-97	-224.7	0	70039	63.70%	65130.2	60.62%	STZ(C2H2)	A_WT_S1
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1.00E-94	-217.4	0	24217	22.03%	20969.7	19.52%	MYB88(MYB)	A_WT_S1
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1.00E-94	-217	0	7396	6.73%	5671.7	5.28%	Mef2b(MADS)	A_WT_S1
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1.00E-92	-212.4	0	40600	36.93%	36518.4	33.99%	Smad3(MAD)	A_WT_S1
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1.00E-91	-211.4	0	6498	5.91%	4911.9	4.57%	CEBP(bZIP)	A_WT_S1
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1.00E-91	-210.8	0	17575	15.98%	14851.6	13.82%	BMYB(HTH)	A_WT_S1
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1.00E-91	-209.8	0	49182	44.73%	44807.4	41.70%	GAGA-repeat	A_WT_S1
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1.00E-89	-205.2	0	20469	18.62%	17555.8	16.34%	COUP-TFII(NR)	A_WT_S1
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1.00E-88	-204.3	0	1928	1.75%	1154.3	1.07%	RORgt(NR)	A_WT_S1
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1.00E-88	-204.3	0	1928	1.75%	1154.3	1.07%	RORgt(NR)	A_WT_S1
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1.00E-88	-203	0	5157	4.69%	3788.6	3.53%	TGA2(bZIP)	A_WT_S1
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1.00E-87	-200.4	0	3005	2.73%	2007.1	1.87%	CRE(bZIP)	A_WT_S1
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1.00E-86	-199.5	0	29195	26.55%	25760	23.98%	PR(NR)	A_WT_S1
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1.00E-85	-197.6	0	1025	0.93%	506.4	0.47%	ISRE(IRF)	A_WT_S1
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1.00E-85	-196.5	0	10371	9.43%	8377.6	7.80%	RUNX2(Runt)	A_WT_S1
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1.00E-82	-190.3	0	7046	6.41%	5458.7	5.08%	Zic2(Zf)	A_WT_S1
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1.00E-81	-188.3	0	18905	17.19%	16205.1	15.08%	Maz(Zf)	A_WT_S1
SeqBias: C/A-bias	MMMMMMMMMM	1.00E-79	-182.4	0	109895	99.95%	107112.6	99.69%	SeqBias: C	A_WT_S1
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1.00E-78	-181.7	0	18719	17.02%	16072.6	14.96%	AMYB(HTH)	A_WT_S1
SeqBias: polyA-repeat	AAAAAAAAAA	1.00E-78	-181.1	0	107211	97.51%	103700.1	96.52%	SeqBias: polyA-repeat	A_WT_S1
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1.00E-78	-179.9	0	8134	7.40%	6454.9	6.01%	REF6(Zf)	A_WT_S1
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1.00E-77	-179.4	0	1292	1.18%	715.2	0.67%	TFE3(bHLH)	A_WT_S1
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1.00E-76	-176.7	0	3312	3.01%	2310.1	2.15%	Cbf1(bHLH)	A_WT_S1
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1.00E-75	-174.4	0	25495	23.19%	22448.8	20.89%	Twist2(bHLH)	A_WT_S1
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1.00E-74	-172.1	0	4976	4.53%	3725.4	3.47%	Rfx5(HTH)	A_WT_S1
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1.00E-73	-169.5	0	22232	20.22%	19421.9	18.08%	NLP7(RWPRK)	A_WT_S1
"Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer"	NNNVCTGWGYAAACASN	1.00E-72	-167.2	0	11489	10.45%	9519.5	8.86%	"Fox:Ebox(Forkhead,bHLH)"	A_WT_S1
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1.00E-72	-167.1	0	1012	0.92%	529.1	0.49%	NF-E2(bZIP)	A_WT_S1
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1.00E-71	-165.8	0	11632	10.58%	9656.7	8.99%	FEA4(bZIP)	A_WT_S1
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1.00E-71	-165	0	73591	66.93%	69140.8	64.35%	SUT1?	A_WT_S1
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1.00E-70	-162.7	0	1153	1.05%	635.6	0.59%	E-box(bHLH)	A_WT_S1
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1.00E-69	-158.9	0	928	0.84%	479.8	0.45%	Bach1(bZIP)	A_WT_S1
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1.00E-68	-156.6	0	1372	1.25%	806	0.75%	Unknown3	A_WT_S1
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1.00E-66	-153.3	0	20798	18.92%	18190.5	16.93%	MYB(HTH)	A_WT_S1
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1.00E-66	-152.4	0	872	0.79%	447.1	0.42%	Nrf2(bZIP)	A_WT_S1
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1.00E-65	-149.7	0	13399	12.19%	11354.9	10.57%	LHX9(Homeobox)	A_WT_S1
SeqBias: GCW-triplet	GCWGCWGCWGCW	1.00E-64	-147.4	0	109940	99.99%	107256.2	99.83%	SeqBias: GCW-triplet	A_WT_S1
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1.00E-63	-146.8	0	3352	3.05%	2419.2	2.25%	AT2G31460(REMB3)	A_WT_S1
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1.00E-62	-143.9	0	5522	5.02%	4292.3	4.00%	Hoxa10(Homeobox)	A_WT_S1
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1.00E-62	-142.8	0	2615	2.38%	1816.5	1.69%	Atf4(bZIP)	A_WT_S1
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1.00E-59	-136	0	5189	4.72%	4030.4	3.75%	IRF4(IRF)	A_WT_S1
"Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer"	CCATTGTATGCAAAT	1.00E-58	-134.9	0	1395	1.27%	856.6	0.80%	"Oct4:Sox17(POU,Homeobox,HMG)"	A_WT_S1
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1.00E-58	-133.9	0	17411	15.84%	15163.2	14.11%	En1(Homeobox)	A_WT_S1
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1.00E-57	-132.1	0	6481	5.89%	5183.7	4.82%	CLOCK(bHLH)	A_WT_S1
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1.00E-57	-131.8	0	11444	10.41%	9665.8	9.00%	SPCH(bHLH)	A_WT_S1
GFY(?)/Promoter/Homer	ACTACAATTCCC	1.00E-56	-131.2	0	886	0.81%	481.6	0.45%	GFY(?)	A_WT_S1
SeqBias: CG bias	SSSSSSSSSS	1.00E-55	-128.8	0	94205	85.68%	90201.6	83.95%	SeqBias: CG bias	A_WT_S1
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1.00E-55	-128.3	0	36425	33.13%	33214.9	30.91%	Tgif1(Homeobox)	A_WT_S1
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1.00E-55	-127	0	19681	17.90%	17333.9	16.13%	GLIS3(Zf)	A_WT_S1
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1.00E-53	-123.5	0	9356	8.51%	7807.6	7.27%	Lhx2(Homeobox)	A_WT_S1
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1.00E-53	-123	0	10989	9.99%	9300	8.66%	Myf5(bHLH)	A_WT_S1
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1.00E-52	-121	0	13997	12.73%	12080.1	11.24%	MYB81(MYB)	A_WT_S1
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1.00E-51	-119.2	0	3897	3.54%	2966.1	2.76%	DREB19(AP2EREBP)	A_WT_S1
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1.00E-51	-117.8	0	5110	4.65%	4029.8	3.75%	THRa(NR)	A_WT_S1
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1.00E-50	-115.3	0	37107	33.75%	33994.6	31.64%	Trl(Zf)	A_WT_S1
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1.00E-48	-111.8	0	7352	6.69%	6054.9	5.64%	CEBP:AP1(bZIP)	A_WT_S1
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1.00E-47	-109.3	0	3546	3.23%	2696.1	2.51%	E-box	A_WT_S1
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1.00E-46	-108.1	0	6678	6.07%	5466.6	5.09%	AGL63(MADS)	A_WT_S1
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1.00E-46	-106.6	0	6935	6.31%	5704	5.31%	HY5(bZIP)	A_WT_S1
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1.00E-46	-106.1	0	1966	1.79%	1369.7	1.27%	Chop(bZIP)	A_WT_S1
Tal1	CATCTG	1.00E-45	-104.2	0	18282	16.63%	16197.1	15.08%	Tal1	A_WT_S1
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1.00E-44	-103.1	0	14329	13.03%	12511.6	11.64%	MYB77(MYB)	A_WT_S1
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1.00E-44	-103.1	0	1236	1.12%	787.2	0.73%	IRF:BATF(IRF:bZIP)	A_WT_S1
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1.00E-43	-99.15	0	18785	17.08%	16711.1	15.55%	ZNF416(Zf)	A_WT_S1
"OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer"	ATGAATATTCATGAG	1.00E-42	-98.89	0	118	0.11%	23.8	0.02%	"OCT:OCT(POU,Homeobox)"	A_WT_S1
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1.00E-42	-97.97	0	45095	41.01%	41887.9	38.99%	Nanog(Homeobox)	A_WT_S1
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1.00E-42	-97.95	0	18316	16.66%	16280.1	15.15%	MYB73(MYB)	A_WT_S1
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1.00E-42	-97.63	0	3232	2.94%	2464.7	2.29%	SOC1(MADS)	A_WT_S1
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1.00E-41	-94.58	0	1534	1.40%	1042.6	0.97%	BIM3(bHLH)	A_WT_S1
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1.00E-40	-94.29	0	15863	14.43%	14009.6	13.04%	At1g75490(AP2EREBP)	A_WT_S1
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1.00E-40	-94.26	0	2733	2.49%	2046.3	1.90%	bHLH74(bHLH)	A_WT_S1
"ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer"	AGGAARCAGCTG	1.00E-40	-93.28	0	1428	1.30%	959.9	0.89%	"ETS:E-box(ETS,bHLH)"	A_WT_S1
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1.00E-40	-93.15	0	28188	25.64%	25680	23.90%	ERF15(AP2EREBP)	A_WT_S1
"GFY-Staf(?,Zf)/Promoter/Homer"	RACTACAATTCCCAGAAKGC	1.00E-39	-91.04	0	749	0.68%	433.3	0.40%	"GFY-Staf(?,Zf)"	A_WT_S1
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1.00E-39	-90.82	0	7599	6.91%	6388.9	5.95%	Foxa2(Forkhead)	A_WT_S1
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1.00E-39	-90.73	0	2179	1.98%	1586.6	1.48%	PIF7(bHLH)	A_WT_S1
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1.00E-39	-90.31	0	6233	5.67%	5153.2	4.80%	Klf9(Zf)	A_WT_S1
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1.00E-38	-89.78	0	11542	10.50%	10019	9.32%	Zic(Zf)	A_WT_S1
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1.00E-37	-86.2	0	1273	1.16%	849.9	0.79%	BIM1(bHLH)	A_WT_S1
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1.00E-37	-85.66	0	12805	11.65%	11221.9	10.44%	RUNX1(Runt)	A_WT_S1
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1.00E-36	-84.64	0	7209	6.56%	6068.1	5.65%	SGR5(C2H2)	A_WT_S1
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1.00E-36	-83.61	0	12164	11.06%	10640.5	9.90%	PIF5ox(bHLH)	A_WT_S1
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1.00E-36	-83.36	0	10518	9.57%	9115.3	8.48%	STAT4(Stat)	A_WT_S1
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1.00E-36	-83.23	0	6691	6.09%	5605.8	5.22%	Foxo3(Forkhead)	A_WT_S1
SeqBias: G/A bias	RRRRRRRRRR	1.00E-35	-82.39	0	109893	99.95%	107232.3	99.80%	SeqBias: G	A_WT_S1
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1.00E-35	-81.81	0	16041	14.59%	14279.1	13.29%	At5g18450(AP2EREBP)	A_WT_S1
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1.00E-35	-81.11	0	20878	18.99%	18849.3	17.54%	MYB101(MYB)	A_WT_S1
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1.00E-35	-81.05	0	16416	14.93%	14638.5	13.62%	MyoG(bHLH)	A_WT_S1
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1.00E-35	-80.89	0	8749	7.96%	7500.1	6.98%	Stat3+il21(Stat)	A_WT_S1
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1.00E-34	-80.55	0	4986	4.53%	4080.5	3.80%	E2F4(E2F)	A_WT_S1
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1.00E-34	-80.11	0	50873	46.27%	47715.6	44.41%	AR-halfsite(NR)	A_WT_S1
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1.00E-34	-79.56	0	4003	3.64%	3208.5	2.99%	WUS1(Homeobox)	A_WT_S1
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1.00E-34	-78.61	0	3794	3.45%	3027.6	2.82%	Zfp281(Zf)	A_WT_S1
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1.00E-33	-78.18	0	22179	20.17%	20112.8	18.72%	AT5G23930(mTERF)	A_WT_S1
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1.00E-32	-75.88	0	2865	2.61%	2222.7	2.07%	VIP1(bZIP)	A_WT_S1
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1.00E-32	-75.54	0	3112	2.83%	2439.9	2.27%	DREB2(AP2EREBP)	A_WT_S1
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1.00E-32	-75.13	0	1971	1.79%	1455.1	1.35%	bZIP69(bZIP)	A_WT_S1
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1.00E-32	-74.72	0	27018	24.57%	24759.7	23.04%	Initiator	A_WT_S1
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1.00E-32	-73.94	0	17998	16.37%	16194.3	15.07%	KLF5(Zf)	A_WT_S1
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1.00E-31	-73.37	0	1176	1.07%	798.2	0.74%	AGL15(MADS)	A_WT_S1
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1.00E-30	-70.37	0	22458	20.43%	20459.7	19.04%	Smad4(MAD)	A_WT_S1
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1.00E-30	-69.67	0	6039	5.49%	5089.4	4.74%	FOXK2(Forkhead)	A_WT_S1
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1.00E-29	-67.92	0	11660	10.60%	10293.7	9.58%	ZNF467(Zf)	A_WT_S1
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1.00E-27	-63.31	0	4856	4.42%	4051.1	3.77%	Dlx3(Homeobox)	A_WT_S1
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1.00E-27	-62.74	0	8431	7.67%	7331.7	6.82%	TBP3(MYBrelated)	A_WT_S1
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1.00E-27	-62.67	0	6013	5.47%	5108	4.75%	Hand2(bHLH)	A_WT_S1
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1.00E-26	-62.07	0	2794	2.54%	2213.1	2.06%	M1BP(Zf)	A_WT_S1
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1.00E-26	-61.89	0	18670	16.98%	16952	15.78%	Isl1(Homeobox)	A_WT_S1
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1.00E-26	-60.7	0	6798	6.18%	5839.1	5.43%	ZBTB18(Zf)	A_WT_S1
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1.00E-26	-60.33	0	9418	8.57%	8265.3	7.69%	FOXK1(Forkhead)	A_WT_S1
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1.00E-26	-60.3	0	8054	7.33%	7000.4	6.52%	AtHB32(ZFHD)	A_WT_S1
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1.00E-26	-60.02	0	6054	5.51%	5161.8	4.80%	Stat3(Stat)	A_WT_S1
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1.00E-25	-59.77	0	22514	20.48%	20632	19.20%	Nkx6.1(Homeobox)	A_WT_S1
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1.00E-25	-59.63	0	12016	10.93%	10697.9	9.96%	MafA(bZIP)	A_WT_S1
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1.00E-25	-57.97	0	10619	9.66%	9404.2	8.75%	FOXA1(Forkhead)	A_WT_S1
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1.00E-24	-56.91	0	9235	8.40%	8122.6	7.56%	Lhx1(Homeobox)	A_WT_S1
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1.00E-24	-56.8	0	10991	10.00%	9762.6	9.09%	MYB65(MYB)	A_WT_S1
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1.00E-24	-56.51	0	2392	2.18%	1882.5	1.75%	Unknown1(NR	A_WT_S1
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1.00E-24	-56.18	0	21951	19.96%	20138.5	18.74%	Smad2(MAD)	A_WT_S1
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1.00E-24	-55.39	0	2673	2.43%	2134.9	1.99%	Zfp809(Zf)	A_WT_S1
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1.00E-24	-55.36	0	8968	8.16%	7886.5	7.34%	LBD23(LOBAS2)	A_WT_S1
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1.00E-23	-55.01	0	7332	6.67%	6371.5	5.93%	Foxf1(Forkhead)	A_WT_S1
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1.00E-23	-53.94	0	2950	2.68%	2386.1	2.22%	bHLH34(bHLH)	A_WT_S1
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1.00E-23	-53.1	0	13293	12.09%	11959.1	11.13%	EBF1(EBF)	A_WT_S1
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1.00E-23	-53.01	0	1794	1.63%	1375	1.28%	MYB3R1(MYB)	A_WT_S1
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1.00E-22	-52.88	0	3985	3.62%	3320.8	3.09%	FOXP1(Forkhead)	A_WT_S1
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1.00E-22	-52.47	0	3451	3.14%	2841.9	2.65%	bHLHE40(bHLH)	A_WT_S1
SeqBias: A/T bias	WWWWWWWWWW	1.00E-22	-51.78	0	84679	77.01%	81385.7	75.75%	SeqBias: A	A_WT_S1
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1.00E-22	-51.62	0	5219	4.75%	4450.7	4.14%	c-Myc(bHLH)	A_WT_S1
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1.00E-22	-51.04	0	13236	12.04%	11926.4	11.10%	MYB70(MYB)	A_WT_S1
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1.00E-22	-51.01	0	728	0.66%	484.8	0.45%	AGL16(MADS)	A_WT_S1
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1.00E-21	-50.06	0	435	0.40%	257.5	0.24%	AGL25(MADS)	A_WT_S1
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1.00E-21	-48.92	0	17339	15.77%	15834.4	14.74%	JGL(C2H2)	A_WT_S1
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1.00E-20	-48.17	0	13070	11.89%	11799.7	10.98%	DLX2(Homeobox)	A_WT_S1
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1.00E-20	-47.95	0	69620	63.32%	66545.6	61.94%	bZIP18(bZIP)	A_WT_S1
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1.00E-20	-47.93	0	14314	13.02%	12977.5	12.08%	Lhx3(Homeobox)	A_WT_S1
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1.00E-20	-47.04	0	6099	5.55%	5290.2	4.92%	DLX5(Homeobox)	A_WT_S1
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1.00E-20	-47	0	2575	2.34%	2084.8	1.94%	AREB3(bZIP)	A_WT_S1
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1.00E-19	-45.02	0	8046	7.32%	7113.5	6.62%	WT1(Zf)	A_WT_S1
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1.00E-19	-44.79	0	9907	9.01%	8856.2	8.24%	TAGL1(MADS)	A_WT_S1
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1.00E-19	-44.46	0	27160	24.70%	25283.1	23.53%	Nkx3.1(Homeobox)	A_WT_S1
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1.00E-19	-44.38	0	2960	2.69%	2441.6	2.27%	Pknox1(Homeobox)	A_WT_S1
"OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer"	ATTTGCATAACAATG	1.00E-19	-44.29	0	1363	1.24%	1032.1	0.96%	"OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)"	A_WT_S1
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1.00E-19	-44.07	0	169	0.15%	75.2	0.07%	GFX(?)	A_WT_S1
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1.00E-19	-44.07	0	3156	2.87%	2619.6	2.44%	Pbx3(Homeobox)	A_WT_S1
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1.00E-18	-43.66	0	2947	2.68%	2433.3	2.26%	bZIP48(bZIP)	A_WT_S1
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1.00E-18	-43.59	0	2309	2.10%	1863.5	1.73%	MYB98(MYB)	A_WT_S1
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1.00E-18	-43.06	0	16297	14.82%	14914.9	13.88%	Unknown2	A_WT_S1
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1.00E-18	-42.68	0	2310	2.10%	1868.1	1.74%	bZIP28(bZIP)	A_WT_S1
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1.00E-18	-42.58	0	8385	7.63%	7451.6	6.94%	FOXA1(Forkhead)	A_WT_S1
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1.00E-18	-42.5	0	14803	13.46%	13502.8	12.57%	KLF6(Zf)	A_WT_S1
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1.00E-18	-42.43	0	2881	2.62%	2381	2.22%	bZIP68(bZIP)	A_WT_S1
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1.00E-18	-42.18	0	2134	1.94%	1714.8	1.60%	Tcfcp2l1(CP2)	A_WT_S1
"NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer"	WNTGTTTRYTTTGGCA	1.00E-18	-42.1	0	593	0.54%	394	0.37%	"NF1:FOXA1(CTF,Forkhead)"	A_WT_S1
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1.00E-18	-42.03	0	6842	6.22%	6017.2	5.60%	FoxL2(Forkhead)	A_WT_S1
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1.00E-18	-41.96	0	2650	2.41%	2175.8	2.03%	bZIP53(bZIP)	A_WT_S1
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1.00E-18	-41.85	0	475	0.43%	301.4	0.28%	MYB3R5(MYB)	A_WT_S1
"FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer"	AGGTCANTGACCTB	1.00E-18	-41.81	0	4359	3.96%	3726.9	3.47%	"FXR(NR),IR1"	A_WT_S1
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1.00E-17	-41.42	0	1887	1.72%	1499.3	1.40%	ABF2(bZIP)	A_WT_S1
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1.00E-17	-41.27	0	3423	3.11%	2876.9	2.68%	DEL2(E2FDP)	A_WT_S1
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1.00E-17	-41.23	0	4658	4.24%	4004.2	3.73%	E-box	A_WT_S1
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1.00E-17	-41.07	0	4321	3.93%	3696.7	3.44%	At1g36060(AP2EREBP)	A_WT_S1
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1.00E-17	-41.04	0	5074	4.61%	4388.2	4.08%	Klf4(Zf)	A_WT_S1
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1.00E-17	-40.8	0	33662	30.62%	31606.3	29.42%	PHA-4(Forkhead)	A_WT_S1
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1.00E-17	-40.27	0	1085	0.99%	807.5	0.75%	MYB3R4(MYB)	A_WT_S1
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1.00E-17	-39.66	0	799	0.73%	568.1	0.53%	NFE2L2(bZIP)	A_WT_S1
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1.00E-16	-38.94	0	2753	2.50%	2283.7	2.13%	Foxa3(Forkhead)	A_WT_S1
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1.00E-16	-38.78	0	6758	6.15%	5966.6	5.55%	Gfi1b(Zf)	A_WT_S1
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1.00E-16	-38.57	0	18003	16.37%	16597.7	15.45%	AT1G28160(AP2EREBP)	A_WT_S1
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1.00E-16	-38.56	0	1391	1.27%	1076.4	1.00%	Unknown3	A_WT_S1
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1.00E-16	-38.34	0	1329	1.21%	1023.5	0.95%	ZNF675(Zf)	A_WT_S1
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1.00E-16	-37.53	0	10932	9.94%	9895	9.21%	ZNF189(Zf)	A_WT_S1
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1.00E-16	-37.41	0	3332	3.03%	2816.5	2.62%	AT1G76870(Trihelix)	A_WT_S1
"Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer"	TATGCWAATBAV	1.00E-16	-37.41	0	2735	2.49%	2275.7	2.12%	"Brn1(POU,Homeobox)"	A_WT_S1
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1.00E-16	-37.13	0	2709	2.46%	2253.4	2.10%	GBF5(bZIP)	A_WT_S1
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1.00E-15	-36.49	0	10707	9.74%	9694.5	9.02%	EBF2(EBF)	A_WT_S1
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1.00E-15	-36.3	0	5180	4.71%	4521.4	4.21%	STAT6(Stat)	A_WT_S1
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1.00E-15	-35.92	0	21038	19.13%	19537.2	18.18%	AT5G02460(C2C2dof)	A_WT_S1
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1.00E-15	-35.81	0	1952	1.78%	1581.5	1.47%	At5g65130(AP2EREBP)	A_WT_S1
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1.00E-15	-35.74	0	5526	5.03%	4847	4.51%	ZNF7(Zf)	A_WT_S1
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1.00E-15	-35.4	0	10512	9.56%	9522.2	8.86%	Hoxd10(Homeobox)	A_WT_S1
"ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer"	VAGGTCACNSTGACC	1.00E-15	-35.15	0	3206	2.92%	2715	2.53%	"ERE(NR),IR3"	A_WT_S1
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1.00E-15	-34.67	0	7678	6.98%	6863.3	6.39%	Pdx1(Homeobox)	A_WT_S1
"Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer"	GATTTGCATA	1.00E-15	-34.67	0	2590	2.36%	2159.3	2.01%	"Oct11(POU,Homeobox)"	A_WT_S1
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1.00E-14	-33.37	0	10640	9.68%	9666.1	9.00%	AT1G69570(C2C2dof)	A_WT_S1
"Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer"	ATGAATATTC	1.00E-14	-33.24	0	648	0.59%	459.8	0.43%	"Brn2(POU,Homeobox)"	A_WT_S1
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1.00E-13	-32.09	0	7523	6.84%	6743.6	6.28%	DEAR2(AP2EREBP)	A_WT_S1
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1.00E-13	-31.99	0	12904	11.74%	11830	11.01%	AT1G71450(AP2EREBP)	A_WT_S1
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1.00E-13	-31.98	0	9270	8.43%	8388.7	7.81%	BIM2(bHLH)	A_WT_S1
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1.00E-13	-31.8	0	26094	23.73%	24461.7	22.77%	Hoxa9(Homeobox)	A_WT_S1
"Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer"	AGGTGHCAGACA	1.00E-13	-31.38	0	2405	2.19%	2010.8	1.87%	"Tbox:Smad(T-box,MAD)"	A_WT_S1
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1.00E-13	-31.35	0	3589	3.26%	3090.3	2.88%	ABI5(bZIP)	A_WT_S1
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1.00E-13	-31.27	0	6600	6.00%	5886.2	5.48%	CEJ1(AP2EREBP)	A_WT_S1
"Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer"	WATGCAAATGAG	1.00E-13	-30.94	0	3649	3.32%	3148.7	2.93%	"Oct6(POU,Homeobox)"	A_WT_S1
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1.00E-13	-30.75	0	8355	7.60%	7539.4	7.02%	LIN-39(Homeobox)	A_WT_S1
"NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer"	SARTGGAAAAWRTGAGTCAB	1.00E-13	-30.64	0	1615	1.47%	1305.8	1.22%	"NFAT:AP1(RHD,bZIP)"	A_WT_S1
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1.00E-13	-30.63	0	22757	20.70%	21271.9	19.80%	Ascl1(bHLH)	A_WT_S1
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1.00E-13	-30.4	0	14275	12.98%	13155.8	12.24%	PIF4(bHLH)	A_WT_S1
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1.00E-13	-30.27	0	834	0.76%	624.4	0.58%	AGL6(MADS)	A_WT_S1
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1.00E-13	-30.1	0	1674	1.52%	1360.7	1.27%	O2(bZIP)	A_WT_S1
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1.00E-12	-29.82	0	1817	1.65%	1489.7	1.39%	GBF6(bZIP)	A_WT_S1
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1.00E-12	-29.7	0	10770	9.80%	9833.4	9.15%	SOL1(CPP)	A_WT_S1
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1.00E-12	-29.25	0	4607	4.19%	4046.9	3.77%	AT3G10030(Trihelix)	A_WT_S1
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1.00E-12	-29.04	0	2387	2.17%	2007.5	1.87%	EBF(EBF)	A_WT_S1
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1.00E-12	-28.68	0	1728	1.57%	1415.8	1.32%	Twist(bHLH)	A_WT_S1
"OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer"	ATGAATWATTCATGA	1.00E-12	-28.63	0	158	0.14%	82.6	0.08%	"OCT:OCT(POU,Homeobox,IR1)"	A_WT_S1
"OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer"	ATGCATWATGCATRW	1.00E-12	-28.38	0	4751	4.32%	4187.1	3.90%	"OCT:OCT-short(POU,Homeobox)"	A_WT_S1
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1.00E-12	-28.26	0	2055	1.87%	1711.4	1.59%	Srebp1a(bHLH)	A_WT_S1
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1.00E-12	-28.25	0	8243	7.50%	7461.6	6.94%	n-Myc(bHLH)	A_WT_S1
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1.00E-12	-28.01	0	4430	4.03%	3892.5	3.62%	bZIP3(bZIP)	A_WT_S1
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1.00E-12	-27.97	0	16661	15.15%	15469.3	14.40%	Rbpj1(?)	A_WT_S1
"LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer"	RGGTTACTANAGGTCA	1.00E-12	-27.74	0	542	0.49%	385.9	0.36%	"LXRE(NR),DR4"	A_WT_S1
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1.00E-11	-27.48	0	9888	8.99%	9025.4	8.40%	ATHB33(ZFHD)	A_WT_S1
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1.00E-11	-27.35	0	10242	9.31%	9362.9	8.71%	RIN(MADS)	A_WT_S1
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1.00E-11	-26.87	0	2276	2.07%	1919.4	1.79%	bZIP16(bZIP)	A_WT_S1
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1.00E-11	-26.85	0	11216	10.20%	10293.6	9.58%	TCX2(CPP)	A_WT_S1
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1.00E-11	-26.83	0	2117	1.93%	1775.2	1.65%	MYB119(MYB)	A_WT_S1
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1.00E-11	-26.64	0	13953	12.69%	12902.8	12.01%	AtGRF6(GRF)	A_WT_S1
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1.00E-11	-26.4	0	2407	2.19%	2041.5	1.90%	MafF(bZIP)	A_WT_S1
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1.00E-11	-26.33	0	3465	3.15%	3012.8	2.80%	AtIDD11(C2H2)	A_WT_S1
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1.00E-11	-25.54	0	1757	1.60%	1457.2	1.36%	Dorsal(RHD)	A_WT_S1
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1.00E-10	-24.96	0	1871	1.70%	1563.4	1.46%	RRTF1(AP2EREBP)	A_WT_S1
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1.00E-10	-24.85	0	997	0.91%	785	0.73%	ZNF317(Zf)	A_WT_S1
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1.00E-10	-24.65	0	408	0.37%	282.1	0.26%	ZNF768(Zf)	A_WT_S1
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1.00E-10	-24.6	0	300	0.27%	195.6	0.18%	AGL13(MADS)	A_WT_S1
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1.00E-10	-24.13	0	10148	9.23%	9315.6	8.67%	Replumless(BLH)	A_WT_S1
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1.00E-10	-24	0	2527	2.30%	2166.2	2.02%	At5g66730(C2H2)	A_WT_S1
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1.00E-10	-23.31	0	1152	1.05%	927.4	0.86%	PBX1(Homeobox)	A_WT_S1
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1.00E-10	-23.16	0	759	0.69%	583.3	0.54%	AARE(HLH)	A_WT_S1
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1.00E-09	-22.93	0	9164	8.33%	8397.7	7.82%	FOXM1(Forkhead)	A_WT_S1
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1.00E-09	-22.91	0	35725	32.49%	33951.8	31.60%	HuR(?)	A_WT_S1
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1.00E-09	-22.83	0	16008	14.56%	14928.4	13.89%	MYB33(MYB)	A_WT_S1
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1.00E-09	-22.48	0	36264	32.98%	34484.5	32.10%	ARF2(ARF)	A_WT_S1
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1.00E-09	-22.38	0	3549	3.23%	3121.6	2.91%	STAT5(Stat)	A_WT_S1
"bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer"	NAGTTTCABTHTGACTNW	1.00E-09	-22.31	0	4414	4.01%	3927.2	3.66%	"bZIP:IRF(bZIP,IRF)"	A_WT_S1
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1.00E-09	-21.94	0	2181	1.98%	1863.9	1.73%	MYB118(MYB)	A_WT_S1
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1.00E-09	-21.43	0	2023	1.84%	1722.9	1.60%	DMRT1(DM)	A_WT_S1
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1.00E-09	-21.08	0	18457	16.79%	17310.2	16.11%	At2g33710(AP2EREBP)	A_WT_S1
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1.00E-09	-21.07	0	5256	4.78%	4728	4.40%	Foxh1(Forkhead)	A_WT_S1
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1.00E-09	-20.97	0	7886	7.17%	7211.7	6.71%	Max(bHLH)	A_WT_S1
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1.00E-09	-20.81	0	4796	4.36%	4300	4.00%	CHR(?)	A_WT_S1
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1.00E-08	-19.94	0	6135	5.58%	5568.7	5.18%	PRDM1(Zf)	A_WT_S1
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1.00E-08	-19.73	0	17325	15.76%	16248.5	15.12%	ANAC046(NAC)	A_WT_S1
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1.00E-08	-19.64	0	21023	19.12%	19808.8	18.44%	SPL9(SBP)	A_WT_S1
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1.00E-08	-19.58	0	3626	3.30%	3217.4	2.99%	At5g08750(C3H)	A_WT_S1
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1.00E-08	-19.09	0	8664	7.88%	7975.5	7.42%	NFAT(RHD)	A_WT_S1
"PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer"	GTCACGCTCSCTGM	1.00E-08	-18.99	0	1243	1.13%	1029.1	0.96%	"PAX5(Paired,Homeobox),condensed"	A_WT_S1
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1.00E-08	-18.88	0	6847	6.23%	6254.5	5.82%	RKD2(RWPRK)	A_WT_S1
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1.00E-08	-18.86	0	3561	3.24%	3163.5	2.94%	CAMTA1(CAMTA)	A_WT_S1
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1.00E-08	-18.85	0	6082	5.53%	5531.4	5.15%	E2F6(E2F)	A_WT_S1
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1.00E-08	-18.81	0	15599	14.19%	14608.3	13.60%	ERF105(AP2EREBP)	A_WT_S1
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1.00E-08	-18.75	0	4956	4.51%	4471.2	4.16%	NFkB-p65(RHD)	A_WT_S1
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1.00E-08	-18.72	0	1091	0.99%	894.3	0.83%	CEBP:CEBP(bZIP)	A_WT_S1
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1.00E-08	-18.7	0	10573	9.62%	9799.7	9.12%	KAN2(G2like)	A_WT_S1
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1.00E-08	-18.59	0	5621	5.11%	5099.9	4.75%	PRDM9(Zf)	A_WT_S1
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1.00E-08	-18.58	0	2947	2.68%	2594.1	2.41%	Tbx20(T-box)	A_WT_S1
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1.00E-07	-18.37	0	4559	4.15%	4102.3	3.82%	AT2G15740(C2H2)	A_WT_S1
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1.00E-07	-18.18	0	533	0.48%	405.3	0.38%	NFkB-p65-Rel(RHD)	A_WT_S1
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1.00E-07	-18.07	0	16310	14.83%	15305.1	14.24%	CDF3(C2C2dof)	A_WT_S1
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1.00E-07	-17.81	0	20008	18.20%	18869.9	17.56%	ANAC038(NAC)	A_WT_S1
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1.00E-07	-17.68	0	2162	1.97%	1875.4	1.75%	LBD2(LOBAS2)	A_WT_S1
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1.00E-07	-17.64	0	21785	19.81%	20586.3	19.16%	Meis1(Homeobox)	A_WT_S1
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1.00E-07	-17.43	0	174	0.16%	109	0.10%	bZIP44(bZIP)	A_WT_S1
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1.00E-07	-17.39	0	2254	2.05%	1962.8	1.83%	DDF1(AP2EREBP)	A_WT_S1
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1.00E-07	-16.98	0	19154	17.42%	18064	16.81%	dof24(C2C2dof)	A_WT_S1
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1.00E-07	-16.68	0	3176	2.89%	2824.6	2.63%	AT1G12630(AP2EREBP)	A_WT_S1
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1.00E-07	-16.45	0	5402	4.91%	4918.9	4.58%	STAT6(Stat)	A_WT_S1
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1.00E-07	-16.39	0	21689	19.73%	20522.9	19.10%	ATAF1(NAC)	A_WT_S1
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1.00E-07	-16.31	0	2063	1.88%	1794.6	1.67%	Pho4(bHLH)	A_WT_S1
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1.00E-06	-16.03	0	6538	5.95%	5999.3	5.58%	NAP(NAC)	A_WT_S1
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1.00E-06	-16.02	0	1322	1.20%	1118	1.04%	GT3a(Trihelix)	A_WT_S1
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1.00E-06	-16.02	0	4353	3.96%	3934.7	3.66%	ZNF143|STAF(Zf)	A_WT_S1
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1.00E-06	-15.99	0	6469	5.88%	5934.6	5.52%	GATA4(C2C2gata)	A_WT_S1
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1.00E-06	-15.98	0	3463	3.15%	3099.2	2.88%	IDD7(C2H2)	A_WT_S1
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1.00E-06	-15.89	0	16090	14.63%	15138.1	14.09%	SPL1(SBP)	A_WT_S1
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1.00E-06	-15.78	0	8573	7.80%	7938.6	7.39%	DPL-1(E2F)	A_WT_S1
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1.00E-06	-15.77	0	11945	10.86%	11161.9	10.39%	TATA-Box(TBP)	A_WT_S1
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1.00E-06	-15.66	0	1162	1.06%	974.5	0.91%	At2g44940(AP2EREBP)	A_WT_S1
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1.00E-06	-15.62	0	14909	13.56%	14008.3	13.04%	Knotted(Homeobox)	A_WT_S1
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1.00E-06	-15.48	0	2028	1.84%	1768.5	1.65%	NRF1(NRF)	A_WT_S1
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1.00E-06	-15.44	0	2327	2.12%	2045.6	1.90%	At4g31060(AP2EREBP)	A_WT_S1
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1.00E-06	-15.28	0	2599	2.36%	2299.2	2.14%	SPL5(SBP)	A_WT_S1
"Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer"	ATATGCAAAT	1.00E-06	-15.24	0	2119	1.93%	1854.4	1.73%	"Oct2(POU,Homeobox)"	A_WT_S1
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1.00E-06	-14.93	0	1386	1.26%	1182.8	1.10%	Srebp2(bHLH)	A_WT_S1
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1.00E-06	-14.48	0	15802	14.37%	14891.7	13.86%	Hoxd12(Homeobox)	A_WT_S1
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1.00E-06	-14.44	0	1580	1.44%	1363.5	1.27%	bHLH10(bHLH)	A_WT_S1
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1.00E-06	-14.39	0	4651	4.23%	4234	3.94%	At4g16750(AP2EREBP)	A_WT_S1
"Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer"	ATTTGCATAW	1.00E-06	-14.22	0	3613	3.29%	3258.3	3.03%	"Oct4(POU,Homeobox)"	A_WT_S1
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1.00E-06	-14.15	0	1731	1.57%	1504.8	1.40%	Hoxb4(Homeobox)	A_WT_S1
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1.00E-06	-14.1	0	5910	5.38%	5430.4	5.05%	SPL11(SBP)	A_WT_S1
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1.00E-05	-13.57	0	11121	10.11%	10413.6	9.69%	DLX1(Homeobox)	A_WT_S1
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1.00E-05	-13.42	0	9140	8.31%	8519.6	7.93%	NAM(NAC)	A_WT_S1
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1.00E-05	-13.34	0	204	0.19%	141.5	0.13%	EBNA1(EBV-virus)	A_WT_S1
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1.00E-05	-13.27	0	10157	9.24%	9495.3	8.84%	bHLH80(bHLH)	A_WT_S1
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1.00E-05	-12.89	0	6182	5.62%	5706.3	5.31%	ATHB23(ZFHD)	A_WT_S1
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1.00E-05	-12.64	0	5510	5.01%	5071.6	4.72%	ATHB34(ZFHD)	A_WT_S1
"GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer"	NNNNNBAGATAWYATCTVHN	1.00E-05	-12.56	0	1056	0.96%	896.9	0.83%	"GATA(Zf),IR3"	A_WT_S1
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1.00E-05	-12.3	0	2870	2.61%	2581.6	2.40%	At4g36780(BZR)	A_WT_S1
"GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer"	CRGCTGBNGNSNNSAGATAA	1.00E-05	-12.19	0	1163	1.06%	996.5	0.93%	"GATA:SCL(Zf,bHLH)"	A_WT_S1
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1.00E-05	-12.07	0	1405	1.28%	1219.6	1.14%	AT3G58630(Trihelix)	A_WT_S1
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1.00E-05	-11.94	0	8746	7.95%	8169.1	7.60%	Egr1(Zf)	A_WT_S1
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1.00E-05	-11.62	0	2791	2.54%	2514.2	2.34%	CArG(MADS)	A_WT_S1
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1.00E-05	-11.53	0	10430	9.49%	9791.3	9.11%	AT2G20110(CPP)	A_WT_S1
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1.00E-04	-11.3	0	5715	5.20%	5286.2	4.92%	HAT2(Homeobox)	A_WT_S1
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1.00E-04	-11.27	0	6104	5.55%	5657.4	5.27%	ATHB13(Homeobox)	A_WT_S1
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1.00E-04	-10.96	0	5084	4.62%	4691.3	4.37%	ATHB24(ZFHD)	A_WT_S1
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1.00E-04	-10.7	1.00E-04	1410	1.28%	1234.5	1.15%	TINY(AP2EREBP)	A_WT_S1
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1.00E-04	-10.54	1.00E-04	12649	11.50%	11946.1	11.12%	ERF13(AP2EREBP)	A_WT_S1
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1.00E-04	-10.44	1.00E-04	34562	31.43%	33170.3	30.87%	Zac1(Zf)	A_WT_S1
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1.00E-04	-10.41	1.00E-04	3900	3.55%	3575.3	3.33%	GBF3(bZIP)	A_WT_S1
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1.00E-04	-10.38	1.00E-04	413	0.38%	329.6	0.31%	ZBTB33(Zf)	A_WT_S1
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1.00E-04	-10.21	1.00E-04	1822	1.66%	1621.8	1.51%	MYNN(Zf)	A_WT_S1
"RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer"	GGGRAARRGRMCAGMTG	1.00E-04	-10.19	1.00E-04	4134	3.76%	3800.4	3.54%	"RBPJ:Ebox(?,bHLH)"	A_WT_S1
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1.00E-04	-9.932	1.00E-04	598	0.54%	496.8	0.46%	CDM1(C3H)	A_WT_S1
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1.00E-04	-9.829	1.00E-04	1537	1.40%	1359.4	1.27%	AT3G60490(AP2EREBP)	A_WT_S1
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1.00E-04	-9.626	2.00E-04	21356	19.42%	20381.9	18.97%	Hoxa13(Homeobox)	A_WT_S1
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1.00E-04	-9.552	2.00E-04	932	0.85%	802.7	0.75%	ZSCAN22(Zf)	A_WT_S1
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1.00E-04	-9.491	2.00E-04	11663	10.61%	11022.8	10.26%	GRF9(GRF)	A_WT_S1
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1.00E-04	-9.488	2.00E-04	21939	19.95%	20950.9	19.50%	AT2G28810(C2C2dof)	A_WT_S1
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1.00E-04	-9.312	2.00E-04	206	0.19%	153.4	0.14%	p53(p53)	A_WT_S1
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	0.001	-9.155	2.00E-04	978	0.89%	847.6	0.79%	SPL14(SBP)	A_WT_S1
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	0.001	-9.144	2.00E-04	3073	2.79%	2809.5	2.61%	ZNF519(Zf)	A_WT_S1
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	0.001	-8.98	3.00E-04	1899	1.73%	1705.9	1.59%	AT3G16280(AP2EREBP)	A_WT_S1
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	0.001	-8.938	3.00E-04	644	0.59%	543.5	0.51%	Unknown1	A_WT_S1
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	0.001	-8.887	3.00E-04	1772	1.61%	1587.8	1.48%	DMRT6(DM)	A_WT_S1
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	0.001	-8.816	3.00E-04	189	0.17%	140.4	0.13%	T1ISRE(IRF)	A_WT_S1
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	0.001	-8.763	4.00E-04	3494	3.18%	3213.7	2.99%	Hoxc9(Homeobox)	A_WT_S1
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	0.001	-8.739	4.00E-04	5472	4.98%	5097.3	4.74%	AT3G25990(Trihelix)	A_WT_S1
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	0.001	-8.689	4.00E-04	9549	8.68%	9007.7	8.38%	NFY(CCAAT)	A_WT_S1
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	0.001	-8.617	4.00E-04	516	0.47%	429.7	0.40%	GATA19(C2C2gata)	A_WT_S1
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	0.001	-8.472	5.00E-04	6743	6.13%	6318.9	5.88%	MYB56(MYB)	A_WT_S1
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	0.001	-8.41	5.00E-04	1490	1.36%	1328.5	1.24%	bHLH28(bHLH)	A_WT_S1
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	0.001	-8.366	5.00E-04	10362	9.42%	9797.2	9.12%	ZNF341(Zf)	A_WT_S1
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	0.001	-8.361	5.00E-04	2348	2.14%	2134.1	1.99%	EKLF(Zf)	A_WT_S1
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	0.001	-8.196	6.00E-04	1903	1.73%	1717.2	1.60%	Phox2a(Homeobox)	A_WT_S1
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	0.001	-8.141	6.00E-04	16550	15.05%	15776	14.68%	ZFX(Zf)	A_WT_S1
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	0.001	-8.074	7.00E-04	3820	3.47%	3533.8	3.29%	At2g41835(C2H2)	A_WT_S1
"Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer"	GTRGGTCASTGGGTCA	0.001	-8.055	7.00E-04	1573	1.43%	1409	1.31%	"Reverb(NR),DR2"	A_WT_S1
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	0.001	-8.055	7.00E-04	15121	13.75%	14397.5	13.40%	COUP-TFII(NR)	A_WT_S1
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	0.001	-8.04	7.00E-04	5014	4.56%	4672.1	4.35%	HOXA9(Homeobox)	A_WT_S1
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	0.001	-7.944	8.00E-04	4114	3.74%	3815.7	3.55%	ZNF322(Zf)	A_WT_S1
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	0.001	-7.939	8.00E-04	2052	1.87%	1860.3	1.73%	ATHB20(Homeobox)	A_WT_S1
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	0.001	-7.84	9.00E-04	1497	1.36%	1340.5	1.25%	REB1	A_WT_S1
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	0.001	-7.718	0.001	11428	10.39%	10841.7	10.09%	RAP26(AP2EREBP)	A_WT_S1
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	0.001	-7.505	0.0012	3549	3.23%	3285	3.06%	Rap210(AP2EREBP)	A_WT_S1
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	0.001	-7.501	0.0012	13889	12.63%	13223.4	12.31%	EAR2(NR)	A_WT_S1
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	0.001	-7.485	0.0012	4566	4.15%	4254.7	3.96%	MYB105(MYB)	A_WT_S1
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	0.001	-7.332	0.0014	3154	2.87%	2911.9	2.71%	ANL2(HB)	A_WT_S1
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	0.001	-7.301	0.0014	2043	1.86%	1859.5	1.73%	MGP(C2H2)	A_WT_S1
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	0.001	-7.228	0.0015	638	0.58%	548.9	0.51%	Unknown4	A_WT_S1
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	0.001	-7.215	0.0016	8691	7.90%	8217.1	7.65%	ABF1(bZIP)	A_WT_S1
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	0.001	-7.117	0.0017	1976	1.80%	1798.9	1.67%	Pit1+1bp(Homeobox)	A_WT_S1
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	0.001	-7.011	0.0019	6316	5.74%	5939.1	5.53%	PBX2(Homeobox)	A_WT_S1
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	0.01	-6.848	0.0022	811	0.74%	710.6	0.66%	DEAR5(AP2EREBP)	A_WT_S1
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	0.01	-6.706	0.0026	3634	3.31%	3378.6	3.14%	SVP(MADS)	A_WT_S1
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	0.01	-6.517	0.0031	84	0.08%	58.1	0.05%	ZNF16(Zf)	A_WT_S1
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	0.01	-6.407	0.0035	8166	7.43%	7732.8	7.20%	LBD13(LOBAS2)	A_WT_S1
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	0.01	-6.335	0.0037	9377	8.53%	8901	8.28%	ABR1(AP2EREBP)	A_WT_S1
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	0.01	-6.26	0.004	13254	12.05%	12648.3	11.77%	DAG2(C2C2dof)	A_WT_S1
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	0.01	-6.109	0.0046	2636	2.40%	2437.5	2.27%	At1g22810(AP2EREBP)	A_WT_S1
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	0.01	-6.042	0.0049	8458	7.69%	8023.7	7.47%	KANADI1(Myb)	A_WT_S1
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	0.01	-6.018	0.0051	9148	8.32%	8689.2	8.09%	VND6(NAC)	A_WT_S1
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	0.01	-5.917	0.0056	3744	3.41%	3498	3.26%	AIL7(AP2EREBP)	A_WT_S1
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	0.01	-5.847	0.006	2331	2.12%	2152	2.00%	NRF(NRF)	A_WT_S1
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	0.01	-5.708	0.0069	1460	1.33%	1328.2	1.24%	JKD(C2H2)	A_WT_S1
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	0.01	-5.666	0.0071	5386	4.90%	5076.7	4.73%	ATHB5(HB)	A_WT_S1
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	0.01	-5.601	0.0076	3176	2.89%	2960.2	2.76%	Prop1(Homeobox)	A_WT_S1
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	0.01	-5.561	0.0079	4621	4.20%	4344.5	4.04%	NTM1(NAC)	A_WT_S1
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	0.01	-5.549	0.008	2000	1.82%	1841.7	1.71%	HOXA1(Homeobox)	A_WT_S1
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	0.01	-5.541	0.008	23900	21.74%	23000.3	21.41%	Znf263(Zf)	A_WT_S1
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	0.01	-5.519	0.0082	915	0.83%	818.1	0.76%	RAP21(AP2EREBP)	A_WT_S1
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	0.01	-5.501	0.0083	11368	10.34%	10849.4	10.10%	CRF10(AP2EREBP)	A_WT_S1
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	0.01	-5.486	0.0084	21393	19.46%	20567.9	19.14%	Hoxd11(Homeobox)	A_WT_S1
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	0.01	-5.414	0.009	6216	5.65%	5880	5.47%	MYB116(MYB)	A_WT_S1
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	0.01	-5.284	0.0103	583	0.53%	511.8	0.48%	SPL13(SBP)	A_WT_S1
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	0.01	-5.255	0.0105	7252	6.60%	6882.6	6.41%	bHLH130(bHLH)	A_WT_S1
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	0.01	-5.201	0.0111	289	0.26%	242	0.23%	SPL3(SBP)	A_WT_S1
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	0.01	-5.122	0.012	9904	9.01%	9446.5	8.79%	AT1G72740(MYBrelated)	A_WT_S1
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	0.01	-5.079	0.0125	1584	1.44%	1453.2	1.35%	TOD6?	A_WT_S1
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	0.01	-5.077	0.0125	935	0.85%	841.6	0.78%	HDG7(HB)	A_WT_S1
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	0.01	-5.031	0.0131	4841	4.40%	4567.4	4.25%	Unknown6	A_WT_S1
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	0.01	-4.986	0.0136	22813	20.75%	21969.7	20.45%	Nkx2.2(Homeobox)	A_WT_S1
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	0.01	-4.964	0.0139	7482	6.80%	7112.9	6.62%	Npas4(bHLH)	A_WT_S1
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	0.01	-4.929	0.0144	20022	18.21%	19260.1	17.93%	Hoxa11(Homeobox)	A_WT_S1
"HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer"	CARRGKBCAAAGTYCA	0.01	-4.845	0.0156	5032	4.58%	4755	4.43%	"HNF4a(NR),DR1"	A_WT_S1
"Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer"	GTCATGCHTGRCTGS	0.01	-4.805	0.0162	4438	4.04%	4185	3.90%	"Pax8(Paired,Homeobox)"	A_WT_S1
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	0.01	-4.794	0.0164	1777	1.62%	1640.6	1.53%	DREB26(AP2EREBP)	A_WT_S1
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	0.01	-4.791	0.0164	512	0.47%	449.1	0.42%	E2F(E2F)	A_WT_S1
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	0.01	-4.767	0.0168	2658	2.42%	2480.7	2.31%	Brachyury(T-box)	A_WT_S1
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	0.01	-4.677	0.0183	5757	5.24%	5457.7	5.08%	c-Myc(bHLH)	A_WT_S1
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	0.01	-4.639	0.019	2801	2.55%	2619.7	2.44%	At1g78700(BZR)	A_WT_S1
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	0.01	-4.634	0.019	29442	26.78%	28436	26.47%	OBP3(C2C2dof)	A_WT_S1
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	0.1	-4.584	0.02	2848	2.59%	2665.4	2.48%	STAT1(Stat)	A_WT_S1
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	0.1	-4.58	0.02	5555	5.05%	5265.4	4.90%	MafB(bZIP)	A_WT_S1
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	0.1	-4.552	0.0205	10059	9.15%	9615.6	8.95%	ERF8(AP2EREBP)	A_WT_S1
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	0.1	-4.541	0.0207	2085	1.90%	1937.5	1.80%	HRE(HSF)	A_WT_S1
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	0.1	-4.523	0.0211	1736	1.58%	1605.2	1.49%	DEAR3(AP2EREBP)	A_WT_S1
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	0.1	-4.515	0.0212	32	0.03%	20.9	0.02%	bZIP42(bZIP)	A_WT_S1
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	0.1	-4.474	0.022	4431	4.03%	4186.1	3.90%	ATHB6(Homeobox)	A_WT_S1
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	0.1	-4.326	0.0255	18267	16.61%	17583.4	16.37%	ASL18(LOBAS2)	A_WT_S1
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	0.1	-4.324	0.0255	848	0.77%	767.3	0.71%	HAT1(Homeobox)	A_WT_S1
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	0.1	-4.139	0.0306	4197	3.82%	3969.1	3.69%	CELF2(RRM)	A_WT_S1
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	0.1	-4.103	0.0317	803	0.73%	727.8	0.68%	HOXA2(Homeobox)	A_WT_S1
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	0.1	-4.059	0.033	204	0.19%	171.3	0.16%	DDF2(AP2EREBP)	A_WT_S1
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	0.1	-4.018	0.0344	853	0.78%	775	0.72%	ATHB18(Homeobox)	A_WT_S1
