Table S15. All SNPs in LD with the two top GWAS SNPs in GSDs within the candidate region: CFA27 18,804,142-19,142,893 Chr Position Comments Selected for genotyping (122 SNP set) Genotyped in Tengvall, 2013 (p after perm) mapped to human? (position) dog ref allele T1 T2 T6 T7 T8 perfect pattern chr27 18804142 0,0147 33312073 A A A G G G yes chr27 18805428 C T T C C C yes chr27 18805592 33309397 A A A T T T yes chr27 18805663 33309325 A A A C C C yes chr27 18805785 33309200 C C C T T T yes chr27 18805858 33309105 T T T C C C yes chr27 18805907 cons human-dog, controls=human=ref yes 33309056 T T T C C C yes chr27 18806158 33308782 T T T A A A yes chr27 18806162 33308778 G G G A R R yes chr27 18806364 33308450 G A A G G G yes chr27 18806574 match pools yes 33308263 G G G A R R yes chr27 18806677 33308160 A A A G G G yes chr27 18806735 33308125 C C C T T T yes chr27 18807047 G G G C C C yes chr27 18807083 A A A G G G yes chr27 18807384 A A A G R R yes chr27 18807575 T T T C C C yes chr27 18807584 G G G A R R yes chr27 18807737 T T T G K K yes chr27 18808449 match pools yes 33305358 G G G A A A yes chr27 18808836 33303985 T T T G G G yes chr27 18808853 33303968 T T T C C C yes chr27 18808891 33303934 A A A G G G yes chr27 18808897 33303928 G G G C C C yes chr27 18809076 33303769 T T T G G G yes chr27 18809105 33303740 T T T C Y Y yes chr27 18809428 A A A G R R yes chr27 18809640 A A A T W W yes chr27 18809816 33303231 G G G A R R yes chr27 18809993 G G G C S S yes chr27 18810120 A A A G G G yes chr27 18810353 T C C T T T yes chr27 18810431 T T T C C C yes chr27 18810450 C A A C M M yes chr27 18810557 G T T G K K yes chr27 18810560 A G G A R R yes chr27 18811196 A A A G R R yes chr27 18811315 33303010 T T T C Y Y yes chr27 18811477 33302850 C C C T Y Y yes chr27 18811498 33302829 T A A T T T yes chr27 18811861 33302433 G G G A R R yes chr27 18814073 C T T C C C yes chr27 18816013 C C C T Y Y yes chr27 18816602 A A A G R R yes chr27 18816656 C T T C C C yes chr27 18818719 G G G A R R yes chr27 18820670 T A A T T T yes chr27 18820947 33292284 C C C T T T yes chr27 18822981 33290490 A A A T T T yes chr27 18822997 match pools, in a LINE yes 33290474 G G G T K K yes chr27 18827867 from pools, perfect match, not mapped in human yes G G G A R R yes chr27 18827900 T T T C C C yes chr27 18827906 A A A G R R yes chr27 18827970 33285049 T T T C C C yes chr27 18828098 33284935 C T T C C C yes chr27 18828699 33284317 C C C A A A yes chr27 18828956 33284025 A A A G G G yes chr27 18829121 33283857 C C C T T T yes chr27 18829893 33282800 T T T C Y Y yes chr27 18830046 33282652 G G G A A A yes chr27 18830175 33282518 T T T C C C yes chr27 18830707 33281992 A A A T T T yes chr27 18830938 33281762 C C C T T T yes chr27 18830947 33281753 G G G A A A yes chr27 18831026 33281674 A A A G G G yes chr27 18831501 33281175 G G G A A A yes chr27 18831826 33280853 G A A G G G yes chr27 18832075 33280399 G G G A A A yes chr27 18833268 33279191 C C C T T T yes chr27 18833450 33279006 A A A C C C yes chr27 18833648 T T T C C C yes chr27 18834138 33278609 C A A C C C yes chr27 18834191 33278556 C T T C C C yes chr27 18834510 33278237 T C C T T T yes chr27 18844105 match pools , not mapped in human yes T T T G G G yes chr27 18845998 33271027 A A A C C C yes chr27 18846078 33270947 T T T A A A yes chr27 18847466 33269623 C C C A A A yes chr27 18848062 C C C T T T yes chr27 18852174 A A A G G G yes chr27 18852176 G G G A A A yes chr27 18852199 A A A C C C yes chr27 18852208 A A A G G G yes chr27 18852360 T T T C C C yes chr27 18852415 33268749 G G G A A A yes chr27 18852795 33268414 A A A G G G yes chr27 18853271 33267949 A A A G G G yes chr27 18853290 33267930 C T T C C C yes chr27 18853410 33267809 T A A T T T yes chr27 18853726 33267527 C C C T T T yes chr27 18853743 