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["Software","Version","Docker image","Description"]
["SEAseq",2.1,"abralab/seaseq:v2.0.0","Single-End Analysis SEQuencing pipeline custom scripts, dependencies and settings. (https://github.com/stjude/seaseq)"]
["BamToGff","1.2.1","abralab/bamtogff:v1.2.1","BAMToGFF (https://github.com/stjude/BAM2GFF)"]
["BEDOPS","2.4.37","abralab/bedops:v2.4.37","BEDOPS (http://bedops.readthedocs.io/)"]
["BEDTools","2.25.0","abralab/bedtools:v2.25.0","BedTools (https://bedtools.readthedocs.io/)"]
["Bowtie","1.2.3","abralab/bowtie:v1.2.3","bowtie (http://bowtie-bio.sourceforge.net)"]
["FASTQC","0.11.9","abralab/fastqc:v0.11.9","FastQC tool (https://www.bioinformatics.babraham.ac.uk/projects/fastqc/)"]
["igvtools","2.8.2","abralab/igvtools:v2.8.2","igvtools (https://software.broadinstitute.org/software/igv/igvtools)"]
["MACS","1.4.2","abralab/macs:v1.4.2","MACS (http://github.com/macs3-project/MACS)"]
["MEME Suite","5.3.3","abralab/memesuite:v5.3.3","MEME Suite (http://meme-suite.org/)"]
["ROSE","1.3.0","abralab/rose:v1.3.0","Rank Ordering of Super-enhancers (https://github.com/stjude/ROSE)"]
["SAMTools",1.9,"abralab/samtools:v1.9","SAMtools (http://samtools.sourceforge.net/)"]
["Sicer2","1.0.2","abralab/sicer:v1.0.2","SICER2 (https://zanglab.github.io/SICER2/)"]
["SPP","1.16.0","abralab/spp:v1.16.0","SPP (http://www.encodeproject.org/software/spp)"]
["SRAToolkit","2.9.6","abralab/sratoolkit:v2.9.6","SRA-Tools (https://ncbi.github.io/sra-tools/)"]
["wigToBigWig",4,"abralab/wigtobigwig:v4","wigToBigWig (https://www.encodeproject.org/software/wigtobigwig/)"]