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	0.1	-3.992	0.0352	13656	12.42%	13122.6	12.21%	AT5G05550(Trihelix)	A_WT_S1
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	0.1	-3.974	0.0358	5151	4.68%	4892.9	4.55%	Unknown5	A_WT_S1
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	0.1	-3.803	0.0424	12792	11.63%	12292.8	11.44%	COG1(C2C2dof)	A_WT_S1
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	0.1	-3.799	0.0424	543	0.49%	487	0.45%	At4g32800(AP2EREBP)	A_WT_S1
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	0.1	-3.78	0.0431	742	0.67%	673	0.63%	NUC(C2H2)	A_WT_S1
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	0.1	-3.691	0.0471	1250	1.14%	1155.7	1.08%	At1g77640(AP2EREBP)	A_WT_S1
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	0.1	-3.653	0.0488	12777	11.62%	12284.5	11.43%	Hoxd13(Homeobox)	A_WT_S1
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	0.1	-3.638	0.0495	914	0.83%	837.9	0.78%	Phox2b(Homeobox)	A_WT_S1
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	0.1	-3.631	0.0497	20326	18.49%	19619.3	18.26%	AT3G52440(C2C2dof)	A_WT_S1
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	0.1	-3.627	0.0498	415	0.38%	368.9	0.34%	AT1G01250(AP2EREBP)	A_WT_S1
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	0.1	-3.621	0.05	8706	7.92%	8339.8	7.76%	ERF11(AP2EREBP)	A_WT_S1
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	0	-23600	0	15817	14.22%	1500.8	1.38%	CTCF(Zf)	A_WT_S2
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	0	-18240	0	16497	14.83%	2418.8	2.22%	BORIS(Zf)	A_WT_S2
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	0	-3757	0	7481	6.73%	2256.8	2.07%	SpiB(ETS)	A_WT_S2
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	0	-3621	0	12934	11.63%	5576.5	5.13%	PU.1(ETS)	A_WT_S2
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	0	-2818	0	15739	14.15%	8214.9	7.55%	ELF5(ETS)	A_WT_S2
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	0	-2720	0	20942	18.83%	12252.7	11.26%	Elf4(ETS)	A_WT_S2
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	0	-2583	0	20311	18.26%	11939.2	10.98%	ETS1(ETS)	A_WT_S2
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	0	-2186	0	17717	15.93%	10448	9.60%	Etv2(ETS)	A_WT_S2
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	0	-2165	0	9231	8.30%	4269.9	3.93%	NF1(CTF)	A_WT_S2
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	0	-2134	0	17742	15.95%	10537.2	9.69%	GABPA(ETS)	A_WT_S2
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	0	-2101	0	14429	12.97%	8045.5	7.40%	ELF3(ETS)	A_WT_S2
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	0	-2097	0	27141	24.40%	18243.8	16.77%	ERG(ETS)	A_WT_S2
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	0	-1974	0	20733	18.64%	13151.2	12.09%	Fli1(ETS)	A_WT_S2
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	0	-1871	0	22239	19.99%	14552	13.38%	EHF(ETS)	A_WT_S2
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	0	-1722	0	6929	6.23%	3107.5	2.86%	Ets1-distal(ETS)	A_WT_S2
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	0	-1606	0	24795	22.29%	17184.4	15.80%	ETV1(ETS)	A_WT_S2
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	0	-1563	0	4533	4.08%	1717.5	1.58%	PU.1:IRF8(ETS:IRF)	A_WT_S2
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	0	-1555	0	24065	21.64%	16667.6	15.32%	Sox10(HMG)	A_WT_S2
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	0	-1527	0	6388	5.74%	2910.1	2.68%	IRF8(IRF)	A_WT_S2
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	0	-1525	0	30136	27.09%	21978.1	20.20%	NF1-halfsite(CTF)	A_WT_S2
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	0	-1505	0	10593	9.52%	5904.8	5.43%	ELF1(ETS)	A_WT_S2
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	0	-1450	0	24954	22.44%	17642.4	16.22%	Sox3(HMG)	A_WT_S2
ETS(ETS)/Promoter/Homer	AACCGGAAGT	0	-1298	0	7329	6.59%	3768.6	3.46%	ETS(ETS)	A_WT_S2
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	0	-1214	0	15404	13.85%	10105.6	9.29%	Sox15(HMG)	A_WT_S2
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	0	-1210	0	13693	12.31%	8729.8	8.03%	Sox2(HMG)	A_WT_S2
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	0	-1186	0	25123	22.59%	18388.7	16.90%	Sox21(HMG)	A_WT_S2
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	0	-1172	0	20032	18.01%	14040.4	12.91%	ETV4(ETS)	A_WT_S2
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	0	-1159	0	11647	10.47%	7189.4	6.61%	EWS:ERG-fusion(ETS)	A_WT_S2
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	0	-1143	0	14161	12.73%	9223	8.48%	Sox9(HMG)	A_WT_S2
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	0	-1137	0	13320	11.98%	8555.8	7.87%	Sox4(HMG)	A_WT_S2
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	0	-1131	0	19929	17.92%	14042.7	12.91%	PU.1-IRF(ETS:IRF)	A_WT_S2
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	0	-1131	0	21415	19.25%	15311.1	14.08%	Sox6(HMG)	A_WT_S2
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	0	-1007	0	10671	9.59%	6663.2	6.13%	Sox17(HMG)	A_WT_S2
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	0	-940.4	0	966	0.87%	156.7	0.14%	CTCF-SatelliteElement(Zf?)	A_WT_S2
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	0	-854.7	0	8991	8.08%	5588.4	5.14%	Tlx?(NR)	A_WT_S2
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	0	-831.5	0	34181	30.73%	27536.2	25.31%	HIC1(Zf)	A_WT_S2
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	0	-813.2	0	4961	4.46%	2609.4	2.40%	IRF3(IRF)	A_WT_S2
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	0	-765.2	0	9567	8.60%	6198.2	5.70%	Elk4(ETS)	A_WT_S2
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	9.99999998481684e-316	-725.7	0	9815	8.82%	6471.1	5.95%	EWS:FLI1-fusion(ETS)	A_WT_S2
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1.00E-283	-653.9	0	6223	5.59%	3753.9	3.45%	NFIL3(bZIP)	A_WT_S2
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1.00E-282	-651.2	0	11288	10.15%	7834.9	7.20%	Bcl11a(Zf)	A_WT_S2
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1.00E-278	-642	0	5588	5.02%	3286.8	3.02%	Sp1(Zf)	A_WT_S2
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1.00E-276	-635.6	0	2044	1.84%	814.7	0.75%	Rfx2(HTH)	A_WT_S2
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1.00E-272	-626.7	0	1908	1.72%	738.1	0.68%	RFX(HTH)	A_WT_S2
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1.00E-272	-626.7	0	16556	14.89%	12386.2	11.39%	Sp5(Zf)	A_WT_S2
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1.00E-265	-611.9	0	4652	4.18%	2626.8	2.41%	CREB5(bZIP)	A_WT_S2
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1.00E-261	-601.5	0	9898	8.90%	6790.8	6.24%	Elk1(ETS)	A_WT_S2
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1.00E-254	-586.2	0	7062	6.35%	4520.6	4.16%	Fos(bZIP)	A_WT_S2
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1.00E-240	-554.8	0	7980	7.17%	5316.3	4.89%	Atf3(bZIP)	A_WT_S2
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1.00E-237	-545.8	0	5992	5.39%	3747	3.44%	Fra2(bZIP)	A_WT_S2
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1.00E-235	-543.3	0	5974	5.37%	3736.1	3.43%	Atf7(bZIP)	A_WT_S2
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1.00E-234	-539.1	0	6654	5.98%	4280.7	3.94%	Fra1(bZIP)	A_WT_S2
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1.00E-233	-538	0	15547	13.98%	11764.9	10.82%	SPDEF(ETS)	A_WT_S2
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1.00E-232	-535.7	0	8965	8.06%	6162.6	5.67%	AP-1(bZIP)	A_WT_S2
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1.00E-224	-517.4	0	4542	4.08%	2673.7	2.46%	Fosl2(bZIP)	A_WT_S2
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1.00E-223	-515.6	0	8719	7.84%	6003.3	5.52%	THRb(NR)	A_WT_S2
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1.00E-223	-514.9	0	13203	11.87%	9797.9	9.01%	NeuroD1(bHLH)	A_WT_S2
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1.00E-218	-504.2	0	6676	6.00%	4362.6	4.01%	JunB(bZIP)	A_WT_S2
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1.00E-217	-501	0	2410	2.17%	1155.4	1.06%	IRF1(IRF)	A_WT_S2
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1.00E-216	-498.5	0	4474	4.02%	2650	2.44%	Atf2(bZIP)	A_WT_S2
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1.00E-214	-494.4	0	3413	3.07%	1866.2	1.72%	Jun-AP1(bZIP)	A_WT_S2
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1.00E-202	-467.1	0	4077	3.67%	2394.2	2.20%	c-Jun-CRE(bZIP)	A_WT_S2
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1.00E-201	-462.9	0	7745	6.96%	5315.8	4.89%	Atf1(bZIP)	A_WT_S2
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1.00E-200	-461.4	0	7798	7.01%	5362.3	4.93%	BATF(bZIP)	A_WT_S2
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1.00E-191	-441.7	0	4743	4.26%	2944.7	2.71%	Sox7(HMG)	A_WT_S2
"GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer"	VAGRACAKWCTGTYC	1.00E-189	-435.4	0	3685	3.31%	2144.6	1.97%	"GRE(NR),IR3"	A_WT_S2
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1.00E-187	-431.2	0	2015	1.81%	954.9	0.88%	Mef2d(MADS)	A_WT_S2
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1.00E-185	-427.5	0	16371	14.72%	12846.9	11.81%	Tcf12(bHLH)	A_WT_S2
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1.00E-185	-426.2	0	2023	1.82%	964.9	0.89%	X-box(HTH)	A_WT_S2
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1.00E-183	-423.2	0	3930	3.53%	2347.5	2.16%	Mef2c(MADS)	A_WT_S2
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1.00E-179	-413.8	0	19523	17.55%	15719.4	14.45%	Ap4(bHLH)	A_WT_S2
"GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer"	NRGVACABNVTGTYCY	1.00E-179	-413.5	0	2358	2.12%	1206.6	1.11%	"GRE(NR),IR3"	A_WT_S2
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1.00E-177	-409.2	0	11961	10.75%	9030.6	8.30%	MITF(bHLH)	A_WT_S2
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1.00E-174	-402.7	0	1888	1.70%	895.7	0.82%	IRF2(IRF)	A_WT_S2
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1.00E-170	-392.9	0	1497	1.35%	648.9	0.60%	RORg(NR)	A_WT_S2
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1.00E-167	-385.1	0	62309	56.02%	56446	51.89%	At3g60580(C2H2)	A_WT_S2
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1.00E-165	-381.4	0	437	0.39%	80	0.07%	REST-NRSF(Zf)	A_WT_S2
"ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer"	RCAGGATGTGGT	1.00E-162	-373.2	0	1761	1.58%	837.6	0.77%	"ETS:RUNX(ETS,Runt)"	A_WT_S2
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1.00E-161	-371.9	0	67829	60.98%	61975.7	56.97%	AZF1(C2H2)	A_WT_S2
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1.00E-160	-370.7	0	24074	21.64%	20047.6	18.43%	Foxo1(Forkhead)	A_WT_S2
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1.00E-160	-370.6	0	3295	2.96%	1943.6	1.79%	PGR(NR)	A_WT_S2
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1.00E-160	-369.2	0	9365	8.42%	6909	6.35%	Unknown-ESC-element(?)	A_WT_S2
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1.00E-158	-364.1	0	9662	8.69%	7178.6	6.60%	Zic3(Zf)	A_WT_S2
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1.00E-155	-358.2	0	1468	1.32%	657.5	0.60%	JunD(bZIP)	A_WT_S2
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1.00E-153	-354	0	7632	6.86%	5478.5	5.04%	HLF(bZIP)	A_WT_S2
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1.00E-153	-353.1	0	3434	3.09%	2075.2	1.91%	Rfx1(HTH)	A_WT_S2
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1.00E-153	-352.7	0	41374	37.20%	36365.1	33.43%	Tgif2(Homeobox)	A_WT_S2
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1.00E-148	-342.9	0	2061	1.85%	1074.9	0.99%	RORa(NR)	A_WT_S2
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1.00E-147	-339.9	0	22258	20.01%	18521.4	17.03%	Sp2(Zf)	A_WT_S2
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1.00E-147	-339.5	0	4108	3.69%	2622.5	2.41%	Usf2(bHLH)	A_WT_S2
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1.00E-145	-335.5	0	17135	15.41%	13878.9	12.76%	Atoh1(bHLH)	A_WT_S2
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1.00E-141	-326.1	0	63932	57.48%	58407.9	53.69%	SCL(bHLH)	A_WT_S2
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1.00E-139	-320.4	0	15256	13.72%	12249.1	11.26%	Tcf21(bHLH)	A_WT_S2
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1.00E-137	-317.3	0	2915	2.62%	1734.6	1.59%	Bach2(bZIP)	A_WT_S2
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1.00E-133	-307.8	0	1357	1.22%	627.3	0.58%	TGA5(bZIP)	A_WT_S2
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1.00E-133	-307.2	0	8049	7.24%	5959.2	5.48%	KLF3(Zf)	A_WT_S2
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1.00E-129	-298.9	0	22119	19.89%	18589.4	17.09%	NeuroG2(bHLH)	A_WT_S2
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1.00E-128	-296.9	0	1973	1.77%	1064.4	0.98%	RORgt(NR)	A_WT_S2
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1.00E-128	-296.9	0	1973	1.77%	1064.4	0.98%	RORgt(NR)	A_WT_S2
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1.00E-128	-296.3	0	4012	3.61%	2626.9	2.41%	Mef2a(MADS)	A_WT_S2
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1.00E-126	-292.2	0	19600	17.62%	16309.2	14.99%	bZIP52(bZIP)	A_WT_S2
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1.00E-125	-289.1	0	20765	18.67%	17392	15.99%	BHLHA15(bHLH)	A_WT_S2
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1.00E-124	-287.4	0	7654	6.88%	5678.9	5.22%	Mef2b(MADS)	A_WT_S2
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1.00E-124	-287	0	15664	14.08%	12754.2	11.73%	Rfx6(HTH)	A_WT_S2
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1.00E-123	-284.5	0	4418	3.97%	2977.1	2.74%	ARE(NR)	A_WT_S2
SeqBias: GA-repeat	GAGAGAGAGA	1.00E-120	-276.4	0	77665	69.83%	72394.8	66.55%	SeqBias: GA-repeat	A_WT_S2
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1.00E-119	-276.2	0	13837	12.44%	11155.3	10.26%	KLF1(Zf)	A_WT_S2
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1.00E-117	-270.6	0	5051	4.54%	3527	3.24%	E2FA(E2FDP)	A_WT_S2
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1.00E-115	-267	0	4426	3.98%	3021	2.78%	TGA1(bZIP)	A_WT_S2
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1.00E-115	-265.3	0	516	0.46%	151.2	0.14%	Ronin(THAP)	A_WT_S2
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1.00E-114	-262.6	0	9333	8.39%	7211.3	6.63%	bZIP50(bZIP)	A_WT_S2
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1.00E-107	-248.3	0	5590	5.03%	4033.8	3.71%	TGA10(bZIP)	A_WT_S2
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1.00E-105	-243.3	0	41289	37.12%	36976.7	33.99%	Smad3(MAD)	A_WT_S2
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1.00E-104	-240.6	0	910	0.82%	393.3	0.36%	TGA3(bZIP)	A_WT_S2
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1.00E-103	-238.4	0	5690	5.12%	4144.5	3.81%	TGA6(bZIP)	A_WT_S2
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1.00E-102	-236.2	0	5685	5.11%	4146.2	3.81%	USF1(bHLH)	A_WT_S2
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1.00E-102	-235	0	21969	19.75%	18787.9	17.27%	TCF4(bHLH)	A_WT_S2
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1.00E-100	-230.8	0	29713	26.71%	26056.4	23.95%	PR(NR)	A_WT_S2
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1.00E-100	-230.4	0	5074	4.56%	3646.8	3.35%	Rfx5(HTH)	A_WT_S2
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1.00E-95	-219.2	0	9157	8.23%	7212.6	6.63%	RUNX-AML(Runt)	A_WT_S2
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1.00E-94	-218.5	0	9265	8.33%	7310.3	6.72%	RUNX(Runt)	A_WT_S2
SeqBias: polyA-repeat	AAAAAAAAAA	1.00E-92	-212.6	0	108481	97.53%	104926.8	96.46%	SeqBias: polyA-repeat	A_WT_S2
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1.00E-90	-209	0	17575	15.80%	14871.1	13.67%	BMYB(HTH)	A_WT_S2
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1.00E-90	-207.9	0	1020	0.92%	493.3	0.45%	NF-E2(bZIP)	A_WT_S2
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1.00E-89	-205.5	0	860	0.77%	389.2	0.36%	Nrf2(bZIP)	A_WT_S2
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1.00E-88	-203.2	0	3040	2.73%	2031.2	1.87%	TGA4(bZIP)	A_WT_S2
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1.00E-86	-199.4	0	26221	23.57%	22975.3	21.12%	Olig2(bHLH)	A_WT_S2
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1.00E-85	-197.3	0	20604	18.52%	17739.3	16.31%	COUP-TFII(NR)	A_WT_S2
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1.00E-84	-195.2	0	1223	1.10%	647.7	0.60%	TFE3(bHLH)	A_WT_S2
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1.00E-84	-194.7	0	985	0.89%	482.2	0.44%	ISRE(IRF)	A_WT_S2
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1.00E-83	-192.5	0	942	0.85%	455.6	0.42%	Bach1(bZIP)	A_WT_S2
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1.00E-82	-190.5	0	11557	10.39%	9476.3	8.71%	TGA9(bZIP)	A_WT_S2
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1.00E-81	-187.6	0	6429	5.78%	4933.1	4.54%	CEBP(bZIP)	A_WT_S2
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1.00E-80	-186.4	0	25136	22.60%	22043.6	20.26%	KLF14(Zf)	A_WT_S2
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1.00E-79	-183	0	13653	12.28%	11415	10.49%	LHX9(Homeobox)	A_WT_S2
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1.00E-78	-181.1	0	3253	2.92%	2253.2	2.07%	Cbf1(bHLH)	A_WT_S2
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1.00E-78	-180.8	0	24459	21.99%	21445.7	19.72%	MYB88(MYB)	A_WT_S2
SeqBias: C/A-bias	MMMMMMMMMM	1.00E-77	-179.3	0	111175	99.95%	108463.6	99.71%	SeqBias: C	A_WT_S2
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1.00E-76	-176.1	0	17917	16.11%	15374.5	14.13%	TF3A(C2H2)	A_WT_S2
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1.00E-75	-172.9	0	70762	63.62%	66290.8	60.94%	STZ(C2H2)	A_WT_S2
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1.00E-74	-171.1	0	7096	6.38%	5576.2	5.13%	Zic2(Zf)	A_WT_S2
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1.00E-73	-168.1	0	18696	16.81%	16145.2	14.84%	AMYB(HTH)	A_WT_S2
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1.00E-72	-167.1	0	5267	4.74%	3995	3.67%	IRF4(IRF)	A_WT_S2
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1.00E-71	-165.4	0	17765	15.97%	15298.5	14.06%	En1(Homeobox)	A_WT_S2
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1.00E-71	-164.9	0	12846	11.55%	10773.9	9.90%	MyoD(bHLH)	A_WT_S2
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1.00E-71	-164.8	0	68402	61.50%	64025.3	58.86%	At5g04390(C2H2)	A_WT_S2
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1.00E-71	-163.5	0	10331	9.29%	8496.8	7.81%	RUNX2(Runt)	A_WT_S2
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1.00E-69	-160.7	0	4975	4.47%	3763.2	3.46%	TGA2(bZIP)	A_WT_S2
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1.00E-68	-157.8	0	20935	18.82%	18300.8	16.82%	MYB(HTH)	A_WT_S2
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1.00E-67	-154.5	0	1408	1.27%	836.5	0.77%	Unknown3	A_WT_S2
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1.00E-64	-149.3	0	14090	12.67%	12000.4	11.03%	MYB81(MYB)	A_WT_S2
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1.00E-63	-146.7	0	1105	0.99%	621.2	0.57%	E-box(bHLH)	A_WT_S2
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1.00E-63	-146.1	0	49307	44.33%	45499.6	41.83%	GAGA-repeat	A_WT_S2
"Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer"	NNNVCTGWGYAAACASN	1.00E-63	-146.1	0	11633	10.46%	9766.3	8.98%	"Fox:Ebox(Forkhead,bHLH)"	A_WT_S2
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1.00E-62	-144.6	0	73922	66.46%	69681.1	64.06%	SUT1?	A_WT_S2
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1.00E-62	-144	0	5604	5.04%	4367.9	4.02%	Hoxa10(Homeobox)	A_WT_S2
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1.00E-62	-143.3	0	19824	17.82%	17361.9	15.96%	GLIS3(Zf)	A_WT_S2
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1.00E-59	-138	0	18712	16.82%	16359.1	15.04%	Maz(Zf)	A_WT_S2
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1.00E-59	-137.7	0	25415	22.85%	22662	20.83%	Twist2(bHLH)	A_WT_S2
"Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer"	CCATTGTATGCAAAT	1.00E-59	-137.2	0	1369	1.23%	833.9	0.77%	"Oct4:Sox17(POU,Homeobox,HMG)"	A_WT_S2
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1.00E-59	-136.8	0	2855	2.57%	2031.5	1.87%	CRE(bZIP)	A_WT_S2
"ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer"	AGGAARCAGCTG	1.00E-58	-135.1	0	1383	1.24%	847.8	0.78%	"ETS:E-box(ETS,bHLH)"	A_WT_S2
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1.00E-58	-134.7	0	22518	20.25%	19952.2	18.34%	NLP7(RWPRK)	A_WT_S2
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1.00E-57	-133	0	2609	2.35%	1836.9	1.69%	Atf4(bZIP)	A_WT_S2
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1.00E-57	-132.9	0	8155	7.33%	6681	6.14%	REF6(Zf)	A_WT_S2
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1.00E-56	-130.1	0	27634	24.84%	24827.5	22.82%	Initiator	A_WT_S2
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1.00E-51	-119.4	0	9546	8.58%	8008.7	7.36%	Lhx2(Homeobox)	A_WT_S2
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1.00E-51	-118.1	0	1485	1.34%	956.7	0.88%	BIM3(bHLH)	A_WT_S2
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1.00E-50	-116.3	0	3337	3.00%	2496.2	2.29%	AT2G31460(REMB3)	A_WT_S2
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1.00E-50	-115.7	0	6779	6.09%	5525.1	5.08%	Foxo3(Forkhead)	A_WT_S2
GFY(?)/Promoter/Homer	ACTACAATTCCC	1.00E-49	-114.8	0	933	0.84%	537	0.49%	GFY(?)	A_WT_S2
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1.00E-48	-111.2	0	5054	4.54%	4009.6	3.69%	E2F4(E2F)	A_WT_S2
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1.00E-48	-111	0	7245	6.51%	5966.7	5.49%	SGR5(C2H2)	A_WT_S2
SeqBias: GCW-triplet	GCWGCWGCWGCW	1.00E-47	-110.4	0	111211	99.99%	108623	99.86%	SeqBias: GCW-triplet	A_WT_S2
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1.00E-46	-107.5	0	14333	12.89%	12492.5	11.48%	MYB77(MYB)	A_WT_S2
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1.00E-44	-103.6	0	12209	10.98%	10549.2	9.70%	MafA(bZIP)	A_WT_S2
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1.00E-44	-102.8	0	18382	16.53%	16314.7	15.00%	MYB73(MYB)	A_WT_S2
SeqBias: CG bias	SSSSSSSSSS	1.00E-44	-101.3	0	94715	85.16%	90963.3	83.62%	SeqBias: CG bias	A_WT_S2
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1.00E-43	-100.9	0	9005	8.10%	7618.7	7.00%	Stat3+il21(Stat)	A_WT_S2
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1.00E-43	-100.6	0	7390	6.64%	6150	5.65%	CEBP:AP1(bZIP)	A_WT_S2
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1.00E-42	-97.55	0	1948	1.75%	1376.5	1.27%	Chop(bZIP)	A_WT_S2
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1.00E-42	-96.99	0	6101	5.49%	5005.7	4.60%	FOXK2(Forkhead)	A_WT_S2
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1.00E-41	-96.63	0	6735	6.06%	5578.7	5.13%	AGL63(MADS)	A_WT_S2
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1.00E-41	-96.49	0	51635	46.42%	48285.4	44.39%	AR-halfsite(NR)	A_WT_S2
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1.00E-41	-96.42	0	4992	4.49%	4016.4	3.69%	Dlx3(Homeobox)	A_WT_S2
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1.00E-41	-96.14	0	9102	8.18%	7735.7	7.11%	LBD23(LOBAS2)	A_WT_S2
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1.00E-41	-95.76	0	19158	17.22%	17104	15.72%	ZNF416(Zf)	A_WT_S2
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1.00E-41	-94.74	0	10845	9.75%	9347.6	8.59%	Myf5(bHLH)	A_WT_S2
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1.00E-40	-92.97	0	1268	1.14%	832.4	0.77%	IRF:BATF(IRF:bZIP)	A_WT_S2
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1.00E-39	-91.71	0	11408	10.26%	9888.7	9.09%	FEA4(bZIP)	A_WT_S2
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1.00E-39	-91.32	0	6334	5.69%	5243.6	4.82%	CLOCK(bHLH)	A_WT_S2
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1.00E-39	-90.7	0	2711	2.44%	2040.4	1.88%	bHLH74(bHLH)	A_WT_S2
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1.00E-39	-90.33	0	37122	33.38%	34297.8	31.53%	Trl(Zf)	A_WT_S2
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1.00E-39	-90.13	0	5216	4.69%	4244.7	3.90%	THRa(NR)	A_WT_S2
Tal1	CATCTG	1.00E-38	-87.64	0	18214	16.38%	16284.7	14.97%	Tal1	A_WT_S2
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1.00E-37	-87.05	0	6793	6.11%	5681.8	5.22%	HY5(bZIP)	A_WT_S2
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1.00E-37	-86.95	0	4085	3.67%	3252.4	2.99%	WUS1(Homeobox)	A_WT_S2
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1.00E-37	-86.81	0	6254	5.62%	5194.5	4.78%	Klf9(Zf)	A_WT_S2
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1.00E-37	-86.5	0	45732	41.12%	42667.4	39.22%	Nanog(Homeobox)	A_WT_S2
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1.00E-37	-86.02	0	28238	25.39%	25819.7	23.74%	ERF15(AP2EREBP)	A_WT_S2
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1.00E-37	-85.3	0	3164	2.84%	2450.1	2.25%	SOC1(MADS)	A_WT_S2
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1.00E-36	-85.11	0	4056	3.65%	3234.5	2.97%	FOXP1(Forkhead)	A_WT_S2
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1.00E-36	-85.05	0	36437	32.76%	33698.4	30.98%	Tgif1(Homeobox)	A_WT_S2
"GFY-Staf(?,Zf)/Promoter/Homer"	RACTACAATTCCCAGAAKGC	1.00E-36	-84.87	0	754	0.68%	446.7	0.41%	"GFY-Staf(?,Zf)"	A_WT_S2
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1.00E-36	-84.68	0	20998	18.88%	18942.1	17.41%	MYB101(MYB)	A_WT_S2
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1.00E-36	-84.5	0	3538	3.18%	2780.2	2.56%	E-box	A_WT_S2
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1.00E-35	-81.36	0	11305	10.16%	9866.5	9.07%	SPCH(bHLH)	A_WT_S2
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1.00E-34	-79.99	0	2142	1.93%	1587.7	1.46%	PIF7(bHLH)	A_WT_S2
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1.00E-34	-79.89	0	7738	6.96%	6584.6	6.05%	Foxa2(Forkhead)	A_WT_S2
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1.00E-33	-77.49	0	6223	5.59%	5216.7	4.80%	Stat3(Stat)	A_WT_S2
"Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer"	WATGCAAATGAG	1.00E-32	-75.56	0	3868	3.48%	3108.3	2.86%	"Oct6(POU,Homeobox)"	A_WT_S2
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1.00E-31	-73.2	0	10779	9.69%	9438.2	8.68%	STAT4(Stat)	A_WT_S2
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1.00E-31	-72.81	0	22910	20.60%	20878.8	19.19%	Nkx6.1(Homeobox)	A_WT_S2
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1.00E-31	-72.32	0	12978	11.67%	11497.7	10.57%	RUNX1(Runt)	A_WT_S2
"Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer"	TATGCWAATBAV	1.00E-31	-71.49	0	2866	2.58%	2241.4	2.06%	"Brn1(POU,Homeobox)"	A_WT_S2
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1.00E-30	-70.3	0	9486	8.53%	8259.9	7.59%	FOXK1(Forkhead)	A_WT_S2
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1.00E-30	-69.85	0	15800	14.21%	14170.7	13.03%	At1g75490(AP2EREBP)	A_WT_S2
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1.00E-30	-69.63	0	2875	2.58%	2256.4	2.07%	VIP1(bZIP)	A_WT_S2
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1.00E-30	-69.63	0	837	0.75%	535.3	0.49%	NFE2L2(bZIP)	A_WT_S2
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1.00E-30	-69.23	0	11693	10.51%	10321.2	9.49%	Zic(Zf)	A_WT_S2
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1.00E-29	-68.46	0	7474	6.72%	6414.8	5.90%	Foxf1(Forkhead)	A_WT_S2
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1.00E-29	-67.51	0	17648	15.87%	15938.3	14.65%	JGL(C2H2)	A_WT_S2
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1.00E-29	-67.5	0	5382	4.84%	4508.1	4.14%	STAT6(Stat)	A_WT_S2
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1.00E-28	-66.53	0	18077	16.25%	16354.9	15.04%	KLF5(Zf)	A_WT_S2
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1.00E-27	-64.38	0	22188	19.95%	20283.7	18.65%	AT5G23930(mTERF)	A_WT_S2
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1.00E-27	-64.3	0	22679	20.39%	20752.7	19.08%	Smad4(MAD)	A_WT_S2
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1.00E-27	-64.2	0	2829	2.54%	2237.2	2.06%	M1BP(Zf)	A_WT_S2
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1.00E-27	-63.74	0	1380	1.24%	990.2	0.91%	Unknown3	A_WT_S2
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1.00E-27	-63.65	0	34225	30.77%	31833.9	29.27%	PHA-4(Forkhead)	A_WT_S2
SeqBias: G/A bias	RRRRRRRRRR	1.00E-27	-62.84	0	111156	99.94%	108576.8	99.82%	SeqBias: G	A_WT_S2
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1.00E-26	-61.92	0	13354	12.01%	11941.6	10.98%	MYB70(MYB)	A_WT_S2
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1.00E-26	-61.83	0	6973	6.27%	5997.9	5.51%	FoxL2(Forkhead)	A_WT_S2
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1.00E-26	-61.7	0	6202	5.58%	5290.2	4.86%	DLX5(Homeobox)	A_WT_S2
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1.00E-26	-60.14	0	13328	11.98%	11933.6	10.97%	DLX2(Homeobox)	A_WT_S2
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1.00E-26	-60.11	0	8269	7.43%	7206.4	6.62%	AtHB32(ZFHD)	A_WT_S2
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1.00E-25	-58.53	0	1209	1.09%	861.5	0.79%	BIM1(bHLH)	A_WT_S2
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1.00E-25	-58.38	0	2467	2.22%	1942.7	1.79%	Unknown1(NR	A_WT_S2
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1.00E-25	-57.87	0	3007	2.70%	2421.6	2.23%	Pknox1(Homeobox)	A_WT_S2
SeqBias: A/T bias	WWWWWWWWWW	1.00E-24	-57.16	0	85991	77.31%	82660.8	75.99%	SeqBias: A	A_WT_S2
"NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer"	WNTGTTTRYTTTGGCA	1.00E-24	-57.04	0	601	0.54%	373.5	0.34%	"NF1:FOXA1(CTF,Forkhead)"	A_WT_S2
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1.00E-24	-57.02	0	22186	19.95%	20367.3	18.72%	Smad2(MAD)	A_WT_S2
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1.00E-24	-56.41	0	14732	13.25%	13293.4	12.22%	Lhx3(Homeobox)	A_WT_S2
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1.00E-24	-56.28	0	3154	2.84%	2559.2	2.35%	Pbx3(Homeobox)	A_WT_S2
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1.00E-24	-56.22	0	16283	14.64%	14762.9	13.57%	MyoG(bHLH)	A_WT_S2
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1.00E-24	-56.07	0	13359	12.01%	12001.6	11.03%	EBF1(EBF)	A_WT_S2
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1.00E-23	-55.1	0	14756	13.27%	13329.5	12.25%	KLF6(Zf)	A_WT_S2
"NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer"	SARTGGAAAAWRTGAGTCAB	1.00E-23	-54.62	0	1697	1.53%	1286.2	1.18%	"NFAT:AP1(RHD,bZIP)"	A_WT_S2
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1.00E-23	-54.45	0	1998	1.80%	1547.7	1.42%	bZIP69(bZIP)	A_WT_S2
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1.00E-23	-53.32	0	9503	8.54%	8408.9	7.73%	Lhx1(Homeobox)	A_WT_S2
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1.00E-22	-51.75	0	2767	2.49%	2235.1	2.05%	Foxa3(Forkhead)	A_WT_S2
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1.00E-21	-50.43	0	10834	9.74%	9680.9	8.90%	FOXA1(Forkhead)	A_WT_S2
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1.00E-21	-49.43	0	2988	2.69%	2443.4	2.25%	bZIP48(bZIP)	A_WT_S2
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1.00E-20	-48.16	0	2725	2.45%	2214.9	2.04%	Zfp809(Zf)	A_WT_S2
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1.00E-20	-48.13	0	3397	3.05%	2817.1	2.59%	bHLHE40(bHLH)	A_WT_S2
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1.00E-20	-47.95	0	3624	3.26%	3023.3	2.78%	Zfp281(Zf)	A_WT_S2
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1.00E-20	-47.95	0	11127	10.00%	9979.2	9.17%	ZNF189(Zf)	A_WT_S2
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1.00E-20	-47.55	0	8465	7.61%	7488.1	6.88%	TBP3(MYBrelated)	A_WT_S2
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1.00E-20	-47.49	0	11921	10.72%	10731.1	9.87%	PIF5ox(bHLH)	A_WT_S2
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1.00E-20	-47.24	0	1164	1.05%	854.9	0.79%	AGL15(MADS)	A_WT_S2
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1.00E-20	-46.66	0	10833	9.74%	9715.2	8.93%	AT1G69570(C2C2dof)	A_WT_S2
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1.00E-20	-46.64	0	10854	9.76%	9735.9	8.95%	EBF2(EBF)	A_WT_S2
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1.00E-20	-46.37	0	11152	10.03%	10018.1	9.21%	MYB65(MYB)	A_WT_S2
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1.00E-20	-46.26	0	18962	17.05%	17424.7	16.02%	Isl1(Homeobox)	A_WT_S2
"Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer"	GATTTGCATA	1.00E-19	-44.25	0	2674	2.40%	2187.7	2.01%	"Oct11(POU,Homeobox)"	A_WT_S2
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1.00E-18	-43.7	0	5059	4.55%	4359.3	4.01%	Klf4(Zf)	A_WT_S2
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1.00E-18	-43.45	0	1878	1.69%	1484.3	1.36%	ABF2(bZIP)	A_WT_S2
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1.00E-18	-42.2	0	2298	2.07%	1861.1	1.71%	bZIP28(bZIP)	A_WT_S2
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1.00E-18	-41.61	0	181	0.16%	86	0.08%	GFX(?)	A_WT_S2
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1.00E-17	-41.16	0	6598	5.93%	5802.2	5.33%	GATA4(C2C2gata)	A_WT_S2
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1.00E-17	-41.1	0	8533	7.67%	7609.4	7.00%	FOXA1(Forkhead)	A_WT_S2
"Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer"	ATGAATATTC	1.00E-17	-40.93	0	698	0.63%	482.9	0.44%	"Brn2(POU,Homeobox)"	A_WT_S2
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1.00E-17	-40.85	0	70205	63.12%	67285.6	61.86%	bZIP18(bZIP)	A_WT_S2
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1.00E-17	-40	0	27455	24.68%	25654.3	23.58%	Nkx3.1(Homeobox)	A_WT_S2
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1.00E-17	-39.69	0	1178	1.06%	889.9	0.82%	PBX1(Homeobox)	A_WT_S2
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1.00E-17	-39.41	0	3718	3.34%	3158.5	2.90%	DREB19(AP2EREBP)	A_WT_S2
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1.00E-16	-38.54	0	6492	5.84%	5725.3	5.26%	NAP(NAC)	A_WT_S2
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1.00E-16	-38.27	0	3445	3.10%	2916.4	2.68%	DEL2(E2FDP)	A_WT_S2
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1.00E-16	-38.2	0	11558	10.39%	10487	9.64%	ZNF467(Zf)	A_WT_S2
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1.00E-16	-38.15	0	6023	5.42%	5293	4.87%	Hand2(bHLH)	A_WT_S2
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1.00E-16	-37.86	0	2143	1.93%	1743.4	1.60%	MYB119(MYB)	A_WT_S2
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1.00E-16	-37.57	0	2307	2.07%	1891.6	1.74%	MYB98(MYB)	A_WT_S2
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1.00E-16	-37.32	0	2535	2.28%	2097.1	1.93%	AREB3(bZIP)	A_WT_S2
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1.00E-16	-37.26	0	26704	24.01%	24975.3	22.96%	Hoxa9(Homeobox)	A_WT_S2
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1.00E-16	-37.13	0	2853	2.57%	2385.1	2.19%	bHLH34(bHLH)	A_WT_S2
"OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer"	ATGAATATTCATGAG	1.00E-15	-36.74	0	114	0.10%	46.9	0.04%	"OCT:OCT(POU,Homeobox)"	A_WT_S2
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1.00E-15	-36.63	0	5564	5.00%	4878.8	4.49%	STAT6(Stat)	A_WT_S2
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1.00E-15	-36.2	0	1752	1.58%	1403.6	1.29%	Dorsal(RHD)	A_WT_S2
"OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer"	ATGAATWATTCATGA	1.00E-15	-36.1	0	154	0.14%	72	0.07%	"OCT:OCT(POU,Homeobox,IR1)"	A_WT_S2
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1.00E-15	-36.02	0	4237	3.81%	3656.1	3.36%	ZNF322(Zf)	A_WT_S2
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1.00E-15	-35.92	0	16876	15.17%	15570.9	14.31%	Rbpj1(?)	A_WT_S2
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1.00E-15	-35.91	0	18128	16.30%	16766.8	15.41%	AT1G28160(AP2EREBP)	A_WT_S2
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1.00E-15	-35.34	0	1374	1.24%	1074.4	0.99%	ZNF675(Zf)	A_WT_S2
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1.00E-15	-35.27	0	1823	1.64%	1470.2	1.35%	GBF6(bZIP)	A_WT_S2
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1.00E-15	-34.73	0	1791	1.61%	1444.3	1.33%	MYB3R1(MYB)	A_WT_S2
"OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer"	ATGCATWATGCATRW	1.00E-15	-34.57	0	4895	4.40%	4274	3.93%	"OCT:OCT-short(POU,Homeobox)"	A_WT_S2
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1.00E-14	-34.2	0	2625	2.36%	2195.8	2.02%	bZIP53(bZIP)	A_WT_S2
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1.00E-14	-33.97	0	5110	4.59%	4478.1	4.12%	c-Myc(bHLH)	A_WT_S2
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1.00E-14	-33.57	0	705	0.63%	506.8	0.47%	AGL16(MADS)	A_WT_S2
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1.00E-14	-33.39	0	5133	4.61%	4504.9	4.14%	NFkB-p65(RHD)	A_WT_S2
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1.00E-14	-32.78	0	8620	7.75%	7773.7	7.15%	LIN-39(Homeobox)	A_WT_S2
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1.00E-14	-32.37	0	3342	3.00%	2859.1	2.63%	AT1G76870(Trihelix)	A_WT_S2
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1.00E-14	-32.31	0	11402	10.25%	10408.3	9.57%	DLX1(Homeobox)	A_WT_S2
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1.00E-13	-32.23	0	10155	9.13%	9228.7	8.48%	ATHB33(ZFHD)	A_WT_S2
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1.00E-13	-32.17	0	1779	1.60%	1445.7	1.33%	Hoxb4(Homeobox)	A_WT_S2
"LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer"	RGGTTACTANAGGTCA	1.00E-13	-32.14	0	551	0.50%	382	0.35%	"LXRE(NR),DR4"	A_WT_S2
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1.00E-13	-32.03	0	193	0.17%	103.5	0.10%	T1ISRE(IRF)	A_WT_S2
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1.00E-13	-31.98	0	856	0.77%	638.6	0.59%	AGL6(MADS)	A_WT_S2
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1.00E-13	-31.84	0	6202	5.58%	5513	5.07%	PRDM1(Zf)	A_WT_S2
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1.00E-13	-31.75	0	9166	8.24%	8299.9	7.63%	BIM2(bHLH)	A_WT_S2
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1.00E-13	-31.16	0	1068	0.96%	823.9	0.76%	MYB3R4(MYB)	A_WT_S2
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1.00E-13	-30.87	0	10739	9.66%	9797.5	9.01%	Hoxd10(Homeobox)	A_WT_S2
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1.00E-13	-30.69	0	2862	2.57%	2431.6	2.24%	bZIP68(bZIP)	A_WT_S2
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1.00E-13	-30.38	0	6925	6.23%	6204.5	5.70%	Gfi1b(Zf)	A_WT_S2
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1.00E-13	-30.34	0	1565	1.41%	1263.7	1.16%	bHLH28(bHLH)	A_WT_S2
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1.00E-13	-30.18	0	1918	1.72%	1579.2	1.45%	RRTF1(AP2EREBP)	A_WT_S2
"Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer"	AGGTGHCAGACA	1.00E-13	-30.02	0	2419	2.17%	2032.7	1.87%	"Tbox:Smad(T-box,MAD)"	A_WT_S2
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1.00E-13	-29.96	0	7541	6.78%	6787.3	6.24%	Npas4(bHLH)	A_WT_S2
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1.00E-12	-29.66	0	6620	5.95%	5925.7	5.45%	ZBTB18(Zf)	A_WT_S2
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1.00E-12	-29.32	0	2697	2.42%	2289.8	2.11%	GBF5(bZIP)	A_WT_S2
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1.00E-12	-29.08	0	7887	7.09%	7122.4	6.55%	Pdx1(Homeobox)	A_WT_S2
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1.00E-12	-29.08	0	16173	14.54%	14997.2	13.79%	MYB33(MYB)	A_WT_S2
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1.00E-12	-29.08	0	9936	8.93%	9058.7	8.33%	TAGL1(MADS)	A_WT_S2
"ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer"	VAGGTCACNSTGACC	1.00E-12	-28.39	0	3194	2.87%	2750.2	2.53%	"ERE(NR),IR3"	A_WT_S2
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1.00E-12	-27.71	0	1566	1.41%	1276.7	1.17%	REB1	A_WT_S2
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1.00E-11	-27.41	0	22720	20.43%	21308.4	19.59%	Ascl1(bHLH)	A_WT_S2
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1.00E-11	-27.4	0	3484	3.13%	3024.1	2.78%	AtIDD11(C2H2)	A_WT_S2
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1.00E-11	-26.78	0	2962	2.66%	2548.4	2.34%	Tbx20(T-box)	A_WT_S2
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1.00E-11	-26.75	0	2301	2.07%	1944.6	1.79%	bZIP16(bZIP)	A_WT_S2
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1.00E-11	-26.64	0	4553	4.09%	4021.6	3.70%	E-box	A_WT_S2
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1.00E-11	-26.4	0	21898	19.69%	20535.2	18.88%	Meis1(Homeobox)	A_WT_S2
"Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer"	GTRGGTCASTGGGTCA	1.00E-11	-25.34	0	1581	1.42%	1301.3	1.20%	"Reverb(NR),DR2"	A_WT_S2
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1.00E-10	-25.28	0	8979	8.07%	8198.4	7.54%	NAM(NAC)	A_WT_S2
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1.00E-10	-24.79	0	8043	7.23%	7318.8	6.73%	WT1(Zf)	A_WT_S2
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1.00E-10	-24.56	0	15876	14.27%	14784.8	13.59%	At5g18450(AP2EREBP)	A_WT_S2
"OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer"	ATTTGCATAACAATG	1.00E-10	-24.22	0	1404	1.26%	1148.3	1.06%	"OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)"	A_WT_S2
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1.00E-10	-24.03	0	35994	32.36%	34212.4	31.45%	HuR(?)	A_WT_S2
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1.00E-10	-23.93	0	3712	3.34%	3262.7	3.00%	At5g08750(C3H)	A_WT_S2
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1.00E-10	-23.28	0	16689	15.00%	15585.1	14.33%	CDF3(C2C2dof)	A_WT_S2
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1.00E-10	-23.19	0	21147	19.01%	19872.1	18.27%	AT5G02460(C2C2dof)	A_WT_S2
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1.00E-10	-23.05	0	6416	5.77%	5803	5.33%	ATHB23(ZFHD)	A_WT_S2
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1.00E-09	-22.81	0	2525	2.27%	2174.5	2.00%	At5g66730(C2H2)	A_WT_S2
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1.00E-09	-22.76	0	4956	4.46%	4433.4	4.08%	CHR(?)	A_WT_S2
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1.00E-09	-22.6	0	2397	2.16%	2058.1	1.89%	EBF(EBF)	A_WT_S2
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1.00E-09	-22.44	0	1644	1.48%	1373.5	1.26%	O2(bZIP)	A_WT_S2
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1.00E-09	-22.13	0	4094	3.68%	3633.4	3.34%	GATA11(C2C2gata)	A_WT_S2
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1.00E-09	-22.12	0	36623	32.93%	34867.5	32.05%	ARF2(ARF)	A_WT_S2
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1.00E-09	-22.1	0	11026	9.91%	10187.8	9.37%	KAN2(G2like)	A_WT_S2
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1.00E-09	-22.05	0	6090	5.48%	5506.8	5.06%	E2F6(E2F)	A_WT_S2
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1.00E-09	-21.56	0	2076	1.87%	1771.4	1.63%	Srebp1a(bHLH)	A_WT_S2
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1.00E-09	-21.31	0	2142	1.93%	1833.1	1.69%	LBD2(LOBAS2)	A_WT_S2
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1.00E-09	-21.24	0	10380	9.33%	9584.7	8.81%	bHLH80(bHLH)	A_WT_S2
"Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer"	ATTTGCATAW	1.00E-09	-21.21	0	3773	3.39%	3342.9	3.07%	"Oct4(POU,Homeobox)"	A_WT_S2
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1.00E-09	-21.11	0	9275	8.34%	8534.4	7.85%	FOXM1(Forkhead)	A_WT_S2
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1.00E-09	-21.06	0	21477	19.31%	20232.9	18.60%	ATAF1(NAC)	A_WT_S2
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1.00E-08	-20.61	0	4421	3.97%	3953.3	3.63%	bZIP3(bZIP)	A_WT_S2
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1.00E-08	-20.5	0	1021	0.92%	824.5	0.76%	SPL14(SBP)	A_WT_S2
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1.00E-08	-20.35	0	17503	15.74%	16420.4	15.10%	ANAC046(NAC)	A_WT_S2
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1.00E-08	-20.33	0	3535	3.18%	3128.5	2.88%	CAMTA1(CAMTA)	A_WT_S2
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1.00E-08	-20.29	0	10468	9.41%	9682.7	8.90%	ZNF341(Zf)	A_WT_S2
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1.00E-08	-20.12	0	13993	12.58%	13055.5	12.00%	AtGRF6(GRF)	A_WT_S2
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1.00E-08	-19.98	0	2189	1.97%	1885.2	1.73%	MYB118(MYB)	A_WT_S2
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1.00E-08	-19.87	0	5319	4.78%	4804.3	4.42%	GATA12(C2C2gata)	A_WT_S2
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1.00E-08	-19.81	0	5957	5.36%	5406.9	4.97%	HAT2(Homeobox)	A_WT_S2
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1.00E-08	-19.28	0	16404	14.75%	15384.8	14.14%	Unknown2	A_WT_S2
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1.00E-08	-19.07	0	543	0.49%	411.6	0.38%	NFkB-p65-Rel(RHD)	A_WT_S2
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1.00E-08	-18.99	0	10295	9.26%	9537.9	8.77%	RIN(MADS)	A_WT_S2
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1.00E-08	-18.83	0	8134	7.31%	7481.5	6.88%	n-Myc(bHLH)	A_WT_S2
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1.00E-08	-18.77	0	7730	6.95%	7098.5	6.53%	SMB(NAC)	A_WT_S2
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1.00E-08	-18.54	0	6345	5.70%	5788	5.32%	ATHB13(Homeobox)	A_WT_S2
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1.00E-07	-18.17	0	672	0.60%	526.7	0.48%	Unknown1	A_WT_S2
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1.00E-07	-18.06	0	2071	1.86%	1790.3	1.65%	NRF1(NRF)	A_WT_S2
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1.00E-07	-17.92	0	5443	4.89%	4943.3	4.54%	Foxh1(Forkhead)	A_WT_S2
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1.00E-07	-17.34	0	2944	2.65%	2604.8	2.39%	DREB2(AP2EREBP)	A_WT_S2
"Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer"	GTCATGCHTGRCTGS	1.00E-07	-17.24	0	4500	4.05%	4062.6	3.73%	"Pax8(Paired,Homeobox)"	A_WT_S2
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1.00E-07	-17.03	0	8786	7.90%	8128.8	7.47%	NFAT(RHD)	A_WT_S2
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1.00E-07	-16.98	0	3966	3.57%	3563.5	3.28%	LMI1(HB)	A_WT_S2
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1.00E-07	-16.97	0	2044	1.84%	1773.3	1.63%	Tcfcp2l1(CP2)	A_WT_S2
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1.00E-07	-16.58	0	5520	4.96%	5033	4.63%	ZNF7(Zf)	A_WT_S2
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1.00E-07	-16.54	0	425	0.38%	318.6	0.29%	MYB3R5(MYB)	A_WT_S2
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1.00E-07	-16.39	0	16665	14.98%	15694	14.43%	ZFX(Zf)	A_WT_S2
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1.00E-07	-16.25	0	3523	3.17%	3155.6	2.90%	Hoxc9(Homeobox)	A_WT_S2
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1.00E-06	-16.09	0	9307	8.37%	8640.9	7.94%	VND6(NAC)	A_WT_S2
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1.00E-06	-16.04	0	4736	4.26%	4298.9	3.95%	NTM1(NAC)	A_WT_S2
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1.00E-06	-15.77	0	1713	1.54%	1477.6	1.36%	Twist(bHLH)	A_WT_S2
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1.00E-06	-15.64	0	614	0.55%	485.7	0.45%	CDM1(C3H)	A_WT_S2
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1.00E-06	-15.57	0	1869	1.68%	1622.4	1.49%	MYNN(Zf)	A_WT_S2
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1.00E-06	-15.31	0	4603	4.14%	4181.6	3.84%	AT2G15740(C2H2)	A_WT_S2
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1.00E-06	-15.29	0	14052	12.63%	13202.6	12.14%	PIF4(bHLH)	A_WT_S2
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1.00E-06	-15.27	0	1173	1.05%	987.7	0.91%	GATA6(C2C2gata)	A_WT_S2
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1.00E-06	-15.14	0	6363	5.72%	5850.7	5.38%	MYB116(MYB)	A_WT_S2
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1.00E-06	-14.83	0	12833	11.54%	12040.1	11.07%	AT1G71450(AP2EREBP)	A_WT_S2
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1.00E-06	-14.7	0	6773	6.09%	6246.9	5.74%	RKD2(RWPRK)	A_WT_S2
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1.00E-06	-14.55	0	5676	5.10%	5206.4	4.79%	ATHB34(ZFHD)	A_WT_S2
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1.00E-06	-14.23	0	10034	9.02%	9367.9	8.61%	AT1G72740(MYBrelated)	A_WT_S2
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1.00E-06	-14.18	0	2024	1.82%	1776.6	1.63%	DMRT1(DM)	A_WT_S2
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1.00E-06	-14.16	0	6484	5.83%	5979.6	5.50%	CEJ1(AP2EREBP)	A_WT_S2
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1.00E-06	-14.16	0	730	0.66%	594.6	0.55%	AARE(HLH)	A_WT_S2
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1.00E-06	-14.09	0	201	0.18%	137.8	0.13%	EFL-1(E2F)	A_WT_S2
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1.00E-06	-13.93	0	20228	18.19%	19186.5	17.64%	ANAC038(NAC)	A_WT_S2
"bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer"	NAGTTTCABTHTGACTNW	1.00E-06	-13.91	0	4439	3.99%	4043.6	3.72%	"bZIP:IRF(bZIP,IRF)"	A_WT_S2