33267510 A A A C C C yes chr27 18855141 33266620 G G G A A A yes chr27 18856108 C C C T T T yes chr27 18856137 G G G A A A yes chr27 18856280 A A A G G G yes chr27 18857197 match pools, not mapped in human yes C C C T T T yes chr27 18857397 G A A G G G yes chr27 18857480 T T T C C C yes chr27 18858029 G G G T T T yes chr27 18859704 33265304 T T T C C C yes chr27 18861106 33253772 C C C T T T yes chr27 18861228 GWAS SNP (top2) yes 0,000069 33253366 A C C A A A yes chr27 18861275 33253319 T C C T T T yes chr27 18861313 33253280 G A A G G G yes chr27 18861390 cons reg dog-human, controls=human, not ref yes 33253200 G A A G G G yes chr27 18861533 33253057 G T T G G G yes chr27 18861693 33252962 G A A G G G yes chr27 18861761 T C C T T T yes chr27 18861774 C T T C C C yes chr27 18861795 C C C T T T yes chr27 18861967 G A A G G G yes chr27 18862058 cons human-dog, controls=human=ref yes 33251659 G G G A A A yes chr27 18862133 33251580 A G G A A A yes chr27 18862160 33251552 G A A G G G yes chr27 18862223 33251490 G G G A A A yes chr27 18862309 G G G A A A yes chr27 18862439 match pools , not mapped in human yes 33250197 C C C T T T yes chr27 18862466 33250170 A G G A A A yes chr27 18862468 33250168 T A A T T T yes chr27 18862729 33249911 C C C T T T yes chr27 18862731 33249909 G G G A A A yes chr27 18862749 33249891 A G G A A A yes chr27 18862753 33249887 A C C A A A yes chr27 18862859 33249833 A G G A A A yes chr27 18862902 33249790 A A A C C C yes chr27 18862997 33249691 G G G A A A yes chr27 18863101 33249589 A A A G G G yes chr27 18864159 33248522 A A A G G G yes chr27 18864418 33247894 C C C T T T yes chr27 18864463 33247848 T T T C C C yes chr27 18865188 C C C G G G yes chr27 18866924 T T T C C C yes chr27 18867109 33245590 T T T A A A yes chr27 18867167 33245526 C G G C C C yes chr27 18867186 33245507 A A A G G G yes chr27 18867196 33245493 C C C T T T yes chr27 18867680 33244997 G A A G G G yes chr27 18868015 33244665 T C C T T T yes chr27 18868033 33244645 G A A G G G yes chr27 18868160 33244502 A G G A A A yes chr27 18868365 33244268 G A A G G G yes chr27 18868375 33244258 T C C T T T yes chr27 18868585 33244059 C G G C C C yes chr27 18868628 33244026 T T T C C C yes chr27 18868631 33244023 A A A G G G yes chr27 18868968 C C C T T T yes chr27 18869132 33240528 T T T C Y Y yes chr27 18869611 C T T C C C yes chr27 18869711 A T T A A A yes chr27 18870054 33239523 G G G C C C yes chr27 18870354 33239237 G T T G G G yes chr27 18870926 C C C T T T yes chr27 18870982 G G G A A A yes chr27 18870992 match pools , not mapped in human yes T T T C C C yes chr27 18871320 C C C T T T yes chr27 18872117 4005229 C T T C C C yes chr27 18872359 4004988 G G G A A A yes chr27 18873670 G G G C C C yes chr27 18874358 prev genotyped, for comparison yes 0,0024 33235770 A C C A A A yes chr27 18874787 A A A G R R yes chr27 18875109 in cons region dog-human, but base not cons yes 33235014 A A A C M M yes chr27 18877128 A G G A A A yes chr27 18879678 C T T C C C yes chr27 18879983 C G G C C C yes chr27 18880019 T C C T T T yes chr27 18880048 C T T C C C yes chr27 18880066 G G G A A A yes chr27 18880206 A A A G G G yes chr27 18880245 T G G T T T yes chr27 18880443 C A A C C C yes chr27 18880582 T G G T T T yes chr27 18880591 T C C T T T yes chr27 18881322 C T T C C C yes chr27 18881359 C T T C C C yes chr27 18881406 G G G A R R yes chr27 18881477 T T T C C C yes chr27 18882703 33214145 T T T C C C yes chr27 18882988 33213854 T T T C Y Y yes chr27 18883035 33213807 C A A C C C yes chr27 18884947 33211920 T T T C Y Y yes chr27 18885033 33211833 G T T G G G yes chr27 18886332 G A A G G G yes chr27 18886799 33209970 T T T A W W yes chr27 18887428 33207886 T T T A W W yes chr27 18887604 G G G T T T yes chr27 18887606 T T T G G G yes chr27 18887672 T C C T T T yes chr27 18887717 A A A G G G yes chr27 18887833 A G G A A A yes chr27 18888034 A A A G G G yes chr27 18888217 C C C G S S yes chr27 18888396 A G G A A A yes chr27 18888951 A A A G G G yes chr27 18888970 G G G A R R yes chr27 18889197 A A A T T T yes chr27 18889262 T T T C Y Y yes chr27 18889274 G A A G G G yes chr27 18889467 A G G A A A yes chr27 18889497 33207727 G G G A A A yes chr27 18890382 33206877 A A A G R R yes chr27 18890479 33206780 G G G T K K yes chr27 18891395 G A A G R R yes chr27 18891587 T T T A W W yes chr27 18892590 match pools, in a LINE yes 33203704 G G G T K K yes chr27 18893597 33202675 C C C A M M yes chr27 18894291 C C C A M M yes chr27 18895489 33200105 A T T A W W yes chr27 18895636 33199960 A A A T W W yes chr27 18895813 33199760 G A A G R R yes chr27 18896524 33199235 T T T C Y Y yes chr27 18897116 33198637 A A A G R R yes chr27 18897237 G G G A R R yes chr27 18897351 G G G A R R yes chr27 18897369 C C C T Y Y yes chr27 18897430 T T T C Y Y yes chr27 18897487 A A A G R R yes chr27 18897532 C C C G S S yes chr27 18897622 A G G A R R yes chr27 18897701 match pools , not mapped in human yes C C C G S S yes chr27 18897707 T T T G K K yes chr27 18897749 T T T A W W yes chr27 18897800 G G G A R R yes chr27 18897999 A A A G R R yes chr27 18898007 33198372 A A A C M M yes chr27 18898047 33198326 T C C T Y Y yes chr27 18898085 33198293 C A A C M M yes chr27 18898205 33198163 G G G C S S yes chr27 18898694 A T T A A W yes chr27 18899249 33197554 A G G A R R yes chr27 18899702 33196770 G G G A R R yes chr27 18899955 33196529 A G G A R R yes chr27 18900232 33196252 A G G A R R yes chr27 18900265 33196219 C T T C Y Y yes chr27 18900775 33195737 A A A T W W yes chr27 18900942 33195571 C T T C Y Y yes chr27 18900953 33195560 G G G A R R yes chr27 18901479 33195048 A A A T W W yes chr27 18901506 33195021 C C C T Y Y yes chr27 18901641 33194871 C C C T Y Y yes chr27 18901660 33194850 C C C A M M yes chr27 18901712 33194798 G G G T K K yes chr27 18901755 C C C T Y Y yes chr27 18901785 G G G A R R yes chr27 18901851 T T T C Y Y yes chr27 18901862 C C C T Y Y yes chr27 18901906 T T T C Y Y yes chr27 18902286 33194340 G A A G R R yes chr27 18902320 33194306 A A A C M M yes chr27 18902354 33194274 T T T C Y Y yes chr27 18902424 G G G A R R yes chr27 18902511 C G G C S S yes chr27 18902819 T T T C Y Y yes chr27 18902899 33193964 A A A G R R yes chr27 18902931 33193932 A A A T W W yes chr27 18902968 33193895 A A A T W W yes chr27 18903052 33193811 C C C A M M yes chr27 18903127 33193733 A A A G R R yes chr27 18903178 33193689 A G G A R R yes chr27 18903200 A T T A W W yes chr27 18903422 33193289 G G G A R R yes chr27 18903702 33193022 T T T A W W yes chr27 18903741 33192980 G G G A R R yes chr27 18904205 33192535 A C C A A A yes chr27 18904206 33192534 A C C A A A yes chr27 18904657 33192057 G G G T K K yes chr27 18904888 A A A C M M yes chr27 18905320 G A A G R R yes chr27 18905847 G G G A R R yes chr27 18906028 G G G A R R yes chr27 18906654 C C C T Y Y yes chr27 18906719 T T T C Y Y yes chr27 18906745 C C C T Y Y yes chr27 18906795 A A A C M M yes chr27 18906812 G G G T K K yes chr27 18906906 C C C T Y Y yes chr27 18906920 A A A G R R yes chr27 18907010 A A A G R R yes chr27 18907097 A A A C M M yes chr27 18907210 match pools , not mapped in human yes C C C T Y Y yes chr27 18907992 G G G T K K yes chr27 18908039 T T T C Y Y yes chr27 18908081 A A A G R R yes chr27 18908255 C C C T Y Y yes chr27 18908521 T T T C Y Y yes chr27 18908558 T T T A W W yes chr27 18908562 match pools , not mapped in human yes C C C T Y Y yes chr27 18908599 G G G T K K yes chr27 18908655 A A A T W W yes chr27 18908812 G G G A R R yes chr27 18908852 G C C G S S yes chr27 18908869 A G G A R R yes chr27 18908880 C C C A M M yes chr27 18908918 C G G C S S