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1.00E-05	-13.72	0	2104	1.89%	1854.6	1.70%	HOXA1(Homeobox)	A_WT_S2
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1.00E-05	-13.66	0	3559	3.20%	3216.7	2.96%	ABI5(bZIP)	A_WT_S2
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1.00E-05	-13.58	0	4241	3.81%	3860.2	3.55%	At1g36060(AP2EREBP)	A_WT_S2
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1.00E-05	-13.52	0	612	0.55%	492.5	0.45%	SPL13(SBP)	A_WT_S2
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1.00E-05	-13.48	0	5573	5.01%	5123.3	4.71%	PRDM9(Zf)	A_WT_S2
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1.00E-05	-13.14	0	11489	10.33%	10783.5	9.91%	TCX2(CPP)	A_WT_S2
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1.00E-05	-13.12	0	16014	14.40%	15139	13.92%	Hoxd12(Homeobox)	A_WT_S2
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1.00E-05	-13.06	0	5234	4.71%	4807.7	4.42%	ATHB24(ZFHD)	A_WT_S2
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1.00E-05	-12.9	0	2399	2.16%	2136.9	1.96%	MafF(bZIP)	A_WT_S2
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1.00E-05	-12.88	0	4626	4.16%	4233.3	3.89%	At4g16750(AP2EREBP)	A_WT_S2
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1.00E-05	-12.8	0	11012	9.90%	10332.6	9.50%	SOL1(CPP)	A_WT_S2
"FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer"	AGGTCANTGACCTB	1.00E-05	-12.78	0	4239	3.81%	3868.7	3.56%	"FXR(NR),IR1"	A_WT_S2
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1.00E-05	-12.74	0	1097	0.99%	933.1	0.86%	E2F7(E2F)	A_WT_S2
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1.00E-05	-12.73	0	5648	5.08%	5205.1	4.79%	ATHB5(HB)	A_WT_S2
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1.00E-05	-12.66	0	1389	1.25%	1201.9	1.10%	Srebp2(bHLH)	A_WT_S2
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1.00E-05	-12.64	0	3447	3.10%	3122.8	2.87%	IDD7(C2H2)	A_WT_S2
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1.00E-05	-12.49	0	7721	6.94%	7185.2	6.61%	VND2(NAC)	A_WT_S2
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1.00E-05	-12.39	0	2156	1.94%	1914.4	1.76%	ATHB20(Homeobox)	A_WT_S2
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1.00E-05	-12.32	0	958	0.86%	809	0.74%	ZSCAN22(Zf)	A_WT_S2
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1.00E-05	-12.19	0	2006	1.80%	1776.8	1.63%	Pho4(bHLH)	A_WT_S2
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1.00E-05	-12.15	0	708	0.64%	584.1	0.54%	ZNF669(Zf)	A_WT_S2
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1.00E-05	-12.04	0	8645	7.77%	8077.3	7.43%	DPL-1(E2F)	A_WT_S2
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1.00E-05	-11.97	0	6806	6.12%	6320.8	5.81%	ANAC071(NAC)	A_WT_S2
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1.00E-05	-11.89	0	4381	3.94%	4014.2	3.69%	ZNF143|STAF(Zf)	A_WT_S2
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1.00E-05	-11.88	0	270	0.24%	200.1	0.18%	AGL13(MADS)	A_WT_S2
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1.00E-05	-11.85	0	20	0.02%	6.5	0.01%	DUX(Homeobox)	A_WT_S2
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1.00E-05	-11.77	0	3903	3.51%	3563.2	3.28%	At2g41835(C2H2)	A_WT_S2
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1.00E-04	-11.34	0	5047	4.54%	4654.4	4.28%	HOXA9(Homeobox)	A_WT_S2
"NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer"	GGGGGAATCCCC	1.00E-04	-11.22	0	1106	0.99%	951.7	0.87%	"NFkB-p50,p52(RHD)"	A_WT_S2
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1.00E-04	-11.13	0	391	0.35%	307.3	0.28%	ZNF768(Zf)	A_WT_S2
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1.00E-04	-10.95	0	16136	14.51%	15310	14.07%	SPL1(SBP)	A_WT_S2
"GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer"	CRGCTGBNGNSNNSAGATAA	1.00E-04	-10.81	0	1166	1.05%	1009.8	0.93%	"GATA:SCL(Zf,bHLH)"	A_WT_S2
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1.00E-04	-10.76	0	4834	4.35%	4460.6	4.10%	ANAC047(NAC)	A_WT_S2
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1.00E-04	-10.72	1.00E-04	21170	19.03%	20184.6	18.56%	SPL9(SBP)	A_WT_S2
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1.00E-04	-10.5	1.00E-04	3315	2.98%	3023.6	2.78%	Prop1(Homeobox)	A_WT_S2
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1.00E-04	-10.46	1.00E-04	294	0.26%	225.9	0.21%	ZNF382(Zf)	A_WT_S2
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1.00E-04	-10.44	1.00E-04	405	0.36%	322.7	0.30%	ZBTB33(Zf)	A_WT_S2
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1.00E-04	-10.4	1.00E-04	3174	2.85%	2891.3	2.66%	AT1G12630(AP2EREBP)	A_WT_S2
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1.00E-04	-10.32	1.00E-04	2645	2.38%	2394	2.20%	SPL5(SBP)	A_WT_S2
"Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer"	ATATGCAAAT	1.00E-04	-10.12	1.00E-04	2168	1.95%	1947.9	1.79%	"Oct2(POU,Homeobox)"	A_WT_S2
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1.00E-04	-9.982	1.00E-04	661	0.59%	553.4	0.51%	Unknown4	A_WT_S2
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1.00E-04	-9.662	1.00E-04	398	0.36%	319.2	0.29%	AGL25(MADS)	A_WT_S2
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1.00E-04	-9.646	1.00E-04	7036	6.33%	6581.9	6.05%	ANAC016(NAC)	A_WT_S2
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1.00E-04	-9.354	2.00E-04	19359	17.41%	18471.5	16.98%	dof24(C2C2dof)	A_WT_S2
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1.00E-04	-9.323	2.00E-04	2075	1.87%	1868.2	1.72%	Pit1+1bp(Homeobox)	A_WT_S2
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1.00E-04	-9.23	2.00E-04	8873	7.98%	8352.1	7.68%	KANADI1(Myb)	A_WT_S2
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	0.001	-8.968	3.00E-04	1549	1.39%	1379.9	1.27%	bHLH10(bHLH)	A_WT_S2
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	0.001	-8.92	3.00E-04	208	0.19%	156.2	0.14%	EBNA1(EBV-virus)	A_WT_S2
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	0.001	-8.825	3.00E-04	4582	4.12%	4250.5	3.91%	MYB105(MYB)	A_WT_S2
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	0.001	-8.703	4.00E-04	7416	6.67%	6965	6.40%	bHLH130(bHLH)	A_WT_S2
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	0.001	-8.674	4.00E-04	4592	4.13%	4262.1	3.92%	AT3G10030(Trihelix)	A_WT_S2
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	0.001	-8.605	4.00E-04	3062	2.75%	2808	2.58%	ZNF519(Zf)	A_WT_S2
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	0.001	-8.58	4.00E-04	6430	5.78%	6021.2	5.54%	PBX2(Homeobox)	A_WT_S2
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	0.001	-8.488	5.00E-04	12635	11.36%	11994.4	11.03%	ERF13(AP2EREBP)	A_WT_S2
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	0.001	-8.383	5.00E-04	3658	3.29%	3377.1	3.10%	ANAC013(NAC)	A_WT_S2
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	0.001	-8.315	5.00E-04	1111	1.00%	977.8	0.90%	CEBP:CEBP(bZIP)	A_WT_S2
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	0.001	-8.25	6.00E-04	174	0.16%	129.9	0.12%	bZIP44(bZIP)	A_WT_S2
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	0.001	-8.198	6.00E-04	6106	5.49%	5718.5	5.26%	ANAC057(NAC)	A_WT_S2
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	0.001	-8.128	6.00E-04	7344	6.60%	6907.7	6.35%	DEAR2(AP2EREBP)	A_WT_S2
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	0.001	-8.073	7.00E-04	408	0.37%	335.9	0.31%	Six4(Homeobox)	A_WT_S2
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	0.001	-7.963	8.00E-04	3217	2.89%	2964.2	2.72%	GATA1(C2C2gata)	A_WT_S2
"PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer"	GTCACGCTCSCTGM	0.001	-7.933	8.00E-04	1257	1.13%	1116.3	1.03%	"PAX5(Paired,Homeobox),condensed"	A_WT_S2
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	0.001	-7.926	8.00E-04	209	0.19%	160.6	0.15%	p53(p53)	A_WT_S2
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	0.001	-7.857	8.00E-04	11715	10.53%	11123.9	10.23%	GRF9(GRF)	A_WT_S2
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	0.001	-7.65	0.001	3621	3.26%	3353.3	3.08%	SVP(MADS)	A_WT_S2
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	0.001	-7.496	0.0012	532	0.48%	450.3	0.41%	p73(p53)	A_WT_S2
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	0.001	-7.441	0.0013	3606	3.24%	3342.5	3.07%	STAT5(Stat)	A_WT_S2
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	0.001	-7.352	0.0014	10136	9.11%	9613.6	8.84%	Replumless(BLH)	A_WT_S2
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	0.001	-7.291	0.0015	8067	7.25%	7621.9	7.01%	ATHB25(ZFHD)	A_WT_S2
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	0.001	-7.169	0.0016	1430	1.29%	1285.6	1.18%	AT3G58630(Trihelix)	A_WT_S2
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	0.001	-7.138	0.0017	4219	3.79%	3932.5	3.62%	CELF2(RRM)	A_WT_S2
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	0.001	-7.136	0.0017	7793	7.01%	7361.9	6.77%	Max(bHLH)	A_WT_S2
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	0.001	-7.067	0.0018	2404	2.16%	2205.6	2.03%	NRF(NRF)	A_WT_S2
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	0.001	-6.945	0.002	5649	5.08%	5305.2	4.88%	MafB(bZIP)	A_WT_S2
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	0.001	-6.939	0.0021	18630	16.75%	17844.3	16.40%	At2g33710(AP2EREBP)	A_WT_S2
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	0.001	-6.917	0.0021	39	0.04%	22.6	0.02%	bZIP42(bZIP)	A_WT_S2
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	0.01	-6.812	0.0023	850	0.76%	747.4	0.69%	HOXA2(Homeobox)	A_WT_S2
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	0.01	-6.809	0.0023	1376	1.24%	1238.9	1.14%	TINY(AP2EREBP)	A_WT_S2
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	0.01	-6.806	0.0023	15593	14.02%	14905.1	13.70%	ERF105(AP2EREBP)	A_WT_S2
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	0.01	-6.72	0.0025	1609	1.45%	1458.8	1.34%	TOD6?	A_WT_S2
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	0.01	-6.698	0.0026	1511	1.36%	1366.2	1.26%	AT3G60490(AP2EREBP)	A_WT_S2
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	0.01	-6.676	0.0026	3038	2.73%	2813.2	2.59%	CES-1(Homeobox)	A_WT_S2
"RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer"	GGGRAARRGRMCAGMTG	0.01	-6.66	0.0027	4118	3.70%	3844.6	3.53%	"RBPJ:Ebox(?,bHLH)"	A_WT_S2
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	0.01	-6.585	0.0029	1532	1.38%	1388	1.28%	bHLH157(bHLH)	A_WT_S2
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	0.01	-6.584	0.0029	13900	12.50%	13273.8	12.20%	EAR2(NR)	A_WT_S2
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	0.01	-6.5	0.0031	18294	16.45%	17534.2	16.12%	ASL18(LOBAS2)	A_WT_S2
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	0.01	-6.455	0.0032	15527	13.96%	14853.1	13.65%	AT5G25475(ABI3VP1)	A_WT_S2
"GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer"	NNNNNBAGATAWYATCTVHN	0.01	-6.388	0.0035	1032	0.93%	920.5	0.85%	"GATA(Zf),IR3"	A_WT_S2
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	0.01	-6.317	0.0037	1429	1.28%	1293.9	1.19%	Nur77(NR)	A_WT_S2
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	0.01	-6.292	0.0038	4490	4.04%	4207.1	3.87%	ANAC005(NAC)	A_WT_S2
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	0.01	-6.184	0.0042	4832	4.34%	4537.2	4.17%	NTM2(NAC)	A_WT_S2
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	0.01	-6.108	0.0046	6322	5.68%	5970.1	5.49%	Hnf6b(Homeobox)	A_WT_S2
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	0.01	-6.049	0.0048	12233	11.00%	11677.6	10.74%	TATA-Box(TBP)	A_WT_S2
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	0.01	-6.033	0.0049	24224	21.78%	23312.7	21.43%	Znf263(Zf)	A_WT_S2
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	0.01	-6.018	0.0049	10681	9.60%	10177	9.36%	AT2G20110(CPP)	A_WT_S2
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	0.01	-6.015	0.005	8155	7.33%	7738.6	7.11%	LBD13(LOBAS2)	A_WT_S2
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	0.01	-6.012	0.005	1870	1.68%	1713.9	1.58%	At5g65130(AP2EREBP)	A_WT_S2
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	0.01	-5.839	0.0059	21768	19.57%	20933.9	19.24%	Hoxa13(Homeobox)	A_WT_S2
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	0.01	-5.76	0.0064	8987	8.08%	8548.2	7.86%	ANAC070(NAC)	A_WT_S2
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	0.01	-5.648	0.0071	8732	7.85%	8305.7	7.64%	bHLH122(bHLH)	A_WT_S2
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	0.01	-5.489	0.0083	58	0.05%	39.6	0.04%	ZML1(C2C2gata)	A_WT_S2
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	0.01	-5.244	0.0106	5678	5.10%	5371.5	4.94%	NAC2(NAC)	A_WT_S2
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	0.01	-5.219	0.0108	5937	5.34%	5621.8	5.17%	ANAC028(NAC)	A_WT_S2
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	0.01	-5.185	0.0112	5396	4.85%	5101.4	4.69%	ANAC096(NAC)	A_WT_S2
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	0.01	-5.162	0.0114	34592	31.10%	33449.3	30.75%	Zac1(Zf)	A_WT_S2
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	0.01	-5.148	0.0116	5904	5.31%	5591.1	5.14%	SPL11(SBP)	A_WT_S2
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	0.01	-5.101	0.0121	487	0.44%	424.6	0.39%	GATA19(C2C2gata)	A_WT_S2
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	0.01	-5.085	0.0123	287	0.26%	241.6	0.22%	SPL3(SBP)	A_WT_S2
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	0.01	-4.99	0.0135	2819	2.53%	2632.2	2.42%	At4g36780(BZR)	A_WT_S2
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	0.01	-4.948	0.014	3256	2.93%	3051.1	2.80%	Tcf7(HMG)	A_WT_S2
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	0.01	-4.922	0.0143	11417	10.26%	10925.5	10.04%	RAP26(AP2EREBP)	A_WT_S2
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	0.01	-4.908	0.0145	925	0.83%	834.8	0.77%	Phox2b(Homeobox)	A_WT_S2
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	0.01	-4.858	0.0152	2943	2.65%	2753.8	2.53%	STAT1(Stat)	A_WT_S2
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	0.01	-4.751	0.0169	2241	2.01%	2084.2	1.92%	At4g31060(AP2EREBP)	A_WT_S2
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	0.01	-4.647	0.0187	1111	1.00%	1012.3	0.93%	At2g44940(AP2EREBP)	A_WT_S2
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	0.1	-4.601	0.0196	3227	2.90%	3030.8	2.79%	ANL2(HB)	A_WT_S2
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	0.1	-4.577	0.02	6297	5.66%	5985.3	5.50%	VND1(NAC)	A_WT_S2
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	0.1	-4.433	0.0231	9367	8.42%	8957.7	8.23%	ABR1(AP2EREBP)	A_WT_S2
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	0.1	-4.432	0.0231	3536	3.18%	3330.9	3.06%	Rap210(AP2EREBP)	A_WT_S2
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	0.1	-4.413	0.0234	5049	4.54%	4786.6	4.40%	Unknown6	A_WT_S2
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	0.1	-4.39	0.0239	881	0.79%	798.4	0.73%	HAT1(Homeobox)	A_WT_S2
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	0.1	-4.051	0.0336	2195	1.97%	2052.4	1.89%	DDF1(AP2EREBP)	A_WT_S2
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	0.1	-4.009	0.0349	2143	1.93%	2003.6	1.84%	HRE(HSF)	A_WT_S2
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	0.1	-4.001	0.0351	7097	6.38%	6775.1	6.23%	E2F3(E2F)	A_WT_S2
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	0.1	-3.993	0.0353	6653	5.98%	6346.5	5.83%	NST1(NAC)	A_WT_S2
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	0.1	-3.96	0.0364	985	0.89%	901.4	0.83%	ZNF317(Zf)	A_WT_S2
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	0.1	-3.892	0.0389	4	0.00%	0	0.00%	REM16(ABI3VP1)	A_WT_S2
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	0.1	-3.867	0.0398	494	0.44%	440	0.40%	E2F(E2F)	A_WT_S2
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	0.1	-3.845	0.0407	23166	20.83%	22388.3	20.58%	Nkx2.2(Homeobox)	A_WT_S2
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	0.1	-3.834	0.0411	9673	8.70%	9275.3	8.53%	NFY(CCAAT)	A_WT_S2
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	0.1	-3.81	0.042	44	0.04%	31.8	0.03%	AT4G27900(C2C2COlike)	A_WT_S2
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	0.1	-3.699	0.0468	4571	4.11%	4344.6	3.99%	ATHB6(Homeobox)	A_WT_S2
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	0.1	-3.69	0.0471	1438	1.29%	1335	1.23%	ZNF165(Zf)	A_WT_S2
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	0.1	-3.689	0.0471	5888	5.29%	5616.6	5.16%	SND3(NAC)	A_WT_S2
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	0.1	-3.677	0.0476	684	0.61%	620.8	0.57%	HAT5(Homeobox)	A_WT_S2
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	0.1	-3.676	0.0476	2288	2.06%	2148.9	1.98%	EKLF(Zf)	A_WT_S2
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	0.1	-3.671	0.0477	1054	0.95%	970.6	0.89%	IDD2(C2H2)	A_WT_S2
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	0.1	-3.64	0.0491	4731	4.25%	4500.6	4.14%	ATHB40(HB)	A_WT_S2
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	0	-22500	0	14690	14.26%	1332.8	1.33%	CTCF(Zf)	A_WT_S3
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	0	-16970	0	15391	14.94%	2261.7	2.25%	BORIS(Zf)	A_WT_S3
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	0	-3636	0	7029	6.82%	2072.4	2.06%	SpiB(ETS)	A_WT_S3
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	0	-3486	0	12157	11.80%	5174.2	5.15%	PU.1(ETS)	A_WT_S3
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	0	-2535	0	14706	14.27%	7766.1	7.72%	ELF5(ETS)	A_WT_S3
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	0	-2519	0	19115	18.55%	11109.1	11.05%	ETS1(ETS)	A_WT_S3
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	0	-2417	0	19676	19.10%	11679.5	11.61%	Elf4(ETS)	A_WT_S3
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	0	-2095	0	16602	16.12%	9713.7	9.66%	Etv2(ETS)	A_WT_S3
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	0	-2093	0	16820	16.33%	9885.2	9.83%	GABPA(ETS)	A_WT_S3
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	0	-2058	0	8472	8.22%	3851.8	3.83%	NF1(CTF)	A_WT_S3
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	0	-1967	0	13611	13.21%	7596.6	7.55%	ELF3(ETS)	A_WT_S3
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	0	-1966	0	19578	19.00%	12246.5	12.18%	Fli1(ETS)	A_WT_S3
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	0	-1926	0	25366	24.62%	17086.7	16.99%	ERG(ETS)	A_WT_S3
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	0	-1692	0	6059	5.88%	2567.2	2.55%	IRF8(IRF)	A_WT_S3
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	0	-1683	0	20916	20.30%	13801.9	13.72%	EHF(ETS)	A_WT_S3
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	0	-1675	0	4294	4.17%	1512.5	1.50%	PU.1:IRF8(ETS:IRF)	A_WT_S3
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	0	-1535	0	6480	6.29%	2962.8	2.95%	Ets1-distal(ETS)	A_WT_S3
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	0	-1479	0	27788	26.97%	20058	19.95%	NF1-halfsite(CTF)	A_WT_S3
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	0	-1461	0	10076	9.78%	5573.5	5.54%	ELF1(ETS)	A_WT_S3
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	0	-1410	0	23245	22.56%	16284	16.19%	ETV1(ETS)	A_WT_S3
ETS(ETS)/Promoter/Homer	AACCGGAAGT	0	-1246	0	6944	6.74%	3548.1	3.53%	ETS(ETS)	A_WT_S3
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	0	-1220	0	21485	20.85%	15182.7	15.10%	Sox10(HMG)	A_WT_S3
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	0	-1212	0	22291	21.64%	15890.6	15.80%	Sox3(HMG)	A_WT_S3
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	0	-1139	0	18974	18.42%	13221.3	13.15%	ETV4(ETS)	A_WT_S3
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	0	-1128	0	18691	18.14%	13006.8	12.93%	PU.1-IRF(ETS:IRF)	A_WT_S3
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	0	-1083	0	11027	10.70%	6819.9	6.78%	EWS:ERG-fusion(ETS)	A_WT_S3
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	0	-1028	0	12151	11.79%	7803.8	7.76%	Sox2(HMG)	A_WT_S3
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	0	-951.4	0	13581	13.18%	9105.9	9.06%	Sox15(HMG)	A_WT_S3
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	0	-920.2	0	8244	8.00%	4905.1	4.88%	Tlx?(NR)	A_WT_S3
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	0	-913.5	0	22466	21.81%	16764.1	16.67%	Sox21(HMG)	A_WT_S3
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	0	-910.5	0	11847	11.50%	7767.8	7.72%	Sox4(HMG)	A_WT_S3
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	0	-891.6	0	31565	30.64%	24974.3	24.84%	HIC1(Zf)	A_WT_S3
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	0	-859.6	0	899	0.87%	148.1	0.15%	CTCF-SatelliteElement(Zf?)	A_WT_S3
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	0	-833.7	0	12525	12.16%	8469.5	8.42%	Sox9(HMG)	A_WT_S3
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	0	-818.1	0	19110	18.55%	14086.4	14.01%	Sox6(HMG)	A_WT_S3
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	0	-797	0	4713	4.57%	2448.5	2.43%	IRF3(IRF)	A_WT_S3
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	0	-780.8	0	9205	8.94%	5877.8	5.85%	Elk4(ETS)	A_WT_S3
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	0	-773.3	0	16137	15.66%	11638.2	11.57%	Sp5(Zf)	A_WT_S3
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	9.99988867182683e-321	-738.2	0	5948	5.77%	3420.4	3.40%	NFIL3(bZIP)	A_WT_S3
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	9.99999999998465e-313	-720.5	0	9233	8.96%	6007.7	5.97%	EWS:FLI1-fusion(ETS)	A_WT_S3
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	9.99999999999997e-311	-715	0	9275	9.00%	6051.4	6.02%	Sox17(HMG)	A_WT_S3
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	0.00E+00	-713.3	0	5641	5.48%	3224.4	3.21%	Sp1(Zf)	A_WT_S3
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1.00E-297	-684.3	0	1898	1.84%	696.7	0.69%	RFX(HTH)	A_WT_S3
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1.00E-287	-662.7	0	2012	1.95%	776.9	0.77%	Rfx2(HTH)	A_WT_S3
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1.00E-278	-640.4	0	10487	10.18%	7188.1	7.15%	Bcl11a(Zf)	A_WT_S3
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1.00E-273	-629.3	0	4305	4.18%	2347.2	2.33%	CREB5(bZIP)	A_WT_S3
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1.00E-271	-624.1	0	9506	9.23%	6415.6	6.38%	Elk1(ETS)	A_WT_S3
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1.00E-245	-565.7	0	5549	5.39%	3366.4	3.35%	Atf7(bZIP)	A_WT_S3
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1.00E-233	-536.9	0	2316	2.25%	1059.2	1.05%	IRF1(IRF)	A_WT_S3
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1.00E-231	-532.3	0	14558	14.13%	10914.4	10.85%	SPDEF(ETS)	A_WT_S3
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1.00E-223	-515.6	0	4111	3.99%	2349.7	2.34%	Atf2(bZIP)	A_WT_S3
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1.00E-216	-499.5	0	3777	3.67%	2123.3	2.11%	c-Jun-CRE(bZIP)	A_WT_S3
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1.00E-216	-499.3	0	7252	7.04%	4831.3	4.80%	Atf1(bZIP)	A_WT_S3
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1.00E-210	-485.8	0	7998	7.76%	5468.7	5.44%	THRb(NR)	A_WT_S3
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1.00E-209	-482.1	0	21469	20.84%	17210.3	17.11%	Sp2(Zf)	A_WT_S3
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1.00E-209	-481.9	0	1943	1.89%	862.3	0.86%	Mef2d(MADS)	A_WT_S3
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1.00E-208	-479.5	0	3740	3.63%	2122.5	2.11%	Mef2c(MADS)	A_WT_S3
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1.00E-207	-477.5	0	11889	11.54%	8764.2	8.72%	NeuroD1(bHLH)	A_WT_S3
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1.00E-204	-471.8	0	2015	1.96%	917.9	0.91%	X-box(HTH)	A_WT_S3
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1.00E-196	-452.1	0	62598	60.76%	56471.3	56.16%	AZF1(C2H2)	A_WT_S3
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1.00E-194	-446.7	0	7908	7.68%	5480.4	5.45%	KLF3(Zf)	A_WT_S3
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1.00E-179	-414.1	0	13463	13.07%	10317.4	10.26%	KLF1(Zf)	A_WT_S3
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1.00E-178	-411.3	0	6103	5.92%	4077.4	4.05%	JunB(bZIP)	A_WT_S3
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1.00E-176	-407	0	6054	5.88%	4046.9	4.02%	Fra1(bZIP)	A_WT_S3
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1.00E-176	-405.9	0	14823	14.39%	11541.8	11.48%	Tcf12(bHLH)	A_WT_S3
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1.00E-173	-400.1	0	37823	36.71%	32747	32.56%	Tgif2(Homeobox)	A_WT_S3
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1.00E-173	-400	0	4228	4.10%	2609.7	2.60%	Sox7(HMG)	A_WT_S3
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1.00E-171	-396	0	6371	6.18%	4327.3	4.30%	Fos(bZIP)	A_WT_S3
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1.00E-169	-390.2	0	3769	3.66%	2271.6	2.26%	Mef2a(MADS)	A_WT_S3
"GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer"	VAGRACAKWCTGTYC	1.00E-168	-388.5	0	3394	3.29%	1989.2	1.98%	"GRE(NR),IR3"	A_WT_S3
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1.00E-166	-382.3	0	57542	55.85%	51868.2	51.58%	At3g60580(C2H2)	A_WT_S3
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1.00E-165	-380.9	0	5437	5.28%	3600.1	3.58%	Fra2(bZIP)	A_WT_S3
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1.00E-163	-375.6	0	7199	6.99%	5057	5.03%	Atf3(bZIP)	A_WT_S3
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1.00E-163	-375.4	0	1830	1.78%	880.7	0.88%	IRF2(IRF)	A_WT_S3
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1.00E-161	-371.3	0	9139	8.87%	6703.5	6.67%	Zic3(Zf)	A_WT_S3
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1.00E-160	-369.1	0	8781	8.52%	6404.5	6.37%	Unknown-ESC-element(?)	A_WT_S3
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1.00E-156	-359.9	0	3361	3.26%	2006.4	2.00%	Rfx1(HTH)	A_WT_S3
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1.00E-154	-355.7	0	8108	7.87%	5869.8	5.84%	AP-1(bZIP)	A_WT_S3
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1.00E-154	-355	0	1391	1.35%	609	0.61%	RORg(NR)	A_WT_S3
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1.00E-153	-353.3	0	7218	7.01%	5126.7	5.10%	HLF(bZIP)	A_WT_S3
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1.00E-151	-349.4	0	4159	4.04%	2641.6	2.63%	TGA1(bZIP)	A_WT_S3
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1.00E-151	-349.3	0	4099	3.98%	2594.9	2.58%	Fosl2(bZIP)	A_WT_S3
"GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer"	NRGVACABNVTGTYCY	1.00E-147	-339.3	0	2120	2.06%	1118.5	1.11%	"GRE(NR),IR3"	A_WT_S3
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1.00E-146	-338.4	0	1361	1.32%	603.6	0.60%	JunD(bZIP)	A_WT_S3
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1.00E-146	-337.2	0	7096	6.89%	5064.5	5.04%	BATF(bZIP)	A_WT_S3
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1.00E-145	-335.7	0	10820	10.50%	8259.5	8.21%	MITF(bHLH)	A_WT_S3
"ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer"	RCAGGATGTGGT	1.00E-145	-335.2	0	1723	1.67%	846.7	0.84%	"ETS:RUNX(ETS,Runt)"	A_WT_S3
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1.00E-144	-332.8	0	5390	5.23%	3661.5	3.64%	TGA6(bZIP)	A_WT_S3
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1.00E-144	-331.7	0	8831	8.57%	6552	6.52%	bZIP50(bZIP)	A_WT_S3
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1.00E-141	-326.2	0	1274	1.24%	557.5	0.55%	TGA5(bZIP)	A_WT_S3
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1.00E-137	-316.2	0	17607	17.09%	14376.2	14.30%	Ap4(bHLH)	A_WT_S3
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1.00E-136	-314.9	0	14797	14.36%	11850.2	11.78%	Rfx6(HTH)	A_WT_S3
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1.00E-133	-307.3	0	3854	3.74%	2476.1	2.46%	Usf2(bHLH)	A_WT_S3
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1.00E-133	-307.3	0	1911	1.85%	1006.8	1.00%	RORa(NR)	A_WT_S3
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1.00E-133	-306.6	0	2980	2.89%	1797.9	1.79%	PGR(NR)	A_WT_S3
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1.00E-132	-306	0	7134	6.92%	5177.1	5.15%	Mef2b(MADS)	A_WT_S3
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1.00E-132	-305.1	0	3054	2.96%	1856.2	1.85%	Jun-AP1(bZIP)	A_WT_S3
SeqBias: GA-repeat	GAGAGAGAGA	1.00E-130	-301.6	0	72048	69.94%	66750.7	66.38%	SeqBias: GA-repeat	A_WT_S3
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1.00E-126	-290.2	0	2906	2.82%	1766.5	1.76%	TGA4(bZIP)	A_WT_S3
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1.00E-125	-288.9	0	58588	56.87%	53464.5	53.17%	SCL(bHLH)	A_WT_S3
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1.00E-121	-279.1	0	15371	14.92%	12513.3	12.44%	Atoh1(bHLH)	A_WT_S3
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1.00E-118	-271.8	0	24306	23.59%	20742.9	20.63%	KLF14(Zf)	A_WT_S3
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1.00E-117	-271.2	0	1838	1.78%	996.1	0.99%	RORgt(NR)	A_WT_S3
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1.00E-117	-271.2	0	1838	1.78%	996.1	0.99%	RORgt(NR)	A_WT_S3
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1.00E-117	-270	0	384	0.37%	87.7	0.09%	REST-NRSF(Zf)	A_WT_S3
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1.00E-114	-264.3	0	4833	4.69%	3357.4	3.34%	Rfx5(HTH)	A_WT_S3
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1.00E-113	-261	0	483	0.47%	136.1	0.14%	Ronin(THAP)	A_WT_S3
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1.00E-112	-258.7	0	37628	36.52%	33373.3	33.19%	Smad3(MAD)	A_WT_S3
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1.00E-109	-253.2	0	16314	15.84%	13483.4	13.41%	BMYB(HTH)	A_WT_S3
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1.00E-108	-249.6	0	17882	17.36%	14931.7	14.85%	bZIP52(bZIP)	A_WT_S3
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1.00E-106	-245.4	0	2621	2.54%	1619.2	1.61%	Bach2(bZIP)	A_WT_S3
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1.00E-104	-241.1	0	4823	4.68%	3404.1	3.39%	E2FA(E2FDP)	A_WT_S3
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1.00E-104	-240.5	0	13679	13.28%	11154.5	11.09%	Tcf21(bHLH)	A_WT_S3
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1.00E-103	-239.1	0	8413	8.17%	6480	6.44%	RUNX-AML(Runt)	A_WT_S3
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1.00E-103	-237.2	0	5187	5.03%	3718.7	3.70%	TGA10(bZIP)	A_WT_S3
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1.00E-102	-237.1	0	10697	10.38%	8498.1	8.45%	TGA9(bZIP)	A_WT_S3
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1.00E-101	-234.5	0	18591	18.05%	15658	15.57%	BHLHA15(bHLH)	A_WT_S3
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1.00E-101	-234.3	0	22064	21.42%	18866.1	18.76%	Foxo1(Forkhead)	A_WT_S3
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1.00E-101	-233.8	0	8558	8.31%	6624.1	6.59%	RUNX(Runt)	A_WT_S3
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1.00E-100	-230.7	0	3999	3.88%	2748.8	2.73%	ARE(NR)	A_WT_S3
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1.00E-99	-228.3	0	19785	19.20%	16790.8	16.70%	NeuroG2(bHLH)	A_WT_S3
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1.00E-98	-226.9	0	866	0.84%	375.7	0.37%	TGA3(bZIP)	A_WT_S3
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1.00E-97	-223.6	0	978	0.95%	450	0.45%	ISRE(IRF)	A_WT_S3
SeqBias: polyA-repeat	AAAAAAAAAA	1.00E-90	-208.7	0	100301	97.36%	96759.6	96.22%	SeqBias: polyA-repeat	A_WT_S3
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1.00E-89	-205.5	0	63012	61.16%	58414.3	58.09%	At5g04390(C2H2)	A_WT_S3
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1.00E-89	-205.2	0	9527	9.25%	7585.1	7.54%	RUNX2(Runt)	A_WT_S3
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1.00E-88	-203.6	0	23796	23.10%	20660.7	20.55%	Olig2(bHLH)	A_WT_S3
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1.00E-87	-201.7	0	16716	16.23%	14107.4	14.03%	TF3A(C2H2)	A_WT_S3
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1.00E-86	-199.1	0	17363	16.85%	14716.7	14.63%	AMYB(HTH)	A_WT_S3
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1.00E-80	-185	0	5233	5.08%	3903.4	3.88%	USF1(bHLH)	A_WT_S3
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1.00E-80	-184.4	0	4816	4.67%	3549	3.53%	TGA2(bZIP)	A_WT_S3
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1.00E-79	-182.6	0	19714	19.14%	16986.6	16.89%	TCF4(bHLH)	A_WT_S3
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1.00E-79	-182.4	0	64952	63.05%	60514.4	60.18%	STZ(C2H2)	A_WT_S3
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1.00E-76	-176.9	0	6731	6.53%	5227.8	5.20%	Zic2(Zf)	A_WT_S3
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1.00E-76	-176.6	0	69204	67.17%	64779.4	64.42%	SUT1?	A_WT_S3
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1.00E-75	-173.8	0	18936	18.38%	16317.9	16.23%	COUP-TFII(NR)	A_WT_S3
SeqBias: CG bias	SSSSSSSSSS	1.00E-74	-172.7	0	88213	85.63%	84008.4	83.54%	SeqBias: CG bias	A_WT_S3
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1.00E-74	-172.4	0	18136	17.60%	15584.2	15.50%	Maz(Zf)	A_WT_S3
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1.00E-73	-170	0	11837	11.49%	9816.8	9.76%	MyoD(bHLH)	A_WT_S3
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1.00E-73	-169	0	16473	15.99%	14066.4	13.99%	En1(Homeobox)	A_WT_S3
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1.00E-70	-162.6	0	18580	18.04%	16056.4	15.97%	GLIS3(Zf)	A_WT_S3
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1.00E-70	-162.5	0	4801	4.66%	3602.8	3.58%	IRF4(IRF)	A_WT_S3
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1.00E-69	-160.7	0	26873	26.08%	23844.5	23.71%	PR(NR)	A_WT_S3
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1.00E-69	-159.2	0	23334	22.65%	20521.5	20.41%	MYB88(MYB)	A_WT_S3
GFY(?)/Promoter/Homer	ACTACAATTCCC	1.00E-68	-158.3	0	899	0.87%	459.8	0.46%	GFY(?)	A_WT_S3
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1.00E-67	-155.2	0	19355	18.79%	16825	16.73%	MYB(HTH)	A_WT_S3
SeqBias: C/A-bias	MMMMMMMMMM	1.00E-66	-154.2	0	102972	99.95%	100280.6	99.72%	SeqBias: C	A_WT_S3
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1.00E-66	-152.3	0	2452	2.38%	1660.7	1.65%	Atf4(bZIP)	A_WT_S3
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1.00E-65	-150.2	0	5962	5.79%	4651.9	4.63%	CEBP(bZIP)	A_WT_S3
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1.00E-64	-148.4	0	6164	5.98%	4835.3	4.81%	Klf9(Zf)	A_WT_S3
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1.00E-64	-147.7	0	1141	1.11%	645.7	0.64%	TFE3(bHLH)	A_WT_S3
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1.00E-63	-147	0	2720	2.64%	1891	1.88%	CRE(bZIP)	A_WT_S3
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1.00E-60	-140.1	0	45782	44.44%	42128.8	41.89%	GAGA-repeat	A_WT_S3
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1.00E-60	-138.3	0	1326	1.29%	797.9	0.79%	Unknown3	A_WT_S3
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1.00E-59	-136.6	0	13308	12.92%	11341.4	11.28%	MYB77(MYB)	A_WT_S3
"Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer"	CCATTGTATGCAAAT	1.00E-58	-135.2	0	1218	1.18%	720.9	0.72%	"Oct4:Sox17(POU,Homeobox,HMG)"	A_WT_S3
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1.00E-56	-131	0	20724	20.12%	18275.8	18.17%	NLP7(RWPRK)	A_WT_S3
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1.00E-56	-129.2	0	8336	8.09%	6851	6.81%	Stat3+il21(Stat)	A_WT_S3
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1.00E-56	-129.2	0	12528	12.16%	10668.3	10.61%	LHX9(Homeobox)	A_WT_S3
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1.00E-55	-128.8	0	852	0.83%	459.9	0.46%	Bach1(bZIP)	A_WT_S3
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1.00E-55	-128.2	0	6843	6.64%	5518.8	5.49%	CEBP:AP1(bZIP)	A_WT_S3
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1.00E-54	-125.6	0	1836	1.78%	1219.2	1.21%	Chop(bZIP)	A_WT_S3
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1.00E-52	-122	0	13068	12.68%	11209.3	11.15%	MYB81(MYB)	A_WT_S3
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1.00E-52	-121	0	2934	2.85%	2136.3	2.12%	Cbf1(bHLH)	A_WT_S3
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1.00E-52	-120.5	0	3125	3.03%	2299.8	2.29%	AT2G31460(REMB3)	A_WT_S3
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1.00E-52	-120.4	0	17341	16.83%	15186.4	15.10%	KLF5(Zf)	A_WT_S3
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1.00E-52	-120.3	0	5662	5.50%	4503.1	4.48%	FOXK2(Forkhead)	A_WT_S3
SeqBias: GCW-triplet	GCWGCWGCWGCW	1.00E-51	-119.6	0	103010	99.99%	100406.5	99.85%	SeqBias: GCW-triplet	A_WT_S3
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1.00E-51	-118.7	0	761	0.74%	406.5	0.40%	Nrf2(bZIP)	A_WT_S3
"Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer"	NNNVCTGWGYAAACASN	1.00E-51	-118.1	0	10444	10.14%	8823.2	8.77%	"Fox:Ebox(Forkhead,bHLH)"	A_WT_S3
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1.00E-50	-117.3	0	1074	1.04%	639	0.64%	E-box(bHLH)	A_WT_S3
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1.00E-49	-114.9	0	25309	24.57%	22730.5	22.60%	Initiator	A_WT_S3
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1.00E-49	-114.7	0	17044	16.54%	14950	14.87%	MYB73(MYB)	A_WT_S3
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1.00E-48	-112.4	0	7460	7.24%	6144.2	6.11%	REF6(Zf)	A_WT_S3
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1.00E-48	-111.6	0	1197	1.16%	741.4	0.74%	IRF:BATF(IRF:bZIP)	A_WT_S3
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1.00E-47	-110.5	0	914	0.89%	528.3	0.53%	NF-E2(bZIP)	A_WT_S3
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1.00E-46	-106.6	0	1371	1.33%	886.5	0.88%	BIM3(bHLH)	A_WT_S3
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1.00E-45	-105.5	0	10873	10.55%	9291.1	9.24%	Zic(Zf)	A_WT_S3
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1.00E-44	-103.3	0	8905	8.64%	7502.3	7.46%	Lhx2(Homeobox)	A_WT_S3
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1.00E-44	-102.6	0	4916	4.77%	3916.8	3.89%	E2F4(E2F)	A_WT_S3
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1.00E-44	-102.4	0	17666	17.15%	15626.8	15.54%	ZNF416(Zf)	A_WT_S3
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1.00E-44	-102.3	0	6227	6.04%	5085.4	5.06%	Foxo3(Forkhead)	A_WT_S3
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1.00E-43	-99.88	0	41996	40.76%	38868.7	38.65%	Nanog(Homeobox)	A_WT_S3
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1.00E-42	-98.12	0	2969	2.88%	2234.1	2.22%	SOC1(MADS)	A_WT_S3
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1.00E-41	-96.27	0	26909	26.12%	24421.1	24.28%	ERF15(AP2EREBP)	A_WT_S3
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1.00E-41	-95.01	0	5044	4.90%	4062.4	4.04%	Hoxa10(Homeobox)	A_WT_S3
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1.00E-41	-94.52	0	10479	10.17%	8998.8	8.95%	FEA4(bZIP)	A_WT_S3
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1.00E-41	-94.52	0	4716	4.58%	3773.6	3.75%	THRa(NR)	A_WT_S3
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1.00E-40	-93.99	0	33194	32.22%	30453.8	30.28%	Tgif1(Homeobox)	A_WT_S3
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1.00E-40	-93.97	0	15002	14.56%	13199.7	13.13%	At1g75490(AP2EREBP)	A_WT_S3
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1.00E-40	-93.41	0	6277	6.09%	5173.5	5.14%	AGL63(MADS)	A_WT_S3
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1.00E-40	-93.2	0	10436	10.13%	8967.3	8.92%	SPCH(bHLH)	A_WT_S3
"ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer"	AGGAARCAGCTG	1.00E-40	-92.68	0	1323	1.28%	875	0.87%	"ETS:E-box(ETS,bHLH)"	A_WT_S3
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1.00E-39	-91.89	0	19279	18.71%	17230.9	17.13%	MYB101(MYB)	A_WT_S3
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1.00E-39	-91.57	0	9964	9.67%	8543.5	8.50%	STAT4(Stat)	A_WT_S3
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1.00E-39	-90.99	0	6483	6.29%	5371.7	5.34%	HY5(bZIP)	A_WT_S3
"GFY-Staf(?,Zf)/Promoter/Homer"	RACTACAATTCCCAGAAKGC	1.00E-39	-90.31	0	728	0.71%	418	0.42%	"GFY-Staf(?,Zf)"	A_WT_S3
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1.00E-38	-89.08	0	22741	22.07%	20529.3	20.41%	Twist2(bHLH)	A_WT_S3
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1.00E-38	-88.02	0	16276	15.80%	14440	14.36%	JGL(C2H2)	A_WT_S3
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1.00E-37	-87.06	0	11895	11.55%	10358.5	10.30%	RUNX1(Runt)	A_WT_S3
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1.00E-36	-84.11	0	4993	4.85%	4066.9	4.04%	Klf4(Zf)	A_WT_S3
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1.00E-36	-83.7	0	20841	20.23%	18780.5	18.68%	Smad4(MAD)	A_WT_S3
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1.00E-36	-83.37	0	4726	4.59%	3831.1	3.81%	Dlx3(Homeobox)	A_WT_S3
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1.00E-35	-82.16	0	14304	13.88%	12640.5	12.57%	KLF6(Zf)	A_WT_S3
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1.00E-34	-79.93	0	3624	3.52%	2869.4	2.85%	DREB19(AP2EREBP)	A_WT_S3
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1.00E-34	-79.83	0	12535	12.17%	11007.4	10.95%	EBF1(EBF)	A_WT_S3
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1.00E-34	-78.9	0	20371	19.77%	18381.7	18.28%	Smad2(MAD)	A_WT_S3
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1.00E-33	-77.56	0	13679	13.28%	12093.8	12.03%	Lhx3(Homeobox)	A_WT_S3
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1.00E-33	-76.74	0	9881	9.59%	8566.8	8.52%	Myf5(bHLH)	A_WT_S3
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1.00E-33	-76.39	0	2959	2.87%	2300.7	2.29%	Pbx3(Homeobox)	A_WT_S3
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1.00E-32	-75.33	0	3555	3.45%	2827.9	2.81%	Zfp281(Zf)	A_WT_S3
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1.00E-32	-75.05	0	21275	20.65%	19276.8	19.17%	AT5G23930(mTERF)	A_WT_S3
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1.00E-32	-74.78	0	5761	5.59%	4804.9	4.78%	CLOCK(bHLH)	A_WT_S3
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1.00E-31	-73.22	0	2484	2.41%	1899.5	1.89%	bHLH74(bHLH)	A_WT_S3
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1.00E-31	-73.05	0	1775	1.72%	1294.7	1.29%	bZIP69(bZIP)	A_WT_S3
SeqBias: G/A bias	RRRRRRRRRR	1.00E-31	-71.81	0	102975	99.96%	100387.4	99.83%	SeqBias: G	A_WT_S3
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1.00E-31	-71.48	0	6959	6.75%	5913.3	5.88%	Foxf1(Forkhead)	A_WT_S3
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1.00E-30	-71.27	0	2542	2.47%	1956.1	1.95%	VIP1(bZIP)	A_WT_S3
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1.00E-30	-69.96	0	15100	14.66%	13491.4	13.42%	MYB33(MYB)	A_WT_S3
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1.00E-30	-69.96	0	21227	20.60%	19283.9	19.18%	Nkx6.1(Homeobox)	A_WT_S3
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1.00E-30	-69.39	0	7077	6.87%	6034.6	6.00%	Foxa2(Forkhead)	A_WT_S3
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1.00E-30	-69.34	0	5795	5.63%	4865.4	4.84%	Stat3(Stat)	A_WT_S3
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1.00E-29	-68.17	0	34457	33.45%	31965.5	31.79%	Trl(Zf)	A_WT_S3
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1.00E-29	-66.83	0	10254	9.95%	8985	8.93%	MYB65(MYB)	A_WT_S3
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1.00E-28	-66.17	0	1979	1.92%	1488.1	1.48%	PIF7(bHLH)	A_WT_S3
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1.00E-28	-65.07	0	3153	3.06%	2515.1	2.50%	E-box	A_WT_S3
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1.00E-27	-64.4	0	12260	11.90%	10877	10.82%	MYB70(MYB)	A_WT_S3
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1.00E-27	-64.32	0	2818	2.74%	2223.9	2.21%	Pknox1(Homeobox)	A_WT_S3
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1.00E-27	-62.28	0	3723	3.61%	3034.8	3.02%	FOXP1(Forkhead)	A_WT_S3
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1.00E-26	-61.77	0	2172	2.11%	1669.6	1.66%	MYB98(MYB)	A_WT_S3
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1.00E-26	-60.43	0	8693	8.44%	7586	7.54%	FOXK1(Forkhead)	A_WT_S3
"OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer"	ATGAATATTCATGAG	1.00E-26	-60.22	0	105	0.10%	29.8	0.03%	"OCT:OCT(POU,Homeobox)"	A_WT_S3
SeqBias: A/T bias	WWWWWWWWWW	1.00E-25	-58.48	0	79085	76.77%	75786.5	75.36%	SeqBias: A	A_WT_S3
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1.00E-25	-58.22	0	9381	9.11%	8241.9	8.20%	TAGL1(MADS)	A_WT_S3
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1.00E-25	-58.01	0	5847	5.68%	4980.5	4.95%	DLX5(Homeobox)	A_WT_S3
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1.00E-24	-56.6	0	3779	3.67%	3112.5	3.10%	WUS1(Homeobox)	A_WT_S3
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1.00E-24	-56.23	0	6530	6.34%	5618.8	5.59%	SGR5(C2H2)	A_WT_S3
Tal1	CATCTG	1.00E-24	-56.19	0	16255	15.78%	14715.6	14.63%	Tal1	A_WT_S3
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1.00E-24	-55.47	0	2187	2.12%	1705.7	1.70%	Unknown1(NR	A_WT_S3
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1.00E-23	-54.84	0	4972	4.83%	4201.8	4.18%	STAT6(Stat)	A_WT_S3
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1.00E-23	-53.89	0	1105	1.07%	785.6	0.78%	BIM1(bHLH)	A_WT_S3
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1.00E-23	-53.56	0	1110	1.08%	790.2	0.79%	PBX1(Homeobox)	A_WT_S3
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1.00E-23	-53.54	0	1075	1.04%	761	0.76%	AGL15(MADS)	A_WT_S3
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1.00E-22	-51.7	0	7689	7.46%	6721.1	6.68%	AtHB32(ZFHD)	A_WT_S3
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1.00E-22	-51.65	0	46963	45.59%	44308.6	44.06%	AR-halfsite(NR)	A_WT_S3
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1.00E-22	-51.33	0	10958	10.64%	9773.2	9.72%	ZNF467(Zf)	A_WT_S3
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1.00E-22	-51.23	0	10957	10.64%	9774	9.72%	PIF5ox(bHLH)	A_WT_S3
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1.00E-22	-51.17	0	6418	6.23%	5550.8	5.52%	Gfi1b(Zf)	A_WT_S3
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1.00E-22	-50.69	0	10168	9.87%	9039.5	8.99%	AT1G69570(C2C2dof)	A_WT_S3
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1.00E-21	-50.12	0	7735	7.51%	6776.7	6.74%	TBP3(MYBrelated)	A_WT_S3
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1.00E-21	-50.1	0	11111	10.79%	9928.4	9.87%	MafA(bZIP)	A_WT_S3
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1.00E-21	-49.53	0	12366	12.00%	11113	11.05%	DLX2(Homeobox)	A_WT_S3
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1.00E-21	-49.26	0	15411	14.96%	13991.2	13.91%	At5g18450(AP2EREBP)	A_WT_S3
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1.00E-21	-48.59	0	607	0.59%	392.2	0.39%	NFkB-p65-Rel(RHD)	A_WT_S3
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1.00E-21	-48.42	0	1321	1.28%	982.4	0.98%	Unknown3	A_WT_S3
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1.00E-21	-48.37	0	5547	5.38%	4768.8	4.74%	Hand2(bHLH)	A_WT_S3
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1.00E-20	-48.32	0	2867	2.78%	2336.8	2.32%	DREB2(AP2EREBP)	A_WT_S3
"Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer"	ATGAATATTC	1.00E-20	-48.32	0	658	0.64%	433.1	0.43%	"Brn2(POU,Homeobox)"	A_WT_S3
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1.00E-20	-47.88	0	5825	5.65%	5027.5	5.00%	PRDM1(Zf)	A_WT_S3
"Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer"	AGGTGHCAGACA	1.00E-20	-47.84	0	2221	2.16%	1765.5	1.76%	"Tbox:Smad(T-box,MAD)"	A_WT_S3
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1.00E-20	-47.64	0	10022	9.73%	8930.5	8.88%	EBF2(EBF)	A_WT_S3
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1.00E-20	-47.38	0	2542	2.47%	2051.8	2.04%	M1BP(Zf)	A_WT_S3
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1.00E-20	-47.34	0	2307	2.24%	1843.3	1.83%	EBF(EBF)	A_WT_S3
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1.00E-20	-46.39	0	172	0.17%	75.4	0.07%	GFX(?)	A_WT_S3
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1.00E-19	-45.83	0	33540	32.56%	31392.3	31.22%	HuR(?)	A_WT_S3
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1.00E-19	-45.73	0	2583	2.51%	2095.7	2.08%	Foxa3(Forkhead)	A_WT_S3
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1.00E-19	-45.62	0	9671	9.39%	8620.9	8.57%	RIN(MADS)	A_WT_S3
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1.00E-19	-45.39	0	8836	8.58%	7841.2	7.80%	Lhx1(Homeobox)	A_WT_S3
"Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer"	TATGCWAATBAV	1.00E-19	-45.16	0	2635	2.56%	2144.7	2.13%	"Brn1(POU,Homeobox)"	A_WT_S3
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1.00E-19	-44.94	0	6084	5.91%	5287.3	5.26%	NAP(NAC)	A_WT_S3
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1.00E-19	-44.83	0	4938	4.79%	4234	4.21%	NFkB-p65(RHD)	A_WT_S3
"NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer"	WNTGTTTRYTTTGGCA	1.00E-19	-44.8	0	532	0.52%	340.8	0.34%	"NF1:FOXA1(CTF,Forkhead)"	A_WT_S3