yes chr27 18908958 cons dog human, controls=ref=human yes 33191777 A A A T W W yes chr27 18908989 33191747 C G G C S S yes chr27 18909540 33191213 A G G A R R yes chr27 18909561 33191192 T T T C Y Y yes chr27 18909673 33191081 A A A G R R yes chr27 18909704 33191050 C A A C M M yes chr27 18909761 33191002 A A A G R R yes chr27 18909840 match pools, not cons yes 33190919 A A A T W W yes chr27 18909847 33190912 G G G A R R yes chr27 18910154 33190619 A A A G R R yes chr27 18910845 33189956 T C C T Y Y yes chr27 18910929 33189876 C C C T Y Y yes chr27 18911682 33189122 G G G T K K yes chr27 18911970 33188826 C G G C S S yes chr27 18912077 33188786 G A A G R R yes chr27 18912139 C T T C Y Y yes chr27 18912265 33188680 C C C T Y Y yes chr27 18912943 33184382 A A A G R R yes chr27 18913346 33184011 A A A C M M yes chr27 18913373 33183982 A A A G R R yes chr27 18913589 33183763 C G G C S S yes chr27 18913594 33183758 G A A G R R yes chr27 18914155 33183199 A A A G R R yes chr27 18914301 33183055 G G G C S S yes chr27 18915046 33182311 C C C G S S yes chr27 18915620 G C C G S S yes chr27 18915670 33181541 G A A G R R yes chr27 18916144 33180992 A A A T W W yes chr27 18916846 33180205 T T T C Y Y yes chr27 18917097 cons dog human, controls=ref=human yes 33179941 T T T C Y Y yes chr27 18917502 G G G C S S yes chr27 18917503 G G G T K K yes chr27 18917548 C C C T Y Y yes chr27 18917930 T C C T T T yes chr27 18919552 A A A C M M yes chr27 18920067 light cons, good match yes 33178075 G G G A R R yes chr27 18921568 33174794 C C C G S S yes chr27 18921921 G G G A R R yes chr27 18922125 G G G C S S yes chr27 18922279 A A A C M M yes chr27 18922295 C C C T Y Y yes chr27 18923266 T T T A A A yes chr27 18925907 region not mapped in other species yes C C C A M M yes chr27 18925992 A A A G R R yes chr27 18927404 A A A G R R yes chr27 18928643 G G G A R R yes chr27 18928691 A A A G R R yes chr27 18928697 T T T C Y Y yes chr27 18928883 G G G T K K yes chr27 18929123 33173420 A A A G R R yes chr27 18929125 33173418 A A A G R R yes chr27 18929181 G G G T K K yes chr27 18929201 T T T C Y Y yes chr27 18929210 A A A G R R yes chr27 18929882 33169013 C C C T Y Y yes chr27 18929902 33169000 C C C T Y Y yes chr27 18929913 33168989 T T T C Y Y yes chr27 18930158 cons dog human, controls=ref=human yes 33168744 A A A G R R yes chr27 18931372 33165182 C A A C M M yes chr27 18931782 33164780 A A A G G G yes chr27 18932203 33163979 A A A T W W yes chr27 18932240 33163944 A A A G G G yes chr27 18932409 33161254 T T T C C C yes chr27 18932419 33161244 A G G A A A yes chr27 18932423 33161240 A G G A A A yes chr27 18932426 33161237 T C C T T T yes chr27 18932657 33161033 C T T C C C yes chr27 18932707 33160982 A A A G G G yes chr27 18932728 33160962 T A A T T T yes chr27 18932852 33160815 G T T G G G yes chr27 18932881 cons dog human, controls=ref=human yes 33160786 A A A C M M yes chr27 18932887 cons dog-human, controls=human, ref = case yes 33160780 A G G A A A yes chr27 18932894 33160773 G A A G G G yes chr27 18933014 C C C A A A yes chr27 18933059 G G G T T T yes chr27 18933084 C C C T T T yes chr27 18933216 33160656 A A A C M M yes chr27 18933318 33160557 T T T C C C yes chr27 18933641 33160262 A A A C C C yes chr27 18933713 33160185 C C C G G G yes chr27 18933729 33160169 C C C T T T yes chr27 18934038 best assoc SNP finemap- block 7 yes 0,000031 33159862 G T T G G G yes chr27 18934219 best assoc SNP finemap- block 7 yes 0,000031 33159658 C A A C C C yes chr27 18934303 cons dog-human, controls=human, ref = case yes 33159586 C G G C C C yes chr27 18934658 seq not in other spec. cases=ref G T T G G G yes chr27 18934702 33158757 G A A G G G yes chr27 18934730 33158724 G A A G G G yes chr27 18934894 33158455 G C C G G G yes chr27 18935990 33157759 G A A G G G yes chr27 