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1.00E-19	-44.73	0	2154	2.09%	1719.7	1.71%	bZIP28(bZIP)	A_WT_S3
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1.00E-19	-44.68	0	2750	2.67%	2249.8	2.24%	bZIP48(bZIP)	A_WT_S3
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1.00E-19	-44.56	0	3483	3.38%	2909.4	2.89%	At5g08750(C3H)	A_WT_S3
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1.00E-19	-44.29	0	17479	16.97%	16012.9	15.92%	Isl1(Homeobox)	A_WT_S3
"NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer"	SARTGGAAAAWRTGAGTCAB	1.00E-19	-43.88	0	1555	1.51%	1198.2	1.19%	"NFAT:AP1(RHD,bZIP)"	A_WT_S3
"Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer"	GATTTGCATA	1.00E-18	-43.36	0	2483	2.41%	2017.3	2.01%	"Oct11(POU,Homeobox)"	A_WT_S3
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1.00E-18	-43.29	0	4142	4.02%	3515.2	3.50%	bZIP3(bZIP)	A_WT_S3
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1.00E-18	-42.77	0	3161	3.07%	2628.5	2.61%	AT1G76870(Trihelix)	A_WT_S3
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1.00E-18	-42.72	0	3093	3.00%	2567.2	2.55%	bHLHE40(bHLH)	A_WT_S3
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1.00E-18	-41.97	0	2405	2.33%	1954	1.94%	AREB3(bZIP)	A_WT_S3
"OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer"	ATTTGCATAACAATG	1.00E-17	-40.89	0	1301	1.26%	989.6	0.98%	"OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)"	A_WT_S3
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1.00E-17	-40.61	0	25140	24.40%	23386.8	23.26%	Nkx3.1(Homeobox)	A_WT_S3
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1.00E-17	-39.5	0	8764	8.51%	7828.8	7.79%	VND6(NAC)	A_WT_S3
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1.00E-17	-39.21	0	6350	6.16%	5578.1	5.55%	FoxL2(Forkhead)	A_WT_S3
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1.00E-16	-38.89	0	720	0.70%	504.9	0.50%	NFE2L2(bZIP)	A_WT_S3
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1.00E-16	-38.89	0	3295	3.20%	2771.8	2.76%	DEL2(E2FDP)	A_WT_S3
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1.00E-16	-38.41	0	12806	12.43%	11649	11.58%	AtGRF6(GRF)	A_WT_S3
"OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer"	ATGAATWATTCATGA	1.00E-16	-38.14	0	166	0.16%	78.8	0.08%	"OCT:OCT(POU,Homeobox,IR1)"	A_WT_S3
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1.00E-16	-37.9	0	30964	30.06%	29034.1	28.87%	PHA-4(Forkhead)	A_WT_S3
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1.00E-16	-37.26	0	7231	7.02%	6415.4	6.38%	SMB(NAC)	A_WT_S3
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1.00E-16	-37.2	0	9411	9.14%	8458.2	8.41%	ATHB33(ZFHD)	A_WT_S3
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1.00E-15	-36.74	0	8584	8.33%	7686.5	7.64%	LBD23(LOBAS2)	A_WT_S3
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1.00E-15	-36.49	0	2000	1.94%	1619.8	1.61%	MYB119(MYB)	A_WT_S3
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1.00E-15	-35.94	0	14758	14.33%	13530.3	13.45%	MyoG(bHLH)	A_WT_S3
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1.00E-15	-35.38	0	64842	62.94%	62071	61.72%	bZIP18(bZIP)	A_WT_S3
"Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer"	WATGCAAATGAG	1.00E-15	-35.02	0	3503	3.40%	2984.1	2.97%	"Oct6(POU,Homeobox)"	A_WT_S3
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1.00E-15	-34.6	0	1003	0.97%	754	0.75%	MYB3R4(MYB)	A_WT_S3
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1.00E-14	-34.09	0	4254	4.13%	3679.5	3.66%	E-box	A_WT_S3
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1.00E-14	-34.01	0	7621	7.40%	6810.6	6.77%	WT1(Zf)	A_WT_S3
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1.00E-14	-33.51	0	10215	9.92%	9255	9.20%	KAN2(G2like)	A_WT_S3
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1.00E-14	-33.24	0	957	0.93%	719.7	0.72%	ZNF317(Zf)	A_WT_S3
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1.00E-14	-33.02	0	7221	7.01%	6445.7	6.41%	VND2(NAC)	A_WT_S3
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1.00E-14	-32.83	0	9889	9.60%	8955.3	8.91%	FOXA1(Forkhead)	A_WT_S3
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1.00E-14	-32.71	0	412	0.40%	268.3	0.27%	ZBTB33(Zf)	A_WT_S3
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1.00E-14	-32.65	0	1736	1.69%	1402.8	1.39%	ABF2(bZIP)	A_WT_S3
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1.00E-14	-32.35	0	2463	2.39%	2055.9	2.04%	bZIP53(bZIP)	A_WT_S3
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1.00E-14	-32.33	0	2027	1.97%	1663.1	1.65%	Tcfcp2l1(CP2)	A_WT_S3
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1.00E-13	-32.06	0	394	0.38%	255	0.25%	AGL25(MADS)	A_WT_S3
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1.00E-13	-31.69	0	663	0.64%	475.5	0.47%	AGL16(MADS)	A_WT_S3
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1.00E-13	-31.1	0	1701	1.65%	1378.3	1.37%	GBF6(bZIP)	A_WT_S3
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1.00E-13	-31.09	0	5986	5.81%	5309.7	5.28%	ATHB13(Homeobox)	A_WT_S3
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1.00E-13	-30.81	0	4972	4.83%	4368.5	4.34%	Foxh1(Forkhead)	A_WT_S3
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1.00E-13	-30.53	0	6381	6.19%	5683.1	5.65%	ANAC071(NAC)	A_WT_S3
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1.00E-13	-30.51	0	5175	5.02%	4559.4	4.53%	STAT6(Stat)	A_WT_S3
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1.00E-13	-30.37	0	8449	8.20%	7626	7.58%	NAM(NAC)	A_WT_S3
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1.00E-13	-30.31	0	1680	1.63%	1364	1.36%	Dorsal(RHD)	A_WT_S3
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1.00E-13	-30.28	0	2610	2.53%	2200.3	2.19%	bHLH34(bHLH)	A_WT_S3
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1.00E-13	-30.19	0	15802	15.34%	14603.8	14.52%	Rbpj1(?)	A_WT_S3
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1.00E-13	-29.96	0	4438	4.31%	3880.7	3.86%	NTM1(NAC)	A_WT_S3
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1.00E-12	-29.44	0	4094	3.97%	3566.1	3.55%	At1g36060(AP2EREBP)	A_WT_S3
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1.00E-12	-28.81	0	919	0.89%	701.1	0.70%	SPL14(SBP)	A_WT_S3
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1.00E-12	-28.62	0	5457	5.30%	4838.4	4.81%	HAT2(Homeobox)	A_WT_S3
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1.00E-12	-28.46	0	5991	5.82%	5338.3	5.31%	GATA4(C2C2gata)	A_WT_S3
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1.00E-12	-28.46	0	2489	2.42%	2101.4	2.09%	GBF5(bZIP)	A_WT_S3
"OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer"	ATGCATWATGCATRW	1.00E-12	-28.29	0	4457	4.33%	3912	3.89%	"OCT:OCT-short(POU,Homeobox)"	A_WT_S3
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1.00E-12	-28.17	0	5880	5.71%	5237.2	5.21%	MYB116(MYB)	A_WT_S3
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1.00E-12	-28.16	0	18775	18.22%	17477.4	17.38%	ANAC038(NAC)	A_WT_S3
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1.00E-12	-27.89	0	5172	5.02%	4579.3	4.55%	PRDM9(Zf)	A_WT_S3
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1.00E-11	-27.4	0	5031	4.88%	4453	4.43%	ZNF7(Zf)	A_WT_S3
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1.00E-11	-27.14	0	15526	15.07%	14385.6	14.31%	CDF3(C2C2dof)	A_WT_S3
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1.00E-11	-26.96	0	2347	2.28%	1981.4	1.97%	NRF(NRF)	A_WT_S3
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1.00E-11	-26.65	0	20117	19.53%	18789.3	18.68%	ATAF1(NAC)	A_WT_S3
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1.00E-11	-26.52	0	2086	2.02%	1747	1.74%	NRF1(NRF)	A_WT_S3
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1.00E-11	-26.43	0	4779	4.64%	4226.4	4.20%	c-Myc(bHLH)	A_WT_S3
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1.00E-11	-26.05	0	10138	9.84%	9272.5	9.22%	ZNF189(Zf)	A_WT_S3
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1.00E-11	-25.76	0	7095	6.89%	6401.7	6.37%	DEAR2(AP2EREBP)	A_WT_S3
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1.00E-11	-25.75	0	262	0.25%	163	0.16%	AGL13(MADS)	A_WT_S3
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1.00E-11	-25.51	0	1420	1.38%	1154.7	1.15%	REB1	A_WT_S3
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1.00E-10	-25.22	0	2027	1.97%	1701.8	1.69%	MYB118(MYB)	A_WT_S3
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1.00E-10	-25.11	0	7827	7.60%	7098.8	7.06%	FOXA1(Forkhead)	A_WT_S3
"bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer"	NAGTTTCABTHTGACTNW	1.00E-10	-24.5	0	4176	4.05%	3682.9	3.66%	"bZIP:IRF(bZIP,IRF)"	A_WT_S3
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1.00E-10	-24.47	0	3339	3.24%	2907.9	2.89%	STAT5(Stat)	A_WT_S3
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1.00E-10	-24.34	0	2664	2.59%	2287.7	2.27%	bZIP68(bZIP)	A_WT_S3
"LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer"	RGGTTACTANAGGTCA	1.00E-10	-24.14	0	488	0.47%	349.6	0.35%	"LXRE(NR),DR4"	A_WT_S3
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1.00E-10	-24	0	3439	3.34%	3003.1	2.99%	CAMTA1(CAMTA)	A_WT_S3
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1.00E-10	-23.92	0	1832	1.78%	1532.8	1.52%	RRTF1(AP2EREBP)	A_WT_S3
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1.00E-10	-23.8	0	4613	4.48%	4095.8	4.07%	CHR(?)	A_WT_S3
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1.00E-10	-23.6	0	17595	17.08%	16423.1	16.33%	AT1G28160(AP2EREBP)	A_WT_S3
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1.00E-10	-23.46	0	19862	19.28%	18601.6	18.50%	AT5G02460(C2C2dof)	A_WT_S3
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1.00E-10	-23.41	0	5248	5.09%	4692.1	4.67%	ATHB5(HB)	A_WT_S3
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1.00E-10	-23.17	0	1520	1.48%	1255.3	1.25%	Twist(bHLH)	A_WT_S3
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1.00E-10	-23.15	0	8512	8.26%	7769.5	7.73%	DPL-1(E2F)	A_WT_S3
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1.00E-10	-23.11	0	3333	3.24%	2912.1	2.90%	ABI5(bZIP)	A_WT_S3
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1.00E-09	-23	0	1272	1.23%	1034.9	1.03%	ZNF675(Zf)	A_WT_S3
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1.00E-09	-22.49	0	6150	5.97%	5548	5.52%	CEJ1(AP2EREBP)	A_WT_S3
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1.00E-09	-22.27	0	2511	2.44%	2161.8	2.15%	Zfp809(Zf)	A_WT_S3
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1.00E-09	-22.17	0	2679	2.60%	2316.1	2.30%	Tbx20(T-box)	A_WT_S3
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1.00E-09	-22	0	9298	9.03%	8529.2	8.48%	NFY(CCAAT)	A_WT_S3
"RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer"	GGGRAARRGRMCAGMTG	1.00E-09	-21.86	0	3835	3.72%	3388.9	3.37%	"RBPJ:Ebox(?,bHLH)"	A_WT_S3
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1.00E-09	-21.76	0	2127	2.06%	1813.7	1.80%	bZIP16(bZIP)	A_WT_S3
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1.00E-09	-21.37	0	185	0.18%	111.6	0.11%	T1ISRE(IRF)	A_WT_S3
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1.00E-09	-21.2	0	16178	15.70%	15107.4	15.02%	ANAC046(NAC)	A_WT_S3
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1.00E-09	-20.82	0	6371	6.18%	5775.5	5.74%	MYB56(MYB)	A_WT_S3
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1.00E-09	-20.78	0	19809	19.23%	18601.1	18.50%	Meis1(Homeobox)	A_WT_S3
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1.00E-09	-20.73	0	5958	5.78%	5387.4	5.36%	ATHB23(ZFHD)	A_WT_S3
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1.00E-08	-20.71	0	33292	32.32%	31622	31.45%	ARF2(ARF)	A_WT_S3
"ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer"	VAGGTCACNSTGACC	1.00E-08	-20.58	0	2949	2.86%	2577.4	2.56%	"ERE(NR),IR3"	A_WT_S3
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1.00E-08	-19.9	0	7479	7.26%	6833.2	6.80%	n-Myc(bHLH)	A_WT_S3
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1.00E-08	-19.87	0	4225	4.10%	3770.6	3.75%	ANAC005(NAC)	A_WT_S3
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1.00E-08	-19.54	0	1879	1.82%	1601	1.59%	At5g65130(AP2EREBP)	A_WT_S3
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1.00E-08	-19.47	0	1077	1.05%	877.1	0.87%	GATA6(C2C2gata)	A_WT_S3
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1.00E-08	-19.37	0	4317	4.19%	3861.5	3.84%	AT3G10030(Trihelix)	A_WT_S3
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1.00E-08	-19.19	0	1668	1.62%	1411	1.40%	MYB3R1(MYB)	A_WT_S3
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1.00E-08	-19.19	0	5849	5.68%	5302.2	5.27%	VND1(NAC)	A_WT_S3
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1.00E-08	-18.96	0	7089	6.88%	6476.5	6.44%	Pdx1(Homeobox)	A_WT_S3
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1.00E-08	-18.92	0	3149	3.06%	2776	2.76%	AtIDD11(C2H2)	A_WT_S3
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1.00E-08	-18.9	0	7806	7.58%	7156.7	7.12%	LIN-39(Homeobox)	A_WT_S3
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1.00E-08	-18.79	0	4488	4.36%	4027	4.00%	ANAC047(NAC)	A_WT_S3
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1.00E-08	-18.77	0	2239	2.17%	1936.9	1.93%	MafF(bZIP)	A_WT_S3
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1.00E-08	-18.71	0	8386	8.14%	7709.6	7.67%	ANAC070(NAC)	A_WT_S3
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1.00E-08	-18.53	0	10591	10.28%	9810.3	9.76%	GRF9(GRF)	A_WT_S3
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1.00E-08	-18.44	0	3617	3.51%	3216	3.20%	AIL7(AP2EREBP)	A_WT_S3
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1.00E-07	-18.3	0	18104	17.57%	17011.3	16.92%	dof24(C2C2dof)	A_WT_S3
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1.00E-07	-17.89	0	10446	10.14%	9682.3	9.63%	SOL1(CPP)	A_WT_S3
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1.00E-07	-17.78	0	10879	10.56%	10097.6	10.04%	TCX2(CPP)	A_WT_S3
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1.00E-07	-17.42	0	178	0.17%	112.4	0.11%	bZIP44(bZIP)	A_WT_S3
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1.00E-07	-17.42	0	1590	1.54%	1351.4	1.34%	Hoxb4(Homeobox)	A_WT_S3
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1.00E-07	-17.4	0	417	0.40%	308.9	0.31%	MYB3R5(MYB)	A_WT_S3
"NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer"	GGGGGAATCCCC	1.00E-07	-17.08	0	1104	1.07%	913.7	0.91%	"NFkB-p50,p52(RHD)"	A_WT_S3
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1.00E-07	-17.05	0	20525	19.92%	19368.1	19.26%	Ascl1(bHLH)	A_WT_S3
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1.00E-07	-16.91	0	15009	14.57%	14066	13.99%	Unknown2	A_WT_S3
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1.00E-07	-16.91	0	5503	5.34%	5003.5	4.98%	SND3(NAC)	A_WT_S3
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1.00E-07	-16.77	0	5893	5.72%	5373.6	5.34%	ZBTB18(Zf)	A_WT_S3
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1.00E-07	-16.68	0	32226	31.28%	30689.2	30.52%	Zac1(Zf)	A_WT_S3
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1.00E-07	-16.53	0	5496	5.33%	5001.5	4.97%	ANAC028(NAC)	A_WT_S3
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1.00E-07	-16.48	0	5311	5.16%	4827.6	4.80%	ATHB34(ZFHD)	A_WT_S3
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1.00E-07	-16.23	0	10501	10.19%	9762.7	9.71%	DLX1(Homeobox)	A_WT_S3
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1.00E-07	-16.13	0	3672	3.56%	3290.5	3.27%	LMI1(HB)	A_WT_S3
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1.00E-06	-15.93	0	8328	8.08%	7695.1	7.65%	BIM2(bHLH)	A_WT_S3
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1.00E-06	-15.91	0	12824	12.45%	11990.7	11.92%	PIF4(bHLH)	A_WT_S3
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1.00E-06	-15.71	0	3724	3.61%	3343.7	3.33%	At2g41835(C2H2)	A_WT_S3
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1.00E-06	-15.69	0	1375	1.33%	1166.7	1.16%	bHLH28(bHLH)	A_WT_S3
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1.00E-06	-15.57	0	761	0.74%	614.4	0.61%	AGL6(MADS)	A_WT_S3
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1.00E-06	-15.53	0	9727	9.44%	9035.4	8.98%	Hoxd10(Homeobox)	A_WT_S3
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1.00E-06	-15.49	0	4320	4.19%	3905.2	3.88%	MYB105(MYB)	A_WT_S3
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1.00E-06	-15.09	0	4364	4.24%	3952	3.93%	AT2G15740(C2H2)	A_WT_S3
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1.00E-06	-15.03	0	2757	2.68%	2446.3	2.43%	STAT1(Stat)	A_WT_S3
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1.00E-06	-14.99	0	5106	4.96%	4652.5	4.63%	VND3(NAC)	A_WT_S3
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1.00E-06	-14.86	0	675	0.66%	541.6	0.54%	AARE(HLH)	A_WT_S3
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1.00E-06	-14.43	0	4855	4.71%	4422.4	4.40%	GATA12(C2C2gata)	A_WT_S3
"Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer"	ATTTGCATAW	1.00E-06	-14.33	0	3444	3.34%	3095.8	3.08%	"Oct4(POU,Homeobox)"	A_WT_S3
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1.00E-06	-14.31	0	6411	6.22%	5897.9	5.86%	RKD2(RWPRK)	A_WT_S3
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1.00E-06	-14.25	0	8108	7.87%	7512.9	7.47%	KANADI1(Myb)	A_WT_S3
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1.00E-06	-14.07	0	4828	4.69%	4401.7	4.38%	Unknown6	A_WT_S3
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1.00E-06	-14.01	0	3435	3.33%	3090.8	3.07%	ANAC013(NAC)	A_WT_S3
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1.00E-06	-13.98	0	630	0.61%	505.5	0.50%	Unknown1	A_WT_S3
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1.00E-05	-13.74	0	27930	27.11%	26606.5	26.46%	OBP3(C2C2dof)	A_WT_S3
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1.00E-05	-13.7	0	21502	20.87%	20390.9	20.28%	Nkx2.2(Homeobox)	A_WT_S3
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1.00E-05	-13.65	0	3899	3.78%	3530.7	3.51%	ZNF322(Zf)	A_WT_S3
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1.00E-05	-13.58	0	2032	1.97%	1786	1.78%	ATHB20(Homeobox)	A_WT_S3
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1.00E-05	-13.53	0	6460	6.27%	5955.2	5.92%	ANAC016(NAC)	A_WT_S3
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1.00E-05	-13.33	0	5022	4.87%	4594.7	4.57%	ANAC096(NAC)	A_WT_S3
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1.00E-05	-13.32	0	884	0.86%	735.2	0.73%	ZSCAN22(Zf)	A_WT_S3
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1.00E-05	-13.19	0	24289	23.58%	23097.5	22.97%	Hoxa9(Homeobox)	A_WT_S3
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1.00E-05	-13.13	0	4574	4.44%	4173.4	4.15%	NTM2(NAC)	A_WT_S3
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1.00E-05	-13.09	0	5579	5.42%	5125.3	5.10%	WRKY33(WRKY)	A_WT_S3
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1.00E-05	-12.67	0	11317	10.99%	10609.4	10.55%	TATA-Box(TBP)	A_WT_S3
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1.00E-05	-12.58	0	8578	8.33%	7989.9	7.95%	FOXM1(Forkhead)	A_WT_S3
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1.00E-05	-12.54	0	1783	1.73%	1563.5	1.55%	DMRT1(DM)	A_WT_S3
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1.00E-05	-12.41	0	863	0.84%	721.7	0.72%	HAT1(Homeobox)	A_WT_S3
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1.00E-05	-12.37	0	12993	12.61%	12224.5	12.16%	AT5G05550(Trihelix)	A_WT_S3
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1.00E-05	-12.31	0	1544	1.50%	1344.8	1.34%	O2(bZIP)	A_WT_S3
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1.00E-05	-12.25	0	8106	7.87%	7544.2	7.50%	NFAT(RHD)	A_WT_S3
"GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer"	NNNNNBAGATAWYATCTVHN	1.00E-05	-12.24	0	925	0.90%	778.6	0.77%	"GATA(Zf),IR3"	A_WT_S3
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1.00E-05	-12.14	0	2080	2.02%	1842.6	1.83%	DDF1(AP2EREBP)	A_WT_S3
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1.00E-05	-12.05	0	7435	7.22%	6907.2	6.87%	ATHB6(Homeobox)	A_WT_S3
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1.00E-05	-11.97	0	612	0.59%	498.3	0.50%	Unknown4	A_WT_S3
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1.00E-05	-11.94	0	5656	5.49%	5215.5	5.19%	ANAC057(NAC)	A_WT_S3
"FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer"	AGGTCANTGACCTB	1.00E-05	-11.88	0	3941	3.83%	3591.7	3.57%	"FXR(NR),IR1"	A_WT_S3
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1.00E-05	-11.83	0	14721	14.29%	13898.1	13.82%	SPL1(SBP)	A_WT_S3
"Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer"	ATATGCAAAT	1.00E-05	-11.83	0	2048	1.99%	1815.9	1.81%	"Oct2(POU,Homeobox)"	A_WT_S3
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1.00E-05	-11.76	0	4278	4.15%	3911.7	3.89%	ATHB6(Homeobox)	A_WT_S3
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1.00E-05	-11.69	0	1881	1.83%	1661.3	1.65%	HOXA1(Homeobox)	A_WT_S3
"PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer"	GTCACGCTCSCTGM	1.00E-05	-11.68	0	1120	1.09%	959.2	0.95%	"PAX5(Paired,Homeobox),condensed"	A_WT_S3
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1.00E-05	-11.55	0	20884	20.27%	19850.6	19.74%	AT2G28810(C2C2dof)	A_WT_S3
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1.00E-04	-11.5	0	875	0.85%	737.4	0.73%	ATHB18(Homeobox)	A_WT_S3
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1.00E-04	-11.41	0	3067	2.98%	2773.8	2.76%	ANAC004(NAC)	A_WT_S3
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1.00E-04	-11.36	0	565	0.55%	459.6	0.46%	CDM1(C3H)	A_WT_S3
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1.00E-04	-11.35	0	12368	12.01%	11646.5	11.58%	AT1G71450(AP2EREBP)	A_WT_S3
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1.00E-04	-11.07	0	2931	2.85%	2649.5	2.63%	GATA1(C2C2gata)	A_WT_S3
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1.00E-04	-11.01	0	2191	2.13%	1956.7	1.95%	EKLF(Zf)	A_WT_S3
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1.00E-04	-10.95	0	2231	2.17%	1994.3	1.98%	At5g66730(C2H2)	A_WT_S3
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1.00E-04	-10.82	0	5274	5.12%	4869.3	4.84%	NAC2(NAC)	A_WT_S3
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1.00E-04	-10.76	0	230	0.22%	170	0.17%	ZNF41(Zf)	A_WT_S3
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1.00E-04	-10.73	0	17939	17.41%	17028.7	16.93%	At2g33710(AP2EREBP)	A_WT_S3
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1.00E-04	-10.37	1.00E-04	15241	14.79%	14435.9	14.36%	ERF105(AP2EREBP)	A_WT_S3
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1.00E-04	-10.32	1.00E-04	252	0.24%	189.7	0.19%	SPL3(SBP)	A_WT_S3
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1.00E-04	-10.28	1.00E-04	9551	9.27%	8965.9	8.92%	bHLH80(bHLH)	A_WT_S3
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1.00E-04	-10.19	1.00E-04	764	0.74%	644.9	0.64%	WRKY11(WRKY)	A_WT_S3
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1.00E-04	-10.17	1.00E-04	2356	2.29%	2119.9	2.11%	SPL5(SBP)	A_WT_S3
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1.00E-04	-10.17	1.00E-04	9583	9.30%	8998.5	8.95%	ZNF341(Zf)	A_WT_S3
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1.00E-04	-10.05	1.00E-04	1717	1.67%	1523.4	1.51%	DREB26(AP2EREBP)	A_WT_S3
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1.00E-04	-9.951	1.00E-04	2575	2.50%	2327.3	2.31%	CArG(MADS)	A_WT_S3
"GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer"	CRGCTGBNGNSNNSAGATAA	1.00E-04	-9.89	1.00E-04	1063	1.03%	919.1	0.91%	"GATA:SCL(Zf,bHLH)"	A_WT_S3
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1.00E-04	-9.88	1.00E-04	2947	2.86%	2678.1	2.66%	AT1G12630(AP2EREBP)	A_WT_S3
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1.00E-04	-9.842	1.00E-04	1894	1.84%	1690.8	1.68%	Srebp1a(bHLH)	A_WT_S3
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1.00E-04	-9.738	1.00E-04	19388	18.82%	18456.1	18.35%	SPL9(SBP)	A_WT_S3
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1.00E-04	-9.707	1.00E-04	3657	3.55%	3352	3.33%	GATA11(C2C2gata)	A_WT_S3
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1.00E-04	-9.657	1.00E-04	4890	4.75%	4523	4.50%	ATHB24(ZFHD)	A_WT_S3
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1.00E-04	-9.608	1.00E-04	20140	19.55%	19187.4	19.08%	Hoxa13(Homeobox)	A_WT_S3
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1.00E-04	-9.606	1.00E-04	531	0.52%	437.2	0.43%	SPL13(SBP)	A_WT_S3
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1.00E-04	-9.594	1.00E-04	2938	2.85%	2673.6	2.66%	CES-1(Homeobox)	A_WT_S3
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1.00E-04	-9.558	1.00E-04	1369	1.33%	1204	1.20%	AT3G58630(Trihelix)	A_WT_S3
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1.00E-04	-9.415	2.00E-04	1441	1.40%	1272.7	1.27%	bHLH10(bHLH)	A_WT_S3
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1.00E-04	-9.272	2.00E-04	4646	4.51%	4296.8	4.27%	ANAC020(NAC)	A_WT_S3
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1.00E-04	-9.228	2.00E-04	6202	6.02%	5780.7	5.75%	NST1(NAC)	A_WT_S3
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	0.001	-9.198	2.00E-04	5234	5.08%	4857.2	4.83%	AT3G25990(Trihelix)	A_WT_S3
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	0.001	-9.066	2.00E-04	2967	2.88%	2707.5	2.69%	ANAC011(NAC)	A_WT_S3
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	0.001	-8.88	3.00E-04	15565	15.11%	14788.1	14.71%	ZFX(Zf)	A_WT_S3
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	0.001	-8.864	3.00E-04	1985	1.93%	1785.4	1.78%	HRE(HSF)	A_WT_S3
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	0.001	-8.849	3.00E-04	3542	3.44%	3254.4	3.24%	GBF3(bZIP)	A_WT_S3
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	0.001	-8.843	3.00E-04	181	0.18%	133.1	0.13%	EBNA1(EBV-virus)	A_WT_S3
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	0.001	-8.776	3.00E-04	6945	6.74%	6499.9	6.46%	Npas4(bHLH)	A_WT_S3
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	0.001	-8.763	3.00E-04	1437	1.39%	1274.5	1.27%	TOD6?	A_WT_S3
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	0.001	-8.744	3.00E-04	1188	1.15%	1043.2	1.04%	GT3a(Trihelix)	A_WT_S3
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	0.001	-8.675	4.00E-04	1434	1.39%	1272.6	1.27%	bHLH157(bHLH)	A_WT_S3
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	0.001	-8.633	4.00E-04	5336	5.18%	4964.8	4.94%	VND4(NAC)	A_WT_S3
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	0.001	-8.491	4.00E-04	8362	8.12%	7863.4	7.82%	Egr1(Zf)	A_WT_S3
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	0.001	-8.447	4.00E-04	7507	7.29%	7044.4	7.01%	ATHB25(ZFHD)	A_WT_S3
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	0.001	-8.273	5.00E-04	5434	5.27%	5064.5	5.04%	SPL11(SBP)	A_WT_S3
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	0.001	-8.189	6.00E-04	12633	12.26%	11979.8	11.91%	AP-2gamma(AP2)	A_WT_S3
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	0.001	-8.165	6.00E-04	7849	7.62%	7378.8	7.34%	LBD13(LOBAS2)	A_WT_S3
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	0.001	-8.004	7.00E-04	1107	1.07%	974.7	0.97%	E2F7(E2F)	A_WT_S3
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	0.001	-7.978	7.00E-04	5943	5.77%	5556.4	5.53%	PBX2(Homeobox)	A_WT_S3
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	0.001	-7.763	9.00E-04	5879	5.71%	5499.7	5.47%	E2F6(E2F)	A_WT_S3
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	0.001	-7.727	9.00E-04	3119	3.03%	2869.5	2.85%	IDD7(C2H2)	A_WT_S3
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	0.001	-7.655	0.001	346	0.34%	281.5	0.28%	WRKY46(WRKY)	A_WT_S3
SeqBias: polyC-repeat	CCCCCCCCCC	0.001	-7.632	0.001	102843	99.83%	100340	99.78%	SeqBias: polyC-repeat	A_WT_S3
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	0.001	-7.361	0.0013	1029	1.00%	907.7	0.90%	At2g44940(AP2EREBP)	A_WT_S3
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	0.001	-7.219	0.0015	3389	3.29%	3133.9	3.12%	SVP(MADS)	A_WT_S3
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	0.001	-7.195	0.0015	1404	1.36%	1259	1.25%	AT3G60490(AP2EREBP)	A_WT_S3
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	0.001	-7.192	0.0015	12753	12.38%	12123.7	12.06%	DAG2(C2C2dof)	A_WT_S3
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	0.001	-7.134	0.0016	11166	10.84%	10594.6	10.54%	RAP26(AP2EREBP)	A_WT_S3
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	0.001	-7.113	0.0016	652	0.63%	561.7	0.56%	ARF16(ARF)	A_WT_S3
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	0.001	-7.086	0.0017	14712	14.28%	14018.2	13.94%	Hoxd12(Homeobox)	A_WT_S3
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	0.001	-7.085	0.0017	10024	9.73%	9495.4	9.44%	AT2G20110(CPP)	A_WT_S3
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	0.001	-7.083	0.0017	352	0.34%	289.2	0.29%	ZNF768(Zf)	A_WT_S3
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	0.001	-7.058	0.0017	2132	2.07%	1944.3	1.93%	At4g31060(AP2EREBP)	A_WT_S3
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	0.001	-6.996	0.0018	1934	1.88%	1758.5	1.75%	Pit1+1bp(Homeobox)	A_WT_S3
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	0.001	-6.964	0.0019	22557	21.90%	21617.7	21.50%	Znf263(Zf)	A_WT_S3
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	0.001	-6.932	0.0019	1775	1.72%	1609.5	1.60%	AT3G16280(AP2EREBP)	A_WT_S3
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	0.001	-6.929	0.0019	3777	3.67%	3507.4	3.49%	CELF2(RRM)	A_WT_S3
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	0.001	-6.916	0.0019	2921	2.84%	2693.9	2.68%	ZNF519(Zf)	A_WT_S3
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	0.01	-6.874	0.002	684	0.66%	592.4	0.59%	ZNF669(Zf)	A_WT_S3
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	0.01	-6.833	0.0021	456	0.44%	384.9	0.38%	GATA19(C2C2gata)	A_WT_S3
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	0.01	-6.831	0.0021	4692	4.55%	4382	4.36%	HOXA9(Homeobox)	A_WT_S3
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	0.01	-6.791	0.0022	4043	3.92%	3763.7	3.74%	ZNF143|STAF(Zf)	A_WT_S3
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	0.01	-6.68	0.0024	21762	21.12%	20857.7	20.74%	AT3G12130(C3H)	A_WT_S3
"Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer"	GTCATGCHTGRCTGS	0.01	-6.633	0.0025	4105	3.98%	3825.8	3.80%	"Pax8(Paired,Homeobox)"	A_WT_S3
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	0.01	-6.596	0.0026	2021	1.96%	1845.2	1.83%	LBD2(LOBAS2)	A_WT_S3
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	0.01	-6.542	0.0028	1855	1.80%	1689.2	1.68%	Pho4(bHLH)	A_WT_S3
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	0.01	-6.504	0.0029	3068	2.98%	2839.2	2.82%	Prop1(Homeobox)	A_WT_S3
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	0.01	-6.424	0.0031	3012	2.92%	2787	2.77%	Tcf7(HMG)	A_WT_S3
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	0.01	-6.393	0.0032	4315	4.19%	4030.4	4.01%	At4g16750(AP2EREBP)	A_WT_S3
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	0.01	-6.333	0.0034	2579	2.50%	2377.5	2.36%	At4g36780(BZR)	A_WT_S3
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	0.01	-6.201	0.0039	631	0.61%	548.7	0.55%	WRKY21(WRKY)	A_WT_S3
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	0.01	-6.201	0.0039	9236	8.97%	8760.2	8.71%	Replumless(BLH)	A_WT_S3
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	0.01	-6.119	0.0042	1664	1.62%	1514.1	1.51%	CAMTA5(CAMTA)	A_WT_S3
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	0.01	-6.068	0.0044	265	0.26%	216.3	0.22%	ZNF382(Zf)	A_WT_S3
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	0.01	-6.053	0.0044	2483	2.41%	2290.4	2.28%	ATHB53(HB)	A_WT_S3
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	0.01	-6.051	0.0044	509	0.49%	437.4	0.43%	p73(p53)	A_WT_S3
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	0.01	-5.988	0.0047	467	0.45%	399.6	0.40%	HSFA6A(HSF)	A_WT_S3
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	0.01	-5.977	0.0048	7096	6.89%	6706.7	6.67%	Max(bHLH)	A_WT_S3
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	0.01	-5.879	0.0053	54	0.05%	35.3	0.04%	ZML1(C2C2gata)	A_WT_S3
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	0.01	-5.874	0.0053	1558	1.51%	1417.7	1.41%	DMRT6(DM)	A_WT_S3
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	0.01	-5.814	0.0056	378	0.37%	319.7	0.32%	Six4(Homeobox)	A_WT_S3
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	0.01	-5.771	0.0058	1289	1.25%	1165.8	1.16%	Nur77(NR)	A_WT_S3
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	0.01	-5.744	0.006	5960	5.79%	5620.1	5.59%	WRKY24(WRKY)	A_WT_S3
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	0.01	-5.736	0.006	12836	12.46%	12249.7	12.18%	EAR2(NR)	A_WT_S3
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	0.01	-5.689	0.0063	12226	11.87%	11661.2	11.60%	ERF13(AP2EREBP)	A_WT_S3
"Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer"	GTRGGTCASTGGGTCA	0.01	-5.661	0.0064	1411	1.37%	1281.9	1.27%	"Reverb(NR),DR2"	A_WT_S3
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	0.01	-5.577	0.007	3032	2.94%	2820.1	2.80%	ANAC103(NAC)	A_WT_S3
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	0.01	-5.501	0.0075	4307	4.18%	4040.9	4.02%	ANAC050(NAC)	A_WT_S3
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	0.01	-5.486	0.0076	5210	5.06%	4906.2	4.88%	WRKY20(WRKY)	A_WT_S3
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	0.01	-5.484	0.0076	1292	1.25%	1171.9	1.17%	TINY(AP2EREBP)	A_WT_S3
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	0.01	-5.461	0.0078	3676	3.57%	3437.7	3.42%	WRKY26(WRKY)	A_WT_S3
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	0.01	-5.349	0.0087	1602	1.56%	1465.9	1.46%	HRE(HSF)	A_WT_S3
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	0.01	-5.33	0.0089	13816	13.41%	13211.1	13.14%	Knotted(Homeobox)	A_WT_S3
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	0.01	-5.294	0.0092	12147	11.79%	11598.5	11.53%	COG1(C2C2dof)	A_WT_S3
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	0.01	-5.21	0.01	2177	2.11%	2012.6	2.00%	WRKY43(WRKY)	A_WT_S3
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	0.01	-5.189	0.0101	626	0.61%	551.8	0.55%	HAT5(Homeobox)	A_WT_S3
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	0.01	-5.185	0.0102	6739	6.54%	6383.7	6.35%	WRKY75(WRKY)	A_WT_S3
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	0.01	-5.107	0.011	3285	3.19%	3070.8	3.05%	Rap210(AP2EREBP)	A_WT_S3
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	0.01	-5.102	0.011	2396	2.33%	2222.1	2.21%	WRKY45(WRKY)	A_WT_S3
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	0.01	-5.042	0.0117	9155	8.89%	8716.9	8.67%	AT1G72740(MYBrelated)	A_WT_S3
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	0.01	-4.858	0.014	2207	2.14%	2046.7	2.04%	AT1G44830(AP2EREBP)	A_WT_S3
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	0.01	-4.828	0.0144	4147	4.03%	3901.1	3.88%	WRKY22(WRKY)	A_WT_S3
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	0.01	-4.781	0.0151	520	0.50%	456.3	0.45%	PLT1(AP2EREBP)	A_WT_S3
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	0.01	-4.711	0.0161	461	0.45%	402.8	0.40%	AT1G23810(Orphan)	A_WT_S3
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	0.01	-4.661	0.0169	19393	18.82%	18643.1	18.54%	AT3G52440(C2C2dof)	A_WT_S3
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	0.1	-4.573	0.0185	990	0.96%	897	0.89%	CEBP:CEBP(bZIP)	A_WT_S3
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	0.1	-4.562	0.0186	9374	9.10%	8943.7	8.89%	AT5G47660(Trihelix)	A_WT_S3
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	0.1	-4.53	0.0192	17179	16.68%	16501.2	16.41%	ASL18(LOBAS2)	A_WT_S3
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	0.1	-4.526	0.0192	3107	3.02%	2912	2.90%	WRKY65(WRKY)	A_WT_S3
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	0.1	-4.482	0.0201	8369	8.12%	7975.8	7.93%	WRKY55(WRKY)	A_WT_S3
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	0.1	-4.476	0.0201	192	0.19%	158.9	0.16%	EFL-1(E2F)	A_WT_S3
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	0.1	-4.449	0.0207	9279	9.01%	8855.6	8.81%	WRKY28(WRKY)	A_WT_S3
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	0.1	-4.444	0.0207	2441	2.37%	2276.3	2.26%	At1g22810(AP2EREBP)	A_WT_S3
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	0.1	-4.435	0.0209	14018	13.61%	13441.6	13.37%	COUP-TFII(NR)	A_WT_S3
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	0.1	-4.432	0.0209	11939	11.59%	11428.3	11.36%	SPL15(SBP)	A_WT_S3
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	0.1	-4.42	0.0211	4404	4.27%	4157.9	4.13%	ATHB7(Homeobox)	A_WT_S3
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	0.1	-4.347	0.0227	4423	4.29%	4177.7	4.15%	ATHB40(HB)	A_WT_S3
"PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer"	TGACCTTTGCCCCA	0.1	-4.325	0.0231	9675	9.39%	9242.8	9.19%	"PPARE(NR),DR1"	A_WT_S3
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	0.1	-4.306	0.0236	49	0.05%	34.9	0.03%	ZIM(C2C2gata)	A_WT_S3
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	0.1	-4.069	0.0298	5951	5.78%	5655.6	5.62%	WRKY6(WRKY)	A_WT_S3
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	0.1	-4.027	0.031	1215	1.18%	1117	1.11%	At1g77640(AP2EREBP)	A_WT_S3
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	0.1	-3.994	0.032	3349	3.25%	3154.3	3.14%	Hoxc9(Homeobox)	A_WT_S3
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	0.1	-3.938	0.0338	1827	1.77%	1699.8	1.69%	Phox2a(Homeobox)	A_WT_S3
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	0.1	-3.905	0.0349	676	0.66%	609.5	0.61%	WRKY8(WRKY)	A_WT_S3
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	0.1	-3.894	0.0352	7915	7.68%	7556.8	7.51%	ABF1(bZIP)	A_WT_S3
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	0.1	-3.863	0.0363	1579	1.53%	1464	1.46%	ABF1	A_WT_S3
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	0.1	-3.598	0.0471	1272	1.23%	1176.3	1.17%	Srebp2(bHLH)	A_WT_S3
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	0.1	-3.595	0.0472	4054	3.94%	3841.5	3.82%	ANAC053(NAC)	A_WT_S3
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	0	-24060	0	16596	12.90%	1637.1	1.30%	CTCF(Zf)	A_NTG_S1
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	0	-18500	0	17315	13.46%	2629.4	2.09%	BORIS(Zf)	A_NTG_S1
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	0	-3953	0	8133	6.32%	2504.7	1.99%	SpiB(ETS)	A_NTG_S1
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	0	-3389	0	14247	11.08%	6595	5.25%	PU.1(ETS)	A_NTG_S1
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	0	-3171	0	11399	8.86%	4884.4	3.89%	NF1(CTF)	A_NTG_S1
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	0	-2627	0	17553	13.65%	9709.1	7.72%	ELF5(ETS)	A_NTG_S1
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	0	-2616	0	22683	17.63%	13667.3	10.87%	ETS1(ETS)	A_NTG_S1
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	0	-2581	0	23350	18.15%	14243.6	11.33%	Elf4(ETS)	A_NTG_S1
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	0	-2385	0	20038	15.58%	11915	9.48%	Etv2(ETS)	A_NTG_S1
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	0	-2361	0	36044	28.02%	25174.1	20.03%	NF1-halfsite(CTF)	A_NTG_S1
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	0	-2119	0	19718	15.33%	12042.2	9.58%	GABPA(ETS)	A_NTG_S1
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	0	-2085	0	16317	12.69%	9449.7	7.52%	ELF3(ETS)	A_NTG_S1
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	0	-2051	0	30811	23.95%	21291.9	16.94%	ERG(ETS)	A_NTG_S1
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	0	-1951	0	23079	17.94%	15012.8	11.94%	Fli1(ETS)	A_NTG_S1
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	0	-1784	0	29507	22.94%	20716.5	16.48%	Sox3(HMG)	A_NTG_S1
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	0	-1766	0	28299	22.00%	19721.6	15.69%	Sox10(HMG)	A_NTG_S1
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	0	-1726	0	7844	6.10%	3701.1	2.94%	Ets1-distal(ETS)	A_NTG_S1
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	0	-1682	0	25106	19.52%	17188.1	13.67%	EHF(ETS)	A_NTG_S1
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	0	-1677	0	5064	3.94%	1958.8	1.56%	PU.1:IRF8(ETS:IRF)	A_NTG_S1
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	0	-1559	0	27868	21.67%	19791.7	15.75%	ETV1(ETS)	A_NTG_S1
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	0	-1510	0	18159	14.12%	11768.5	9.36%	Sox15(HMG)	A_NTG_S1
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	0	-1479	0	7115	5.53%	3431.8	2.73%	IRF8(IRF)	A_NTG_S1
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	0	-1386	0	16072	12.50%	10300	8.19%	Sox2(HMG)	A_NTG_S1
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	0	-1351	0	11480	8.93%	6750.9	5.37%	ELF1(ETS)	A_NTG_S1
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	0	-1349	0	15710	12.21%	10071	8.01%	Sox4(HMG)	A_NTG_S1
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	0	-1280	0	29723	23.11%	22060	17.55%	Sox21(HMG)	A_NTG_S1
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	0	-1278	0	16422	12.77%	10772.4	8.57%	Sox9(HMG)	A_NTG_S1
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	0	-1258	0	13454	10.46%	8425.9	6.70%	EWS:ERG-fusion(ETS)	A_NTG_S1
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	0	-1253	0	10876	8.46%	6428	5.11%	Tlx?(NR)	A_NTG_S1
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	0	-1244	0	25344	19.70%	18337.2	14.59%	Sox6(HMG)	A_NTG_S1
ETS(ETS)/Promoter/Homer	AACCGGAAGT	0	-1218	0	7900	6.14%	4253.9	3.38%	ETS(ETS)	A_NTG_S1
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	0	-1179	0	39777	30.92%	31344.5	24.94%	HIC1(Zf)	A_NTG_S1
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	0	-1122	0	12454	9.68%	7857.2	6.25%	Sox17(HMG)	A_NTG_S1
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	0	-1096	0	22356	17.38%	16121.4	12.83%	ETV4(ETS)	A_NTG_S1
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	0	-1094	0	22907	17.81%	16599.3	13.21%	PU.1-IRF(ETS:IRF)	A_NTG_S1
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	0	-1028	0	7681	5.97%	4324	3.44%	NFIL3(bZIP)	A_NTG_S1
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	0	-898.4	0	5570	4.33%	2942.1	2.34%	CREB5(bZIP)	A_NTG_S1
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	0	-881.1	0	1007	0.78%	183.1	0.15%	CTCF-SatelliteElement(Zf?)	A_NTG_S1
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	0	-835.1	0	2382	1.85%	888.1	0.71%	Rfx2(HTH)	A_NTG_S1
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	0	-801.2	0	2215	1.72%	811.7	0.65%	RFX(HTH)	A_NTG_S1
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	0	-756.7	0	5684	4.42%	3195.3	2.54%	IRF3(IRF)	A_NTG_S1
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	9.99999998481684e-316	-725.4	0	11010	8.56%	7424.4	5.91%	EWS:FLI1-fusion(ETS)	A_NTG_S1
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	0.00E+00	-709.4	0	12865	10.00%	8992.1	7.15%	Bcl11a(Zf)	A_NTG_S1
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1.00E-295	-679.4	0	10463	8.13%	7071.6	5.63%	Elk4(ETS)	A_NTG_S1
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1.00E-282	-650.2	0	6970	5.42%	4328.3	3.44%	Atf7(bZIP)	A_NTG_S1
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1.00E-279	-644.6	0	1944	1.51%	747.5	0.59%	RORg(NR)	A_NTG_S1
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1.00E-277	-638.5	0	4783	3.72%	2683.9	2.14%	c-Jun-CRE(bZIP)	A_NTG_S1
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1.00E-277	-638.4	0	5186	4.03%	2982.2	2.37%	Atf2(bZIP)	A_NTG_S1
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1.00E-274	-631.8	0	15208	11.82%	11168.5	8.89%	NeuroD1(bHLH)	A_NTG_S1
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1.00E-271	-625.3	0	18127	14.09%	13713	10.91%	Sp5(Zf)	A_NTG_S1
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1.00E-266	-613.4	0	8229	6.40%	5390.1	4.29%	Fos(bZIP)	A_NTG_S1
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1.00E-262	-605.2	0	9846	7.65%	6721.8	5.35%	THRb(NR)	A_NTG_S1
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1.00E-260	-600.6	0	18721	14.55%	14307.7	11.38%	Tcf12(bHLH)	A_NTG_S1
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1.00E-259	-597.2	0	2430	1.89%	1083.7	0.86%	X-box(HTH)	A_NTG_S1
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1.00E-256	-590.5	0	2552	1.98%	1168.4	0.93%	Mef2d(MADS)	A_NTG_S1
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1.00E-251	-578.6	0	4922	3.83%	2867.5	2.28%	Mef2c(MADS)	A_NTG_S1
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1.00E-249	-574	0	17753	13.80%	13541.5	10.77%	SPDEF(ETS)	A_NTG_S1
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1.00E-243	-560	0	7778	6.05%	5130.8	4.08%	Fra1(bZIP)	A_NTG_S1
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1.00E-242	-558.2	0	9455	7.35%	6502	5.17%	HLF(bZIP)	A_NTG_S1
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1.00E-240	-554.2	0	9036	7.03%	6165.5	4.90%	Atf1(bZIP)	A_NTG_S1
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1.00E-237	-546.1	0	10870	8.45%	7706.7	6.13%	Elk1(ETS)	A_NTG_S1
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1.00E-232	-535.9	0	5500	4.28%	3372.3	2.68%	Sox7(HMG)	A_NTG_S1
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1.00E-228	-526.8	0	3969	3.09%	2228.5	1.77%	PGR(NR)	A_NTG_S1
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1.00E-226	-521.4	0	78731	61.21%	71383.9	56.79%	AZF1(C2H2)	A_NTG_S1
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1.00E-225	-519.8	0	6961	5.41%	4551.9	3.62%	Fra2(bZIP)	A_NTG_S1
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1.00E-224	-516.4	0	5241	4.07%	3203.6	2.55%	Fosl2(bZIP)	A_NTG_S1
"GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer"	VAGRACAKWCTGTYC	1.00E-223	-514	0	4412	3.43%	2575.2	2.05%	"GRE(NR),IR3"	A_NTG_S1
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1.00E-223	-513.6	0	2739	2.13%	1365.9	1.09%	IRF1(IRF)	A_NTG_S1
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1.00E-222	-511.8	0	4978	3.87%	3008.6	2.39%	Usf2(bHLH)	A_NTG_S1
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1.00E-222	-511.5	0	2631	2.05%	1293.3	1.03%	RORa(NR)	A_NTG_S1
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1.00E-220	-507.8	0	9219	7.17%	6419.3	5.11%	Atf3(bZIP)	A_NTG_S1
"GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer"	NRGVACABNVTGTYCY	1.00E-215	-496.9	0	2742	2.13%	1384.2	1.10%	"GRE(NR),IR3"	A_NTG_S1
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1.00E-208	-480.2	0	22524	17.51%	18109	14.41%	Ap4(bHLH)	A_NTG_S1
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1.00E-207	-478.3	0	7744	6.02%	5269.6	4.19%	JunB(bZIP)	A_NTG_S1
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1.00E-207	-476.9	0	509	0.40%	86.5	0.07%	REST-NRSF(Zf)	A_NTG_S1
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1.00E-204	-469.8	0	1695	1.32%	714.2	0.57%	JunD(bZIP)	A_NTG_S1
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1.00E-203	-468.3	0	10432	8.11%	7532.2	5.99%	AP-1(bZIP)	A_NTG_S1
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1.00E-199	-458.7	0	5623	4.37%	3599.3	2.86%	Sp1(Zf)	A_NTG_S1
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1.00E-198	-456.3	0	72636	56.47%	65730.6	52.29%	At3g60580(C2H2)	A_NTG_S1
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1.00E-196	-451.7	0	2549	1.98%	1297.3	1.03%	RORgt(NR)	A_NTG_S1
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1.00E-196	-451.7	0	2549	1.98%	1297.3	1.03%	RORgt(NR)	A_NTG_S1
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1.00E-193	-444.7	0	48144	37.43%	42095.7	33.49%	Tgif2(Homeobox)	A_NTG_S1
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1.00E-190	-439	0	3908	3.04%	2303.9	1.83%	Jun-AP1(bZIP)	A_NTG_S1
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1.00E-187	-431.9	0	17571	13.66%	13856.6	11.02%	Tcf21(bHLH)	A_NTG_S1
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1.00E-186	-430.3	0	4015	3.12%	2397.5	1.91%	Rfx1(HTH)	A_NTG_S1
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1.00E-186	-430	0	11035	8.58%	8149.1	6.48%	Zic3(Zf)	A_NTG_S1
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1.00E-184	-424.8	0	19731	15.34%	15812.2	12.58%	Atoh1(bHLH)	A_NTG_S1
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1.00E-181	-417	0	1559	1.21%	668.7	0.53%	TGA5(bZIP)	A_NTG_S1
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1.00E-180	-415.7	0	10809	8.40%	7996	6.36%	Unknown-ESC-element(?)	A_NTG_S1
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1.00E-177	-408.7	0	9007	7.00%	6483.4	5.16%	BATF(bZIP)	A_NTG_S1
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1.00E-175	-404.5	0	73547	57.18%	66937.1	53.25%	SCL(bHLH)	A_NTG_S1
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1.00E-173	-399.9	0	13719	10.67%	10567.5	8.41%	MITF(bHLH)	A_NTG_S1
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1.00E-168	-387.6	0	4905	3.81%	3160.4	2.51%	Mef2a(MADS)	A_NTG_S1