18936170 33157622 A G G A A A yes chr27 18936358 cons dog human, controls=ref=human yes 33154570 G G G A A A yes chr27 18936592 cons dog-human, cases = ref = human� yes 33154327 A G G A A A yes chr27 18937647 C C C T Y Y yes chr27 18937891 T T T C C C yes chr27 18937936 T T T C C C yes chr27 18938167 G A A G G G yes chr27 18938280 T T T G K K yes chr27 18938420 33145973 A A A G R R yes chr27 18938444 G T T G G G yes chr27 18940005 match pools yes 33147218 G G G T K K yes chr27 18940463 33147690 A G G A A A yes chr27 18941024 33148260 A T T A A A yes chr27 18941383 cons dog human, controls=ref=human yes 33148637 T G G T T T yes chr27 18942096 33149346 C C C T T T yes chr27 18942145 A A A G G G yes chr27 18942454 cons dog-human, cases = ref = human� yes 33149518 T A A T T T yes chr27 18943045 33150127 A C C A A A yes chr27 18943160 A G G A A A yes chr27 18943273 C C C A A A yes chr27 18943539 33150384 C C C T T T yes chr27 18945207 C G G C C C yes chr27 18945411 G T T G G G yes chr27 18945749 cons dog human, controls=ref=human yes 33152478 G A A G G G yes chr27 18946872 T C C T T T yes chr27 18947138 G A A G G G yes chr27 18947147 A C C A A A yes chr27 18947180 G G G A A A yes chr27 18947203 G G G C C C yes chr27 18947222 G G G C C C yes chr27 18947297 A C C A A A yes chr27 18947430 T C C T T T yes chr27 18947443 C A A C C C yes chr27 18947708 T C C T T T yes chr27 18947770 C C C T T T yes chr27 18947778 T T T C C C yes chr27 18947907 C C C A A A yes chr27 18948090 C C C A M M yes chr27 18948308 G G G A A A yes chr27 18948579 C C C A A A yes chr27 18948758 T C C T T T yes chr27 18948803 G T T G G G yes chr27 18949351 G C C G G G yes chr27 18949367 A G G A A A yes chr27 18949416 G T T G G G yes chr27 18949456 A G G A A A yes chr27 18949679 C C C G G G yes chr27 18949708 T T T C C C yes chr27 18950601 G G G A A A yes chr27 18950822 G G G A A A yes chr27 18951104 T A A T T T yes chr27 18951119 G T T G G G yes chr27 18951314 G G G T T T yes chr27 18951626 A A A G R R yes chr27 18951725 C G G C C C yes chr27 18951947 match pools , not mapped in human yes T T T C C C yes chr27 18952948 C T T C C C yes chr27 18952964 A C C A A A yes chr27 18952990 A A A G G G yes chr27 18955531 33143206 T T T C Y Y yes chr27 18962075 33136167 A G G A A A yes chr27 18964049 block 7 yes 0,000094 33134719 C A A C C C yes chr27 18965475 block 7 yes 0,000094 33133267 A C C A A A yes chr27 18967960 G G G T K K yes chr27 18968748 51409604 A A A T T T yes chr27 18969383 33130653 C T T C C C yes chr27 18969803 A G G A A A yes chr27 18970024 T C C T T T yes chr27 18970316 T A A T T T yes chr27 18970317 C T T C C C yes chr27 18970371 C T T C C C yes chr27 18970396 G A A G G G yes chr27 18970526 33129101 C G G C C C yes chr27 18970587 33129042 G T T G G G yes chr27 18970613 T C C T T T yes chr27 18970720 33128926 G A A G G G yes chr27 18970918 33128719 T G G T T T yes chr27 18970952 33128681 C T T C C C yes chr27 18971130 33128497 C T T C C C yes chr27 18971139 33128488 G A A G G G yes chr27 18971248 33128379 T A A T T T yes chr27 18971293 33128335 A G G A A A yes chr27 18971433 33128199 T C C T T T yes chr27 18971455 33128177 G A A G G G yes chr27 18971497 33128135 C T T C C C yes chr27 18971510 33128122 G A A G G G yes chr27 18971642 33128001 A T T A A A yes chr27 18973286 33125771 G A A G G G yes chr27 18973368 33125690 T G G T T T yes chr27 18973585 33125170 C A A C C C yes chr27 18973923 A G G A A A yes chr27 18973977 A T T A A A yes chr27 18974021 33124996 A G G A A A yes chr27 18975022 33123980 G A A G G G yes chr27 18975038 33123962 C T T C C C yes chr27 18975270 T A A T T T yes chr27 18975818 T G G T T T yes chr27 18976578 T C C T T T yes chr27 18979905 G A A G G G yes chr27 18982462 C C C A M M yes chr27 18982524 A A A G R R yes chr27 18982680 match pools, not