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1.00E-165	-381.7	0	2150	1.67%	1093.4	0.87%	IRF2(IRF)	A_NTG_S1
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1.00E-162	-375	0	25588	19.89%	21345.1	16.98%	NeuroG2(bHLH)	A_NTG_S1
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1.00E-161	-370.8	0	9302	7.23%	6835.1	5.44%	Mef2b(MADS)	A_NTG_S1
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1.00E-159	-367	0	23946	18.62%	19879	15.81%	BHLHA15(bHLH)	A_NTG_S1
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1.00E-158	-365.8	0	10842	8.43%	8172.2	6.50%	bZIP50(bZIP)	A_NTG_S1
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1.00E-158	-365.7	0	24489	19.04%	20381	16.21%	Sp2(Zf)	A_NTG_S1
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1.00E-158	-364.2	0	5070	3.94%	3336.3	2.65%	TGA1(bZIP)	A_NTG_S1
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1.00E-153	-353.6	0	5178	4.03%	3444.4	2.74%	ARE(NR)	A_NTG_S1
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1.00E-150	-347.6	0	6606	5.14%	4626.3	3.68%	TGA6(bZIP)	A_NTG_S1
"ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer"	RCAGGATGTGGT	1.00E-149	-343.6	0	1970	1.53%	1008.3	0.80%	"ETS:RUNX(ETS,Runt)"	A_NTG_S1
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1.00E-147	-340.2	0	18432	14.33%	14987.4	11.92%	Rfx6(HTH)	A_NTG_S1
SeqBias: GA-repeat	GAGAGAGAGA	1.00E-146	-337.6	0	90438	70.31%	84162.5	66.96%	SeqBias: GA-repeat	A_NTG_S1
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1.00E-144	-333.3	0	6590	5.12%	4647	3.70%	USF1(bHLH)	A_NTG_S1
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1.00E-136	-315	0	6410	4.98%	4542.5	3.61%	TGA10(bZIP)	A_NTG_S1
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1.00E-135	-312.3	0	6009	4.67%	4215.1	3.35%	Rfx5(HTH)	A_NTG_S1
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1.00E-131	-302	0	22117	17.19%	18516	14.73%	AMYB(HTH)	A_NTG_S1
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1.00E-129	-299.1	0	34718	26.99%	30241.1	24.06%	PR(NR)	A_NTG_S1
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1.00E-128	-296.9	0	3508	2.73%	2222.1	1.77%	TGA4(bZIP)	A_NTG_S1
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1.00E-128	-295.9	0	28085	21.83%	24058.4	19.14%	Foxo1(Forkhead)	A_NTG_S1
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1.00E-128	-295.2	0	14957	11.63%	12052.6	9.59%	KLF1(Zf)	A_NTG_S1
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1.00E-126	-291.9	0	3396	2.64%	2143.7	1.71%	Bach2(bZIP)	A_NTG_S1
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1.00E-126	-290.6	0	8557	6.65%	6432.4	5.12%	KLF3(Zf)	A_NTG_S1
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1.00E-125	-289.6	0	14921	11.60%	12043	9.58%	MyoD(bHLH)	A_NTG_S1
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1.00E-125	-288.9	0	20788	16.16%	17363.8	13.81%	BMYB(HTH)	A_NTG_S1
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1.00E-122	-282.8	0	22927	17.82%	19357.8	15.40%	bZIP52(bZIP)	A_NTG_S1
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1.00E-120	-278.1	0	5490	4.27%	3867.2	3.08%	E2FA(E2FDP)	A_NTG_S1
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1.00E-118	-272.8	0	84595	65.77%	78763.6	62.66%	SUT1?	A_NTG_S1
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1.00E-114	-263.4	0	1033	0.80%	453.6	0.36%	TGA3(bZIP)	A_NTG_S1
SeqBias: CG bias	SSSSSSSSSS	1.00E-114	-262.9	0	109125	84.84%	103666.5	82.47%	SeqBias: CG bias	A_NTG_S1
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1.00E-114	-262.6	0	16716	13.00%	13781.8	10.96%	LHX9(Homeobox)	A_NTG_S1
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1.00E-113	-261.9	0	10532	8.19%	8250.9	6.56%	RUNX-AML(Runt)	A_NTG_S1
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1.00E-113	-261	0	30475	23.69%	26494.8	21.08%	Olig2(bHLH)	A_NTG_S1
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1.00E-113	-260.3	0	21652	16.83%	18303.8	14.56%	En1(Homeobox)	A_NTG_S1
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1.00E-112	-259.6	0	13413	10.43%	10818.7	8.61%	TGA9(bZIP)	A_NTG_S1
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1.00E-110	-253.7	0	79707	61.97%	74056.1	58.92%	At5g04390(C2H2)	A_NTG_S1
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1.00E-106	-246.3	0	10638	8.27%	8402.4	6.68%	RUNX(Runt)	A_NTG_S1
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1.00E-106	-245.6	0	47538	36.96%	42782.1	34.04%	Smad3(MAD)	A_NTG_S1
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1.00E-105	-243.1	0	23775	18.48%	20360	16.20%	COUP-TFII(NR)	A_NTG_S1
"Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer"	NNNVCTGWGYAAACASN	1.00E-105	-242.3	0	13644	10.61%	11100.8	8.83%	"Fox:Ebox(Forkhead,bHLH)"	A_NTG_S1
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1.00E-104	-239.9	0	1424	1.11%	738.3	0.59%	TFE3(bHLH)	A_NTG_S1
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1.00E-101	-234.6	0	25342	19.70%	21864.6	17.39%	TCF4(bHLH)	A_NTG_S1
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1.00E-101	-232.9	0	82522	64.16%	77009.7	61.26%	STZ(C2H2)	A_NTG_S1
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1.00E-98	-227.9	0	11973	9.31%	9664.5	7.69%	Lhx2(Homeobox)	A_NTG_S1
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1.00E-98	-226.8	0	27252	21.19%	23695	18.85%	MYB88(MYB)	A_NTG_S1
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1.00E-98	-226.1	0	20620	16.03%	17540.8	13.95%	TF3A(C2H2)	A_NTG_S1
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1.00E-91	-210	0	513	0.40%	175.4	0.14%	Ronin(THAP)	A_NTG_S1
SeqBias: C/A-bias	MMMMMMMMMM	1.00E-90	-207.9	0	128566	99.95%	125335.1	99.71%	SeqBias: C	A_NTG_S1
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1.00E-89	-206.4	0	5771	4.49%	4298.5	3.42%	TGA2(bZIP)	A_NTG_S1
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1.00E-86	-199.4	0	21321	16.58%	18345.1	14.59%	Maz(Zf)	A_NTG_S1
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1.00E-86	-199.3	0	11962	9.30%	9781.4	7.78%	RUNX2(Runt)	A_NTG_S1
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1.00E-86	-198.4	0	3109	2.42%	2094.2	1.67%	Atf4(bZIP)	A_NTG_S1
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1.00E-85	-195.8	0	28023	21.79%	24623.5	19.59%	KLF14(Zf)	A_NTG_S1
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1.00E-84	-194	0	24522	19.06%	21357.1	16.99%	MYB(HTH)	A_NTG_S1
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1.00E-83	-191.8	0	1135	0.88%	588.1	0.47%	ISRE(IRF)	A_NTG_S1
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1.00E-82	-190.8	0	26355	20.49%	23093.7	18.37%	NLP7(RWPRK)	A_NTG_S1
"Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer"	CCATTGTATGCAAAT	1.00E-82	-189.3	0	1690	1.31%	996.3	0.79%	"Oct4:Sox17(POU,Homeobox,HMG)"	A_NTG_S1
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1.00E-82	-189.2	0	3637	2.83%	2547.5	2.03%	Cbf1(bHLH)	A_NTG_S1
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1.00E-79	-182.1	0	8134	6.32%	6440	5.12%	Zic2(Zf)	A_NTG_S1
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1.00E-78	-180.6	0	9638	7.49%	7781.8	6.19%	REF6(Zf)	A_NTG_S1
SeqBias: polyA-repeat	AAAAAAAAAA	1.00E-76	-176.2	0	125826	97.82%	121905	96.98%	SeqBias: polyA-repeat	A_NTG_S1
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1.00E-75	-173.1	0	1568	1.22%	928.6	0.74%	Unknown3	A_NTG_S1
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1.00E-74	-172.5	0	58129	45.19%	53615.6	42.65%	GAGA-repeat	A_NTG_S1
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1.00E-73	-168.5	0	28194	21.92%	24982	19.87%	Nkx6.1(Homeobox)	A_NTG_S1
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1.00E-72	-166	0	3411	2.65%	2417.2	1.92%	VIP1(bZIP)	A_NTG_S1
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1.00E-71	-165.1	0	5931	4.61%	4570.7	3.64%	THRa(NR)	A_NTG_S1
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1.00E-71	-165	0	6387	4.97%	4968.8	3.95%	Dlx3(Homeobox)	A_NTG_S1
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1.00E-71	-164.3	0	6657	5.18%	5207.4	4.14%	Hoxa10(Homeobox)	A_NTG_S1
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1.00E-70	-161.8	0	1231	0.96%	693.4	0.55%	E-box(bHLH)	A_NTG_S1
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1.00E-70	-161.6	0	29222	22.72%	26005.7	20.69%	Twist2(bHLH)	A_NTG_S1
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1.00E-69	-160	0	22433	17.44%	19639.3	15.62%	GLIS3(Zf)	A_NTG_S1
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1.00E-69	-159.5	0	2315	1.80%	1535.9	1.22%	Chop(bZIP)	A_NTG_S1
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1.00E-68	-158.4	0	13583	10.56%	11459.1	9.12%	Zic(Zf)	A_NTG_S1
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1.00E-68	-158.3	0	1075	0.84%	584.9	0.47%	Bach1(bZIP)	A_NTG_S1
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1.00E-68	-157.2	0	4409	3.43%	3283.1	2.61%	Zfp281(Zf)	A_NTG_S1
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1.00E-66	-152.2	0	1173	0.91%	664	0.53%	NF-E2(bZIP)	A_NTG_S1
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1.00E-65	-151.5	0	12642	9.83%	10638.7	8.46%	Myf5(bHLH)	A_NTG_S1
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1.00E-63	-147.2	0	3171	2.47%	2266	1.80%	CRE(bZIP)	A_NTG_S1
SeqBias: GCW-triplet	GCWGCWGCWGCW	1.00E-63	-147.2	0	128616	99.99%	125522	99.86%	SeqBias: GCW-triplet	A_NTG_S1
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1.00E-63	-145.1	0	8690	6.76%	7092.1	5.64%	CEBP:AP1(bZIP)	A_NTG_S1
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1.00E-62	-144.9	0	16847	13.10%	14545.3	11.57%	MYB77(MYB)	A_NTG_S1
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1.00E-62	-143.5	0	16623	12.92%	14347.6	11.41%	DLX2(Homeobox)	A_NTG_S1
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1.00E-62	-142.9	0	4043	3.14%	3014.6	2.40%	AT2G31460(REMB3)	A_NTG_S1
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1.00E-61	-142.3	0	53880	41.89%	49791.8	39.61%	Nanog(Homeobox)	A_NTG_S1
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1.00E-61	-141.9	0	18200	14.15%	15820.1	12.59%	Lhx3(Homeobox)	A_NTG_S1
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1.00E-61	-141.9	0	13118	10.20%	11128	8.85%	SPCH(bHLH)	A_NTG_S1
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1.00E-60	-139.6	0	22322	17.35%	19684.9	15.66%	ZNF416(Zf)	A_NTG_S1
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1.00E-59	-137.1	0	7902	6.14%	6423.9	5.11%	HY5(bZIP)	A_NTG_S1
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1.00E-59	-136.7	0	10590	8.23%	8850.8	7.04%	Stat3+il21(Stat)	A_NTG_S1
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1.00E-58	-134.9	0	7618	5.92%	6179.6	4.92%	CEBP(bZIP)	A_NTG_S1
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1.00E-57	-133.3	0	978	0.76%	545.2	0.43%	Nrf2(bZIP)	A_NTG_S1
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1.00E-57	-131.8	0	16639	12.94%	14440.9	11.49%	MYB81(MYB)	A_NTG_S1
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1.00E-57	-131.5	0	22011	17.11%	19455.3	15.48%	MYB73(MYB)	A_NTG_S1
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1.00E-56	-129.5	0	2338	1.82%	1619.1	1.29%	bZIP69(bZIP)	A_NTG_S1
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1.00E-56	-129.1	0	7304	5.68%	5925.2	4.71%	CLOCK(bHLH)	A_NTG_S1
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1.00E-55	-128.4	0	43039	33.46%	39477	31.41%	Trl(Zf)	A_NTG_S1
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1.00E-55	-127.7	0	31993	24.87%	28920.4	23.01%	ERF15(AP2EREBP)	A_NTG_S1
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1.00E-55	-126.9	0	1669	1.30%	1084	0.86%	BIM3(bHLH)	A_NTG_S1
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1.00E-54	-125.9	0	11940	9.28%	10143.2	8.07%	Lhx1(Homeobox)	A_NTG_S1
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1.00E-54	-125.3	0	4900	3.81%	3814.8	3.03%	WUS1(Homeobox)	A_NTG_S1
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1.00E-53	-123.3	0	24711	19.21%	22061.2	17.55%	MYB101(MYB)	A_NTG_S1
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1.00E-53	-123.3	0	2469	1.92%	1742	1.39%	PIF7(bHLH)	A_NTG_S1
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1.00E-53	-123.3	0	5412	4.21%	4271.3	3.40%	E2F4(E2F)	A_NTG_S1
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1.00E-52	-121.4	0	32218	25.05%	29193.2	23.22%	Initiator	A_NTG_S1
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1.00E-52	-121	0	1517	1.18%	975.9	0.78%	IRF:BATF(IRF:bZIP)	A_NTG_S1
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1.00E-51	-118.9	0	11394	8.86%	9684.3	7.70%	FOXK1(Forkhead)	A_NTG_S1
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1.00E-51	-118.5	0	8079	6.28%	6672	5.31%	Foxo3(Forkhead)	A_NTG_S1
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1.00E-51	-118.4	0	60034	46.67%	56025.5	44.57%	AR-halfsite(NR)	A_NTG_S1
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1.00E-51	-117.8	0	42473	33.02%	39042.7	31.06%	Tgif1(Homeobox)	A_NTG_S1
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1.00E-50	-116.5	0	7830	6.09%	6457.1	5.14%	DLX5(Homeobox)	A_NTG_S1
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1.00E-49	-113.9	0	12866	10.00%	11069.1	8.81%	STAT4(Stat)	A_NTG_S1
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1.00E-47	-110	0	4134	3.21%	3202	2.55%	E-box	A_NTG_S1
SeqBias: G/A bias	RRRRRRRRRR	1.00E-46	-106.2	0	128583	99.97%	125490.7	99.83%	SeqBias: G	A_NTG_S1
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1.00E-46	-106.1	0	5964	4.64%	4833.4	3.85%	IRF4(IRF)	A_NTG_S1
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1.00E-45	-103.7	0	10189	7.92%	8672	6.90%	AtHB32(ZFHD)	A_NTG_S1
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1.00E-44	-103.2	0	14102	10.96%	12286.9	9.77%	PIF5ox(bHLH)	A_NTG_S1
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1.00E-44	-102.8	0	18871	14.67%	16740.3	13.32%	MyoG(bHLH)	A_NTG_S1
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1.00E-44	-101.9	0	8610	6.69%	7241.8	5.76%	SGR5(C2H2)	A_NTG_S1
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1.00E-42	-98.83	0	2968	2.31%	2232.8	1.78%	AREB3(bZIP)	A_NTG_S1
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1.00E-42	-98.37	0	7262	5.65%	6037.2	4.80%	FOXK2(Forkhead)	A_NTG_S1
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1.00E-42	-98.2	0	2982	2.32%	2246	1.79%	bHLH74(bHLH)	A_NTG_S1
"ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer"	AGGAARCAGCTG	1.00E-42	-97.98	0	1594	1.24%	1083.4	0.86%	"ETS:E-box(ETS,bHLH)"	A_NTG_S1
Tal1	CATCTG	1.00E-42	-97.49	0	21102	16.41%	18884.7	15.02%	Tal1	A_NTG_S1
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1.00E-42	-96.78	0	12657	9.84%	10992.8	8.75%	ATHB33(ZFHD)	A_NTG_S1
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1.00E-41	-95.88	0	14911	11.59%	13093.5	10.42%	RUNX1(Runt)	A_NTG_S1
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1.00E-41	-94.93	0	13003	10.11%	11326.4	9.01%	FEA4(bZIP)	A_NTG_S1
"OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer"	ATGCATWATGCATRW	1.00E-40	-93.42	0	6028	4.69%	4950.8	3.94%	"OCT:OCT-short(POU,Homeobox)"	A_NTG_S1
GFY(?)/Promoter/Homer	ACTACAATTCCC	1.00E-40	-93.06	0	989	0.77%	612.3	0.49%	GFY(?)	A_NTG_S1
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1.00E-40	-92.88	0	3680	2.86%	2869.7	2.28%	Pbx3(Homeobox)	A_NTG_S1
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1.00E-40	-92.55	0	2648	2.06%	1978.8	1.57%	bZIP28(bZIP)	A_NTG_S1
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1.00E-40	-92.46	0	3053	2.37%	2327	1.85%	bZIP53(bZIP)	A_NTG_S1
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1.00E-39	-91.77	0	17648	13.72%	15686.1	12.48%	At1g75490(AP2EREBP)	A_NTG_S1
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1.00E-39	-90.1	0	10083	7.84%	8661.4	6.89%	LBD23(LOBAS2)	A_NTG_S1
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1.00E-38	-87.87	0	22819	17.74%	20596.9	16.39%	Isl1(Homeobox)	A_NTG_S1
"NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer"	WNTGTTTRYTTTGGCA	1.00E-37	-87.32	0	766	0.60%	451.6	0.36%	"NF1:FOXA1(CTF,Forkhead)"	A_NTG_S1
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1.00E-37	-87.01	0	8093	6.29%	6856.9	5.46%	AGL63(MADS)	A_NTG_S1
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1.00E-36	-84.92	0	2128	1.65%	1559	1.24%	GBF6(bZIP)	A_NTG_S1
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1.00E-36	-84.52	0	24561	19.10%	22281	17.73%	AT5G23930(mTERF)	A_NTG_S1
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1.00E-36	-83.92	0	9083	7.06%	7782.9	6.19%	Foxf1(Forkhead)	A_NTG_S1
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1.00E-36	-83.8	0	15463	12.02%	13706	10.90%	EBF1(EBF)	A_NTG_S1
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1.00E-36	-83.51	0	3177	2.47%	2465.3	1.96%	GBF5(bZIP)	A_NTG_S1
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1.00E-36	-82.9	0	6740	5.24%	5648.5	4.49%	Klf9(Zf)	A_NTG_S1
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1.00E-35	-82	0	13883	10.79%	12244.7	9.74%	MafA(bZIP)	A_NTG_S1
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1.00E-35	-81.62	0	2145	1.67%	1583.2	1.26%	ABF2(bZIP)	A_NTG_S1
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1.00E-35	-81.32	0	4847	3.77%	3950.3	3.14%	FOXP1(Forkhead)	A_NTG_S1
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1.00E-35	-81.02	0	5785	4.50%	4794.3	3.81%	c-Myc(bHLH)	A_NTG_S1
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1.00E-34	-78.33	0	3423	2.66%	2700.4	2.15%	bZIP48(bZIP)	A_NTG_S1
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1.00E-33	-76.08	0	8446	6.57%	7248.3	5.77%	FoxL2(Forkhead)	A_NTG_S1
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1.00E-33	-75.99	0	3294	2.56%	2596.9	2.07%	bHLH34(bHLH)	A_NTG_S1
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1.00E-32	-74.6	0	20006	15.55%	18067.7	14.37%	Rbpj1(?)	A_NTG_S1
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1.00E-32	-74.51	0	3318	2.58%	2623.5	2.09%	bZIP68(bZIP)	A_NTG_S1
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1.00E-32	-73.89	0	9164	7.12%	7924.6	6.30%	Foxa2(Forkhead)	A_NTG_S1
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1.00E-32	-73.87	0	3449	2.68%	2741.3	2.18%	Pknox1(Homeobox)	A_NTG_S1
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1.00E-31	-73.54	0	1342	1.04%	933.9	0.74%	PBX1(Homeobox)	A_NTG_S1
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1.00E-31	-73.38	0	3796	2.95%	3050.9	2.43%	SOC1(MADS)	A_NTG_S1
"Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer"	ATGAATATTC	1.00E-30	-70.27	0	876	0.68%	564.2	0.45%	"Brn2(POU,Homeobox)"	A_NTG_S1
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1.00E-30	-69.71	0	7201	5.60%	6147.1	4.89%	Stat3(Stat)	A_NTG_S1
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1.00E-30	-69.67	0	2838	2.21%	2221.2	1.77%	Unknown1(NR	A_NTG_S1
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1.00E-30	-69.45	0	2679	2.08%	2083.3	1.66%	MYB98(MYB)	A_NTG_S1
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1.00E-30	-69.32	0	13092	10.18%	11611.5	9.24%	MYB65(MYB)	A_NTG_S1
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1.00E-30	-69.28	0	3391	2.64%	2709.6	2.16%	Foxa3(Forkhead)	A_NTG_S1
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1.00E-29	-68.3	0	1329	1.03%	935.7	0.74%	BIM1(bHLH)	A_NTG_S1
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1.00E-29	-68.22	0	15968	12.41%	14320.3	11.39%	MYB70(MYB)	A_NTG_S1
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1.00E-29	-67.56	0	12678	9.86%	11239	8.94%	RIN(MADS)	A_NTG_S1
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1.00E-29	-67.28	0	5571	4.33%	4675.4	3.72%	Klf4(Zf)	A_NTG_S1
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1.00E-28	-66.45	0	8084	6.28%	6980.8	5.55%	ATHB23(ZFHD)	A_NTG_S1
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1.00E-28	-66.26	0	81817	63.61%	78053	62.09%	bZIP18(bZIP)	A_NTG_S1
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1.00E-28	-65.52	0	2654	2.06%	2076.3	1.65%	bZIP16(bZIP)	A_NTG_S1
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1.00E-28	-64.49	0	13164	10.23%	11721.2	9.32%	FOXA1(Forkhead)	A_NTG_S1
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1.00E-27	-64.15	0	43691	33.97%	40879.7	32.52%	HuR(?)	A_NTG_S1
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1.00E-27	-64.15	0	25904	20.14%	23788.7	18.93%	Smad4(MAD)	A_NTG_S1
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1.00E-27	-63.81	0	1428	1.11%	1029.4	0.82%	AGL15(MADS)	A_NTG_S1
"LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer"	RGGTTACTANAGGTCA	1.00E-27	-63.34	0	637	0.50%	390.3	0.31%	"LXRE(NR),DR4"	A_NTG_S1
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1.00E-27	-62.82	0	5240	4.07%	4400.5	3.50%	E-box	A_NTG_S1
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1.00E-27	-62.62	0	13390	10.41%	11950.3	9.51%	ZNF467(Zf)	A_NTG_S1
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1.00E-27	-62.42	0	182	0.14%	70.6	0.06%	GFX(?)	A_NTG_S1
SeqBias: A/T bias	WWWWWWWWWW	1.00E-26	-61.47	0	101389	78.83%	97516.4	77.58%	SeqBias: A	A_NTG_S1
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1.00E-25	-59.81	0	8051	6.26%	6997.8	5.57%	ATHB13(Homeobox)	A_NTG_S1
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1.00E-25	-59.41	0	1578	1.23%	1168.1	0.93%	Unknown3	A_NTG_S1
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1.00E-25	-58.75	0	3818	2.97%	3138	2.50%	bHLHE40(bHLH)	A_NTG_S1
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1.00E-25	-58.57	0	19805	15.40%	18049.3	14.36%	KLF5(Zf)	A_NTG_S1
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1.00E-25	-58.56	0	4185	3.25%	3469.5	2.76%	DREB19(AP2EREBP)	A_NTG_S1
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1.00E-25	-58.38	0	6451	5.02%	5533.4	4.40%	STAT6(Stat)	A_NTG_S1
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1.00E-25	-58.38	0	5139	4.00%	4335	3.45%	bZIP3(bZIP)	A_NTG_S1
"GFY-Staf(?,Zf)/Promoter/Homer"	RACTACAATTCCCAGAAKGC	1.00E-25	-58	0	822	0.64%	545.7	0.43%	"GFY-Staf(?,Zf)"	A_NTG_S1
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1.00E-24	-56.39	0	2201	1.71%	1715.1	1.36%	MYB3R1(MYB)	A_NTG_S1
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1.00E-24	-56.34	0	7166	5.57%	6205.3	4.94%	ATHB34(ZFHD)	A_NTG_S1
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1.00E-24	-55.71	0	10492	8.16%	9299.2	7.40%	FOXA1(Forkhead)	A_NTG_S1
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1.00E-24	-55.26	0	3246	2.52%	2643.1	2.10%	M1BP(Zf)	A_NTG_S1
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1.00E-23	-54.4	0	953	0.74%	659.1	0.52%	NFE2L2(bZIP)	A_NTG_S1
"Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer"	AGGTGHCAGACA	1.00E-23	-53.94	0	2828	2.20%	2278	1.81%	"Tbox:Smad(T-box,MAD)"	A_NTG_S1
"OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer"	ATGAATATTCATGAG	1.00E-23	-53.82	0	144	0.11%	53.2	0.04%	"OCT:OCT(POU,Homeobox)"	A_NTG_S1
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1.00E-23	-53.29	0	9281	7.22%	8190.7	6.52%	WT1(Zf)	A_NTG_S1
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1.00E-23	-53	0	7052	5.48%	6124.3	4.87%	Hand2(bHLH)	A_NTG_S1
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1.00E-23	-52.96	0	2534	1.97%	2021.8	1.61%	MYB119(MYB)	A_NTG_S1
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1.00E-22	-52.92	0	16166	12.57%	14664.8	11.67%	KLF6(Zf)	A_NTG_S1
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1.00E-22	-51.96	0	13397	10.42%	12061	9.60%	KAN2(G2like)	A_NTG_S1
"Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer"	WATGCAAATGAG	1.00E-22	-51.72	0	4546	3.53%	3834.4	3.05%	"Oct6(POU,Homeobox)"	A_NTG_S1
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1.00E-22	-51.57	0	9769	7.59%	8660.8	6.89%	TBP3(MYBrelated)	A_NTG_S1
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1.00E-22	-51.22	0	13984	10.87%	12621.5	10.04%	DLX1(Homeobox)	A_NTG_S1
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1.00E-22	-50.83	0	3051	2.37%	2490.9	1.98%	Zfp809(Zf)	A_NTG_S1
"OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer"	ATTTGCATAACAATG	1.00E-22	-50.82	0	1775	1.38%	1365.4	1.09%	"OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)"	A_NTG_S1
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1.00E-22	-50.8	0	4148	3.22%	3478.1	2.77%	At5g08750(C3H)	A_NTG_S1
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1.00E-21	-50.25	0	4182	3.25%	3512	2.79%	AtIDD11(C2H2)	A_NTG_S1
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1.00E-21	-49.82	0	3899	3.03%	3258.1	2.59%	DEL2(E2FDP)	A_NTG_S1
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1.00E-21	-49.07	0	40090	31.17%	37634.7	29.94%	PHA-4(Forkhead)	A_NTG_S1
"OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer"	ATGAATWATTCATGA	1.00E-21	-48.5	0	210	0.16%	98.9	0.08%	"OCT:OCT(POU,Homeobox,IR1)"	A_NTG_S1
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1.00E-20	-48.15	0	2542	1.98%	2049.8	1.63%	MYB118(MYB)	A_NTG_S1
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1.00E-20	-47.94	0	20721	16.11%	19050.9	15.16%	JGL(C2H2)	A_NTG_S1
"Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer"	TATGCWAATBAV	1.00E-20	-47.45	0	3413	2.65%	2832.9	2.25%	"Brn1(POU,Homeobox)"	A_NTG_S1
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1.00E-20	-46.62	0	10708	8.32%	9585.2	7.63%	BIM2(bHLH)	A_NTG_S1
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1.00E-20	-46.61	0	12768	9.93%	11524	9.17%	Hoxd10(Homeobox)	A_NTG_S1
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1.00E-20	-46.09	0	12829	9.97%	11586.4	9.22%	ZNF189(Zf)	A_NTG_S1
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1.00E-19	-45.32	0	7743	6.02%	6825.1	5.43%	ZBTB18(Zf)	A_NTG_S1
"Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer"	GATTTGCATA	1.00E-19	-45.13	0	3224	2.51%	2674.7	2.13%	"Oct11(POU,Homeobox)"	A_NTG_S1
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1.00E-19	-44.93	0	4087	3.18%	3457.4	2.75%	ABI5(bZIP)	A_NTG_S1
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1.00E-19	-44.79	0	3304	2.57%	2748.9	2.19%	Tbx20(T-box)	A_NTG_S1
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1.00E-19	-44.78	0	9612	7.47%	8575.9	6.82%	Pdx1(Homeobox)	A_NTG_S1
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1.00E-18	-43.06	0	8133	6.32%	7208.2	5.73%	Gfi1b(Zf)	A_NTG_S1
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1.00E-18	-42.96	0	12085	9.40%	10918.9	8.69%	TAGL1(MADS)	A_NTG_S1
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1.00E-18	-42.65	0	26025	20.23%	24196.2	19.25%	Ascl1(bHLH)	A_NTG_S1
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1.00E-18	-42.34	0	6662	5.18%	5845.6	4.65%	ATHB24(ZFHD)	A_NTG_S1
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1.00E-18	-41.75	0	1301	1.01%	987.6	0.79%	MYB3R4(MYB)	A_NTG_S1
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1.00E-18	-41.54	0	9471	7.36%	8474.1	6.74%	n-Myc(bHLH)	A_NTG_S1
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1.00E-17	-41.27	0	12614	9.81%	11437	9.10%	EBF2(EBF)	A_NTG_S1
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1.00E-17	-41.26	0	19312	15.01%	17796.3	14.16%	MYB33(MYB)	A_NTG_S1
"FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer"	AGGTCANTGACCTB	1.00E-17	-41.02	0	5045	3.92%	4360.8	3.47%	"FXR(NR),IR1"	A_NTG_S1
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1.00E-17	-40.8	0	25427	19.77%	23651.3	18.82%	Smad2(MAD)	A_NTG_S1
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1.00E-17	-40.66	0	1672	1.30%	1313.6	1.05%	ZNF675(Zf)	A_NTG_S1
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1.00E-17	-40.35	0	31622	24.58%	29612	23.56%	Hoxa9(Homeobox)	A_NTG_S1
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1.00E-17	-40.3	0	13036	10.13%	11846.9	9.42%	AT1G69570(C2C2dof)	A_NTG_S1
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1.00E-17	-39.89	0	1957	1.52%	1567	1.25%	O2(bZIP)	A_NTG_S1
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1.00E-17	-39.75	0	10602	8.24%	9555.5	7.60%	LIN-39(Homeobox)	A_NTG_S1
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1.00E-17	-39.58	0	848	0.66%	609.7	0.49%	AGL16(MADS)	A_NTG_S1
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1.00E-17	-39.47	0	16523	12.85%	15164.9	12.06%	PIF4(bHLH)	A_NTG_S1
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1.00E-17	-39.36	0	32137	24.99%	30125.9	23.97%	Nkx3.1(Homeobox)	A_NTG_S1
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1.00E-16	-38.78	0	17459	13.57%	16064.7	12.78%	At5g18450(AP2EREBP)	A_NTG_S1
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1.00E-15	-36.63	0	2334	1.81%	1918.9	1.53%	Pho4(bHLH)	A_NTG_S1
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1.00E-15	-36.58	0	11425	8.88%	10366.1	8.25%	FOXM1(Forkhead)	A_NTG_S1
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1.00E-15	-36.06	0	499	0.39%	331.4	0.26%	AGL25(MADS)	A_NTG_S1
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1.00E-15	-35.43	0	16256	12.64%	14964.4	11.90%	AtGRF6(GRF)	A_NTG_S1
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1.00E-15	-35.43	0	1038	0.81%	782.9	0.62%	AGL6(MADS)	A_NTG_S1
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1.00E-15	-35.42	0	20045	15.58%	18580.8	14.78%	CDF3(C2C2dof)	A_NTG_S1
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1.00E-15	-35.05	0	19355	15.05%	17926.7	14.26%	AT1G28160(AP2EREBP)	A_NTG_S1
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1.00E-14	-34.52	0	2858	2.22%	2402.1	1.91%	EBF(EBF)	A_NTG_S1
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1.00E-14	-34.32	0	885	0.69%	655.3	0.52%	AARE(HLH)	A_NTG_S1
"NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer"	SARTGGAAAAWRTGAGTCAB	1.00E-14	-33.95	0	1938	1.51%	1577.5	1.26%	"NFAT:AP1(RHD,bZIP)"	A_NTG_S1
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1.00E-14	-33.86	0	2121	1.65%	1741.1	1.39%	Dorsal(RHD)	A_NTG_S1
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1.00E-14	-33.69	0	6942	5.40%	6181.9	4.92%	ATHB5(HB)	A_NTG_S1
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1.00E-14	-33.18	0	1077	0.84%	823.8	0.66%	ZSCAN22(Zf)	A_NTG_S1
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1.00E-14	-33.11	0	7802	6.07%	6992.9	5.56%	GATA4(C2C2gata)	A_NTG_S1
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1.00E-14	-32.72	0	710	0.55%	512.7	0.41%	NFkB-p65-Rel(RHD)	A_NTG_S1
"ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer"	VAGGTCACNSTGACC	1.00E-14	-32.63	0	3669	2.85%	3154.2	2.51%	"ERE(NR),IR3"	A_NTG_S1
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1.00E-14	-32.63	0	4850	3.77%	4243.1	3.38%	ZNF322(Zf)	A_NTG_S1
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1.00E-14	-32.25	0	7330	5.70%	6558.5	5.22%	PRDM1(Zf)	A_NTG_S1
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1.00E-14	-32.25	0	25113	19.52%	23490.8	18.69%	Meis1(Homeobox)	A_NTG_S1
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1.00E-13	-32.1	0	5987	4.65%	5304.5	4.22%	CHR(?)	A_NTG_S1
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1.00E-13	-31.55	0	4996	3.88%	4387.2	3.49%	LMI1(HB)	A_NTG_S1
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1.00E-13	-31.09	0	6706	5.21%	5985.8	4.76%	STAT6(Stat)	A_NTG_S1
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1.00E-13	-30.72	0	2023	1.57%	1670	1.33%	RRTF1(AP2EREBP)	A_NTG_S1
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1.00E-13	-30.16	0	4213	3.28%	3673.8	2.92%	IDD7(C2H2)	A_NTG_S1
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1.00E-13	-30.05	0	3362	2.61%	2890.9	2.30%	DREB2(AP2EREBP)	A_NTG_S1
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1.00E-13	-29.95	0	11047	8.59%	10088.6	8.03%	VND6(NAC)	A_NTG_S1
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1.00E-12	-29.19	0	3014	2.34%	2577.1	2.05%	At5g66730(C2H2)	A_NTG_S1
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1.00E-12	-28.9	0	1978	1.54%	1638.4	1.30%	Twist(bHLH)	A_NTG_S1
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1.00E-12	-28.69	0	25485	19.81%	23912.8	19.02%	AT5G02460(C2C2dof)	A_NTG_S1
"bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer"	NAGTTTCABTHTGACTNW	1.00E-12	-28.58	0	5377	4.18%	4767.2	3.79%	"bZIP:IRF(bZIP,IRF)"	A_NTG_S1
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1.00E-12	-28.28	0	6622	5.15%	5935	4.72%	ZNF7(Zf)	A_NTG_S1
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1.00E-12	-28.19	0	4397	3.42%	3859.9	3.07%	STAT5(Stat)	A_NTG_S1
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1.00E-12	-27.93	0	4538	3.53%	3993	3.18%	SVP(MADS)	A_NTG_S1
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1.00E-11	-27.53	0	2744	2.13%	2341.7	1.86%	ATHB20(Homeobox)	A_NTG_S1
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1.00E-11	-27.35	0	2384	1.85%	2014.9	1.60%	Tcfcp2l1(CP2)	A_NTG_S1
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1.00E-11	-27.05	0	197	0.15%	112	0.09%	bZIP44(bZIP)	A_NTG_S1
"Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer"	GTCATGCHTGRCTGS	1.00E-11	-26.89	0	5160	4.01%	4580.6	3.64%	"Pax8(Paired,Homeobox)"	A_NTG_S1
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1.00E-11	-26.72	0	10059	7.82%	9193.6	7.31%	ATHB25(ZFHD)	A_NTG_S1
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1.00E-10	-24.87	0	6024	4.68%	5408.7	4.30%	NFkB-p65(RHD)	A_NTG_S1
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1.00E-10	-24.26	0	328	0.26%	219	0.17%	AGL13(MADS)	A_NTG_S1
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1.00E-10	-23.94	0	2423	1.88%	2071.8	1.65%	DMRT1(DM)	A_NTG_S1
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1.00E-10	-23.77	0	6398	4.97%	5771.3	4.59%	Foxh1(Forkhead)	A_NTG_S1
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1.00E-10	-23.71	0	4361	3.39%	3864.6	3.07%	Hoxc9(Homeobox)	A_NTG_S1
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1.00E-10	-23.69	0	2633	2.05%	2265.1	1.80%	Pit1+1bp(Homeobox)	A_NTG_S1
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1.00E-10	-23.4	0	3564	2.77%	3126.5	2.49%	AT1G12630(AP2EREBP)	A_NTG_S1
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1.00E-10	-23.13	0	26487	20.59%	24988.2	19.88%	Hoxa13(Homeobox)	A_NTG_S1
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1.00E-09	-22.94	0	5717	4.44%	5140.7	4.09%	NTM1(NAC)	A_NTG_S1
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1.00E-09	-22.94	0	7813	6.07%	7115	5.66%	PBX2(Homeobox)	A_NTG_S1
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1.00E-09	-22.68	0	1507	1.17%	1248	0.99%	GT3a(Trihelix)	A_NTG_S1
"Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer"	GTRGGTCASTGGGTCA	1.00E-09	-22.57	0	1866	1.45%	1572.3	1.25%	"Reverb(NR),DR2"	A_NTG_S1
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1.00E-09	-22.53	0	13601	10.57%	12624.8	10.04%	SOL1(CPP)	A_NTG_S1
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1.00E-09	-22.18	0	12299	9.56%	11388	9.06%	bHLH80(bHLH)	A_NTG_S1
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1.00E-09	-21.86	0	8577	6.67%	7852.8	6.25%	Npas4(bHLH)	A_NTG_S1
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1.00E-09	-21.83	0	14110	10.97%	13123	10.44%	TCX2(CPP)	A_NTG_S1
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1.00E-09	-21.8	0	19199	14.93%	18000.3	14.32%	Hoxd12(Homeobox)	A_NTG_S1
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1.00E-09	-21.31	0	3237	2.52%	2840.6	2.26%	At4g36780(BZR)	A_NTG_S1
"GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer"	NNNNNBAGATAWYATCTVHN	1.00E-09	-21.3	0	1199	0.93%	978.1	0.78%	"GATA(Zf),IR3"	A_NTG_S1
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1.00E-09	-21.25	0	8196	6.37%	7499.1	5.97%	MYB56(MYB)	A_NTG_S1
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1.00E-09	-21.2	0	23801	18.50%	22440	17.85%	ANAC038(NAC)	A_NTG_S1
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1.00E-09	-21.16	0	7120	5.54%	6482.2	5.16%	HAT2(Homeobox)	A_NTG_S1
"Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer"	ATTTGCATAW	1.00E-09	-21.13	0	4514	3.51%	4031.7	3.21%	"Oct4(POU,Homeobox)"	A_NTG_S1
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1.00E-09	-21.01	0	2546	1.98%	2204.1	1.75%	Phox2a(Homeobox)	A_NTG_S1
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1.00E-09	-20.8	0	20664	16.07%	19428.1	15.46%	ANAC046(NAC)	A_NTG_S1
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1.00E-09	-20.78	0	5657	4.40%	5107.5	4.06%	ATHB6(Homeobox)	A_NTG_S1
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1.00E-08	-20.68	0	17855	13.88%	16731.1	13.31%	COUP-TFII(NR)	A_NTG_S1
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1.00E-08	-20.47	0	9046	7.03%	8316.5	6.62%	Max(bHLH)	A_NTG_S1
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1.00E-08	-20.3	0	7226	5.62%	6593.4	5.25%	CEJ1(AP2EREBP)	A_NTG_S1
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1.00E-08	-20.28	0	4710	3.66%	4223.2	3.36%	At1g36060(AP2EREBP)	A_NTG_S1
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1.00E-08	-20.21	0	6698	5.21%	6095	4.85%	E2F6(E2F)	A_NTG_S1
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1.00E-08	-19.98	0	19095	14.85%	17936.4	14.27%	ZFX(Zf)	A_NTG_S1
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1.00E-08	-19.35	0	8072	6.28%	7408	5.89%	ANAC071(NAC)	A_NTG_S1
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1.00E-08	-19.34	0	2137	1.66%	1840.9	1.46%	Hoxb4(Homeobox)	A_NTG_S1
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1.00E-08	-19.03	0	1124	0.87%	922.2	0.73%	HAT1(Homeobox)	A_NTG_S1
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1.00E-08	-19.02	0	5398	4.20%	4883.9	3.89%	AT3G10030(Trihelix)	A_NTG_S1
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1.00E-08	-18.97	0	8234	6.40%	7566.5	6.02%	DEAR2(AP2EREBP)	A_NTG_S1
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1.00E-08	-18.78	0	17079	13.28%	16023.4	12.75%	ERF105(AP2EREBP)	A_NTG_S1
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1.00E-08	-18.67	0	27008	21.00%	25592.6	20.36%	Nkx2.2(Homeobox)	A_NTG_S1
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1.00E-08	-18.6	0	2470	1.92%	2152.9	1.71%	DDF1(AP2EREBP)	A_NTG_S1
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1.00E-08	-18.58	0	1264	0.98%	1050.1	0.84%	At2g44940(AP2EREBP)	A_NTG_S1
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1.00E-08	-18.53	0	11843	9.21%	11011.6	8.76%	Replumless(BLH)	A_NTG_S1
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1.00E-07	-18.23	0	5451	4.24%	4942.7	3.93%	AT2G15740(C2H2)	A_NTG_S1
"RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer"	GGGRAARRGRMCAGMTG	1.00E-07	-18.21	0	4924	3.83%	4446.7	3.54%	"RBPJ:Ebox(?,bHLH)"	A_NTG_S1
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1.00E-07	-18.15	0	3899	3.03%	3485.8	2.77%	CAMTA1(CAMTA)	A_NTG_S1
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1.00E-07	-18.05	0	9957	7.74%	9219.8	7.33%	ABF1(bZIP)	A_NTG_S1
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1.00E-07	-17.81	0	1725	1.34%	1473.7	1.17%	bHLH10(bHLH)	A_NTG_S1
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1.00E-07	-17.75	0	16363	12.72%	15356.3	12.22%	EAR2(NR)	A_NTG_S1
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1.00E-07	-17.43	0	9145	7.11%	8455.4	6.73%	VND2(NAC)	A_NTG_S1
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1.00E-07	-17.38	0	13618	10.59%	12730.9	10.13%	GRF9(GRF)	A_NTG_S1
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1.00E-07	-17.24	0	4402	3.42%	3966.2	3.16%	ANAC013(NAC)	A_NTG_S1
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1.00E-07	-16.98	0	4252	3.31%	3828.5	3.05%	Prop1(Homeobox)	A_NTG_S1
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1.00E-07	-16.87	0	10664	8.29%	9913.4	7.89%	KANADI1(Myb)	A_NTG_S1
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1.00E-07	-16.79	0	418	0.32%	311.5	0.25%	ZBTB33(Zf)	A_NTG_S1
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1.00E-07	-16.67	0	3867	3.01%	3470.6	2.76%	AT1G76870(Trihelix)	A_NTG_S1
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1.00E-07	-16.62	0	528	0.41%	406.2	0.32%	MYB3R5(MYB)	A_NTG_S1
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1.00E-07	-16.49	0	1145	0.89%	954.4	0.76%	ATHB18(Homeobox)	A_NTG_S1
"GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer"	CRGCTGBNGNSNNSAGATAA	1.00E-07	-16.4	0	1351	1.05%	1141.4	0.91%	"GATA:SCL(Zf,bHLH)"	A_NTG_S1
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1.00E-07	-16.23	0	3925	3.05%	3529.4	2.81%	Rap210(AP2EREBP)	A_NTG_S1
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1.00E-06	-16.03	0	18948	14.73%	17879.9	14.22%	Unknown2	A_NTG_S1
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1.00E-06	-15.78	0	11979	9.31%	11190.9	8.90%	ZNF341(Zf)	A_NTG_S1
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1.00E-06	-15.74	0	1557	1.21%	1333.9	1.06%	Srebp2(bHLH)	A_NTG_S1
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1.00E-06	-15.29	0	1665	1.29%	1435.4	1.14%	AT3G60490(AP2EREBP)	A_NTG_S1
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1.00E-06	-15.2	0	8326	6.47%	7710.6	6.13%	ANAC016(NAC)	A_NTG_S1
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1.00E-06	-15.1	0	3143	2.44%	2808.7	2.23%	Brachyury(T-box)	A_NTG_S1
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1.00E-06	-14.99	0	9133	7.10%	8483.2	6.75%	SMB(NAC)	A_NTG_S1
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1.00E-06	-14.96	0	7462	5.80%	6891.4	5.48%	NAP(NAC)	A_NTG_S1
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1.00E-06	-14.89	0	1712	1.33%	1481.7	1.18%	bHLH28(bHLH)	A_NTG_S1
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1.00E-06	-14.84	0	5100	3.97%	4652.3	3.70%	At4g16750(AP2EREBP)	A_NTG_S1
"PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer"	GTCACGCTCSCTGM	1.00E-06	-14.74	0	1423	1.11%	1217.7	0.97%	"PAX5(Paired,Homeobox),condensed"	A_NTG_S1
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1.00E-06	-14.73	0	24560	19.09%	23326	18.56%	SPL9(SBP)	A_NTG_S1
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1.00E-06	-14.57	0	13948	10.84%	13102.4	10.42%	ERF13(AP2EREBP)	A_NTG_S1
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1.00E-06	-14.45	0	2796	2.17%	2490.6	1.98%	MafF(bZIP)	A_NTG_S1
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1.00E-06	-14.19	0	18068	14.05%	17074.5	13.58%	AT5G25475(ABI3VP1)	A_NTG_S1
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1.00E-06	-14.19	0	1564	1.22%	1350.9	1.07%	TINY(AP2EREBP)	A_NTG_S1
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1.00E-06	-14.15	0	1847	1.44%	1611	1.28%	TOD6?	A_NTG_S1
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1.00E-06	-13.94	0	2599	2.02%	2311.5	1.84%	EKLF(Zf)	A_NTG_S1
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1.00E-06	-13.88	0	26050	20.25%	24790.3	19.72%	Hoxd11(Homeobox)	A_NTG_S1
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1.00E-05	-13.49	0	4465	3.47%	4069.1	3.24%	GBF3(bZIP)	A_NTG_S1
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1.00E-05	-13.42	0	5475	4.26%	5026.2	4.00%	MYB105(MYB)	A_NTG_S1
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1.00E-05	-13.4	0	1399	1.09%	1204.3	0.96%	GATA6(C2C2gata)	A_NTG_S1
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1.00E-05	-13.38	0	326	0.25%	243.4	0.19%	SPL3(SBP)	A_NTG_S1
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1.00E-05	-13.3	0	7233	5.62%	6699.9	5.33%	ANAC057(NAC)	A_NTG_S1
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1.00E-05	-12.89	0	2328	1.81%	2068.9	1.65%	Srebp1a(bHLH)	A_NTG_S1
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1.00E-05	-12.88	0	13091	10.18%	12315.9	9.80%	AT2G20110(CPP)	A_NTG_S1
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1.00E-05	-12.81	0	24557	19.09%	23376.7	18.60%	ATAF1(NAC)	A_NTG_S1
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1.00E-05	-12.81	0	1106	0.86%	940.8	0.75%	SPL14(SBP)	A_NTG_S1
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1.00E-05	-12.73	0	20468	15.91%	19426.7	15.45%	At2g33710(AP2EREBP)	A_NTG_S1
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1.00E-05	-12.45	0	757	0.59%	626.3	0.50%	Unknown1	A_NTG_S1
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1.00E-05	-12.2	0	7087	5.51%	6578	5.23%	ANAC028(NAC)	A_NTG_S1
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1.00E-05	-12.15	0	16023	12.46%	15153.9	12.06%	Hoxd13(Homeobox)	A_NTG_S1
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1.00E-05	-11.93	0	1945	1.51%	1720.5	1.37%	DREB26(AP2EREBP)	A_NTG_S1
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1.00E-05	-11.81	0	791	0.61%	660.3	0.53%	Unknown4	A_NTG_S1
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1.00E-05	-11.66	0	41992	32.65%	40332.9	32.09%	ARF2(ARF)	A_NTG_S1
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1.00E-05	-11.59	0	7493	5.83%	6976.3	5.55%	MYB116(MYB)	A_NTG_S1
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1.00E-05	-11.52	0	2116	1.65%	1883.6	1.50%	AT3G16280(AP2EREBP)	A_NTG_S1
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1.00E-04	-11.42	0	14037	10.91%	13258.1	10.55%	AT1G71450(AP2EREBP)	A_NTG_S1
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1.00E-04	-11.36	0	2448	1.90%	2195.5	1.75%	MGP(C2H2)	A_NTG_S1
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1.00E-04	-11.35	0	6465	5.03%	5999.7	4.77%	PRDM9(Zf)	A_NTG_S1
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1.00E-04	-11.16	0	1785	1.39%	1578.3	1.26%	bHLH157(bHLH)	A_NTG_S1
"NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer"	GGGGGAATCCCC	1.00E-04	-11.02	0	1274	0.99%	1106.5	0.88%	"NFkB-p50,p52(RHD)"	A_NTG_S1
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1.00E-04	-11	0	5780	4.49%	5352.3	4.26%	NTM2(NAC)	A_NTG_S1
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1.00E-04	-10.74	0	2455	1.91%	2208.3	1.76%	HOXA1(Homeobox)	A_NTG_S1
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1.00E-04	-10.68	0	10256	7.97%	9640.1	7.67%	NFAT(RHD)	A_NTG_S1
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1.00E-04	-10.49	1.00E-04	17041	13.25%	16178.8	12.87%	Knotted(Homeobox)	A_NTG_S1
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1.00E-04	-10.46	1.00E-04	1966	1.53%	1753.6	1.40%	At5g65130(AP2EREBP)	A_NTG_S1
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1.00E-04	-10.44	1.00E-04	40	0.03%	19.5	0.02%	bZIP42(bZIP)	A_NTG_S1
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1.00E-04	-10.43	1.00E-04	10343	8.04%	9729.5	7.74%	NAM(NAC)	A_NTG_S1
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1.00E-04	-10.36	1.00E-04	18601	14.46%	17688.4	14.07%	SPL1(SBP)	A_NTG_S1
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1.00E-04	-10.36	1.00E-04	2011	1.56%	1796.3	1.43%	CAMTA5(CAMTA)	A_NTG_S1
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1.00E-04	-10.35	1.00E-04	1146	0.89%	993.5	0.79%	ZNF317(Zf)	A_NTG_S1
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1.00E-04	-10.23	1.00E-04	2919	2.27%	2650.1	2.11%	SPL5(SBP)	A_NTG_S1
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1.00E-04	-10.19	1.00E-04	39901	31.02%	38353.1	30.51%	Zac1(Zf)	A_NTG_S1
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1.00E-04	-10.11	1.00E-04	9791	7.61%	9206.1	7.32%	Egr1(Zf)	A_NTG_S1
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1.00E-04	-9.996	1.00E-04	666	0.52%	557.9	0.44%	SPL13(SBP)	A_NTG_S1
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1.00E-04	-9.88	1.00E-04	249	0.19%	188.9	0.15%	EBNA1(EBV-virus)	A_NTG_S1
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1.00E-04	-9.85	1.00E-04	3270	2.54%	2986.8	2.38%	CArG(MADS)	A_NTG_S1
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1.00E-04	-9.797	1.00E-04	210	0.16%	155.4	0.12%	T1ISRE(IRF)	A_NTG_S1
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1.00E-04	-9.658	1.00E-04	26882	20.90%	25727.3	20.47%	AT2G28810(C2C2dof)	A_NTG_S1
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1.00E-04	-9.606	1.00E-04	8040	6.25%	7537.8	6.00%	RKD2(RWPRK)	A_NTG_S1
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1.00E-04	-9.567	1.00E-04	5583	4.34%	5188.8	4.13%	ANAC047(NAC)	A_NTG_S1
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1.00E-04	-9.49	2.00E-04	8930	6.94%	8393.9	6.68%	LBD13(LOBAS2)	A_NTG_S1
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1.00E-04	-9.369	2.00E-04	650	0.51%	546.5	0.43%	CDM1(C3H)	A_NTG_S1
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1.00E-04	-9.223	2.00E-04	1542	1.20%	1369.5	1.09%	AT3G58630(Trihelix)	A_NTG_S1
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	0.001	-9.198	2.00E-04	1387	1.08%	1225.7	0.98%	At1g77640(AP2EREBP)	A_NTG_S1
"Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer"	ATATGCAAAT	0.001	-8.886	3.00E-04	2623	2.04%	2387.1	1.90%	"Oct2(POU,Homeobox)"	A_NTG_S1
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	0.001	-8.798	3.00E-04	2431	1.89%	2207.5	1.76%	LBD2(LOBAS2)	A_NTG_S1
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	0.001	-8.688	3.00E-04	1251	0.97%	1103.7	0.88%	E2F7(E2F)	A_NTG_S1