to interesting in human� yes 33123634 G G G C S S yes chr27 18984900 33121429 C C C G S S yes chr27 18986006 33120266 T A A T T T yes chr27 18986272 33120226 A A A T W W yes chr27 18987281 A A A G R R yes chr27 18987305 G G G T K K yes chr27 18987579 33119857 T T T C Y Y yes chr27 18987858 33119584 C C C A M M yes chr27 18988709 G G G T K K yes chr27 18989983 33117807 A A A G R R yes chr27 18990907 G A A G G G yes chr27 18991313 33117400 G G G A A A yes chr27 18991781 C C C T Y Y yes chr27 18992794 33115666 G G G A R R yes chr27 18993444 C C C A A M yes chr27 18993646 33107306 G A A G G G yes chr27 18993858 33106790 A A A C C C yes chr27 18993871 33106776 T T T G G G yes chr27 18993878 33106769 C C C T T T yes chr27 18994077 33106589 C T T C C C yes chr27 18994429 33106175 A G G A A A yes chr27 18994469 33106134 C T T C Y Y yes chr27 18994713 A A A G G G yes chr27 18994942 33105919 G T T G K K yes chr27 18995321 33105472 T C C T T T yes chr27 18995822 33104779 A G G A R R yes chr27 18995839 33104755 C T T C Y Y yes chr27 18995914 33104670 C T T C Y Y yes chr27 18995915 33104669 A T T A W W yes chr27 18995919 33104665 T C C T Y Y yes chr27 18996033 33104549 A G G A R R yes chr27 18997789 T A A T T T yes chr27 18997813 A C C A M M yes chr27 18998204 33103727 G C C G S S yes chr27 18998996 33102595 C T T C Y Y yes chr27 18999659 A A A W T T yes chr27 19000511 33100771 C G G C S S yes chr27 19000708 33100575 A G G A A A yes chr27 19000864 33100416 A A A G R R yes chr27 19001827 33098421 T A A T W W yes chr27 19002252 33097978 T C C T Y Y yes chr27 19002355 C A A C M M yes chr27 19003081 A A A T T T yes chr27 19003084 A A A G G G yes chr27 19003352 G A A G R R yes chr27 19003552 A C C A M M yes chr27 19003633 33097537 T A A T W W yes chr27 19003909 G T T G K K yes chr27 19004423 G A A G R R yes chr27 19005647 C A A C M M yes chr27 19005975 33093136 G C C G S S yes chr27 19006368 A T T A A A yes chr27 19006477 A A A T W W yes chr27 19006691 G G G A R R yes chr27 19007355 33091872 G G G A R R yes chr27 19007405 33091822 C C C A M M yes chr27 19007501 0,1284 33091734 A A A G R R yes chr27 19007549 33091686 A A A G R R yes chr27 19007642 match pools, looks cons in human browser yes 33091585 G G G C S S yes chr27 19007685 33091545 C C C A M M yes chr27 19007719 33091527 T T T C Y Y yes chr27 19007753 33091494 T T T A W W yes chr27 19007912 33091336 C C C T Y Y yes chr27 19008031 A A A C M M yes chr27 19008097 G G G A R R yes chr27 19008123 C C C T Y Y yes chr27 19008208 T T T G K K yes chr27 19008367 33085446 T T T C Y Y yes chr27 19008451 33085365 T T T C Y Y yes chr27 19008601 33085213 C C C T Y Y yes chr27 19008690 33085131 C C C T Y Y yes chr27 19009849 T T T A W W yes chr27 19010262 A A A G R R yes chr27 19010593 T C C T T T yes chr27 19010648 33080955 C C C T Y Y yes chr27 19010775 33080838 C C C A M M yes chr27 19010893 33080708 G G G C S S yes chr27 19010982 match pools, cons and K562, tomtomhit in dog yes 33080633 A A A T W W yes chr27 19011186 C C C T Y Y yes chr27 19011541 T T T C Y Y yes chr27 19011565 33079820 T T T C Y Y yes chr27 19011689 33079694 A A A G R R yes chr27 19011835 33079552 G G G T K K yes chr27 19011917 33079465 A A A G R R yes chr27 19012023 33079203 C C C T Y Y yes chr27 19012113 A A A G R R yes chr27 19012812 33078267 T T T C Y Y yes chr27 19013243 in human reg region yes 33075239 A A A C M M yes chr27 19013318 in human reg region yes 33075152 C C C T Y Y yes chr27 19013715 in human reg region yes 33074749 A G G A A A yes chr27 19013764 in human reg region yes 33074705 A C C A M M yes chr27 19013850 in human reg region yes 33074618 C T T C C C yes chr27 19014281 in human reg region yes 33073895 G A A G G G yes chr27 19015640 in human reg region yes 33071690 C G G C C C yes chr27 19016169 T A A T W W yes chr27 19016180 C T T C Y Y yes chr27 19016182 C T T C Y Y yes chr27 19016519 33071046 A G G A A A yes chr27 19016565 A G G A R A yes chr27 19016602 T T T C Y Y yes chr27 19017040 in human reg region yes 33070420 G G G A R R yes chr27 19017153 in human reg region yes 33070307 A A A G R R yes chr27 19017415 in human reg region yes 33070015 G G G A R R yes chr27 19018074 33067092 G G G A R R yes chr27 19018182 G G G T K K yes chr27 19018357 33066717 T G G T K K yes chr27 19018401 T T T C Y Y yes chr27 19018572 G T T G K K yes chr27 19018600 T C C T Y Y yes chr27 19018643 T C C T Y Y yes chr27 19018691 C T T C Y C yes chr27 19018990 G A A G R R yes chr27 19019161 A A A G R R yes chr27 19019178 T T T A W W yes chr27 19019611 33066032 A A A T W W yes chr27 19020462 T T T C Y Y yes chr27 19020466 C C C T Y Y yes chr27 19021017 0,1284 33063043 C T T C Y Y yes chr27 19021514 33062559 T T T A W W yes chr27 19021688 33062361 C C C T Y Y yes chr27 19022078 33061650 T C C T Y Y yes chr27 19022170 33061066 C T T C Y Y yes chr27 19022644 C A A C M M yes chr27 19022680 A G G A R R yes chr27 19024667 C C C T Y Y yes chr27 19024709 33058934 C C C T Y Y yes chr27 19025353 C C C G S S yes chr27 19025847 A A A G R R yes chr27 19025934 C T T C C C yes chr27 19026095 G G G T K K yes chr27 19026153 A T T A W W yes chr27 19026624 33058300 T T T C Y Y yes chr27 19027425 33057064 G A A G G G yes chr27 19028522 33056096 C A A C M M yes chr27 19028659 33055980 A A A R R R yes chr27 19028683 33055956 G G G K K K yes chr27 19028712 33055926 G A A G G G yes chr27 19028915 cons dog-human, good pattern close to candidate mut yes 33055702 A C C A A A yes chr27 19028974 C C C A M M yes chr27 19029049 C C C T Y Y yes chr27 19029082 G A A G G G yes chr27 19029163 G G G C S S yes chr27 19029871 33055199 A A A G R R yes chr27 19030147 in human reg region yes 33055123 G A A G R R yes chr27 19030403 G C C G G G yes chr27 19031106 in human reg region yes 33054056 C C C A M M yes chr27 19031514 in human reg region yes 33053321 A G G A R R yes chr27 19031583 in human reg region yes 33053257 G A A G R R yes chr27 19031586 in human reg region yes 33053254 G A A G G G yes chr27 19031796 in human reg region yes 33051787 C C C T Y Y yes chr27 19031839 in human reg region yes 33051745 G A A G G G yes chr27 19032172 in human reg region yes 33051386 C T T C C C yes chr27 19032261 in human reg region yes 33051298 T G G T T T yes chr27 19032742 in human reg region yes 33050676 C T T C C C yes chr27 19032875 in human reg region yes 33050541 A T T A A A yes chr27 19033054 in human reg region yes 33050364 C G G C S S yes chr27 19034176 in human reg region yes 33049369 G C C G S S yes chr27 19034596 in human reg region yes 33048968 T G G T K K yes chr27 19036266 in human reg region yes 33047658 A G G A R R yes chr27 19036419 T C C T Y Y yes chr27 19036595 T A A T W W yes chr27 19036596 T A A T W W yes chr27 19036825 G A A G R R yes chr27 19037224 in human reg region yes 33046783 C T T C Y Y yes chr27 19045925 33034803 G T T G K K yes chr27 19046154 33034253 G A A G R R yes chr27 19047155 33032950 G A A G R R yes chr27 19047170 T C C T Y Y yes chr27 19047737 33031809 G A A G R R yes chr27 19048938 0,0005 33030767 C C C T T T yes chr27 19049048 0,0005 33030658 G G G A A A yes chr27 19049297 33030419 A A A C M M yes chr27 19049706 33030119 G A A G R R yes chr27 19050857 33028866 T G G T K K yes chr27 19051100 33028622 A G G A R R yes chr27 19051179 A G G A R R yes chr27 19051338 33028452 C T T C Y Y yes chr27 19051351 33028439 T C C T Y Y yes chr27 19051405 33028375 C T T C Y Y yes chr27 19051575 33028233 A G G A R R yes chr27 19051670 33028133 G A A G R R yes chr27 19051746 33028055 T C C T Y Y yes chr27 19051862 33027632 C T T C Y Y yes chr27 19052038 33027506 G A A G R R yes chr27 19052050 cons