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	0.001	-8.668	3.00E-04	5940	4.62%	5545.6	4.41%	ATHB40(HB)	A_NTG_S1
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	0.001	-8.647	4.00E-04	2086	1.62%	1884.1	1.50%	DMRT6(DM)	A_NTG_S1
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	0.001	-8.339	5.00E-04	6958	5.41%	6526.4	5.19%	SPL11(SBP)	A_NTG_S1
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	0.001	-8.297	5.00E-04	8821	6.86%	8315.6	6.62%	bHLH130(bHLH)	A_NTG_S1
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	0.001	-8.265	5.00E-04	4126	3.21%	3821	3.04%	ANL2(HB)	A_NTG_S1
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	0.001	-8.018	7.00E-04	23275	18.10%	22288.3	17.73%	dof24(C2C2dof)	A_NTG_S1
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	0.001	-7.937	7.00E-04	441	0.34%	365.1	0.29%	ZNF768(Zf)	A_NTG_S1
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	0.001	-7.726	9.00E-04	6301	4.90%	5909.7	4.70%	GATA12(C2C2gata)	A_NTG_S1
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	0.001	-7.678	9.00E-04	4507	3.50%	4194.2	3.34%	AIL7(AP2EREBP)	A_NTG_S1
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	0.001	-7.49	0.0011	6713	5.22%	6309.6	5.02%	c-Myc(bHLH)	A_NTG_S1
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	0.001	-7.403	0.0012	24475	19.03%	23475.4	18.68%	Hoxa11(Homeobox)	A_NTG_S1
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	0.001	-7.395	0.0012	3335	2.59%	3082.6	2.45%	ATHB53(HB)	A_NTG_S1
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	0.001	-7.375	0.0012	3547	2.76%	3284.3	2.61%	STAT1(Stat)	A_NTG_S1
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	0.001	-7.353	0.0013	5158	4.01%	4822.3	3.84%	ZNF143|STAF(Zf)	A_NTG_S1
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	0.001	-7.35	0.0013	56237	43.72%	54398.8	43.28%	THRb(NR)	A_NTG_S1
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	0.001	-7.339	0.0013	6596	5.13%	6200.9	4.93%	AT3G25990(Trihelix)	A_NTG_S1
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	0.001	-7.325	0.0013	3357	2.61%	3105	2.47%	ZNF519(Zf)	A_NTG_S1
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	0.001	-7.307	0.0013	5670	4.41%	5313.4	4.23%	ATHB7(Homeobox)	A_NTG_S1
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	0.001	-7.173	0.0015	4778	3.71%	4462.7	3.55%	GATA11(C2C2gata)	A_NTG_S1
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	0.001	-7.135	0.0016	9743	7.57%	9231.6	7.34%	ATHB6(Homeobox)	A_NTG_S1
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	0.001	-7.131	0.0016	1714	1.33%	1551.8	1.23%	REB1	A_NTG_S1
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	0.001	-7.077	0.0016	3149	2.45%	2910.1	2.32%	At1g78700(BZR)	A_NTG_S1
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	0.001	-7.055	0.0017	3892	3.03%	3618.8	2.88%	CES-1(Homeobox)	A_NTG_S1
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	0.001	-7.053	0.0017	3871	3.01%	3598.4	2.86%	GATA1(C2C2gata)	A_NTG_S1
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	0.001	-7.037	0.0017	4654	3.62%	4346.8	3.46%	At1g76110(ARID)	A_NTG_S1
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	0.001	-7.025	0.0017	998	0.78%	882.7	0.70%	HOXA2(Homeobox)	A_NTG_S1
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	0.001	-7.012	0.0017	1669	1.30%	1510.8	1.20%	Nur77(NR)	A_NTG_S1
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	0.001	-6.938	0.0019	6944	5.40%	6543.1	5.21%	SND3(NAC)	A_NTG_S1
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	0.001	-6.926	0.0019	15659	12.17%	14950.4	11.89%	COG1(C2C2dof)	A_NTG_S1
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	0.01	-6.876	0.002	606	0.47%	521.1	0.41%	At4g32800(AP2EREBP)	A_NTG_S1
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	0.01	-6.621	0.0025	5946	4.62%	5592.3	4.45%	ANAC020(NAC)	A_NTG_S1
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	0.01	-6.286	0.0036	9054	7.04%	8590.8	6.83%	DPL-1(E2F)	A_NTG_S1
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	0.01	-6.128	0.0042	6251	4.86%	5896.5	4.69%	HOXA9(Homeobox)	A_NTG_S1
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	0.01	-6.047	0.0045	5342	4.15%	5025.2	4.00%	ANAC005(NAC)	A_NTG_S1
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	0.01	-6.043	0.0045	552	0.43%	477.9	0.38%	GATA19(C2C2gata)	A_NTG_S1
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	0.01	-5.793	0.0058	2070	1.61%	1904.9	1.52%	NRF1(NRF)	A_NTG_S1
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	0.01	-5.717	0.0062	9860	7.67%	9384.9	7.47%	FoxD3(forkhead)	A_NTG_S1
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	0.01	-5.384	0.0087	16486	12.82%	15807.2	12.58%	DAG2(C2C2dof)	A_NTG_S1
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	0.01	-5.363	0.0088	1166	0.91%	1056	0.84%	Phox2b(Homeobox)	A_NTG_S1
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	0.01	-5.34	0.009	2262	1.76%	2093.4	1.67%	MYNN(Zf)	A_NTG_S1
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	0.01	-5.271	0.0096	226	0.18%	185.7	0.15%	EFL-1(E2F)	A_NTG_S1
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	0.01	-5.27	0.0096	36032	28.01%	34809.4	27.69%	OBP3(C2C2dof)	A_NTG_S1
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	0.01	-5.245	0.0099	1171	0.91%	1061.5	0.84%	HDG7(HB)	A_NTG_S1
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	0.01	-5.162	0.0107	10738	8.35%	10251	8.16%	ANAC070(NAC)	A_NTG_S1
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	0.01	-5.161	0.0107	4387	3.41%	4128.8	3.28%	Barx1(Homeobox)	A_NTG_S1
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	0.01	-5.039	0.012	568	0.44%	499.5	0.40%	E2F(E2F)	A_NTG_S1
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	0.01	-5.002	0.0125	7495	5.83%	7123.2	5.67%	VND1(NAC)	A_NTG_S1
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	0.01	-4.99	0.0126	838	0.65%	751.7	0.60%	HAT5(Homeobox)	A_NTG_S1
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	0.01	-4.966	0.0129	12175	9.47%	11647.5	9.27%	RAP26(AP2EREBP)	A_NTG_S1
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	0.01	-4.899	0.0138	14352	11.16%	13758.6	10.95%	TATA-Box(TBP)	A_NTG_S1
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	0.01	-4.893	0.0138	2521	1.96%	2347.5	1.87%	At4g31060(AP2EREBP)	A_NTG_S1
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	0.01	-4.887	0.0139	1791	1.39%	1652.3	1.31%	JKD(C2H2)	A_NTG_S1
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	0.01	-4.847	0.0144	6501	5.05%	6169.8	4.91%	VND3(NAC)	A_NTG_S1
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	0.01	-4.843	0.0144	32745	25.46%	31632.4	25.16%	Erra(NR)	A_NTG_S1
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	0.01	-4.706	0.0165	27551	21.42%	26585.4	21.15%	Znf263(Zf)	A_NTG_S1
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	0.01	-4.694	0.0167	8778	6.82%	8371.1	6.66%	ZNF264(Zf)	A_NTG_S1
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	0.1	-4.559	0.0191	6784	5.27%	6450.5	5.13%	NAC2(NAC)	A_NTG_S1
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	0.1	-4.331	0.0239	372	0.29%	323.8	0.26%	ZNF382(Zf)	A_NTG_S1
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	0.1	-4.29	0.0249	7803	6.07%	7442.7	5.92%	E2F3(E2F)	A_NTG_S1
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	0.1	-4.275	0.0252	6339	4.93%	6029.2	4.80%	Unknown6	A_NTG_S1
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	0.1	-4.126	0.0292	2942	2.29%	2764.4	2.20%	ERF38(AP2EREBP)	A_NTG_S1
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	0.1	-4.09	0.0302	52	0.04%	37.1	0.03%	AT4G27900(C2C2COlike)	A_NTG_S1
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	0.1	-4.087	0.0303	13184	10.25%	12659.6	10.07%	AT2G38300(G2like)	A_NTG_S1
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	0.1	-4.056	0.0312	79	0.06%	60	0.05%	ZNF528(Zf)	A_NTG_S1
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	0.1	-4.049	0.0313	6417	4.99%	6111.3	4.86%	ANAC096(NAC)	A_NTG_S1
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	0.1	-3.971	0.0338	462	0.36%	409	0.33%	dHNF4(NR)	A_NTG_S1
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	0.1	-3.943	0.0347	9260	7.20%	8863.3	7.05%	ERF11(AP2EREBP)	A_NTG_S1
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	0.1	-3.896	0.0363	592	0.46%	531.2	0.42%	HSFA6A(HSF)	A_NTG_S1
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	0.1	-3.896	0.0363	15894	12.36%	15297.6	12.17%	AT2G40260(G2like)	A_NTG_S1
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	0.1	-3.877	0.0369	10348	8.05%	9919.1	7.89%	bHLH122(bHLH)	A_NTG_S1
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	0.1	-3.796	0.0399	4785	3.72%	4545	3.62%	At2g41835(C2H2)	A_NTG_S1
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	0.1	-3.789	0.0401	9063	7.05%	8678.6	6.90%	GTL1(Trihelix)	A_NTG_S1
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	0.1	-3.718	0.043	2490	1.94%	2340	1.86%	AT1G44830(AP2EREBP)	A_NTG_S1
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	0.1	-3.672	0.045	12187	9.47%	11710.8	9.32%	AT5G47660(Trihelix)	A_NTG_S1
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	0.1	-3.606	0.0479	5535	4.30%	5273.1	4.20%	ANAC050(NAC)	A_NTG_S1
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	0	-26150	0	16763	13.64%	1469.9	1.23%	CTCF(Zf)	A_NTG_S2
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	0	-19430	0	17368	14.13%	2493	2.08%	BORIS(Zf)	A_NTG_S2
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	0	-4357	0	8215	6.68%	2375.7	1.98%	SpiB(ETS)	A_NTG_S2
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	0	-3914	0	13954	11.35%	5990.3	5.00%	PU.1(ETS)	A_NTG_S2
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	0	-2978	0	10752	8.75%	4607.9	3.84%	NF1(CTF)	A_NTG_S2
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	0	-2819	0	22880	18.62%	13545.1	11.30%	Elf4(ETS)	A_NTG_S2
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	0	-2756	0	17098	13.91%	9223	7.69%	ELF5(ETS)	A_NTG_S2
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	0	-2705	0	22025	17.92%	13030.3	10.87%	ETS1(ETS)	A_NTG_S2
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	0	-2384	0	19301	15.71%	11343.6	9.46%	Etv2(ETS)	A_NTG_S2
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	0	-2370	0	15937	12.97%	8804.5	7.34%	ELF3(ETS)	A_NTG_S2
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	0	-2291	0	19334	15.73%	11495.7	9.59%	GABPA(ETS)	A_NTG_S2
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	0	-2208	0	29823	24.27%	20163.2	16.82%	ERG(ETS)	A_NTG_S2
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	0	-2064	0	34047	27.70%	24055.4	20.06%	NF1-halfsite(CTF)	A_NTG_S2
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	0	-1985	0	24512	19.95%	16130.6	13.45%	EHF(ETS)	A_NTG_S2
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	0	-1984	0	22313	18.16%	14331.3	11.95%	Fli1(ETS)	A_NTG_S2
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	0	-1771	0	7560	6.15%	3469.6	2.89%	Ets1-distal(ETS)	A_NTG_S2
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	0	-1674	0	27123	22.07%	18911.5	15.77%	ETV1(ETS)	A_NTG_S2
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	0	-1577	0	5004	4.07%	1984.9	1.66%	PU.1:IRF8(ETS:IRF)	A_NTG_S2
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	0	-1476	0	7043	5.73%	3381.3	2.82%	IRF8(IRF)	A_NTG_S2
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	0	-1440	0	11324	9.21%	6506	5.43%	ELF1(ETS)	A_NTG_S2
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	0	-1307	0	26285	21.39%	18996.6	15.84%	Sox10(HMG)	A_NTG_S2
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	0	-1286	0	27441	22.33%	20048.6	16.72%	Sox3(HMG)	A_NTG_S2
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	0	-1270	0	10361	8.43%	6006.9	5.01%	Tlx?(NR)	A_NTG_S2
ETS(ETS)/Promoter/Homer	AACCGGAAGT	0	-1243	0	7784	6.33%	4136.9	3.45%	ETS(ETS)	A_NTG_S2
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	0	-1225	0	12887	10.49%	8025.8	6.69%	EWS:ERG-fusion(ETS)	A_NTG_S2
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	0	-1223	0	22342	18.18%	15807.1	13.18%	PU.1-IRF(ETS:IRF)	A_NTG_S2
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	0	-1128	0	21692	17.65%	15470.7	12.90%	ETV4(ETS)	A_NTG_S2
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	0	-1055	0	16848	13.71%	11549	9.63%	Sox15(HMG)	A_NTG_S2
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	0	-1040	0	14483	11.78%	9631.2	8.03%	Sox4(HMG)	A_NTG_S2
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	0	-1040	0	14779	12.03%	9873.2	8.24%	Sox2(HMG)	A_NTG_S2
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	0	-993.5	0	15238	12.40%	10342.2	8.63%	Sox9(HMG)	A_NTG_S2
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	0	-992.1	0	1124	0.91%	202.2	0.17%	CTCF-SatelliteElement(Zf?)	A_NTG_S2
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	0	-971.1	0	37728	30.70%	30136.1	25.14%	HIC1(Zf)	A_NTG_S2
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	0	-960.7	0	23504	19.12%	17446.7	14.55%	Sox6(HMG)	A_NTG_S2
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	0	-951.2	0	27702	22.54%	21162.7	17.65%	Sox21(HMG)	A_NTG_S2
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	0	-901.9	0	5718	4.65%	3041	2.54%	IRF3(IRF)	A_NTG_S2
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	0	-853.9	0	7304	5.94%	4270.7	3.56%	NFIL3(bZIP)	A_NTG_S2
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	0	-823.8	0	2189	1.78%	782.4	0.65%	RFX(HTH)	A_NTG_S2
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	0	-816.2	0	2346	1.91%	877.9	0.73%	Rfx2(HTH)	A_NTG_S2
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	0	-779.8	0	11343	9.23%	7579	6.32%	Sox17(HMG)	A_NTG_S2
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	0	-751.8	0	5137	4.18%	2797.1	2.33%	CREB5(bZIP)	A_NTG_S2
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1.00E-298	-687.9	0	12304	10.01%	8564.7	7.14%	Bcl11a(Zf)	A_NTG_S2
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1.00E-280	-646.3	0	7714	6.28%	4913.1	4.10%	Fos(bZIP)	A_NTG_S2
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1.00E-280	-646.2	0	10516	8.56%	7176.2	5.99%	EWS:FLI1-fusion(ETS)	A_NTG_S2
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1.00E-280	-645.4	0	10229	8.32%	6942.2	5.79%	Elk4(ETS)	A_NTG_S2
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1.00E-274	-631	0	17624	14.34%	13245	11.05%	Sp5(Zf)	A_NTG_S2
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1.00E-269	-621.3	0	9474	7.71%	6375.8	5.32%	THRb(NR)	A_NTG_S2
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1.00E-262	-603.7	0	7275	5.92%	4641.1	3.87%	Fra1(bZIP)	A_NTG_S2
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1.00E-259	-597.3	0	8671	7.06%	5771.3	4.81%	Atf3(bZIP)	A_NTG_S2
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1.00E-255	-588.2	0	17062	13.88%	12882.6	10.75%	SPDEF(ETS)	A_NTG_S2
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1.00E-255	-587.9	0	4448	3.62%	2498.1	2.08%	c-Jun-CRE(bZIP)	A_NTG_S2
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1.00E-254	-587.2	0	6492	5.28%	4054.4	3.38%	Fra2(bZIP)	A_NTG_S2
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1.00E-254	-585.4	0	9862	8.02%	6769.2	5.65%	AP-1(bZIP)	A_NTG_S2
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1.00E-249	-574.3	0	1835	1.49%	726.7	0.61%	RORg(NR)	A_NTG_S2
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1.00E-246	-568.1	0	6475	5.27%	4073.2	3.40%	Atf7(bZIP)	A_NTG_S2
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1.00E-242	-557.8	0	14314	11.65%	10592.7	8.84%	NeuroD1(bHLH)	A_NTG_S2
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1.00E-240	-554.3	0	2808	2.28%	1370.1	1.14%	IRF1(IRF)	A_NTG_S2
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1.00E-239	-550.4	0	7252	5.90%	4720.6	3.94%	JunB(bZIP)	A_NTG_S2
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1.00E-237	-547.2	0	4832	3.93%	2840.1	2.37%	Atf2(bZIP)	A_NTG_S2
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1.00E-236	-544.1	0	2395	1.95%	1103.2	0.92%	X-box(HTH)	A_NTG_S2
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1.00E-235	-542.6	0	2434	1.98%	1130.4	0.94%	Mef2d(MADS)	A_NTG_S2
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1.00E-234	-540.5	0	8522	6.93%	5766.5	4.81%	Atf1(bZIP)	A_NTG_S2
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1.00E-230	-531.2	0	10592	8.62%	7500.4	6.26%	Elk1(ETS)	A_NTG_S2
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1.00E-228	-525.2	0	5654	4.60%	3504	2.92%	Sp1(Zf)	A_NTG_S2
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1.00E-225	-519.8	0	4837	3.94%	2884.2	2.41%	Fosl2(bZIP)	A_NTG_S2
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1.00E-213	-490.5	0	8523	6.94%	5875.6	4.90%	BATF(bZIP)	A_NTG_S2
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1.00E-209	-483.5	0	2469	2.01%	1208.1	1.01%	RORa(NR)	A_NTG_S2
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1.00E-209	-483.2	0	4705	3.83%	2839	2.37%	Mef2c(MADS)	A_NTG_S2
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1.00E-203	-469	0	2237	1.82%	1065	0.89%	IRF2(IRF)	A_NTG_S2
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1.00E-202	-465.9	0	10562	8.59%	7639.7	6.37%	Zic3(Zf)	A_NTG_S2
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1.00E-201	-464.4	0	1610	1.31%	664.3	0.55%	JunD(bZIP)	A_NTG_S2
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1.00E-199	-459.7	0	3920	3.19%	2279.7	1.90%	Rfx1(HTH)	A_NTG_S2
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1.00E-196	-453.4	0	17639	14.35%	13825.7	11.53%	Tcf12(bHLH)	A_NTG_S2
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1.00E-190	-439.2	0	69844	56.83%	63109.1	52.64%	SCL(bHLH)	A_NTG_S2
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1.00E-190	-437.8	0	10295	8.38%	7487.1	6.24%	Unknown-ESC-element(?)	A_NTG_S2
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1.00E-189	-436.1	0	3572	2.91%	2052.2	1.71%	Jun-AP1(bZIP)	A_NTG_S2
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1.00E-187	-432	0	74587	60.69%	67825.6	56.57%	AZF1(C2H2)	A_NTG_S2
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1.00E-187	-431.9	0	2414	1.96%	1222.5	1.02%	RORgt(NR)	A_NTG_S2
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1.00E-187	-431.9	0	2414	1.96%	1222.5	1.02%	RORgt(NR)	A_NTG_S2
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1.00E-185	-426.1	0	1493	1.21%	619.2	0.52%	TGA5(bZIP)	A_NTG_S2
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1.00E-183	-421.8	0	69387	56.46%	62762.1	52.35%	At3g60580(C2H2)	A_NTG_S2
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1.00E-182	-419.2	0	476	0.39%	86.7	0.07%	REST-NRSF(Zf)	A_NTG_S2
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1.00E-177	-409	0	8918	7.26%	6399.5	5.34%	HLF(bZIP)	A_NTG_S2
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1.00E-172	-397.9	0	8903	7.24%	6415.4	5.35%	Mef2b(MADS)	A_NTG_S2
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1.00E-172	-397.1	0	4657	3.79%	2944	2.46%	Usf2(bHLH)	A_NTG_S2
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1.00E-172	-396.6	0	12948	10.54%	9892.6	8.25%	MITF(bHLH)	A_NTG_S2
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1.00E-169	-389.9	0	17521	14.26%	13953.1	11.64%	Rfx6(HTH)	A_NTG_S2
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1.00E-167	-385.5	0	21197	17.25%	17276.6	14.41%	Ap4(bHLH)	A_NTG_S2
"ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer"	RCAGGATGTGGT	1.00E-164	-379.3	0	1954	1.59%	959.2	0.80%	"ETS:RUNX(ETS,Runt)"	A_NTG_S2
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1.00E-163	-375.4	0	10328	8.40%	7690.3	6.41%	bZIP50(bZIP)	A_NTG_S2
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1.00E-161	-372.4	0	5891	4.79%	3977.9	3.32%	Rfx5(HTH)	A_NTG_S2
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1.00E-161	-372	0	45828	37.29%	40288.9	33.60%	Tgif2(Homeobox)	A_NTG_S2
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1.00E-159	-366.3	0	6363	5.18%	4376.4	3.65%	TGA6(bZIP)	A_NTG_S2
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1.00E-158	-364.5	0	18655	15.18%	15070.5	12.57%	Atoh1(bHLH)	A_NTG_S2
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1.00E-154	-354.7	0	23678	19.27%	19672	16.41%	Sp2(Zf)	A_NTG_S2
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1.00E-152	-352.2	0	4675	3.80%	3039.7	2.54%	Mef2a(MADS)	A_NTG_S2
"GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer"	VAGRACAKWCTGTYC	1.00E-151	-348.5	0	3870	3.15%	2412.8	2.01%	"GRE(NR),IR3"	A_NTG_S2
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1.00E-149	-344.5	0	4959	4.04%	3281.8	2.74%	Sox7(HMG)	A_NTG_S2
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1.00E-142	-329.2	0	24155	19.65%	20230.9	16.87%	NeuroG2(bHLH)	A_NTG_S2
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1.00E-142	-329.1	0	3520	2.86%	2173.9	1.81%	PGR(NR)	A_NTG_S2
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1.00E-138	-318.3	0	16553	13.47%	13372.5	11.15%	Tcf21(bHLH)	A_NTG_S2
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1.00E-136	-314.1	0	4851	3.95%	3256.9	2.72%	TGA1(bZIP)	A_NTG_S2
"GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer"	NRGVACABNVTGTYCY	1.00E-134	-308.8	0	2397	1.95%	1354.4	1.13%	"GRE(NR),IR3"	A_NTG_S2
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1.00E-134	-308.6	0	26866	21.86%	22835.9	19.05%	Foxo1(Forkhead)	A_NTG_S2
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1.00E-133	-306.5	0	3386	2.76%	2107.5	1.76%	TGA4(bZIP)	A_NTG_S2
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1.00E-129	-297.3	0	10147	8.26%	7778.8	6.49%	RUNX(Runt)	A_NTG_S2
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1.00E-128	-296.1	0	22594	18.38%	18962.6	15.82%	BHLHA15(bHLH)	A_NTG_S2
SeqBias: CG bias	SSSSSSSSSS	1.00E-127	-293.5	0	103928	84.57%	98284.8	81.98%	SeqBias: CG bias	A_NTG_S2
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1.00E-125	-289.4	0	44984	36.60%	40002.8	33.37%	Smad3(MAD)	A_NTG_S2
SeqBias: GA-repeat	GAGAGAGAGA	1.00E-125	-289.2	0	86534	70.41%	80617.9	67.24%	SeqBias: GA-repeat	A_NTG_S2
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1.00E-124	-287	0	6174	5.02%	4410	3.68%	TGA10(bZIP)	A_NTG_S2
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1.00E-122	-283.1	0	991	0.81%	411.6	0.34%	TGA3(bZIP)	A_NTG_S2
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1.00E-119	-275	0	14560	11.85%	11766.5	9.81%	KLF1(Zf)	A_NTG_S2
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1.00E-117	-269.9	0	10077	8.20%	7811.3	6.52%	RUNX-AML(Runt)	A_NTG_S2
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1.00E-116	-269.1	0	8364	6.81%	6324.5	5.28%	KLF3(Zf)	A_NTG_S2
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1.00E-116	-267.6	0	5420	4.41%	3829.5	3.19%	E2FA(E2FDP)	A_NTG_S2
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1.00E-113	-261.7	0	22753	18.51%	19288.3	16.09%	COUP-TFII(NR)	A_NTG_S2
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1.00E-111	-257.5	0	29032	23.62%	25140.5	20.97%	Olig2(bHLH)	A_NTG_S2
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1.00E-111	-257.3	0	1219	0.99%	579.4	0.48%	ISRE(IRF)	A_NTG_S2
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1.00E-110	-253.5	0	7800	6.35%	5887.6	4.91%	Zic2(Zf)	A_NTG_S2
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1.00E-108	-249.1	0	21619	17.59%	18312.6	15.27%	bZIP52(bZIP)	A_NTG_S2
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1.00E-106	-245.7	0	3072	2.50%	1968.4	1.64%	Bach2(bZIP)	A_NTG_S2
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1.00E-102	-235.6	0	19747	16.07%	16664.6	13.90%	BMYB(HTH)	A_NTG_S2
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1.00E-101	-234.5	0	6227	5.07%	4597.4	3.83%	USF1(bHLH)	A_NTG_S2
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1.00E-98	-226.1	0	493	0.40%	156.7	0.13%	Ronin(THAP)	A_NTG_S2
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1.00E-97	-225.6	0	4609	3.75%	3259.4	2.72%	ARE(NR)	A_NTG_S2
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1.00E-97	-225.4	0	16019	13.03%	13311.3	11.10%	LHX9(Homeobox)	A_NTG_S2
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1.00E-97	-223.9	0	26291	21.39%	22790.4	19.01%	MYB88(MYB)	A_NTG_S2
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1.00E-97	-223.6	0	11465	9.33%	9216.8	7.69%	RUNX2(Runt)	A_NTG_S2
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1.00E-96	-222.1	0	12696	10.33%	10324.4	8.61%	TGA9(bZIP)	A_NTG_S2
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1.00E-96	-221.3	0	32204	26.20%	28351	23.65%	PR(NR)	A_NTG_S2
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1.00E-95	-219.8	0	3054	2.49%	2003.5	1.67%	CRE(bZIP)	A_NTG_S2
SeqBias: polyA-repeat	AAAAAAAAAA	1.00E-94	-217.8	0	120156	97.77%	116035.6	96.78%	SeqBias: polyA-repeat	A_NTG_S2
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1.00E-94	-216.5	0	13909	11.32%	11442.6	9.54%	MyoD(bHLH)	A_NTG_S2
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1.00E-93	-215.1	0	23912	19.46%	20630.5	17.21%	TCF4(bHLH)	A_NTG_S2
SeqBias: C/A-bias	MMMMMMMMMM	1.00E-91	-209.8	0	122833	99.95%	119514.4	99.69%	SeqBias: C	A_NTG_S2
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1.00E-89	-206.1	0	6441	5.24%	4867.1	4.06%	Hoxa10(Homeobox)	A_NTG_S2
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1.00E-89	-205.8	0	27284	22.20%	23835.2	19.88%	KLF14(Zf)	A_NTG_S2
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1.00E-88	-204.4	0	80597	65.58%	75334	62.84%	SUT1?	A_NTG_S2
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1.00E-87	-201.1	0	19793	16.11%	16900.7	14.10%	TF3A(C2H2)	A_NTG_S2
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1.00E-86	-199.4	0	21103	17.17%	18121.8	15.12%	AMYB(HTH)	A_NTG_S2
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1.00E-84	-195.2	0	20758	16.89%	17827.6	14.87%	En1(Homeobox)	A_NTG_S2
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1.00E-83	-192.2	0	1320	1.07%	718	0.60%	TFE3(bHLH)	A_NTG_S2
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1.00E-80	-185.5	0	21394	17.41%	18477.2	15.41%	GLIS3(Zf)	A_NTG_S2
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1.00E-80	-184.5	0	5477	4.46%	4107.1	3.43%	TGA2(bZIP)	A_NTG_S2
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1.00E-79	-182.9	0	9024	7.34%	7214.8	6.02%	REF6(Zf)	A_NTG_S2
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1.00E-78	-181.2	0	11523	9.38%	9457.5	7.89%	Lhx2(Homeobox)	A_NTG_S2
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1.00E-78	-181.1	0	3015	2.45%	2052.4	1.71%	Atf4(bZIP)	A_NTG_S2
"Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer"	NNNVCTGWGYAAACASN	1.00E-76	-177.2	0	12898	10.49%	10720.4	8.94%	"Fox:Ebox(Forkhead,bHLH)"	A_NTG_S2
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1.00E-76	-176.8	0	78174	63.61%	73172.8	61.03%	STZ(C2H2)	A_NTG_S2
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1.00E-74	-171.8	0	7275	5.92%	5713.6	4.77%	CEBP(bZIP)	A_NTG_S2
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1.00E-73	-170.2	0	75408	61.36%	70502.3	58.81%	At5g04390(C2H2)	A_NTG_S2
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1.00E-73	-169.9	0	55998	45.56%	51535.1	42.98%	GAGA-repeat	A_NTG_S2
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1.00E-72	-167.9	0	3501	2.85%	2483.9	2.07%	Cbf1(bHLH)	A_NTG_S2
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1.00E-72	-166.1	0	1019	0.83%	534.4	0.45%	Bach1(bZIP)	A_NTG_S2
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1.00E-69	-159.3	0	20659	16.81%	17966.9	14.99%	Maz(Zf)	A_NTG_S2
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1.00E-68	-157.5	0	25126	20.44%	22153.8	18.48%	NLP7(RWPRK)	A_NTG_S2
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1.00E-66	-153.3	0	3927	3.20%	2880.3	2.40%	AT2G31460(REMB3)	A_NTG_S2
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1.00E-66	-153.3	0	16212	13.19%	13886.3	11.58%	MYB81(MYB)	A_NTG_S2
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1.00E-65	-151.8	0	1097	0.89%	608	0.51%	NF-E2(bZIP)	A_NTG_S2
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1.00E-65	-150.2	0	8005	6.51%	6447.8	5.38%	AGL63(MADS)	A_NTG_S2
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1.00E-64	-148.8	0	5777	4.70%	4488	3.74%	IRF4(IRF)	A_NTG_S2
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1.00E-64	-148.3	0	10191	8.29%	8416.6	7.02%	Stat3+il21(Stat)	A_NTG_S2
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1.00E-63	-145.9	0	3754	3.05%	2755.2	2.30%	SOC1(MADS)	A_NTG_S2
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1.00E-63	-145.4	0	21283	17.32%	18645.7	15.55%	MYB73(MYB)	A_NTG_S2
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1.00E-61	-141.2	0	30732	25.01%	27571	23.00%	ERF15(AP2EREBP)	A_NTG_S2
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1.00E-59	-136.3	0	4731	3.85%	3622.9	3.02%	WUS1(Homeobox)	A_NTG_S2
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1.00E-58	-134.7	0	1512	1.23%	945.7	0.79%	Unknown3	A_NTG_S2
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1.00E-56	-130.9	0	6232	5.07%	4956.5	4.13%	Dlx3(Homeobox)	A_NTG_S2
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1.00E-56	-129.5	0	7073	5.76%	5708.6	4.76%	FOXK2(Forkhead)	A_NTG_S2
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1.00E-55	-128.7	0	27534	22.40%	24651.6	20.56%	Twist2(bHLH)	A_NTG_S2
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1.00E-55	-128.6	0	23202	18.88%	20570.8	17.16%	MYB(HTH)	A_NTG_S2
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1.00E-55	-128.1	0	922	0.75%	510.9	0.43%	Nrf2(bZIP)	A_NTG_S2
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1.00E-55	-127.8	0	12409	10.10%	10546.2	8.80%	STAT4(Stat)	A_NTG_S2
GFY(?)/Promoter/Homer	ACTACAATTCCC	1.00E-55	-127.4	0	962	0.78%	540.7	0.45%	GFY(?)	A_NTG_S2
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1.00E-55	-127.1	0	51300	41.74%	47409.9	39.54%	Nanog(Homeobox)	A_NTG_S2
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1.00E-54	-126	0	4274	3.48%	3262.3	2.72%	Zfp281(Zf)	A_NTG_S2
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1.00E-54	-125.1	0	2292	1.86%	1589.8	1.33%	Chop(bZIP)	A_NTG_S2
"Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer"	CCATTGTATGCAAAT	1.00E-54	-124.4	0	1550	1.26%	993.9	0.83%	"Oct4:Sox17(POU,Homeobox,HMG)"	A_NTG_S2
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1.00E-53	-123.1	0	12755	10.38%	10892.4	9.09%	Zic(Zf)	A_NTG_S2
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1.00E-53	-122.3	0	7552	6.14%	6169.2	5.15%	HY5(bZIP)	A_NTG_S2
SeqBias: GCW-triplet	GCWGCWGCWGCW	1.00E-52	-121.3	0	122888	99.99%	119740.1	99.87%	SeqBias: GCW-triplet	A_NTG_S2
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1.00E-52	-120.9	0	1639	1.33%	1070.7	0.89%	BIM3(bHLH)	A_NTG_S2
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1.00E-52	-120.1	0	7893	6.42%	6486.6	5.41%	Foxo3(Forkhead)	A_NTG_S2
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1.00E-51	-118.4	0	12345	10.04%	10545.6	8.80%	SPCH(bHLH)	A_NTG_S2
SeqBias: G/A bias	RRRRRRRRRR	1.00E-50	-117.3	0	122867	99.98%	119693.5	99.84%	SeqBias: G	A_NTG_S2
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1.00E-50	-117.1	0	30454	24.78%	27522.4	22.96%	Initiator	A_NTG_S2
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1.00E-50	-116.7	0	8323	6.77%	6890.5	5.75%	CEBP:AP1(bZIP)	A_NTG_S2
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1.00E-49	-113.4	0	20969	17.06%	18597.7	15.51%	ZNF416(Zf)	A_NTG_S2
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1.00E-49	-112.8	0	23662	19.25%	21135	17.63%	MYB101(MYB)	A_NTG_S2
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1.00E-48	-112	0	9843	8.01%	8294.4	6.92%	AtHB32(ZFHD)	A_NTG_S2
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1.00E-47	-109.1	0	27033	22.00%	24353.3	20.31%	Nkx6.1(Homeobox)	A_NTG_S2
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1.00E-46	-106.9	0	1163	0.95%	722.8	0.60%	E-box(bHLH)	A_NTG_S2
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1.00E-46	-106.8	0	6727	5.47%	5504.4	4.59%	Klf9(Zf)	A_NTG_S2
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1.00E-45	-105.3	0	23853	19.41%	21381.7	17.83%	AT5G23930(mTERF)	A_NTG_S2
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1.00E-45	-104.2	0	11579	9.42%	9931.8	8.28%	Lhx1(Homeobox)	A_NTG_S2
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1.00E-44	-102.2	0	14178	11.54%	12347	10.30%	RUNX1(Runt)	A_NTG_S2
Tal1	CATCTG	1.00E-43	-100.7	0	19896	16.19%	17696	14.76%	Tal1	A_NTG_S2
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1.00E-43	-99.99	0	17560	14.29%	15513.2	12.94%	Lhx3(Homeobox)	A_NTG_S2
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1.00E-43	-99.62	0	12380	10.07%	10700.8	8.93%	FEA4(bZIP)	A_NTG_S2
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1.00E-42	-96.89	0	11973	9.74%	10343.5	8.63%	EBF2(EBF)	A_NTG_S2
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1.00E-41	-96.45	0	40365	32.84%	37209.5	31.04%	Tgif1(Homeobox)	A_NTG_S2
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1.00E-41	-96.18	0	5537	4.51%	4490.7	3.75%	THRa(NR)	A_NTG_S2
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1.00E-41	-95.35	0	1337	1.09%	880.1	0.73%	BIM1(bHLH)	A_NTG_S2
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1.00E-40	-92.58	0	3850	3.13%	3014.7	2.51%	E-box	A_NTG_S2
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1.00E-40	-92.5	0	6928	5.64%	5757.3	4.80%	CLOCK(bHLH)	A_NTG_S2
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1.00E-39	-90.95	0	3513	2.86%	2726.5	2.27%	Pbx3(Homeobox)	A_NTG_S2
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1.00E-39	-90.81	0	15980	13.00%	14111.6	11.77%	MYB77(MYB)	A_NTG_S2
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1.00E-38	-89.79	0	41142	33.48%	38034.6	31.72%	Trl(Zf)	A_NTG_S2
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1.00E-38	-89.06	0	14681	11.95%	12913.9	10.77%	EBF1(EBF)	A_NTG_S2
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1.00E-38	-87.9	0	15980	13.00%	14136	11.79%	DLX2(Homeobox)	A_NTG_S2
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1.00E-37	-86.98	0	24436	19.88%	22107.2	18.44%	Smad4(MAD)	A_NTG_S2
"OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer"	ATGAATATTCATGAG	1.00E-37	-86.11	0	148	0.12%	40.8	0.03%	"OCT:OCT(POU,Homeobox)"	A_NTG_S2
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1.00E-37	-85.75	0	7664	6.24%	6462.1	5.39%	DLX5(Homeobox)	A_NTG_S2
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1.00E-37	-85.31	0	13241	10.77%	11602.3	9.68%	PIF5ox(bHLH)	A_NTG_S2
"GFY-Staf(?,Zf)/Promoter/Homer"	RACTACAATTCCCAGAAKGC	1.00E-36	-85.05	0	797	0.65%	477.1	0.40%	"GFY-Staf(?,Zf)"	A_NTG_S2
SeqBias: A/T bias	WWWWWWWWWW	1.00E-36	-84.1	0	97128	79.03%	92953.6	77.53%	SeqBias: A	A_NTG_S2
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1.00E-36	-83.78	0	8195	6.67%	6958.2	5.80%	SGR5(C2H2)	A_NTG_S2
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1.00E-35	-82.79	0	11767	9.57%	10253.5	8.55%	Myf5(bHLH)	A_NTG_S2
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1.00E-35	-81.88	0	8309	6.76%	7074.4	5.90%	FoxL2(Forkhead)	A_NTG_S2
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1.00E-34	-80.05	0	4713	3.83%	3830.2	3.19%	FOXP1(Forkhead)	A_NTG_S2
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1.00E-34	-79.58	0	6945	5.65%	5844.1	4.87%	Stat3(Stat)	A_NTG_S2
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1.00E-34	-79.44	0	8916	7.25%	7646.7	6.38%	Foxf1(Forkhead)	A_NTG_S2
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1.00E-34	-79.22	0	2907	2.37%	2242.6	1.87%	bHLH74(bHLH)	A_NTG_S2
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1.00E-34	-78.88	0	12318	10.02%	10794.1	9.00%	RIN(MADS)	A_NTG_S2
"ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer"	AGGAARCAGCTG	1.00E-34	-78.88	0	1554	1.26%	1093.8	0.91%	"ETS:E-box(ETS,bHLH)"	A_NTG_S2
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1.00E-34	-78.74	0	3318	2.70%	2602.8	2.17%	Pknox1(Homeobox)	A_NTG_S2
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1.00E-33	-77.53	0	3156	2.57%	2465.4	2.06%	VIP1(bZIP)	A_NTG_S2
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1.00E-33	-76.45	0	17038	13.86%	15227.6	12.70%	At1g75490(AP2EREBP)	A_NTG_S2
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1.00E-33	-76.21	0	2636	2.14%	2018	1.68%	MYB98(MYB)	A_NTG_S2
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1.00E-32	-75.2	0	10932	8.90%	9536	7.95%	FOXK1(Forkhead)	A_NTG_S2
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1.00E-32	-74.92	0	4045	3.29%	3259.6	2.72%	DREB19(AP2EREBP)	A_NTG_S2
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1.00E-31	-73.13	0	19843	16.15%	17902.2	14.93%	JGL(C2H2)	A_NTG_S2
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1.00E-31	-73	0	10329	8.40%	8994.7	7.50%	LIN-39(Homeobox)	A_NTG_S2
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1.00E-31	-72.86	0	1456	1.18%	1027.4	0.86%	IRF:BATF(IRF:bZIP)	A_NTG_S2
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1.00E-29	-67.91	0	77755	63.27%	73968.5	61.70%	bZIP18(bZIP)	A_NTG_S2
"OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer"	ATGCATWATGCATRW	1.00E-29	-67.74	0	5784	4.71%	4858.8	4.05%	"OCT:OCT-short(POU,Homeobox)"	A_NTG_S2
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1.00E-29	-67.51	0	6726	5.47%	5717.6	4.77%	Hand2(bHLH)	A_NTG_S2
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1.00E-29	-66.9	0	5282	4.30%	4408.1	3.68%	E2F4(E2F)	A_NTG_S2
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1.00E-28	-66.18	0	11675	9.50%	10298	8.59%	TAGL1(MADS)	A_NTG_S2
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1.00E-28	-65.58	0	8868	7.22%	7698.2	6.42%	WT1(Zf)	A_NTG_S2
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1.00E-28	-65.3	0	21746	17.69%	19787.5	16.50%	Isl1(Homeobox)	A_NTG_S2
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1.00E-28	-65.01	0	15276	12.43%	13680	11.41%	MYB70(MYB)	A_NTG_S2
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1.00E-27	-64.1	0	1335	1.09%	949.1	0.79%	PBX1(Homeobox)	A_NTG_S2
"Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer"	TATGCWAATBAV	1.00E-27	-63.24	0	3381	2.75%	2722.3	2.27%	"Brn1(POU,Homeobox)"	A_NTG_S2
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1.00E-27	-62.73	0	7870	6.40%	6798.7	5.67%	Gfi1b(Zf)	A_NTG_S2
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1.00E-27	-62.19	0	23997	19.53%	21962.5	18.32%	Smad2(MAD)	A_NTG_S2
"Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer"	GATTTGCATA	1.00E-26	-61.83	0	3164	2.57%	2536.5	2.12%	"Oct11(POU,Homeobox)"	A_NTG_S2
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1.00E-26	-61.7	0	2625	2.14%	2062.5	1.72%	Unknown1(NR	A_NTG_S2
"OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer"	ATGAATWATTCATGA	1.00E-26	-61.42	0	214	0.17%	90.9	0.08%	"OCT:OCT(POU,Homeobox,IR1)"	A_NTG_S2
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1.00E-26	-61.37	0	2193	1.78%	1687	1.41%	bZIP69(bZIP)	A_NTG_S2
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1.00E-26	-61.29	0	12964	10.55%	11545.8	9.63%	ZNF467(Zf)	A_NTG_S2
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1.00E-26	-61.22	0	55962	45.54%	52763.2	44.01%	AR-halfsite(NR)	A_NTG_S2
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1.00E-26	-60.54	0	2703	2.20%	2135.2	1.78%	EBF(EBF)	A_NTG_S2
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1.00E-26	-60.35	0	12550	10.21%	11166.1	9.31%	MYB65(MYB)	A_NTG_S2
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1.00E-26	-59.99	0	6222	5.06%	5304.1	4.42%	STAT6(Stat)	A_NTG_S2
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1.00E-25	-59.67	0	2339	1.90%	1820.6	1.52%	PIF7(bHLH)	A_NTG_S2
"Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer"	WATGCAAATGAG	1.00E-25	-58.97	0	4500	3.66%	3745.9	3.12%	"Oct6(POU,Homeobox)"	A_NTG_S2
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1.00E-25	-58.22	0	12213	9.94%	10870.8	9.07%	ATHB33(ZFHD)	A_NTG_S2
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1.00E-25	-57.94	0	30475	24.80%	28203.9	23.52%	Nkx3.1(Homeobox)	A_NTG_S2
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1.00E-25	-57.57	0	2789	2.27%	2223.5	1.85%	AREB3(bZIP)	A_NTG_S2
"NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer"	WNTGTTTRYTTTGGCA	1.00E-24	-57.13	0	700	0.57%	449.1	0.37%	"NF1:FOXA1(CTF,Forkhead)"	A_NTG_S2
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1.00E-24	-57.12	0	8721	7.10%	7626.9	6.36%	Foxa2(Forkhead)	A_NTG_S2
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1.00E-24	-56.31	0	1322	1.08%	959	0.80%	AGL15(MADS)	A_NTG_S2
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1.00E-23	-55.14	0	17615	14.33%	15987.1	13.33%	MyoG(bHLH)	A_NTG_S2
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1.00E-23	-54.9	0	2083	1.69%	1615.1	1.35%	Hoxb4(Homeobox)	A_NTG_S2
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1.00E-23	-54.77	0	7209	5.87%	6246.5	5.21%	ZBTB18(Zf)	A_NTG_S2
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1.00E-23	-54.46	0	18915	15.39%	17226.7	14.37%	Rbpj1(?)	A_NTG_S2
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1.00E-23	-54.41	0	2497	2.03%	1979	1.65%	bZIP28(bZIP)	A_NTG_S2
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1.00E-23	-54.05	0	42277	34.40%	39615.2	33.04%	HuR(?)	A_NTG_S2
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1.00E-23	-53.64	0	3212	2.61%	2616.4	2.18%	bZIP48(bZIP)	A_NTG_S2
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1.00E-23	-53.45	0	4050	3.30%	3369.2	2.81%	At5g08750(C3H)	A_NTG_S2
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1.00E-23	-53.42	0	12229	9.95%	10930.6	9.12%	ZNF189(Zf)	A_NTG_S2
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1.00E-22	-52.66	0	1585	1.29%	1193.4	1.00%	Unknown3	A_NTG_S2
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1.00E-22	-52.46	0	12754	10.38%	11432.2	9.54%	AT1G69570(C2C2dof)	A_NTG_S2
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1.00E-22	-52.13	0	13091	10.65%	11752.5	9.80%	MafA(bZIP)	A_NTG_S2
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1.00E-22	-50.96	0	163	0.13%	66.9	0.06%	GFX(?)	A_NTG_S2
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1.00E-21	-50.53	0	9274	7.55%	8194.1	6.83%	Pdx1(Homeobox)	A_NTG_S2
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1.00E-21	-49.64	0	865	0.70%	597.2	0.50%	NFE2L2(bZIP)	A_NTG_S2
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1.00E-21	-49.07	0	986	0.80%	698.9	0.58%	AGL6(MADS)	A_NTG_S2
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1.00E-20	-47.99	0	2879	2.34%	2346.2	1.96%	bZIP53(bZIP)	A_NTG_S2
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1.00E-20	-47.93	0	12720	10.35%	11446.6	9.55%	FOXA1(Forkhead)	A_NTG_S2
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1.00E-20	-47.42	0	13531	11.01%	12215.5	10.19%	SOL1(CPP)	A_NTG_S2
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1.00E-20	-46.55	0	38321	31.18%	35918.1	29.96%	PHA-4(Forkhead)	A_NTG_S2
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1.00E-20	-46.45	0	3103	2.52%	2554.3	2.13%	bHLH34(bHLH)	A_NTG_S2
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1.00E-20	-46.11	0	18684	15.20%	17108.6	14.27%	MYB33(MYB)	A_NTG_S2
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1.00E-20	-46.09	0	9737	7.92%	8666.3	7.23%	LBD23(LOBAS2)	A_NTG_S2
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1.00E-19	-45.65	0	15451	12.57%	14048.4	11.72%	AtGRF6(GRF)	A_NTG_S2
"Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer"	AGGTGHCAGACA	1.00E-19	-45.62	0	2588	2.11%	2098.6	1.75%	"Tbox:Smad(T-box,MAD)"	A_NTG_S2
"Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer"	ATGAATATTC	1.00E-19	-45.38	0	821	0.67%	571.3	0.48%	"Brn2(POU,Homeobox)"	A_NTG_S2
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1.00E-19	-45.35	0	3248	2.64%	2690.3	2.24%	DREB2(AP2EREBP)	A_NTG_S2
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1.00E-19	-44.78	0	3021	2.46%	2489.6	2.08%	M1BP(Zf)	A_NTG_S2
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1.00E-19	-44.78	0	15832	12.88%	14419.2	12.03%	KLF6(Zf)	A_NTG_S2
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1.00E-19	-44.4	0	6122	4.98%	5320.2	4.44%	Foxh1(Forkhead)	A_NTG_S2
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1.00E-19	-44.4	0	6463	5.26%	5635.7	4.70%	STAT6(Stat)	A_NTG_S2
"OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer"	ATTTGCATAACAATG	1.00E-19	-44.01	0	1734	1.41%	1352.2	1.13%	"OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)"	A_NTG_S2
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1.00E-18	-43.63	0	12942	10.53%	11701.6	9.76%	KAN2(G2like)	A_NTG_S2
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1.00E-18	-43.54	0	3671	2.99%	3082.8	2.57%	bHLHE40(bHLH)	A_NTG_S2
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1.00E-18	-43.19	0	7918	6.44%	6995.6	5.83%	ATHB13(Homeobox)	A_NTG_S2
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1.00E-18	-42.72	0	2920	2.38%	2409.1	2.01%	GBF5(bZIP)	A_NTG_S2
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1.00E-18	-42.67	0	30286	24.64%	28247.1	23.56%	Hoxa9(Homeobox)	A_NTG_S2
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1.00E-18	-41.92	0	7272	5.92%	6405.9	5.34%	NAP(NAC)	A_NTG_S2
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1.00E-18	-41.73	0	15507	12.62%	14148	11.80%	PIF4(bHLH)	A_NTG_S2
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1.00E-18	-41.51	0	14021	11.41%	12744.9	10.63%	TCX2(CPP)	A_NTG_S2
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1.00E-17	-41.41	0	2422	1.97%	1970.4	1.64%	MYB119(MYB)	A_NTG_S2
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1.00E-17	-40.88	0	7880	6.41%	6980.2	5.82%	ATHB23(ZFHD)	A_NTG_S2
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1.00E-17	-40.84	0	2466	2.01%	2012.6	1.68%	MYB118(MYB)	A_NTG_S2
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1.00E-17	-40.78	0	1987	1.62%	1587.8	1.32%	GBF6(bZIP)	A_NTG_S2
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1.00E-17	-40.61	0	13647	11.10%	12401.4	10.34%	DLX1(Homeobox)	A_NTG_S2
"LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer"	RGGTTACTANAGGTCA	1.00E-17	-40.61	0	595	0.48%	398.4	0.33%	"LXRE(NR),DR4"	A_NTG_S2
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1.00E-17	-40.28	0	3267	2.66%	2735.4	2.28%	Foxa3(Forkhead)	A_NTG_S2
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1.00E-17	-39.7	0	5887	4.79%	5139.5	4.29%	NFkB-p65(RHD)	A_NTG_S2
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1.00E-17	-39.48	0	7564	6.15%	6698.2	5.59%	PBX2(Homeobox)	A_NTG_S2
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1.00E-17	-39.27	0	10133	8.25%	9104.2	7.59%	BIM2(bHLH)	A_NTG_S2
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1.00E-17	-39.17	0	5560	4.52%	4841.4	4.04%	c-Myc(bHLH)	A_NTG_S2
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1.00E-16	-38.77	0	19151	15.58%	17650.3	14.72%	KLF5(Zf)	A_NTG_S2
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1.00E-16	-38.67	0	7524	6.12%	6668.9	5.56%	GATA4(C2C2gata)	A_NTG_S2
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1.00E-16	-38.36	0	3151	2.56%	2641.2	2.20%	bZIP68(bZIP)	A_NTG_S2
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1.00E-16	-38.07	0	4623	3.76%	3986.4	3.33%	At1g36060(AP2EREBP)	A_NTG_S2
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1.00E-16	-37.78	0	9212	7.50%	8255.8	6.89%	TBP3(MYBrelated)	A_NTG_S2
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1.00E-16	-36.9	0	483	0.39%	316.1	0.26%	AGL25(MADS)	A_NTG_S2
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1.00E-15	-36.54	0	8081	6.58%	7208.4	6.01%	DEAR2(AP2EREBP)	A_NTG_S2
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1.00E-15	-36.39	0	5004	4.07%	4349.4	3.63%	E-box	A_NTG_S2
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1.00E-15	-36.09	0	24840	20.21%	23128.5	19.29%	AT5G02460(C2C2dof)	A_NTG_S2
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1.00E-15	-35.85	0	2023	1.65%	1641.2	1.37%	ABF2(bZIP)	A_NTG_S2
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1.00E-15	-35.81	0	19159	15.59%	17700.7	14.76%	AT1G28160(AP2EREBP)	A_NTG_S2
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1.00E-15	-35.79	0	10202	8.30%	9206.5	7.68%	FOXA1(Forkhead)	A_NTG_S2
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1.00E-15	-35.75	0	7014	5.71%	6219.1	5.19%	ATHB34(ZFHD)	A_NTG_S2
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1.00E-15	-35.46	0	8964	7.29%	8046.1	6.71%	n-Myc(bHLH)	A_NTG_S2
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1.00E-15	-34.93	0	809	0.66%	589	0.49%	AGL16(MADS)	A_NTG_S2
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1.00E-15	-34.73	0	6462	5.26%	5714.9	4.77%	ATHB24(ZFHD)	A_NTG_S2
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1.00E-14	-34.49	0	2912	2.37%	2447.1	2.04%	Zfp809(Zf)	A_NTG_S2
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1.00E-14	-33.63	0	11588	9.43%	10538.8	8.79%	bHLH80(bHLH)	A_NTG_S2
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1.00E-14	-33.31	0	2513	2.04%	2093.1	1.75%	bZIP16(bZIP)	A_NTG_S2
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1.00E-14	-33.28	0	5370	4.37%	4712.7	3.93%	Klf4(Zf)	A_NTG_S2
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1.00E-14	-32.24	0	1165	0.95%	902	0.75%	ZNF317(Zf)	A_NTG_S2
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1.00E-13	-31.4	0	8353	6.80%	7515.2	6.27%	bHLH130(bHLH)	A_NTG_S2
"Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer"	ATTTGCATAW	1.00E-13	-31	0	4438	3.61%	3868.8	3.23%	"Oct4(POU,Homeobox)"	A_NTG_S2
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1.00E-13	-30.52	0	16847	13.71%	15574.6	12.99%	At5g18450(AP2EREBP)	A_NTG_S2
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1.00E-13	-30.3	0	5276	4.29%	4650.8	3.88%	AT3G10030(Trihelix)	A_NTG_S2
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1.00E-12	-29.81	0	7074	5.76%	6332.5	5.28%	CEJ1(AP2EREBP)	A_NTG_S2
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1.00E-12	-29.47	0	3894	3.17%	3378.1	2.82%	AT1G76870(Trihelix)	A_NTG_S2
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1.00E-12	-29.26	0	6846	5.57%	6124.7	5.11%	ATHB5(HB)	A_NTG_S2
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1.00E-12	-28.84	0	10598	8.62%	9661.3	8.06%	VND6(NAC)	A_NTG_S2
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1.00E-12	-28.78	0	4801	3.91%	4222.6	3.52%	bZIP3(bZIP)	A_NTG_S2
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1.00E-12	-28.65	0	2236	1.82%	1869.2	1.56%	Tcfcp2l1(CP2)	A_NTG_S2
"NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer"	SARTGGAAAAWRTGAGTCAB	1.00E-12	-28.47	0	1789	1.46%	1468.4	1.22%	"NFAT:AP1(RHD,bZIP)"	A_NTG_S2
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1.00E-12	-28.07	0	673	0.55%	493.2	0.41%	NFkB-p65-Rel(RHD)	A_NTG_S2
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1.00E-12	-28.02	0	19850	16.15%	18483.1	15.42%	ANAC046(NAC)	A_NTG_S2
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1.00E-12	-27.89	0	2044	1.66%	1700.1	1.42%	Dorsal(RHD)	A_NTG_S2
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1.00E-12	-27.82	0	2712	2.21%	2306.7	1.92%	ATHB20(Homeobox)	A_NTG_S2
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1.00E-11	-27.58	0	18701	15.22%	17391.7	14.51%	Hoxd12(Homeobox)	A_NTG_S2
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1.00E-11	-27.34	0	23548	19.16%	22040.6	18.38%	ATAF1(NAC)	A_NTG_S2
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1.00E-11	-27.22	0	3119	2.54%	2682.3	2.24%	Tbx20(T-box)	A_NTG_S2
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1.00E-11	-26.81	0	2570	2.09%	2183.9	1.82%	Pit1+1bp(Homeobox)	A_NTG_S2
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1.00E-11	-26.69	0	5971	4.86%	5331.8	4.45%	CHR(?)	A_NTG_S2
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1.00E-11	-26.63	0	2482	2.02%	2104.4	1.76%	DDF1(AP2EREBP)	A_NTG_S2
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1.00E-11	-25.96	0	16755	13.63%	15558.7	12.98%	ERF105(AP2EREBP)	A_NTG_S2
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1.00E-11	-25.62	0	2072	1.69%	1738.4	1.45%	MYB3R1(MYB)	A_NTG_S2
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1.00E-11	-25.6	0	20115	16.37%	18779.4	15.66%	At2g33710(AP2EREBP)	A_NTG_S2
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1.00E-10	-25.27	0	12380	10.07%	11399.9	9.51%	Hoxd10(Homeobox)	A_NTG_S2
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1.00E-10	-25.12	0	3681	3.00%	3215.3	2.68%	DEL2(E2FDP)	A_NTG_S2
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1.00E-10	-24.71	0	4383	3.57%	3869.3	3.23%	SVP(MADS)	A_NTG_S2
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1.00E-10	-24.07	0	10057	8.18%	9211.6	7.68%	NAM(NAC)	A_NTG_S2
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1.00E-10	-23.04	0	4253	3.46%	3763.8	3.14%	STAT5(Stat)	A_NTG_S2
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1.00E-09	-22.98	0	3922	3.19%	3456.1	2.88%	ABI5(bZIP)	A_NTG_S2
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1.00E-09	-22.87	0	1685	1.37%	1404.4	1.17%	REB1	A_NTG_S2
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1.00E-09	-22.8	0	13780	11.21%	12770	10.65%	AT1G71450(AP2EREBP)	A_NTG_S2
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1.00E-09	-22.32	0	4305	3.50%	3818.7	3.19%	Hoxc9(Homeobox)	A_NTG_S2
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1.00E-09	-22.27	0	24622	20.03%	23172.4	19.33%	Ascl1(bHLH)	A_NTG_S2
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1.00E-09	-21.73	0	2309	1.88%	1978.8	1.65%	DMRT1(DM)	A_NTG_S2
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1.00E-09	-21.64	0	19379	15.77%	18147.6	15.14%	CDF3(C2C2dof)	A_NTG_S2
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1.00E-09	-21.53	0	39849	32.42%	37897.4	31.61%	ARF2(ARF)	A_NTG_S2
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1.00E-09	-21.51	0	4211	3.43%	3739	3.12%	Prop1(Homeobox)	A_NTG_S2
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1.00E-09	-21.48	0	18188	14.80%	17008.8	14.19%	ZFX(Zf)	A_NTG_S2
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1.00E-09	-21.39	0	2242	1.82%	1919.1	1.60%	Pho4(bHLH)	A_NTG_S2
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1.00E-09	-20.95	0	11394	9.27%	10526.6	8.78%	ZNF341(Zf)	A_NTG_S2
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1.00E-09	-20.85	0	848	0.69%	668.2	0.56%	AARE(HLH)	A_NTG_S2
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1.00E-09	-20.81	0	12989	10.57%	12048.8	10.05%	AT2G20110(CPP)	A_NTG_S2
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1.00E-09	-20.81	0	2044	1.66%	1742.1	1.45%	At5g65130(AP2EREBP)	A_NTG_S2
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1.00E-09	-20.79	0	1517	1.23%	1264.3	1.05%	ZNF675(Zf)	A_NTG_S2
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1.00E-08	-20.53	0	12915	10.51%	11982.9	9.99%	GRF9(GRF)	A_NTG_S2
"Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer"	GTRGGTCASTGGGTCA	1.00E-08	-20.48	0	1745	1.42%	1472.3	1.23%	"Reverb(NR),DR2"	A_NTG_S2
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1.00E-08	-20.24	0	3916	3.19%	3475.3	2.90%	CES-1(Homeobox)	A_NTG_S2
"ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer"	VAGGTCACNSTGACC	1.00E-08	-20.16	0	3538	2.88%	3124.1	2.61%	"ERE(NR),IR3"	A_NTG_S2
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1.00E-08	-20.03	0	6176	5.03%	5595	4.67%	ZNF7(Zf)	A_NTG_S2
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1.00E-08	-19.95	0	1226	1.00%	1007.4	0.84%	MYB3R4(MYB)	A_NTG_S2
"PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer"	GTCACGCTCSCTGM	1.00E-08	-19.91	0	1325	1.08%	1096	0.91%	"PAX5(Paired,Homeobox),condensed"	A_NTG_S2
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1.00E-08	-19.8	0	5514	4.49%	4975.7	4.15%	ATHB6(Homeobox)	A_NTG_S2
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1.00E-08	-19.66	0	2039	1.66%	1745.8	1.46%	RRTF1(AP2EREBP)	A_NTG_S2
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1.00E-08	-19.6	0	2392	1.95%	2069.9	1.73%	LBD2(LOBAS2)	A_NTG_S2
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1.00E-08	-19.46	0	3980	3.24%	3542.3	2.95%	AtIDD11(C2H2)	A_NTG_S2
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1.00E-08	-19.43	0	1728	1.41%	1463.2	1.22%	bHLH157(bHLH)	A_NTG_S2
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1.00E-08	-19.34	0	8739	7.11%	8027.1	6.70%	SMB(NAC)	A_NTG_S2
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1.00E-08	-19.12	0	2732	2.22%	2386.3	1.99%	MafF(bZIP)	A_NTG_S2
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1.00E-08	-19.05	0	8703	7.08%	7997.5	6.67%	VND2(NAC)	A_NTG_S2
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1.00E-08	-19.02	0	1063	0.86%	866.5	0.72%	SPL14(SBP)	A_NTG_S2
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1.00E-08	-18.86	0	2487	2.02%	2162.1	1.80%	Phox2a(Homeobox)	A_NTG_S2
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1.00E-08	-18.85	0	7703	6.27%	7052.9	5.88%	ANAC071(NAC)	A_NTG_S2
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1.00E-08	-18.63	0	35065	28.53%	33339.4	27.81%	OBP3(C2C2dof)	A_NTG_S2
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1.00E-08	-18.54	0	249	0.20%	166.2	0.14%	EBNA1(EBV-virus)	A_NTG_S2
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1.00E-07	-18.4	0	6853	5.58%	6254.7	5.22%	HAT2(Homeobox)	A_NTG_S2
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1.00E-07	-18.32	0	1039	0.85%	848.8	0.71%	ZSCAN22(Zf)	A_NTG_S2
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1.00E-07	-18.17	0	11047	8.99%	10240.3	8.54%	FOXM1(Forkhead)	A_NTG_S2
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1.00E-07	-18.08	0	4891	3.98%	4409.1	3.68%	ZNF143|STAF(Zf)	A_NTG_S2
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1.00E-07	-18.05	0	6974	5.67%	6373.1	5.32%	MYB116(MYB)	A_NTG_S2
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1.00E-07	-17.65	0	4904	3.99%	4426.2	3.69%	LMI1(HB)	A_NTG_S2
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1.00E-07	-17.61	0	1838	1.50%	1575.6	1.31%	O2(bZIP)	A_NTG_S2
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1.00E-07	-17.41	0	7115	5.79%	6515.3	5.43%	PRDM1(Zf)	A_NTG_S2
"RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer"	GGGRAARRGRMCAGMTG	1.00E-07	-17.39	0	4623	3.76%	4165.6	3.47%	"RBPJ:Ebox(?,bHLH)"	A_NTG_S2
"FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer"	AGGTCANTGACCTB	1.00E-07	-17.24	0	4683	3.81%	4223.1	3.52%	"FXR(NR),IR1"	A_NTG_S2
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1.00E-07	-17.13	0	503	0.41%	382.6	0.32%	MYB3R5(MYB)	A_NTG_S2
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1.00E-07	-16.97	0	3063	2.49%	2711.5	2.26%	Brachyury(T-box)	A_NTG_S2
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1.00E-07	-16.97	0	306	0.25%	216	0.18%	AGL13(MADS)	A_NTG_S2
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1.00E-07	-16.81	0	22867	18.61%	21604.9	18.02%	ANAC038(NAC)	A_NTG_S2
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1.00E-07	-16.78	0	2931	2.38%	2590.6	2.16%	At5g66730(C2H2)	A_NTG_S2
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1.00E-07	-16.75	0	1861	1.51%	1602.7	1.34%	Twist(bHLH)	A_NTG_S2
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1.00E-07	-16.44	0	8583	6.98%	7922.6	6.61%	Max(bHLH)	A_NTG_S2
"GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer"	CRGCTGBNGNSNNSAGATAA	1.00E-07	-16.43	0	1244	1.01%	1043	0.87%	"GATA:SCL(Zf,bHLH)"	A_NTG_S2
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1.00E-07	-16.41	0	7733	6.29%	7115.3	5.93%	MYB56(MYB)	A_NTG_S2
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1.00E-07	-16.32	0	4457	3.63%	4021.7	3.35%	ZNF322(Zf)	A_NTG_S2
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1.00E-07	-16.31	0	13911	11.32%	13010.4	10.85%	TATA-Box(TBP)	A_NTG_S2
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1.00E-07	-16.27	0	2076	1.69%	1803.3	1.50%	AT3G16280(AP2EREBP)	A_NTG_S2
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1.00E-07	-16.17	0	10394	8.46%	9651.1	8.05%	KANADI1(Myb)	A_NTG_S2
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1.00E-06	-15.97	0	1699	1.38%	1459	1.22%	bHLH10(bHLH)	A_NTG_S2
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1.00E-06	-15.83	0	1628	1.32%	1396	1.16%	bHLH28(bHLH)	A_NTG_S2
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1.00E-06	-15.57	0	4022	3.27%	3621.5	3.02%	IDD7(C2H2)	A_NTG_S2
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1.00E-06	-15.31	0	6044	4.92%	5530.3	4.61%	GATA12(C2C2gata)	A_NTG_S2
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1.00E-06	-15.09	0	459	0.37%	351.7	0.29%	ZNF768(Zf)	A_NTG_S2
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1.00E-06	-14.83	0	1359	1.11%	1156.4	0.96%	GATA6(C2C2gata)	A_NTG_S2
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1.00E-06	-14.76	0	424	0.35%	322.1	0.27%	ZBTB33(Zf)	A_NTG_S2
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1.00E-06	-14.69	0	16376	13.32%	15408.9	12.85%	Knotted(Homeobox)	A_NTG_S2
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1.00E-06	-14.35	0	4981	4.05%	4538.6	3.79%	At4g16750(AP2EREBP)	A_NTG_S2
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1.00E-06	-14.32	0	11201	9.11%	10455.8	8.72%	Replumless(BLH)	A_NTG_S2
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1.00E-06	-14.25	0	14416	11.73%	13536.7	11.29%	AP-2gamma(AP2)	A_NTG_S2
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1.00E-06	-14.12	0	6321	5.14%	5809.1	4.85%	AT3G25990(Trihelix)	A_NTG_S2
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1.00E-06	-14.08	0	793	0.65%	649.8	0.54%	Unknown4	A_NTG_S2
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1.00E-06	-14.06	0	1547	1.26%	1333.2	1.11%	TINY(AP2EREBP)	A_NTG_S2
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1.00E-06	-13.84	0	4618	3.76%	4202.4	3.51%	GATA11(C2C2gata)	A_NTG_S2
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1.00E-06	-13.83	0	6580	5.35%	6059.7	5.05%	E2F6(E2F)	A_NTG_S2
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1.00E-05	-13.52	0	1172	0.95%	994.8	0.83%	Phox2b(Homeobox)	A_NTG_S2
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1.00E-05	-13.47	0	23737	19.31%	22528.9	18.79%	Meis1(Homeobox)	A_NTG_S2
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1.00E-05	-13.17	0	1242	1.01%	1060.9	0.88%	CEBP:CEBP(bZIP)	A_NTG_S2
"Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer"	ATATGCAAAT	1.00E-05	-13.1	0	2599	2.11%	2315.4	1.93%	"Oct2(POU,Homeobox)"	A_NTG_S2
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1.00E-05	-12.97	0	23149	18.84%	21974.7	18.33%	SPL9(SBP)	A_NTG_S2
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1.00E-05	-12.9	0	9794	7.97%	9137.4	7.62%	ATHB25(ZFHD)	A_NTG_S2
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1.00E-05	-12.82	0	637	0.52%	516.7	0.43%	SPL13(SBP)	A_NTG_S2
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1.00E-05	-12.71	0	9357	7.61%	8723.8	7.28%	TEAD4(TEA)	A_NTG_S2
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1.00E-05	-12.64	0	1665	1.35%	1452.5	1.21%	AT3G60490(AP2EREBP)	A_NTG_S2
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1.00E-05	-12.55	0	6842	5.57%	6328.8	5.28%	ANAC057(NAC)	A_NTG_S2
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1.00E-05	-12.49	0	3726	3.03%	3378.8	2.82%	GATA1(C2C2gata)	A_NTG_S2
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1.00E-05	-12.36	0	2348	1.91%	2088.7	1.74%	HOXA1(Homeobox)	A_NTG_S2
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1.00E-05	-12.13	0	3476	2.83%	3147.7	2.63%	AT1G12630(AP2EREBP)	A_NTG_S2
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1.00E-05	-12.09	0	5428	4.42%	4992.5	4.16%	AT2G15740(C2H2)	A_NTG_S2
"Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer"	GTCATGCHTGRCTGS	1.00E-05	-12.08	0	4858	3.95%	4452.5	3.71%	"Pax8(Paired,Homeobox)"	A_NTG_S2
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1.00E-05	-12.06	0	331	0.27%	251.5	0.21%	ZNF382(Zf)	A_NTG_S2
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1.00E-05	-11.7	0	311	0.25%	235.6	0.20%	SPL3(SBP)	A_NTG_S2
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1.00E-05	-11.68	0	13573	11.04%	12784.8	10.66%	ERF13(AP2EREBP)	A_NTG_S2
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1.00E-05	-11.65	0	9730	7.92%	9100.8	7.59%	bHLH122(bHLH)	A_NTG_S2
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1.00E-05	-11.65	0	758	0.62%	630.8	0.53%	Unknown1	A_NTG_S2
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1.00E-05	-11.52	0	1078	0.88%	921.3	0.77%	HAT1(Homeobox)	A_NTG_S2
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1.00E-04	-11.49	0	10227	8.32%	9579.4	7.99%	ANAC070(NAC)	A_NTG_S2
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1.00E-04	-11.39	0	5318	4.33%	4898.7	4.09%	NTM1(NAC)	A_NTG_S2
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1.00E-04	-11.35	0	2422	1.97%	2168	1.81%	HRE(HSF)	A_NTG_S2
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1.00E-04	-11.25	0	5360	4.36%	4940.3	4.12%	MYB105(MYB)	A_NTG_S2
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1.00E-04	-11.2	0	1174	0.96%	1011.5	0.84%	HDG7(HB)	A_NTG_S2
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1.00E-04	-11.19	0	3815	3.10%	3478.1	2.90%	CAMTA1(CAMTA)	A_NTG_S2
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1.00E-04	-10.99	0	3129	2.55%	2835	2.36%	At4g36780(BZR)	A_NTG_S2
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1.00E-04	-10.98	0	6507	5.29%	6035.1	5.03%	Unknown6	A_NTG_S2
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1.00E-04	-10.84	0	557	0.45%	454	0.38%	GATA19(C2C2gata)	A_NTG_S2
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1.00E-04	-10.83	0	443	0.36%	354	0.30%	dHNF4(NR)	A_NTG_S2
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1.00E-04	-10.74	0	999	0.81%	854.4	0.71%	TSO1(CPP)	A_NTG_S2
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1.00E-04	-10.72	0	1228	1.00%	1064.5	0.89%	At2g44940(AP2EREBP)	A_NTG_S2
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1.00E-04	-10.35	1.00E-04	38037	30.95%	36476.3	30.42%	Zac1(Zf)	A_NTG_S2
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1.00E-04	-9.938	1.00E-04	7149	5.82%	6666.7	5.56%	VND1(NAC)	A_NTG_S2
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1.00E-04	-9.89	1.00E-04	17877	14.55%	16974.7	14.16%	Unknown2	A_NTG_S2
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1.00E-04	-9.863	1.00E-04	15051	12.25%	14251.4	11.89%	AT5G05550(Trihelix)	A_NTG_S2
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1.00E-04	-9.722	1.00E-04	6037	4.91%	5609.4	4.68%	PRDM9(Zf)	A_NTG_S2
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1.00E-04	-9.469	2.00E-04	2180	1.77%	1960.5	1.64%	MYNN(Zf)	A_NTG_S2
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1.00E-04	-9.377	2.00E-04	15358	12.50%	14561	12.15%	EAR2(NR)	A_NTG_S2
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1.00E-04	-9.325	2.00E-04	3103	2.52%	2830.5	2.36%	CArG(MADS)	A_NTG_S2
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1.00E-04	-9.226	2.00E-04	1116	0.91%	972.1	0.81%	ATHB18(Homeobox)	A_NTG_S2
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	0.001	-9.203	2.00E-04	16748	13.63%	15905.2	13.27%	COUP-TFII(NR)	A_NTG_S2
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	0.001	-8.998	3.00E-04	1610	1.31%	1432.1	1.19%	Nur77(NR)	A_NTG_S2
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	0.001	-8.99	3.00E-04	3818	3.11%	3511.7	2.93%	Rap210(AP2EREBP)	A_NTG_S2
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	0.001	-8.764	3.00E-04	1825	1.48%	1636	1.36%	ABF1	A_NTG_S2
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	0.001	-8.663	4.00E-04	6668	5.43%	6232	5.20%	ANAC028(NAC)	A_NTG_S2
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	0.001	-8.502	4.00E-04	5109	4.16%	4746.3	3.96%	ANAC005(NAC)	A_NTG_S2
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	0.001	-8.303	5.00E-04	8156	6.64%	7663.7	6.39%	Npas4(bHLH)	A_NTG_S2
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	0.001	-8.246	5.00E-04	9545	7.77%	8997.8	7.51%	ATHB6(Homeobox)	A_NTG_S2
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	0.001	-8.202	6.00E-04	214	0.17%	163.3	0.14%	T1ISRE(IRF)	A_NTG_S2
SeqBias: polyC-repeat	CCCCCCCCCC	0.001	-8.174	6.00E-04	122617	99.77%	119556.2	99.72%	SeqBias: polyC-repeat	A_NTG_S2
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	0.001	-7.903	8.00E-04	937	0.76%	817.8	0.68%	HOXA2(Homeobox)	A_NTG_S2
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	0.001	-7.796	8.00E-04	2910	2.37%	2668.3	2.23%	ERF38(AP2EREBP)	A_NTG_S2
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	0.001	-7.796	8.00E-04	4735	3.85%	4402.7	3.67%	At2g41835(C2H2)	A_NTG_S2
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	0.001	-7.785	8.00E-04	5347	4.35%	4986.8	4.16%	ANAC047(NAC)	A_NTG_S2
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	0.001	-7.716	9.00E-04	5914	4.81%	5529.7	4.61%	HOXA9(Homeobox)	A_NTG_S2
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	0.001	-7.685	9.00E-04	2200	1.79%	1999.9	1.67%	Srebp1a(bHLH)	A_NTG_S2
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	0.001	-7.674	9.00E-04	629	0.51%	536	0.45%	CDM1(C3H)	A_NTG_S2
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	0.001	-7.557	0.0011	6356	5.17%	5955.4	4.97%	c-Myc(bHLH)	A_NTG_S2
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	0.001	-7.535	0.0011	3464	2.82%	3197.1	2.67%	STAT1(Stat)	A_NTG_S2
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	0.001	-7.456	0.0012	7601	6.18%	7150.2	5.96%	NST1(NAC)	A_NTG_S2
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	0.001	-7.339	0.0013	8918	7.26%	8417.6	7.02%	DPL-1(E2F)	A_NTG_S2
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	0.001	-7.269	0.0014	4020	3.27%	3730.3	3.11%	ANL2(HB)	A_NTG_S2
"bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer"	NAGTTTCABTHTGACTNW	0.001	-7.249	0.0014	5174	4.21%	4831.5	4.03%	"bZIP:IRF(bZIP,IRF)"	A_NTG_S2
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	0.001	-7.15	0.0016	5856	4.76%	5485.7	4.58%	ATHB40(HB)	A_NTG_S2
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	0.001	-7.06	0.0017	7458	6.07%	7022.4	5.86%	Arnt:Ahr(bHLH)	A_NTG_S2
"PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer"	TGACCTTTGCCCCA	0.001	-7.033	0.0017	11538	9.39%	10946.3	9.13%	"PPARE(NR),DR1"	A_NTG_S2
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	0.001	-7.023	0.0018	1496	1.22%	1345.7	1.12%	AT3G58630(Trihelix)	A_NTG_S2
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	0.001	-6.996	0.0018	1999	1.63%	1818.3	1.52%	DMRT6(DM)	A_NTG_S2
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	0.001	-6.939	0.0019	2742	2.23%	2521.1	2.10%	SPL5(SBP)	A_NTG_S2
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	0.001	-6.924	0.0019	7787	6.34%	7341.7	6.12%	ANAC016(NAC)	A_NTG_S2
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	0.01	-6.847	0.0021	196	0.16%	152.2	0.13%	bZIP44(bZIP)	A_NTG_S2
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	0.01	-6.78	0.0022	8692	7.07%	8214.3	6.85%	LBD13(LOBAS2)	A_NTG_S2
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	0.01	-6.764	0.0023	22532	18.33%	21579.4	18.00%	dof24(C2C2dof)	A_NTG_S2
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	0.01	-6.716	0.0024	4033	3.28%	3752.3	3.13%	ANAC013(NAC)	A_NTG_S2
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	0.01	-6.603	0.0026	1439	1.17%	1296.5	1.08%	GT3a(Trihelix)	A_NTG_S2
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	0.01	-6.573	0.0027	1509	1.23%	1362.1	1.14%	Srebp2(bHLH)	A_NTG_S2
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	0.01	-6.505	0.0029	2887	2.35%	2665.7	2.22%	EMB1789(C3H)	A_NTG_S2
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	0.01	-6.469	0.003	6373	5.19%	5995.8	5.00%	NAC2(NAC)	A_NTG_S2
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	0.01	-6.385	0.0033	899	0.73%	794	0.66%	DEAR5(AP2EREBP)	A_NTG_S2
"GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer"	NNNNNBAGATAWYATCTVHN	0.01	-6.347	0.0034	1167	0.95%	1044.7	0.87%	"GATA(Zf),IR3"	A_NTG_S2
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	0.01	-6.215	0.0038	9382	7.63%	8893.3	7.42%	Egr1(Zf)	A_NTG_S2
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	0.01	-6.161	0.0041	1211	0.99%	1087.3	0.91%	E2F7(E2F)	A_NTG_S2
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	0.01	-6.075	0.0044	7692	6.26%	7271.2	6.06%	RKD2(RWPRK)	A_NTG_S2
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	0.01	-6.056	0.0045	4485	3.65%	4196.4	3.50%	Zfp57(Zf)	A_NTG_S2
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	0.01	-5.963	0.0049	1767	1.44%	1612.9	1.35%	JKD(C2H2)	A_NTG_S2
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	0.01	-5.885	0.0053	2364	1.92%	2178.8	1.82%	MGP(C2H2)	A_NTG_S2
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	0.01	-5.837	0.0055	2817	2.29%	2609.5	2.18%	At1g22810(AP2EREBP)	A_NTG_S2
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	0.01	-5.821	0.0056	25951	21.12%	24933.6	20.80%	ZNF711(Zf)	A_NTG_S2
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	0.01	-5.768	0.0059	25631	20.86%	24626	20.54%	Nkx2.2(Homeobox)	A_NTG_S2
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	0.01	-5.682	0.0064	3839	3.12%	3586.3	2.99%	HDG1(Homeobox)	A_NTG_S2
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	0.01	-5.64	0.0067	2029	1.65%	1864.9	1.56%	NRF1(NRF)	A_NTG_S2
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	0.01	-5.507	0.0076	5	0.00%	0	0.00%	REM16(ABI3VP1)	A_NTG_S2
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	0.01	-5.334	0.0091	541	0.44%	471.7	0.39%	HSFA6A(HSF)	A_NTG_S2
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	0.01	-5.258	0.0098	1903	1.55%	1750.2	1.46%	DEAR3(AP2EREBP)	A_NTG_S2
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	0.01	-5.196	0.0104	12143	9.88%	11588.9	9.67%	RAP26(AP2EREBP)	A_NTG_S2
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	0.01	-5.123	0.0111	15452	12.57%	14790.8	12.34%	At1g64620(C2C2dof)	A_NTG_S2
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	0.01	-5.112	0.0112	412	0.34%	355	0.30%	WRKY46(WRKY)	A_NTG_S2
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	0.01	-5.075	0.0116	20108	16.36%	19301.1	16.10%	ASL18(LOBAS2)	A_NTG_S2
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	0.01	-5.014	0.0124	6185	5.03%	5850.7	4.88%	VND3(NAC)	A_NTG_S2
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	0.01	-4.98	0.0128	3246	2.64%	3033.7	2.53%	ZNF519(Zf)	A_NTG_S2
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	0.01	-4.958	0.013	6094	4.96%	5764.1	4.81%	ANAC096(NAC)	A_NTG_S2
"NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer"	GGGGGAATCCCC	0.01	-4.949	0.0131	1230	1.00%	1118.5	0.93%	"NFkB-p50,p52(RHD)"	A_NTG_S2
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	0.01	-4.843	0.0145	982	0.80%	886.7	0.74%	RAP21(AP2EREBP)	A_NTG_S2
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	0.01	-4.829	0.0147	26002	21.16%	25030.8	20.88%	AT2G28810(C2C2dof)	A_NTG_S2
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	0.01	-4.807	0.015	15287	12.44%	14643.5	12.21%	AT2G40260(G2like)	A_NTG_S2
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	0.01	-4.718	0.0164	37823	30.78%	36524.7	30.46%	At3g24120(G2like)	A_NTG_S2
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	0.01	-4.709	0.0165	35	0.03%	22.1	0.02%	Unknown2	A_NTG_S2
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	0.01	-4.621	0.018	2175	1.77%	2019	1.68%	At4g28140(AP2EREBP)	A_NTG_S2
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	0.1	-4.553	0.0192	2431	1.98%	2263.1	1.89%	At4g31060(AP2EREBP)	A_NTG_S2
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	0.1	-4.519	0.0199	3294	2.68%	3088.7	2.58%	ATHB53(HB)	A_NTG_S2
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	0.1	-4.458	0.0211	869	0.71%	784.7	0.65%	HNF1b(Homeobox)	A_NTG_S2
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	0.1	-4.321	0.0241	4591	3.74%	4336.2	3.62%	At1g76110(ARID)	A_NTG_S2
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	0.1	-4.238	0.0262	3056	2.49%	2866.7	2.39%	At1g78700(BZR)	A_NTG_S2
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	0.1	-4.225	0.0265	5483	4.46%	5196.5	4.33%	ATHB7(Homeobox)	A_NTG_S2
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	0.1	-4.156	0.0283	10297	8.38%	9842.1	8.21%	Six2(Homeobox)	A_NTG_S2
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	0.1	-4.154	0.0283	4140	3.37%	3907.1	3.26%	GBF3(bZIP)	A_NTG_S2
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	0.1	-3.991	0.0332	4266	3.47%	4032.7	3.36%	MYB113(MYB)	A_NTG_S2
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	0.1	-3.922	0.0356	54	0.04%	40	0.03%	LIN-15B(Zf)	A_NTG_S2
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	0.1	-3.9	0.0363	4274	3.48%	4042.6	3.37%	AIL7(AP2EREBP)	A_NTG_S2
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	0.1	-3.898	0.0363	7778	6.33%	7418.5	6.19%	LEF1(HMG)	A_NTG_S2
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	0.1	-3.742	0.0424	208	0.17%	176.6	0.15%	EFL-1(E2F)	A_NTG_S2
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	0.1	-3.577	0.0499	6539	5.32%	6233.4	5.20%	SPL11(SBP)	A_NTG_S2
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	0	-28860	0	19181	13.53%	1783.3	1.29%	CTCF(Zf)	A_NTG_S3
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	0	-22360	0	20030	14.13%	2881.1	2.08%	BORIS(Zf)	A_NTG_S3
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	0	-5301	0	9747	6.88%	2766.8	2.00%	SpiB(ETS)	A_NTG_S3
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	0	-5153	0	17010	12.00%	7043.8	5.10%	PU.1(ETS)	A_NTG_S3
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	0	-3688	0	20435	14.41%	10610.7	7.68%	ELF5(ETS)	A_NTG_S3
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	0	-3610	0	27134	19.14%	15729.8	11.38%	Elf4(ETS)	A_NTG_S3
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	0	-3500	0	26141	18.44%	15100.4	10.92%	ETS1(ETS)	A_NTG_S3
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	0	-3475	0	12669	8.94%	5454.2	3.95%	NF1(CTF)	A_NTG_S3
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	0	-3054	0	18966	13.38%	10215.4	7.39%	ELF3(ETS)	A_NTG_S3
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	0	-3025	0	22872	16.13%	13187.8	9.54%	Etv2(ETS)	A_NTG_S3
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	0	-2816	0	22793	16.08%	13399.8	9.69%	GABPA(ETS)	A_NTG_S3
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	0	-2814	0	34982	24.68%	23260.7	16.83%	ERG(ETS)	A_NTG_S3
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	0	-2558	0	40107	28.29%	28100.9	20.33%	NF1-halfsite(CTF)	A_NTG_S3
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	0	-2439	0	28762	20.29%	18741.2	13.56%	EHF(ETS)	A_NTG_S3
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	0	-2437	0	26276	18.53%	16717.7	12.09%	Fli1(ETS)	A_NTG_S3
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	0	-2358	0	9128	6.44%	4012.5	2.90%	Ets1-distal(ETS)	A_NTG_S3
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	0	-2084	0	31869	22.48%	21988.1	15.91%	ETV1(ETS)	A_NTG_S3
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	0	-2084	0	5883	4.15%	2188.2	1.58%	PU.1:IRF8(ETS:IRF)	A_NTG_S3
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	0	-1929	0	30854	21.76%	21438.5	15.51%	Sox10(HMG)	A_NTG_S3
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	0	-1927	0	8202	5.79%	3753.8	2.72%	IRF8(IRF)	A_NTG_S3
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	0	-1900	0	13335	9.41%	7401.8	5.35%	ELF1(ETS)	A_NTG_S3
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	0	-1864	0	31910	22.51%	22476	16.26%	Sox3(HMG)	A_NTG_S3
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	0	-1733	0	15284	10.78%	9094.8	6.58%	EWS:ERG-fusion(ETS)	A_NTG_S3
ETS(ETS)/Promoter/Homer	AACCGGAAGT	0	-1685	0	9196	6.49%	4654.5	3.37%	ETS(ETS)	A_NTG_S3
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	0	-1523	0	25859	18.24%	18054.5	13.06%	PU.1-IRF(ETS:IRF)	A_NTG_S3
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	0	-1485	0	16917	11.93%	10761.2	7.78%	Sox4(HMG)	A_NTG_S3
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	0	-1473	0	19532	13.78%	12894.4	9.33%	Sox15(HMG)	A_NTG_S3
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	0	-1466	0	27354	19.30%	19451.3	14.07%	Sox6(HMG)	A_NTG_S3
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	0	-1450	0	12165	8.58%	7107.1	5.14%	Tlx?(NR)	A_NTG_S3
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	0	-1445	0	32175	22.70%	23664.6	17.12%	Sox21(HMG)	A_NTG_S3
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	0	-1437	0	25409	17.92%	17859.7	12.92%	ETV4(ETS)	A_NTG_S3
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	0	-1419	0	17234	12.16%	11129	8.05%	Sox2(HMG)	A_NTG_S3
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	0	-1376	0	17939	12.65%	11776.6	8.52%	Sox9(HMG)	A_NTG_S3
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	0	-1236	0	1328	0.94%	225.7	0.16%	CTCF-SatelliteElement(Zf?)	A_NTG_S3
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	0	-1187	0	44313	31.26%	35254.4	25.50%	HIC1(Zf)	A_NTG_S3
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	0	-1184	0	13479	9.51%	8533.2	6.17%	Sox17(HMG)	A_NTG_S3
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	0	-1115	0	8268	5.83%	4631.7	3.35%	NFIL3(bZIP)	A_NTG_S3
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	0	-1057	0	6130	4.32%	3156.6	2.28%	CREB5(bZIP)	A_NTG_S3
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	0	-1027	0	6436	4.54%	3405.2	2.46%	IRF3(IRF)	A_NTG_S3
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	0	-934.2	0	2526	1.78%	911.1	0.66%	RFX(HTH)	A_NTG_S3
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	0	-921.6	0	2708	1.91%	1024.4	0.74%	Rfx2(HTH)	A_NTG_S3
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	0	-915.5	0	12462	8.79%	8201.4	5.93%	EWS:FLI1-fusion(ETS)	A_NTG_S3
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	0	-811.8	0	7740	5.46%	4654.9	3.37%	Atf7(bZIP)	A_NTG_S3
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	0	-805.8	0	14340	10.12%	9968.4	7.21%	Bcl11a(Zf)	A_NTG_S3
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	0	-785.8	0	20044	14.14%	14859.7	10.75%	SPDEF(ETS)	A_NTG_S3
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	0	-784.9	0	11792	8.32%	7914.1	5.72%	Elk4(ETS)	A_NTG_S3
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	0	-778.9	0	5789	4.08%	3234.7	2.34%	Atf2(bZIP)	A_NTG_S3
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	0	-748.6	0	10050	7.09%	6576.9	4.76%	Atf1(bZIP)	A_NTG_S3
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	9.88131291682493e-323	-743.1	0	5275	3.72%	2903.3	2.10%	c-Jun-CRE(bZIP)	A_NTG_S3
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	9.98012604599318e-322	-739.7	0	9149	6.45%	5873.2	4.25%	Fos(bZIP)	A_NTG_S3
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1.00E-307	-708.6	0	8693	6.13%	5567.4	4.03%	Fra1(bZIP)	A_NTG_S3
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1.00E-302	-697.1	0	16966	11.97%	12454.7	9.01%	NeuroD1(bHLH)	A_NTG_S3
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1.00E-302	-695.7	0	20327	14.34%	15363.5	11.11%	Sp5(Zf)	A_NTG_S3
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1.00E-291	-672.2	0	5888	4.15%	3452.7	2.50%	Fosl2(bZIP)	A_NTG_S3
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1.00E-291	-671.4	0	10308	7.27%	6937.8	5.02%	Atf3(bZIP)	A_NTG_S3
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1.00E-290	-668.4	0	2122	1.50%	836.9	0.61%	RORg(NR)	A_NTG_S3
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1.00E-289	-665.6	0	3194	2.25%	1524.4	1.10%	IRF1(IRF)	A_NTG_S3
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1.00E-287	-661	0	8718	6.15%	5674.7	4.10%	JunB(bZIP)	A_NTG_S3
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1.00E-284	-656	0	12320	8.69%	8629.5	6.24%	Elk1(ETS)	A_NTG_S3
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1.00E-279	-644.3	0	7800	5.50%	4975.2	3.60%	Fra2(bZIP)	A_NTG_S3
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1.00E-277	-639.3	0	11636	8.21%	8100	5.86%	AP-1(bZIP)	A_NTG_S3
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1.00E-274	-632.8	0	2769	1.95%	1271.6	0.92%	Mef2d(MADS)	A_NTG_S3
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1.00E-273	-629.9	0	12587	8.88%	8914.5	6.45%	Zic3(Zf)	A_NTG_S3
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1.00E-272	-627.8	0	6036	4.26%	3630.1	2.63%	Sox7(HMG)	A_NTG_S3
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1.00E-268	-619.2	0	1905	1.34%	738.6	0.53%	JunD(bZIP)	A_NTG_S3
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1.00E-266	-613.7	0	6360	4.49%	3901.2	2.82%	Sp1(Zf)	A_NTG_S3
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1.00E-265	-611.9	0	2737	1.93%	1268.8	0.92%	X-box(HTH)	A_NTG_S3
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1.00E-263	-606	0	5267	3.72%	3079	2.23%	Mef2c(MADS)	A_NTG_S3
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1.00E-263	-605.7	0	4402	3.11%	2438.8	1.76%	Jun-AP1(bZIP)	A_NTG_S3
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1.00E-249	-575.4	0	10915	7.70%	7648.8	5.53%	THRb(NR)	A_NTG_S3
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1.00E-245	-566.4	0	12271	8.66%	8806.1	6.37%	Unknown-ESC-element(?)	A_NTG_S3
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1.00E-244	-563.4	0	80327	56.66%	72210.1	52.23%	At3g60580(C2H2)	A_NTG_S3
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1.00E-244	-562.8	0	20816	14.68%	16216	11.73%	Tcf12(bHLH)	A_NTG_S3
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1.00E-243	-560	0	4538	3.20%	2598.6	1.88%	Rfx1(HTH)	A_NTG_S3
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1.00E-242	-559.5	0	10128	7.14%	7032.4	5.09%	BATF(bZIP)	A_NTG_S3
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1.00E-235	-541.9	0	580	0.41%	98.1	0.07%	REST-NRSF(Zf)	A_NTG_S3
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1.00E-234	-540	0	1747	1.23%	695.6	0.50%	TGA5(bZIP)	A_NTG_S3
"ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer"	RCAGGATGTGGT	1.00E-233	-537.2	0	2310	1.63%	1052	0.76%	"ETS:RUNX(ETS,Runt)"	A_NTG_S3
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1.00E-232	-535.2	0	25293	17.84%	20311.3	14.69%	Ap4(bHLH)	A_NTG_S3
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1.00E-231	-532.7	0	2867	2.02%	1430.9	1.04%	RORa(NR)	A_NTG_S3
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1.00E-229	-527.4	0	87238	61.54%	79224.3	57.31%	AZF1(C2H2)	A_NTG_S3
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1.00E-225	-519.3	0	2511	1.77%	1201.7	0.87%	IRF2(IRF)	A_NTG_S3
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1.00E-224	-516.5	0	2830	2.00%	1421.5	1.03%	RORgt(NR)	A_NTG_S3
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1.00E-224	-516.5	0	2830	2.00%	1421.5	1.03%	RORgt(NR)	A_NTG_S3
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1.00E-221	-511.1	0	82110	57.92%	74256.2	53.71%	SCL(bHLH)	A_NTG_S3
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1.00E-220	-508.4	0	7445	5.25%	4949	3.58%	TGA6(bZIP)	A_NTG_S3
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1.00E-213	-492.1	0	12094	8.53%	8852.5	6.40%	bZIP50(bZIP)	A_NTG_S3
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1.00E-207	-478.9	0	53460	37.71%	46733.9	33.81%	Tgif2(Homeobox)	A_NTG_S3
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1.00E-207	-478	0	5423	3.83%	3398.6	2.46%	Usf2(bHLH)	A_NTG_S3
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1.00E-207	-478	0	10100	7.12%	7204	5.21%	HLF(bZIP)	A_NTG_S3
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1.00E-206	-474.7	0	22073	15.57%	17655.5	12.77%	Atoh1(bHLH)	A_NTG_S3
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1.00E-205	-472.1	0	27584	19.46%	22643.3	16.38%	Sp2(Zf)	A_NTG_S3
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1.00E-203	-468.8	0	5739	4.05%	3662.8	2.65%	TGA1(bZIP)	A_NTG_S3
"GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer"	VAGRACAKWCTGTYC	1.00E-202	-467.4	0	4631	3.27%	2803.2	2.03%	"GRE(NR),IR3"	A_NTG_S3
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1.00E-195	-450.7	0	20349	14.35%	16206.8	11.72%	Rfx6(HTH)	A_NTG_S3
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1.00E-192	-443.4	0	3797	2.68%	2207.4	1.60%	Bach2(bZIP)	A_NTG_S3
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1.00E-192	-442.8	0	1191	0.84%	428.4	0.31%	TGA3(bZIP)	A_NTG_S3
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1.00E-189	-436.9	0	4129	2.91%	2467.2	1.78%	PGR(NR)	A_NTG_S3
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1.00E-189	-436.8	0	28582	20.16%	23711.2	17.15%	NeuroG2(bHLH)	A_NTG_S3
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1.00E-187	-432.6	0	15119	10.66%	11646.4	8.42%	MITF(bHLH)	A_NTG_S3
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1.00E-186	-430	0	5224	3.68%	3326.5	2.41%	Mef2a(MADS)	A_NTG_S3
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1.00E-186	-429.3	0	19598	13.82%	15618.3	11.30%	Tcf21(bHLH)	A_NTG_S3
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1.00E-183	-423.6	0	10020	7.07%	7278.9	5.27%	Mef2b(MADS)	A_NTG_S3
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1.00E-174	-402.6	0	26692	18.83%	22142.1	16.02%	BHLHA15(bHLH)	A_NTG_S3
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1.00E-174	-401.4	0	25547	18.02%	21103.5	15.27%	bZIP52(bZIP)	A_NTG_S3
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1.00E-171	-393.9	0	7146	5.04%	4950.7	3.58%	TGA10(bZIP)	A_NTG_S3
"GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer"	NRGVACABNVTGTYCY	1.00E-157	-363.8	0	2896	2.04%	1647.4	1.19%	"GRE(NR),IR3"	A_NTG_S3
SeqBias: GA-repeat	GAGAGAGAGA	1.00E-157	-362.2	0	99344	70.08%	92287.1	66.76%	SeqBias: GA-repeat	A_NTG_S3
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1.00E-155	-359	0	6743	4.76%	4699.5	3.40%	Rfx5(HTH)	A_NTG_S3
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1.00E-153	-352.6	0	30984	21.86%	26339.5	19.05%	Foxo1(Forkhead)	A_NTG_S3
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1.00E-149	-344.5	0	3947	2.78%	2476.9	1.79%	TGA4(bZIP)	A_NTG_S3
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1.00E-143	-330.9	0	12054	8.50%	9312	6.74%	RUNX(Runt)	A_NTG_S3
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1.00E-143	-330.2	0	34003	23.99%	29269	21.17%	Olig2(bHLH)	A_NTG_S3
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1.00E-139	-321.4	0	9775	6.90%	7365.2	5.33%	KLF3(Zf)	A_NTG_S3
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1.00E-134	-309.9	0	11757	8.29%	9126.1	6.60%	RUNX-AML(Runt)	A_NTG_S3
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1.00E-134	-309.1	0	17009	12.00%	13791.8	9.98%	KLF1(Zf)	A_NTG_S3
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1.00E-134	-308.7	0	14783	10.43%	11803.6	8.54%	TGA9(bZIP)	A_NTG_S3
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1.00E-131	-302.5	0	28275	19.94%	24107.3	17.44%	TCF4(bHLH)	A_NTG_S3
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1.00E-130	-299.5	0	6424	4.53%	4580.2	3.31%	TGA2(bZIP)	A_NTG_S3
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1.00E-127	-294.4	0	18091	12.76%	14831.8	10.73%	LHX9(Homeobox)	A_NTG_S3
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1.00E-126	-290.8	0	9246	6.52%	7006.2	5.07%	Zic2(Zf)	A_NTG_S3
SeqBias: C/A-bias	MMMMMMMMMM	1.00E-125	-289.9	0	141708	99.96%	137787.7	99.67%	SeqBias: C	A_NTG_S3
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1.00E-125	-289.6	0	52759	37.22%	47259	34.19%	Smad3(MAD)	A_NTG_S3
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1.00E-123	-283.6	0	22998	16.22%	19350.1	14.00%	TF3A(C2H2)	A_NTG_S3
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1.00E-120	-278.2	0	88105	62.15%	81705.1	59.10%	At5g04390(C2H2)	A_NTG_S3
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1.00E-120	-278.1	0	91223	64.35%	84791.7	61.34%	STZ(C2H2)	A_NTG_S3
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1.00E-120	-277.4	0	22927	16.17%	19318.3	13.97%	BMYB(HTH)	A_NTG_S3
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1.00E-118	-273.9	0	16486	11.63%	13477.3	9.75%	MyoD(bHLH)	A_NTG_S3
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1.00E-118	-273.6	0	26468	18.67%	22600.7	16.35%	COUP-TFII(NR)	A_NTG_S3
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1.00E-118	-273.4	0	1351	0.95%	652.3	0.47%	ISRE(IRF)	A_NTG_S3
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1.00E-116	-269.4	0	7341	5.18%	5437.5	3.93%	USF1(bHLH)	A_NTG_S3
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1.00E-114	-263.3	0	6134	4.33%	4432.4	3.21%	E2FA(E2FDP)	A_NTG_S3
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1.00E-114	-262.6	0	3626	2.56%	2373	1.72%	CRE(bZIP)	A_NTG_S3
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1.00E-113	-261.8	0	31751	22.40%	27581.5	19.95%	KLF14(Zf)	A_NTG_S3
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1.00E-109	-251.3	0	542	0.38%	170.6	0.12%	Ronin(THAP)	A_NTG_S3
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1.00E-108	-249.8	0	5524	3.90%	3956.3	2.86%	ARE(NR)	A_NTG_S3
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1.00E-108	-249.3	0	13429	9.47%	10843.5	7.84%	RUNX2(Runt)	A_NTG_S3
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1.00E-106	-246.1	0	30399	21.44%	26419.1	19.11%	MYB88(MYB)	A_NTG_S3
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1.00E-105	-243.7	0	23370	16.48%	19913	14.40%	En1(Homeobox)	A_NTG_S3
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1.00E-104	-241.6	0	24435	17.24%	20907.3	15.12%	AMYB(HTH)	A_NTG_S3
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1.00E-104	-240.2	0	12802	9.03%	10322.8	7.47%	Lhx2(Homeobox)	A_NTG_S3
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1.00E-104	-239.8	0	8418	5.94%	6458.6	4.67%	CEBP(bZIP)	A_NTG_S3
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1.00E-96	-221.5	0	1201	0.85%	601.9	0.44%	Bach1(bZIP)	A_NTG_S3
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1.00E-95	-220.3	0	23847	16.82%	20492.4	14.82%	Maz(Zf)	A_NTG_S3
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1.00E-94	-218	0	1563	1.10%	861.5	0.62%	TFE3(bHLH)	A_NTG_S3
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1.00E-90	-208.1	0	10612	7.49%	8508.2	6.15%	REF6(Zf)	A_NTG_S3
"Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer"	NNNVCTGWGYAAACASN	1.00E-88	-203.8	0	14960	10.55%	12435	9.00%	"Fox:Ebox(Forkhead,bHLH)"	A_NTG_S3
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1.00E-87	-201.6	0	11740	8.28%	9543.6	6.90%	Stat3+il21(Stat)	A_NTG_S3
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1.00E-87	-200.9	0	4082	2.88%	2881	2.08%	Cbf1(bHLH)	A_NTG_S3
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1.00E-86	-200.2	0	24966	17.61%	21658.3	15.67%	GLIS3(Zf)	A_NTG_S3
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1.00E-86	-199	0	37793	26.66%	33708	24.38%	PR(NR)	A_NTG_S3
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1.00E-84	-195.5	0	14660	10.34%	12206.4	8.83%	FEA4(bZIP)	A_NTG_S3
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1.00E-84	-195.4	0	93617	66.04%	87849.5	63.55%	SUT1?	A_NTG_S3
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1.00E-84	-193.6	0	1298	0.92%	700.6	0.51%	NF-E2(bZIP)	A_NTG_S3
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1.00E-83	-191.6	0	3435	2.42%	2369.6	1.71%	Atf4(bZIP)	A_NTG_S3
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1.00E-80	-185.8	0	27026	19.06%	23677.3	17.13%	MYB(HTH)	A_NTG_S3
SeqBias: CG bias	SSSSSSSSSS	1.00E-80	-185.2	0	120995	85.35%	115432.4	83.50%	SeqBias: CG bias	A_NTG_S3
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1.00E-79	-183.4	0	63581	44.85%	58554.1	42.36%	GAGA-repeat	A_NTG_S3
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1.00E-79	-183.3	0	15323	10.81%	12874.8	9.31%	Zic(Zf)	A_NTG_S3
SeqBias: polyA-repeat	AAAAAAAAAA	1.00E-78	-181.6	0	138718	97.85%	134152.9	97.04%	SeqBias: polyA-repeat	A_NTG_S3
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1.00E-77	-177.7	0	9674	6.82%	7804.4	5.65%	CEBP:AP1(bZIP)	A_NTG_S3
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1.00E-76	-175.8	0	32610	23.00%	28995.2	20.97%	Twist2(bHLH)	A_NTG_S3
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1.00E-76	-175.3	0	6602	4.66%	5106	3.69%	IRF4(IRF)	A_NTG_S3
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1.00E-75	-174.3	0	35623	25.13%	31853.3	23.04%	ERF15(AP2EREBP)	A_NTG_S3
SeqBias: GCW-triplet	GCWGCWGCWGCW	1.00E-74	-172.4	0	141748	99.99%	138013	99.83%	SeqBias: GCW-triplet	A_NTG_S3
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1.00E-74	-172.1	0	1104	0.78%	587.4	0.42%	Nrf2(bZIP)	A_NTG_S3
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1.00E-71	-163.6	0	1800	1.27%	1118.9	0.81%	Unknown3	A_NTG_S3
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1.00E-70	-161.7	0	4330	3.05%	3194.6	2.31%	AT2G31460(REMB3)	A_NTG_S3
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1.00E-68	-157.3	0	28913	20.39%	25662.5	18.56%	NLP7(RWPRK)	A_NTG_S3
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1.00E-67	-155.1	0	14109	9.95%	11925.7	8.63%	STAT4(Stat)	A_NTG_S3
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1.00E-66	-152.9	0	3852	2.72%	2815.7	2.04%	VIP1(bZIP)	A_NTG_S3
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1.00E-65	-151.4	0	47765	33.69%	43628.7	31.56%	Trl(Zf)	A_NTG_S3
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1.00E-65	-151.1	0	1376	0.97%	814.2	0.59%	E-box(bHLH)	A_NTG_S3
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1.00E-65	-151	0	8793	6.20%	7139	5.16%	Foxo3(Forkhead)	A_NTG_S3
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1.00E-64	-148.6	0	2611	1.84%	1794.7	1.30%	Chop(bZIP)	A_NTG_S3
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1.00E-63	-147.2	0	27395	19.32%	24316.8	17.59%	AT5G23930(mTERF)	A_NTG_S3
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1.00E-63	-146.9	0	4630	3.27%	3496.7	2.53%	E-box	A_NTG_S3
GFY(?)/Promoter/Homer	ACTACAATTCCC	1.00E-63	-145.7	0	1091	0.77%	610.2	0.44%	GFY(?)	A_NTG_S3
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1.00E-61	-141.2	0	4856	3.43%	3710.7	2.68%	Zfp281(Zf)	A_NTG_S3
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1.00E-61	-141.1	0	8582	6.05%	6995.9	5.06%	HY5(bZIP)	A_NTG_S3
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1.00E-60	-139.9	0	24675	17.41%	21822.5	15.79%	ZNF416(Zf)	A_NTG_S3
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1.00E-60	-139.8	0	27253	19.22%	24244.2	17.54%	MYB101(MYB)	A_NTG_S3
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1.00E-59	-136.7	0	30073	21.21%	26928.2	19.48%	Nkx6.1(Homeobox)	A_NTG_S3
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1.00E-59	-136.7	0	59262	41.80%	54851.2	39.68%	Nanog(Homeobox)	A_NTG_S3
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1.00E-58	-133.7	0	6690	4.72%	5344.9	3.87%	Dlx3(Homeobox)	A_NTG_S3
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1.00E-57	-132.7	0	14023	9.89%	11981.8	8.67%	Myf5(bHLH)	A_NTG_S3
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1.00E-56	-129.8	0	4226	2.98%	3205.9	2.32%	SOC1(MADS)	A_NTG_S3
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1.00E-55	-127.9	0	7175	5.06%	5800.7	4.20%	Hoxa10(Homeobox)	A_NTG_S3
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1.00E-55	-127.5	0	1856	1.31%	1229.9	0.89%	BIM3(bHLH)	A_NTG_S3
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1.00E-54	-125.9	0	35457	25.01%	32130.5	23.24%	Initiator	A_NTG_S3
SeqBias: G/A bias	RRRRRRRRRR	1.00E-54	-125	0	141717	99.96%	137996.1	99.82%	SeqBias: G	A_NTG_S3
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1.00E-54	-124.4	0	8910	6.28%	7372.4	5.33%	AGL63(MADS)	A_NTG_S3
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1.00E-51	-119.6	0	9376	6.61%	7818.9	5.66%	SGR5(C2H2)	A_NTG_S3
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1.00E-51	-119.4	0	12732	8.98%	10881	7.87%	Lhx1(Homeobox)	A_NTG_S3
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1.00E-51	-119.2	0	17773	12.54%	15539.1	11.24%	DLX2(Homeobox)	A_NTG_S3
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1.00E-51	-119.2	0	14497	10.23%	12505.4	9.05%	SPCH(bHLH)	A_NTG_S3
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1.00E-51	-118	0	8331	5.88%	6883.8	4.98%	DLX5(Homeobox)	A_NTG_S3
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1.00E-51	-117.5	0	47131	33.25%	43376	31.38%	Tgif1(Homeobox)	A_NTG_S3
"Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer"	TATGCWAATBAV	1.00E-50	-115.4	0	3824	2.70%	2907.5	2.10%	"Brn1(POU,Homeobox)"	A_NTG_S3
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1.00E-50	-115.2	0	9766	6.89%	8196.9	5.93%	Foxf1(Forkhead)	A_NTG_S3
"Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer"	CCATTGTATGCAAAT	1.00E-49	-114	0	1760	1.24%	1180.4	0.85%	"Oct4:Sox17(POU,Homeobox,HMG)"	A_NTG_S3
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1.00E-49	-113.8	0	18620	13.13%	16369.9	11.84%	MYB77(MYB)	A_NTG_S3
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1.00E-48	-112.7	0	23931	16.88%	21352.7	15.45%	MYB73(MYB)	A_NTG_S3
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1.00E-48	-111.5	0	4153	2.93%	3205.7	2.32%	Pbx3(Homeobox)	A_NTG_S3
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1.00E-47	-110.1	0	7903	5.57%	6538.3	4.73%	FOXK2(Forkhead)	A_NTG_S3
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1.00E-47	-109.9	0	2669	1.88%	1940.4	1.40%	bZIP69(bZIP)	A_NTG_S3
"Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer"	WATGCAAATGAG	1.00E-47	-109.8	0	5107	3.60%	4046	2.93%	"Oct6(POU,Homeobox)"	A_NTG_S3
Tal1	CATCTG	1.00E-47	-109.3	0	23431	16.53%	20912.1	15.13%	Tal1	A_NTG_S3
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1.00E-47	-109.2	0	18050	12.73%	15874.5	11.48%	MYB81(MYB)	A_NTG_S3
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1.00E-45	-105.1	0	11246	7.93%	9608.2	6.95%	LBD23(LOBAS2)	A_NTG_S3
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1.00E-45	-104.7	0	10007	7.06%	8477	6.13%	Foxa2(Forkhead)	A_NTG_S3
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1.00E-45	-104.1	0	7766	5.48%	6446.4	4.66%	Klf9(Zf)	A_NTG_S3
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1.00E-44	-103.4	0	12243	8.64%	10535.6	7.62%	FOXK1(Forkhead)	A_NTG_S3
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1.00E-44	-101.8	0	6485	4.57%	5306.6	3.84%	THRa(NR)	A_NTG_S3
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1.00E-43	-101.3	0	15690	11.07%	13739.3	9.94%	MafA(bZIP)	A_NTG_S3
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1.00E-42	-98.89	0	1080	0.76%	671.9	0.49%	NFE2L2(bZIP)	A_NTG_S3
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1.00E-42	-98.75	0	8057	5.68%	6738.5	4.87%	CLOCK(bHLH)	A_NTG_S3
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1.00E-42	-98.63	0	19470	13.73%	17288.8	12.51%	Lhx3(Homeobox)	A_NTG_S3
"GFY-Staf(?,Zf)/Promoter/Homer"	RACTACAATTCCCAGAAKGC	1.00E-42	-98.45	0	909	0.64%	541.2	0.39%	"GFY-Staf(?,Zf)"	A_NTG_S3
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1.00E-42	-98.22	0	22936	16.18%	20547.2	14.86%	JGL(C2H2)	A_NTG_S3
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1.00E-42	-96.95	0	3912	2.76%	3049.5	2.21%	Pknox1(Homeobox)	A_NTG_S3
"Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer"	GATTTGCATA	1.00E-42	-96.9	0	3530	2.49%	2717.7	1.97%	"Oct11(POU,Homeobox)"	A_NTG_S3
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1.00E-41	-95.82	0	5378	3.79%	4346.9	3.14%	WUS1(Homeobox)	A_NTG_S3
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1.00E-41	-95.43	0	24717	17.43%	22253.6	16.10%	Isl1(Homeobox)	A_NTG_S3
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1.00E-41	-95.41	0	8022	5.66%	6725.2	4.86%	Stat3(Stat)	A_NTG_S3
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1.00E-41	-95.22	0	16677	11.76%	14706.8	10.64%	RUNX1(Runt)	A_NTG_S3
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1.00E-41	-94.7	0	90562	63.88%	85913.6	62.15%	bZIP18(bZIP)	A_NTG_S3
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1.00E-41	-94.44	0	9116	6.43%	7726.6	5.59%	FoxL2(Forkhead)	A_NTG_S3
"ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer"	AGGAARCAGCTG	1.00E-40	-92.46	0	1804	1.27%	1266	0.92%	"ETS:E-box(ETS,bHLH)"	A_NTG_S3
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1.00E-39	-91.33	0	3402	2.40%	2626.6	1.90%	bHLH74(bHLH)	A_NTG_S3
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1.00E-39	-90.34	0	19427	13.70%	17321.1	12.53%	At1g75490(AP2EREBP)	A_NTG_S3
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1.00E-37	-87.46	0	1498	1.06%	1026.1	0.74%	AGL15(MADS)	A_NTG_S3
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1.00E-37	-85.9	0	3150	2.22%	2427.6	1.76%	Unknown1(NR	A_NTG_S3
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1.00E-37	-85.33	0	4593	3.24%	3697	2.67%	DREB19(AP2EREBP)	A_NTG_S3
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1.00E-37	-85.26	0	10857	7.66%	9383.2	6.79%	AtHB32(ZFHD)	A_NTG_S3
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1.00E-35	-81.8	0	10225	7.21%	8825.1	6.38%	WT1(Zf)	A_NTG_S3
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1.00E-34	-79.73	0	17137	12.09%	15270.7	11.05%	EBF1(EBF)	A_NTG_S3
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1.00E-34	-79.48	0	6019	4.25%	5001.7	3.62%	E2F4(E2F)	A_NTG_S3
"OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer"	ATGAATWATTCATGA	1.00E-34	-79.14	0	244	0.17%	96.4	0.07%	"OCT:OCT(POU,Homeobox,IR1)"	A_NTG_S3
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1.00E-34	-78.75	0	35722	25.20%	32902.4	23.80%	Nkx3.1(Homeobox)	A_NTG_S3
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1.00E-34	-78.74	0	5281	3.73%	4341.2	3.14%	FOXP1(Forkhead)	A_NTG_S3
"OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer"	ATGAATATTCATGAG	1.00E-33	-77.83	0	165	0.12%	52.6	0.04%	"OCT:OCT(POU,Homeobox)"	A_NTG_S3
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1.00E-33	-77.45	0	15715	11.09%	13959	10.10%	PIF5ox(bHLH)	A_NTG_S3
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1.00E-33	-77.45	0	1496	1.06%	1048.7	0.76%	BIM1(bHLH)	A_NTG_S3
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1.00E-33	-77.4	0	65715	46.35%	61858.7	44.75%	AR-halfsite(NR)	A_NTG_S3
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1.00E-33	-76.18	0	22343	15.76%	20206.6	14.62%	KLF5(Zf)	A_NTG_S3
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1.00E-33	-76.14	0	7928	5.59%	6755.5	4.89%	Hand2(bHLH)	A_NTG_S3
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1.00E-32	-74.43	0	20997	14.81%	18953.4	13.71%	MyoG(bHLH)	A_NTG_S3
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1.00E-32	-74.29	0	14961	10.55%	13282.3	9.61%	ZNF467(Zf)	A_NTG_S3
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1.00E-31	-73.39	0	7026	4.96%	5949.4	4.30%	STAT6(Stat)	A_NTG_S3
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1.00E-31	-72.79	0	28767	20.29%	26339.3	19.05%	Smad4(MAD)	A_NTG_S3
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1.00E-31	-72.19	0	9021	6.36%	7784.9	5.63%	Gfi1b(Zf)	A_NTG_S3
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1.00E-31	-71.89	0	1658	1.17%	1197.8	0.87%	IRF:BATF(IRF:bZIP)	A_NTG_S3
"Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer"	AGGTGHCAGACA	1.00E-30	-70.8	0	3226	2.28%	2551.3	1.85%	"Tbox:Smad(T-box,MAD)"	A_NTG_S3
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1.00E-30	-70.57	0	14152	9.98%	12559.3	9.08%	AT1G69570(C2C2dof)	A_NTG_S3
"OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer"	ATTTGCATAACAATG	1.00E-29	-68.6	0	1878	1.32%	1392.4	1.01%	"OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)"	A_NTG_S3
"Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer"	ATTTGCATAW	1.00E-29	-68.46	0	4956	3.50%	4102.2	2.97%	"Oct4(POU,Homeobox)"	A_NTG_S3
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1.00E-29	-67.76	0	14048	9.91%	12487.1	9.03%	FOXA1(Forkhead)	A_NTG_S3
SeqBias: A/T bias	WWWWWWWWWW	1.00E-29	-67.54	0	111003	78.30%	106505.6	77.04%	SeqBias: A	A_NTG_S3
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1.00E-29	-67.5	0	824	0.58%	527.9	0.38%	NFkB-p65-Rel(RHD)	A_NTG_S3
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1.00E-29	-67.24	0	3576	2.52%	2875.9	2.08%	M1BP(Zf)	A_NTG_S3
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1.00E-29	-66.9	0	19274	13.60%	17406.8	12.59%	At5g18450(AP2EREBP)	A_NTG_S3
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1.00E-28	-66.53	0	43902	30.97%	40918.9	29.60%	PHA-4(Forkhead)	A_NTG_S3
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1.00E-28	-66.33	0	2764	1.95%	2164.7	1.57%	PIF7(bHLH)	A_NTG_S3
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1.00E-28	-66.2	0	8524	6.01%	7369.8	5.33%	ZBTB18(Zf)	A_NTG_S3
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1.00E-28	-66.09	0	13118	9.25%	11633.5	8.42%	TAGL1(MADS)	A_NTG_S3
"NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer"	WNTGTTTRYTTTGGCA	1.00E-28	-65.72	0	802	0.57%	513.9	0.37%	"NF1:FOXA1(CTF,Forkhead)"	A_NTG_S3
"OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer"	ATGCATWATGCATRW	1.00E-28	-64.79	0	6418	4.53%	5448.2	3.94%	"OCT:OCT-short(POU,Homeobox)"	A_NTG_S3
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1.00E-28	-64.65	0	13964	9.85%	12437.6	9.00%	EBF2(EBF)	A_NTG_S3
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1.00E-27	-63.26	0	13541	9.55%	12054.1	8.72%	RIN(MADS)	A_NTG_S3
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1.00E-26	-62	0	2139	1.51%	1637.8	1.18%	O2(bZIP)	A_NTG_S3
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1.00E-26	-61.98	0	11382	8.03%	10050.2	7.27%	LIN-39(Homeobox)	A_NTG_S3
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1.00E-26	-61.59	0	13425	9.47%	11961.2	8.65%	ATHB33(ZFHD)	A_NTG_S3
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1.00E-26	-60.95	0	10402	7.34%	9147.9	6.62%	Pdx1(Homeobox)	A_NTG_S3
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1.00E-26	-60	0	21071	14.86%	19182.1	13.88%	MYB33(MYB)	A_NTG_S3
"Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer"	ATGAATATTC	1.00E-25	-58.95	0	907	0.64%	610	0.44%	"Brn2(POU,Homeobox)"	A_NTG_S3
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1.00E-25	-58.49	0	14365	10.13%	12872.1	9.31%	MYB65(MYB)	A_NTG_S3
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1.00E-25	-57.7	0	18440	13.01%	16719.4	12.09%	KLF6(Zf)	A_NTG_S3
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1.00E-24	-56.83	0	11118	7.84%	9849.2	7.12%	FOXA1(Forkhead)	A_NTG_S3
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1.00E-24	-55.85	0	911	0.64%	620.5	0.45%	AGL16(MADS)	A_NTG_S3
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1.00E-24	-55.72	0	2844	2.01%	2278.1	1.65%	bZIP28(bZIP)	A_NTG_S3
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1.00E-23	-55.05	0	2280	1.61%	1785.5	1.29%	GBF6(bZIP)	A_NTG_S3
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1.00E-23	-54.26	0	3618	2.55%	2974.6	2.15%	Foxa3(Forkhead)	A_NTG_S3
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1.00E-23	-53.57	0	4305	3.04%	3596.5	2.60%	bHLHE40(bHLH)	A_NTG_S3
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1.00E-23	-52.98	0	3365	2.37%	2754.7	1.99%	Zfp809(Zf)	A_NTG_S3
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1.00E-22	-52.31	0	6862	4.84%	5939.7	4.30%	NFkB-p65(RHD)	A_NTG_S3
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1.00E-22	-51.99	0	9489	6.69%	8374.8	6.06%	Npas4(bHLH)	A_NTG_S3
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1.00E-22	-51.42	0	14208	10.02%	12797	9.26%	ZNF189(Zf)	A_NTG_S3
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1.00E-22	-51	0	1784	1.26%	1370	0.99%	Unknown3	A_NTG_S3
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1.00E-22	-50.79	0	3727	2.63%	3090.6	2.24%	bZIP48(bZIP)	A_NTG_S3
"NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer"	SARTGGAAAAWRTGAGTCAB	1.00E-22	-50.71	0	2129	1.50%	1670.7	1.21%	"NFAT:AP1(RHD,bZIP)"	A_NTG_S3
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1.00E-21	-50.3	0	1113	0.79%	801	0.58%	AGL6(MADS)	A_NTG_S3
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1.00E-21	-49.86	0	46884	33.07%	44060.7	31.87%	HuR(?)	A_NTG_S3
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1.00E-20	-46.44	0	8544	6.03%	7543.2	5.46%	ATHB23(ZFHD)	A_NTG_S3
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1.00E-20	-46.24	0	8157	5.75%	7185.3	5.20%	PRDM1(Zf)	A_NTG_S3
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1.00E-20	-46.22	0	3244	2.29%	2680.6	1.94%	At5g66730(C2H2)	A_NTG_S3
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1.00E-19	-45.93	0	3239	2.28%	2677.8	1.94%	MafF(bZIP)	A_NTG_S3
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1.00E-19	-45.9	0	3400	2.40%	2822.9	2.04%	GBF5(bZIP)	A_NTG_S3
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1.00E-19	-45.52	0	6359	4.49%	5526.1	4.00%	Klf4(Zf)	A_NTG_S3
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1.00E-19	-45.4	0	17104	12.06%	15600.4	11.28%	MYB70(MYB)	A_NTG_S3
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1.00E-19	-45.2	0	3159	2.23%	2609.3	1.89%	AREB3(bZIP)	A_NTG_S3
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1.00E-19	-45.18	0	14998	10.58%	13611.5	9.85%	DLX1(Homeobox)	A_NTG_S3
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1.00E-19	-44.72	0	3115	2.20%	2572.9	1.86%	EBF(EBF)	A_NTG_S3
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1.00E-19	-44.04	0	2955	2.08%	2432.7	1.76%	MYB98(MYB)	A_NTG_S3
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1.00E-18	-43.4	0	14314	10.10%	12986.2	9.39%	KAN2(G2like)	A_NTG_S3
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1.00E-18	-42.67	0	1515	1.07%	1166.4	0.84%	PBX1(Homeobox)	A_NTG_S3
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1.00E-18	-42.02	0	3798	2.68%	3204.3	2.32%	Tbx20(T-box)	A_NTG_S3
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1.00E-17	-41.15	0	6426	4.53%	5622.8	4.07%	CHR(?)	A_NTG_S3
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1.00E-17	-41.02	0	6454	4.55%	5649.2	4.09%	c-Myc(bHLH)	A_NTG_S3
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1.00E-17	-40.97	0	2285	1.61%	1849.5	1.34%	Dorsal(RHD)	A_NTG_S3
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1.00E-17	-40.82	0	10668	7.53%	9582.2	6.93%	TBP3(MYBrelated)	A_NTG_S3
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1.00E-17	-40.52	0	3647	2.57%	3076.5	2.23%	bHLH34(bHLH)	A_NTG_S3
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1.00E-17	-39.63	0	2315	1.63%	1882.3	1.36%	ABF2(bZIP)	A_NTG_S3
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1.00E-17	-39.6	0	19117	13.48%	17587.6	12.72%	ERF105(AP2EREBP)	A_NTG_S3
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1.00E-16	-38.6	0	28179	19.88%	26257.9	18.99%	Smad2(MAD)	A_NTG_S3
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1.00E-16	-38.21	0	21977	15.50%	20332.9	14.71%	Rbpj1(?)	A_NTG_S3
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1.00E-16	-38.02	0	4557	3.21%	3923.3	2.84%	At5g08750(C3H)	A_NTG_S3
"LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer"	RGGTTACTANAGGTCA	1.00E-16	-37.72	0	710	0.50%	498.5	0.36%	"LXRE(NR),DR4"	A_NTG_S3
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1.00E-16	-37.48	0	2356	1.66%	1929.7	1.40%	Hoxb4(Homeobox)	A_NTG_S3
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1.00E-16	-37.31	0	3240	2.29%	2727	1.97%	bZIP53(bZIP)	A_NTG_S3
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1.00E-15	-36.67	0	1237	0.87%	947.7	0.69%	ZSCAN22(Zf)	A_NTG_S3
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1.00E-15	-36.67	0	4800	3.39%	4156	3.01%	STAT5(Stat)	A_NTG_S3
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1.00E-15	-36.28	0	7594	5.36%	6750.1	4.88%	ATHB34(ZFHD)	A_NTG_S3
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1.00E-15	-36.2	0	10650	7.51%	9615	6.96%	n-Myc(bHLH)	A_NTG_S3
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1.00E-15	-35.95	0	7314	5.16%	6493	4.70%	STAT6(Stat)	A_NTG_S3
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1.00E-15	-35.85	0	4526	3.19%	3910.2	2.83%	AtIDD11(C2H2)	A_NTG_S3
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1.00E-15	-35.7	0	13612	9.60%	12416.6	8.98%	bHLH80(bHLH)	A_NTG_S3
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1.00E-15	-35.61	0	255	0.18%	143.5	0.10%	T1ISRE(IRF)	A_NTG_S3
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1.00E-15	-34.99	0	1767	1.25%	1417.4	1.03%	ZNF675(Zf)	A_NTG_S3
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1.00E-15	-34.83	0	5225	3.69%	4562.1	3.30%	At1g36060(AP2EREBP)	A_NTG_S3
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1.00E-14	-34.29	0	5756	4.06%	5059	3.66%	ZNF143|STAF(Zf)	A_NTG_S3
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1.00E-14	-34.17	0	10070	7.10%	9093	6.58%	VND2(NAC)	A_NTG_S3
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1.00E-14	-33.9	0	12137	8.56%	11045	7.99%	VND6(NAC)	A_NTG_S3
"Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer"	ATATGCAAAT	1.00E-14	-33.72	0	2859	2.02%	2403	1.74%	"Oct2(POU,Homeobox)"	A_NTG_S3
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1.00E-14	-33.45	0	22860	16.13%	21251.7	15.37%	At2g33710(AP2EREBP)	A_NTG_S3
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1.00E-14	-33.36	0	3654	2.58%	3128.5	2.26%	DREB2(AP2EREBP)	A_NTG_S3
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1.00E-14	-33.24	0	12213	8.61%	11124	8.05%	FOXM1(Forkhead)	A_NTG_S3
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1.00E-14	-33.24	0	15590	11.00%	14324.2	10.36%	AT1G71450(AP2EREBP)	A_NTG_S3
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1.00E-14	-33	0	2777	1.96%	2332.4	1.69%	Pit1+1bp(Homeobox)	A_NTG_S3
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1.00E-14	-32.42	0	8231	5.81%	7384.9	5.34%	NAP(NAC)	A_NTG_S3
"Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer"	GTRGGTCASTGGGTCA	1.00E-14	-32.39	0	2125	1.50%	1748.7	1.26%	"Reverb(NR),DR2"	A_NTG_S3
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1.00E-13	-32.12	0	21476	15.15%	19950.4	14.43%	AT1G28160(AP2EREBP)	A_NTG_S3
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1.00E-13	-31.95	0	13823	9.75%	12665.6	9.16%	Hoxd10(Homeobox)	A_NTG_S3
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1.00E-13	-31.72	0	1308	0.92%	1027.1	0.74%	ZNF317(Zf)	A_NTG_S3
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1.00E-13	-31.32	0	8016	5.65%	7194.5	5.20%	CEJ1(AP2EREBP)	A_NTG_S3
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1.00E-13	-30.22	0	8270	5.83%	7444.2	5.38%	ATHB13(Homeobox)	A_NTG_S3
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1.00E-13	-30.19	0	1814	1.28%	1481.7	1.07%	Srebp2(bHLH)	A_NTG_S3
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1.00E-13	-30.1	0	10076	7.11%	9145	6.62%	SMB(NAC)	A_NTG_S3
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1.00E-13	-30.08	0	14431	10.18%	13268.6	9.60%	SOL1(CPP)	A_NTG_S3
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1.00E-12	-29.46	0	4250	3.00%	3704.2	2.68%	DEL2(E2FDP)	A_NTG_S3
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1.00E-12	-29.36	0	14982	10.57%	13802.2	9.98%	TCX2(CPP)	A_NTG_S3
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1.00E-12	-28.97	0	8634	6.09%	7800.5	5.64%	GATA4(C2C2gata)	A_NTG_S3
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1.00E-12	-28.8	0	2772	1.96%	2353.3	1.70%	MYB119(MYB)	A_NTG_S3
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1.00E-12	-28.75	0	517	0.36%	361.8	0.26%	AGL25(MADS)	A_NTG_S3
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1.00E-12	-28.75	0	2665	1.88%	2256.3	1.63%	Tcfcp2l1(CP2)	A_NTG_S3
"ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer"	VAGGTCACNSTGACC	1.00E-12	-28.67	0	4123	2.91%	3593	2.60%	"ERE(NR),IR3"	A_NTG_S3
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1.00E-12	-28.34	0	350	0.25%	227.9	0.16%	AGL13(MADS)	A_NTG_S3
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1.00E-12	-28.13	0	6262	4.42%	5585.1	4.04%	NTM1(NAC)	A_NTG_S3
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1.00E-12	-28.03	0	5547	3.91%	4919.5	3.56%	bZIP3(bZIP)	A_NTG_S3
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1.00E-12	-27.98	0	34128	24.07%	32176.8	23.28%	Hoxa9(Homeobox)	A_NTG_S3
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1.00E-11	-27.61	0	26212	18.49%	24568.3	17.77%	ANAC038(NAC)	A_NTG_S3
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1.00E-11	-27.6	0	3529	2.49%	3054.4	2.21%	bZIP68(bZIP)	A_NTG_S3
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1.00E-11	-27.48	0	4302	3.03%	3768.2	2.73%	CAMTA1(CAMTA)	A_NTG_S3
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1.00E-11	-27.42	0	18416	12.99%	17105.8	12.37%	PIF4(bHLH)	A_NTG_S3
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1.00E-11	-27.02	0	6124	4.32%	5467.2	3.95%	AT3G10030(Trihelix)	A_NTG_S3
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1.00E-11	-26.79	0	3900	2.75%	3402.5	2.46%	AT1G12630(AP2EREBP)	A_NTG_S3
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1.00E-11	-26.7	0	27149	19.15%	25486.8	18.44%	ATAF1(NAC)	A_NTG_S3
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1.00E-11	-26.64	0	2220	1.57%	1865.8	1.35%	Twist(bHLH)	A_NTG_S3
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1.00E-11	-26.58	0	6963	4.91%	6258	4.53%	ATHB24(ZFHD)	A_NTG_S3
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1.00E-11	-26.32	0	8842	6.24%	8027.6	5.81%	MYB56(MYB)	A_NTG_S3
"bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer"	NAGTTTCABTHTGACTNW	1.00E-11	-26.14	0	5862	4.13%	5231.1	3.78%	"bZIP:IRF(bZIP,IRF)"	A_NTG_S3
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1.00E-11	-25.81	0	176	0.12%	98.3	0.07%	GFX(?)	A_NTG_S3
"RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer"	GGGRAARRGRMCAGMTG	1.00E-11	-25.7	0	5459	3.85%	4859.1	3.51%	"RBPJ:Ebox(?,bHLH)"	A_NTG_S3
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1.00E-11	-25.56	0	17896	12.62%	16640.5	12.04%	AtGRF6(GRF)	A_NTG_S3
"GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer"	NNNNNBAGATAWYATCTVHN	1.00E-11	-25.55	0	1387	0.98%	1123.2	0.81%	"GATA(Zf),IR3"	A_NTG_S3
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1.00E-11	-25.34	0	7267	5.13%	6556.3	4.74%	ATHB5(HB)	A_NTG_S3
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1.00E-10	-25.02	0	13436	9.48%	12397.9	8.97%	ZNF341(Zf)	A_NTG_S3
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1.00E-10	-24.71	0	7420	5.23%	6707.1	4.85%	E2F6(E2F)	A_NTG_S3
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1.00E-10	-24.6	0	22641	15.97%	21200.4	15.34%	ANAC046(NAC)	A_NTG_S3
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1.00E-10	-24.39	0	10980	7.75%	10074.8	7.29%	Egr1(Zf)	A_NTG_S3
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1.00E-10	-24.24	0	287	0.20%	185.4	0.13%	EBNA1(EBV-virus)	A_NTG_S3
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1.00E-10	-24.06	0	4502	3.18%	3983.9	2.88%	IDD7(C2H2)	A_NTG_S3
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1.00E-10	-24	0	5153	3.63%	4590.4	3.32%	LMI1(HB)	A_NTG_S3
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1.00E-10	-23.57	0	9106	6.42%	8311.6	6.01%	DEAR2(AP2EREBP)	A_NTG_S3
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1.00E-10	-23.24	0	13098	9.24%	12103.4	8.76%	Replumless(BLH)	A_NTG_S3
"Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer"	GTCATGCHTGRCTGS	1.00E-09	-22.81	0	5850	4.13%	5254.4	3.80%	"Pax8(Paired,Homeobox)"	A_NTG_S3
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1.00E-09	-22.44	0	2725	1.92%	2353.5	1.70%	HOXA1(Homeobox)	A_NTG_S3
"PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer"	GTCACGCTCSCTGM	1.00E-09	-22.42	0	1552	1.09%	1286.7	0.93%	"PAX5(Paired,Homeobox),condensed"	A_NTG_S3
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1.00E-09	-22.22	0	21054	14.85%	19725.2	14.27%	Unknown2	A_NTG_S3
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1.00E-09	-22.17	0	1006	0.71%	801.5	0.58%	AARE(HLH)	A_NTG_S3
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1.00E-09	-21.89	0	9776	6.90%	8968.9	6.49%	bHLH130(bHLH)	A_NTG_S3
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1.00E-09	-21.83	0	1962	1.38%	1660.3	1.20%	bHLH157(bHLH)	A_NTG_S3
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1.00E-09	-21.71	0	4635	3.27%	4130	2.99%	Hoxc9(Homeobox)	A_NTG_S3
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1.00E-09	-21.67	0	2659	1.88%	2298.4	1.66%	DMRT1(DM)	A_NTG_S3
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1.00E-09	-21.66	0	11863	8.37%	10953.9	7.92%	BIM2(bHLH)	A_NTG_S3
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1.00E-09	-21.61	0	10202	7.20%	9376.6	6.78%	DPL-1(E2F)	A_NTG_S3
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1.00E-09	-21.54	0	7122	5.02%	6464.6	4.68%	ZNF7(Zf)	A_NTG_S3
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1.00E-09	-21.5	0	5985	4.22%	5395.2	3.90%	ATHB6(Homeobox)	A_NTG_S3
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1.00E-09	-21.08	0	4790	3.38%	4280.6	3.10%	SVP(MADS)	A_NTG_S3
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1.00E-08	-20.63	0	2781	1.96%	2418.7	1.75%	bZIP16(bZIP)	A_NTG_S3
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1.00E-08	-20.59	0	5564	3.92%	5010.6	3.62%	At4g16750(AP2EREBP)	A_NTG_S3
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1.00E-08	-20.39	0	2346	1.65%	2020.3	1.46%	MYB3R1(MYB)	A_NTG_S3
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1.00E-08	-20.01	0	3588	2.53%	3170.1	2.29%	Brachyury(T-box)	A_NTG_S3
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1.00E-08	-19.92	0	46579	32.86%	44413.8	32.13%	ARF2(ARF)	A_NTG_S3
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1.00E-08	-19.67	0	5783	4.08%	5226.8	3.78%	E-box	A_NTG_S3
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1.00E-08	-19.65	0	8893	6.27%	8163.2	5.90%	ANAC071(NAC)	A_NTG_S3
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1.00E-08	-19.48	0	5972	4.21%	5407	3.91%	AT2G15740(C2H2)	A_NTG_S3
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1.00E-08	-18.94	0	27469	19.38%	25965.8	18.78%	AT5G02460(C2C2dof)	A_NTG_S3
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1.00E-08	-18.79	0	6974	4.92%	6359.5	4.60%	Foxh1(Forkhead)	A_NTG_S3
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1.00E-08	-18.74	0	4280	3.02%	3827.4	2.77%	AT1G76870(Trihelix)	A_NTG_S3
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1.00E-08	-18.72	0	21186	14.94%	19925.5	14.41%	ZFX(Zf)	A_NTG_S3
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1.00E-08	-18.67	0	707	0.50%	553.3	0.40%	CDM1(C3H)	A_NTG_S3
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1.00E-07	-17.98	0	2797	1.97%	2454.2	1.78%	MYB118(MYB)	A_NTG_S3
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1.00E-07	-17.93	0	7780	5.49%	7133.8	5.16%	ANAC028(NAC)	A_NTG_S3
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1.00E-07	-17.77	0	5402	3.81%	4890	3.54%	ZNF322(Zf)	A_NTG_S3
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1.00E-07	-17.53	0	2607	1.84%	2282.1	1.65%	Srebp1a(bHLH)	A_NTG_S3
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1.00E-07	-17.41	0	1880	1.33%	1614.8	1.17%	bHLH10(bHLH)	A_NTG_S3
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1.00E-07	-17.32	0	20477	14.44%	19275.1	13.94%	SPL1(SBP)	A_NTG_S3
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1.00E-07	-17.26	0	9121	6.43%	8415.3	6.09%	ANAC016(NAC)	A_NTG_S3
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1.00E-07	-16.94	0	2822	1.99%	2486.3	1.80%	ATHB20(Homeobox)	A_NTG_S3
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1.00E-07	-16.66	0	1372	0.97%	1156.8	0.84%	MYB3R4(MYB)	A_NTG_S3
"FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer"	AGGTCANTGACCTB	1.00E-07	-16.57	0	5460	3.85%	4959.2	3.59%	"FXR(NR),IR1"	A_NTG_S3
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1.00E-07	-16.48	0	7954	5.61%	7319.5	5.29%	ANAC057(NAC)	A_NTG_S3
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1.00E-07	-16.46	0	11735	8.28%	10918.7	7.90%	ANAC070(NAC)	A_NTG_S3
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1.00E-07	-16.39	0	21505	15.17%	20285.2	14.67%	CDF3(C2C2dof)	A_NTG_S3
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1.00E-06	-16.12	0	20189	14.24%	19026.2	13.76%	AT5G25475(ABI3VP1)	A_NTG_S3
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1.00E-06	-16.05	0	2213	1.56%	1931	1.40%	At5g65130(AP2EREBP)	A_NTG_S3
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1.00E-06	-15.97	0	3796	2.68%	3403.6	2.46%	ZNF519(Zf)	A_NTG_S3
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1.00E-06	-15.64	0	1705	1.20%	1466.8	1.06%	AT3G58630(Trihelix)	A_NTG_S3
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1.00E-06	-15.48	0	28177	19.88%	26737.7	19.34%	Hoxa13(Homeobox)	A_NTG_S3
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1.00E-06	-15.42	0	1652	1.17%	1419.1	1.03%	GT3a(Trihelix)	A_NTG_S3
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1.00E-06	-15.41	0	8808	6.21%	8147.8	5.89%	RKD2(RWPRK)	A_NTG_S3
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1.00E-06	-15.4	0	1537	1.08%	1314.6	0.95%	At1g77640(AP2EREBP)	A_NTG_S3
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1.00E-06	-15.33	0	2223	1.57%	1945.1	1.41%	RRTF1(AP2EREBP)	A_NTG_S3
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1.00E-06	-15	0	13948	9.84%	13062.1	9.45%	AT2G20110(CPP)	A_NTG_S3
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1.00E-06	-14.59	0	27996	19.75%	26587.5	19.23%	Meis1(Homeobox)	A_NTG_S3
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1.00E-06	-14.57	0	572	0.40%	451.6	0.33%	MYB3R5(MYB)	A_NTG_S3
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1.00E-06	-14.53	0	1385	0.98%	1181.1	0.85%	E2F7(E2F)	A_NTG_S3
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1.00E-06	-14.18	0	5313	3.75%	4851.5	3.51%	GATA11(C2C2gata)	A_NTG_S3
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1.00E-06	-14.15	0	2757	1.94%	2452	1.77%	At4g31060(AP2EREBP)	A_NTG_S3
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1.00E-06	-14.09	0	1909	1.35%	1665.6	1.20%	REB1	A_NTG_S3
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1.00E-06	-14.02	0	10902	7.69%	10168.3	7.36%	TEAD4(TEA)	A_NTG_S3
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1.00E-06	-14.01	0	11492	8.11%	10733	7.76%	bHLH122(bHLH)	A_NTG_S3
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1.00E-06	-13.96	0	8211	5.79%	7604	5.50%	MYB116(MYB)	A_NTG_S3
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1.00E-05	-13.24	0	28893	20.38%	27493.3	19.89%	Ascl1(bHLH)	A_NTG_S3
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1.00E-05	-13.24	0	2150	1.52%	1895.5	1.37%	DREB26(AP2EREBP)	A_NTG_S3
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1.00E-05	-13.21	0	8753	6.17%	8132.4	5.88%	NST1(NAC)	A_NTG_S3
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1.00E-05	-13.13	0	4435	3.13%	4036	2.92%	ABI5(bZIP)	A_NTG_S3
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1.00E-05	-13.07	0	849	0.60%	704.1	0.51%	Unknown1	A_NTG_S3
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1.00E-05	-12.69	0	2701	1.91%	2413.4	1.75%	DDF1(AP2EREBP)	A_NTG_S3
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1.00E-05	-12.53	0	2589	1.83%	2310.9	1.67%	MGP(C2H2)	A_NTG_S3
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1.00E-05	-12.48	0	13594	9.59%	12777.3	9.24%	RAP26(AP2EREBP)	A_NTG_S3
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1.00E-05	-12.46	0	1019	0.72%	862	0.62%	TSO1(CPP)	A_NTG_S3
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1.00E-05	-12.39	0	4770	3.36%	4362.3	3.16%	ANAC013(NAC)	A_NTG_S3
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1.00E-05	-12.31	0	20754	14.64%	19666.2	14.23%	Hoxd12(Homeobox)	A_NTG_S3
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1.00E-05	-12.26	0	15474	10.92%	14587.1	10.55%	ERF13(AP2EREBP)	A_NTG_S3
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1.00E-05	-11.98	0	1429	1.01%	1239.4	0.90%	CEBP:CEBP(bZIP)	A_NTG_S3
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1.00E-05	-11.9	0	1694	1.19%	1484.1	1.07%	TINY(AP2EREBP)	A_NTG_S3
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1.00E-05	-11.87	0	8307	5.86%	7731	5.59%	PBX2(Homeobox)	A_NTG_S3
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1.00E-05	-11.86	0	4962	3.50%	4551.4	3.29%	AIL7(AP2EREBP)	A_NTG_S3
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1.00E-05	-11.83	0	4237	2.99%	3866	2.80%	GATA1(C2C2gata)	A_NTG_S3
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1.00E-05	-11.56	0	8236	5.81%	7669.9	5.55%	VND1(NAC)	A_NTG_S3
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1.00E-04	-11.33	0	7188	5.07%	6674.5	4.83%	VND3(NAC)	A_NTG_S3
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1.00E-04	-11.19	0	26897	18.97%	25628.7	18.54%	SPL9(SBP)	A_NTG_S3
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1.00E-04	-11.12	0	10168	7.17%	9524.4	6.89%	Max(bHLH)	A_NTG_S3
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1.00E-04	-11.02	0	1195	0.84%	1031.7	0.75%	SPL14(SBP)	A_NTG_S3
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1.00E-04	-11	0	30063	21.21%	28696.7	20.76%	Nkx2.2(Homeobox)	A_NTG_S3
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1.00E-04	-10.96	0	10602	7.48%	9943.7	7.19%	ATHB25(ZFHD)	A_NTG_S3
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1.00E-04	-10.84	0	7614	5.37%	7089.6	5.13%	SPL11(SBP)	A_NTG_S3
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1.00E-04	-10.79	0	11360	8.01%	10673.3	7.72%	NAM(NAC)	A_NTG_S3
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1.00E-04	-10.79	0	1353	0.95%	1178.9	0.85%	At2g44940(AP2EREBP)	A_NTG_S3
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1.00E-04	-10.52	1.00E-04	7416	5.23%	6906.5	5.00%	MafB(bZIP)	A_NTG_S3
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1.00E-04	-10.43	1.00E-04	1174	0.83%	1016.6	0.74%	HAT1(Homeobox)	A_NTG_S3
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1.00E-04	-10.36	1.00E-04	10319	7.28%	9685.1	7.01%	ERF11(AP2EREBP)	A_NTG_S3
"GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer"	CRGCTGBNGNSNNSAGATAA	1.00E-04	-10.26	1.00E-04	1473	1.04%	1293.8	0.94%	"GATA:SCL(Zf,bHLH)"	A_NTG_S3
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1.00E-04	-10.2	1.00E-04	207	0.15%	152	0.11%	bZIP44(bZIP)	A_NTG_S3
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1.00E-04	-10.19	1.00E-04	8724	6.15%	8162.4	5.90%	Arnt:Ahr(bHLH)	A_NTG_S3
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1.00E-04	-10.07	1.00E-04	7010	4.94%	6527	4.72%	GATA12(C2C2gata)	A_NTG_S3
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1.00E-04	-9.885	1.00E-04	2804	1.98%	2540.7	1.84%	AT1G44830(AP2EREBP)	A_NTG_S3
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1.00E-04	-9.694	1.00E-04	889	0.63%	760.6	0.55%	ZNF669(Zf)	A_NTG_S3
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1.00E-04	-9.561	1.00E-04	1815	1.28%	1617.5	1.17%	AT3G60490(AP2EREBP)	A_NTG_S3
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1.00E-04	-9.52	2.00E-04	3828	2.70%	3511.9	2.54%	STAT1(Stat)	A_NTG_S3
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1.00E-04	-9.442	2.00E-04	1847	1.30%	1648.7	1.19%	bHLH28(bHLH)	A_NTG_S3
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1.00E-04	-9.38	2.00E-04	518	0.37%	426.1	0.31%	ZNF768(Zf)	A_NTG_S3
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1.00E-04	-9.369	2.00E-04	16813	11.86%	15952.1	11.54%	AP-2gamma(AP2)	A_NTG_S3
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1.00E-04	-9.271	2.00E-04	2624	1.85%	2378.6	1.72%	Pho4(bHLH)	A_NTG_S3
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	0.001	-9.208	2.00E-04	6535	4.61%	6090.7	4.41%	HOXA9(Homeobox)	A_NTG_S3
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	0.001	-9.077	2.00E-04	2297	1.62%	2074	1.50%	DMRT6(DM)	A_NTG_S3
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	0.001	-9.023	2.00E-04	712	0.50%	603.9	0.44%	SPL13(SBP)	A_NTG_S3
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	0.001	-8.912	3.00E-04	11965	8.44%	11299.9	8.17%	ERF8(AP2EREBP)	A_NTG_S3
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	0.001	-8.72	3.00E-04	1083	0.76%	945.8	0.68%	HOXA2(Homeobox)	A_NTG_S3
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	0.001	-8.624	4.00E-04	4240	2.99%	3915.1	2.83%	Rap210(AP2EREBP)	A_NTG_S3
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	0.001	-8.434	4.00E-04	5894	4.16%	5493.7	3.97%	ANAC005(NAC)	A_NTG_S3
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	0.001	-8.409	5.00E-04	7090	5.00%	6636.6	4.80%	ANAC096(NAC)	A_NTG_S3
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	0.001	-8.178	6.00E-04	6046	4.26%	5643.1	4.08%	ATHB7(Homeobox)	A_NTG_S3
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	0.001	-8.168	6.00E-04	4801	3.39%	4456.2	3.22%	At1g76110(ARID)	A_NTG_S3
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	0.001	-8.166	6.00E-04	693	0.49%	591.8	0.43%	p73(p53)	A_NTG_S3
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	0.001	-8.129	6.00E-04	7529	5.31%	7062.5	5.11%	HAT2(Homeobox)	A_NTG_S3
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	0.001	-8.067	6.00E-04	7397	5.22%	6937	5.02%	NAC2(NAC)	A_NTG_S3
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	0.001	-8.053	6.00E-04	6302	4.45%	5890.5	4.26%	NTM2(NAC)	A_NTG_S3
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	0.001	-7.989	7.00E-04	33034	23.30%	31687.6	22.92%	RAP211(AP2EREBP)	A_NTG_S3
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	0.001	-7.927	7.00E-04	28020	19.76%	26831.9	19.41%	Hoxd11(Homeobox)	A_NTG_S3
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	0.001	-7.903	7.00E-04	832	0.59%	720.7	0.52%	Unknown4	A_NTG_S3
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	0.001	-7.832	8.00E-04	261	0.18%	205.8	0.15%	EFL-1(E2F)	A_NTG_S3
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	0.001	-7.784	8.00E-04	4316	3.04%	4001.6	2.89%	Tcf7(HMG)	A_NTG_S3
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	0.001	-7.701	9.00E-04	6603	4.66%	6185.5	4.47%	Unknown6	A_NTG_S3
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	0.001	-7.678	9.00E-04	2375	1.68%	2163.5	1.56%	MYNN(Zf)	A_NTG_S3
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	0.001	-7.524	0.0011	9764	6.89%	9220.9	6.67%	ZNF264(Zf)	A_NTG_S3
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	0.001	-7.52	0.0011	11267	7.95%	10665.8	7.72%	KANADI1(Myb)	A_NTG_S3
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	0.001	-7.336	0.0013	6505	4.59%	6099.1	4.41%	ANAC020(NAC)	A_NTG_S3
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	0.001	-7.326	0.0013	7481	5.28%	7034.5	5.09%	VND4(NAC)	A_NTG_S3
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	0.001	-7.306	0.0013	25052	17.67%	23982.6	17.35%	dof24(C2C2dof)	A_NTG_S3
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	0.001	-7.299	0.0013	6	0.00%	0	0.00%	REM16(ABI3VP1)	A_NTG_S3
SeqBias: polyC-repeat	CCCCCCCCCC	0.001	-7.261	0.0014	141544	99.84%	137975.4	99.81%	SeqBias: polyC-repeat	A_NTG_S3
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	0.001	-7.224	0.0014	17870	12.61%	17040.5	12.33%	EAR2(NR)	A_NTG_S3
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	0.001	-7.18	0.0015	3168	2.23%	2920.7	2.11%	At1g22810(AP2EREBP)	A_NTG_S3
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	0.01	-6.582	0.0027	15004	10.58%	14295.6	10.34%	GRF9(GRF)	A_NTG_S3
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	0.01	-6.53	0.0028	7135	5.03%	6721.1	4.86%	AT3G25990(Trihelix)	A_NTG_S3
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	0.01	-6.516	0.0029	5964	4.21%	5599.8	4.05%	MYB105(MYB)	A_NTG_S3
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	0.01	-6.481	0.003	1355	0.96%	1218.8	0.88%	IDD2(C2H2)	A_NTG_S3
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	0.01	-6.471	0.003	41	0.03%	24	0.02%	bZIP42(bZIP)	A_NTG_S3
"NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer"	GGGGGAATCCCC	0.01	-6.432	0.0031	1459	1.03%	1316.7	0.95%	"NFkB-p50,p52(RHD)"	A_NTG_S3
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	0.01	-6.424	0.0031	11094	7.83%	10530.3	7.62%	NFAT(RHD)	A_NTG_S3
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	0.01	-6.417	0.0031	2597	1.83%	2390.9	1.73%	LBD2(LOBAS2)	A_NTG_S3
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	0.01	-6.384	0.0032	324	0.23%	267.3	0.19%	SPL3(SBP)	A_NTG_S3
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	0.01	-6.359	0.0033	385	0.27%	322.3	0.23%	ZNF382(Zf)	A_NTG_S3
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	0.01	-6.248	0.0037	7657	5.40%	7229.9	5.23%	SND3(NAC)	A_NTG_S3
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	0.01	-6.239	0.0037	1461	1.03%	1320.5	0.96%	GATA6(C2C2gata)	A_NTG_S3
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	0.01	-6.087	0.0043	1184	0.84%	1062.6	0.77%	ATHB18(Homeobox)	A_NTG_S3
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	0.01	-6.068	0.0044	3204	2.26%	2972.2	2.15%	SPL5(SBP)	A_NTG_S3
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	0.01	-6.017	0.0046	5072	3.58%	4756.9	3.44%	At2g41835(C2H2)	A_NTG_S3
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	0.01	-5.925	0.0051	4205	2.97%	3929.6	2.84%	ANAC103(NAC)	A_NTG_S3
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	0.01	-5.923	0.0051	2015	1.42%	1846.8	1.34%	TOD6?	A_NTG_S3
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	0.01	-5.887	0.0052	4244	2.99%	3967.5	2.87%	ANAC004(NAC)	A_NTG_S3
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	0.01	-5.872	0.0053	6077	4.29%	5722.1	4.14%	ANAC047(NAC)	A_NTG_S3
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	0.01	-5.869	0.0053	11152	7.87%	10603.8	7.67%	ABR1(AP2EREBP)	A_NTG_S3
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	0.01	-5.869	0.0053	6869	4.85%	6482.3	4.69%	ANAC083(NAC)	A_NTG_S3
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	0.01	-5.845	0.0054	7186	5.07%	6787.1	4.91%	PRDM9(Zf)	A_NTG_S3
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	0.01	-5.835	0.0055	15396	10.86%	14700.4	10.63%	TATA-Box(TBP)	A_NTG_S3
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	0.01	-5.757	0.0059	6095	4.30%	5742.2	4.15%	ANAC050(NAC)	A_NTG_S3
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	0.01	-5.723	0.0061	2294	1.62%	2113.4	1.53%	AT3G16280(AP2EREBP)	A_NTG_S3
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	0.01	-5.712	0.0061	10406	7.34%	9889.3	7.15%	FoxD3(forkhead)	A_NTG_S3
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	0.01	-5.7	0.0062	3488	2.46%	3249.3	2.35%	ATHB53(HB)	A_NTG_S3
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	0.01	-5.572	0.007	30570	21.56%	29408.7	21.27%	Znf263(Zf)	A_NTG_S3
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	0.01	-5.364	0.0086	3604	2.54%	3366.2	2.43%	CArG(MADS)	A_NTG_S3
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	0.01	-5.34	0.0088	11956	8.43%	11396.5	8.24%	ERF4(AP2EREBP)	A_NTG_S3
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	0.01	-5.281	0.0094	13173	9.29%	12573	9.09%	CRF10(AP2EREBP)	A_NTG_S3
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	0.01	-5.247	0.0097	4293	3.03%	4027.1	2.91%	Prop1(Homeobox)	A_NTG_S3
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	0.01	-5.238	0.0097	10354	7.30%	9854.1	7.13%	ATHB6(Homeobox)	A_NTG_S3
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	0.01	-5.198	0.0101	1885	1.33%	1733.9	1.25%	JKD(C2H2)	A_NTG_S3
"PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer"	TGACCTTTGCCCCA	0.01	-5.041	0.0118	13435	9.48%	12835.8	9.28%	"PPARE(NR),DR1"	A_NTG_S3
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	0.01	-5.033	0.0119	17137	12.09%	16415.8	11.87%	AT5G05550(Trihelix)	A_NTG_S3
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	0.01	-4.976	0.0126	2406	1.70%	2231.4	1.61%	At4g28140(AP2EREBP)	A_NTG_S3
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	0.01	-4.967	0.0126	16915	11.93%	16203.7	11.72%	AT2G40260(G2like)	A_NTG_S3
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	0.01	-4.949	0.0129	617	0.44%	544.2	0.39%	GATA19(C2C2gata)	A_NTG_S3
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	0.01	-4.883	0.0137	3189	2.25%	2980	2.16%	ERF38(AP2EREBP)	A_NTG_S3
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	0.01	-4.868	0.0139	7547	5.32%	7161.8	5.18%	c-Myc(bHLH)	A_NTG_S3
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	0.01	-4.868	0.0139	3041	2.15%	2838.5	2.05%	EKLF(Zf)	A_NTG_S3
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	0.01	-4.809	0.0147	3628	2.56%	3400.2	2.46%	At4g36780(BZR)	A_NTG_S3
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	0.01	-4.771	0.0152	4066	2.87%	3820.4	2.76%	CES-1(Homeobox)	A_NTG_S3
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	0.01	-4.769	0.0152	4887	3.45%	4607	3.33%	GBF3(bZIP)	A_NTG_S3
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	0.01	-4.753	0.0154	6211	4.38%	5879.8	4.25%	ATHB40(HB)	A_NTG_S3
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	0.01	-4.673	0.0167	7705	5.43%	7319.7	5.29%	WRKY33(WRKY)	A_NTG_S3
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	0.1	-4.48	0.0202	26221	18.50%	25245.1	18.26%	Hoxa11(Homeobox)	A_NTG_S3
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	0.1	-4.248	0.0254	23287	16.43%	22411.7	16.21%	ASL18(LOBAS2)	A_NTG_S3
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	0.1	-4.233	0.0258	16900	11.92%	16222	11.73%	Hoxd13(Homeobox)	A_NTG_S3
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	0.1	-4.071	0.0303	19534	13.78%	18781.5	13.59%	COUP-TFII(NR)	A_NTG_S3
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	0.1	-4.062	0.0305	8766	6.18%	8363	6.05%	RAP212(AP2EREBP)	A_NTG_S3
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	0.1	-3.888	0.0362	9737	6.87%	9306.8	6.73%	LBD13(LOBAS2)	A_NTG_S3
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	0.1	-3.863	0.0371	4173	2.94%	3944.8	2.85%	ANAC079(NAC)	A_NTG_S3
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	0.1	-3.645	0.046	6420	4.53%	6113.1	4.42%	TEAD2(TEA)	A_NTG_S3
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	0.1	-3.594	0.0484	18907	13.34%	18198.3	13.16%	Knotted(Homeobox)	A_NTG_S3
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	0.1	-3.567	0.0496	640	0.45%	578.8	0.42%	At4g32800(AP2EREBP)	A_NTG_S3
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	0.1	-3.567	0.0496	11027	7.78%	10566.9	7.64%	WRKY25(WRKY)	A_NTG_S3