dog-human yes 33027494 A T T A W W yes chr27 19052204 33027321 G A A G R R yes chr27 19052259 33027284 T A A T W W yes chr27 19052402 33027151 C T T C C Y yes chr27 19052449 33027104 G A A G R R yes chr27 19052484 33027079 G A A G R R yes chr27 19052738 in cons region but base not cons yes 33026858 C A A C M M yes chr27 19052835 33026442 C T T C Y Y yes chr27 19053153 33025779 C T T C Y Y yes chr27 19053238 33025692 C C C T Y Y yes chr27 19053291 33025644 C T T C Y Y yes chr27 19053569 33025059 A C C A M M yes chr27 19053658 33024951 T C C T Y Y yes chr27 19053892 33024135 A G G A R R yes chr27 19054034 33023951 A G G A R R yes chr27 19054621 C T T C Y Y yes chr27 19054622 T A A T W W yes chr27 19054630 A G G A R R yes chr27 19054767 33023367 C T T C Y Y yes chr27 19054975 33023142 A G G A R R yes chr27 19055014 C T T C Y Y yes chr27 19055039 A G G A R R yes chr27 19056254 C A A C M M yes chr27 19056290 C T T C Y Y yes chr27 19056466 A G G A R R yes chr27 19056614 G G G A R R yes chr27 19056620 A G G A R R yes chr27 19057295 C T T C Y Y yes chr27 19057508 T C C T Y Y yes chr27 19057968 A G G A R R yes chr27 19058145 C C C T Y Y yes chr27 19058173 T C C T Y Y yes chr27 19058220 A G G A R R yes chr27 19058321 C A A C M M yes chr27 19058679 C T T C Y Y yes chr27 19058910 G G G A R R yes chr27 19059208 A A A G R R yes chr27 19059364 A T T A W W yes chr27 19060083 T G G T K K yes chr27 19060282 33022596 A C C A A A yes chr27 19060963 G G G A R R yes chr27 19061878 T T T C Y Y yes chr27 19062012 G A A G R R yes chr27 19063592 G G G A R R yes chr27 19065142 33014607 C C C T Y Y yes chr27 19065198 T C C T T T yes chr27 19066630 33012236 C C C T Y Y yes chr27 19067356 G G G A R R yes chr27 19067544 33011381 A A A T T T yes chr27 19067992 0,0008 33010725 T C C T T T yes chr27 19068069 33010645 G G G A R R yes chr27 19068518 33010038 A G G A A A yes chr27 19069035 33009292 G G G A A A yes chr27 19069229 33009095 G G G A A A yes chr27 19069325 33008995 T A A T T T yes chr27 19069634 C C C T T T yes chr27 19070568 33007872 C C C T Y Y yes chr27 19070569 33007871 A A A G R R yes chr27 19070647 33007791 A G G A A A yes chr27 19071028 33007381 T T T C Y Y yes chr27 19071594 C T T C Y Y yes chr27 19071881 G A A G G G yes chr27 19071889 33006056 C T T C C C yes chr27 19072058 33005606 G A A G G G yes chr27 19072116 C T T C C C yes chr27 19072506 A A A T T T yes chr27 19072507 A A A T W W yes chr27 19072614 G T T G G G yes chr27 19072642 C C C T T T yes chr27 19072711 G T T G G G yes chr27 19072718 33005265 T T T C C C yes chr27 19072757 33005211 C T T C C C yes chr27 19072862 match pools, cons, K562, Embryonic stemcells yes 33005103 T T T G G G yes chr27 19072989 G G G A A A yes chr27 19073247 33004921 T T T C Y Y yes chr27 19073473 A G G A R R yes chr27 19073510 T T T C Y Y yes chr27 19073840 33004286 A C C A A A yes chr27 19073841 33004285 T C C T T T yes chr27 19073887 33004235 T C C T T T yes chr27 19074092 33004025 G A A G G G yes chr27 19074518 33003601 G T T G G G yes chr27 19075165 33002832 C T T C C C yes chr27 19075250 33002760 G A A G G G yes chr27 19075576 33002126 G T T G G G yes chr27 19075785 33001928 T A A T T T yes chr27 19075893 C C C G G G yes chr27 19076248 33001049 C C C T T T yes chr27 19076249 33001048 A T T A A A yes chr27 19076256 33001041 C T T C C C yes chr27 19076334 T T T C Y Y yes chr27 19076415 33000900 T C C T T T yes chr27 19076781 33000524 G T T G G G yes chr27 19076954 33000330 T T T C C C yes chr27 19077267 33000013 G G G C C C yes chr27 19077275 33000005 G A A G G G yes chr27 19077374 32999897 C T T C C C yes chr27 19078052 G A A G G G yes chr27 19078131 C T T C C C yes chr27 19078139 C T T C C C yes chr27 19079817 32997951 T G G T K K yes chr27 19080060 G G G A R R yes chr27 19081943 C C C A M M yes chr27 19082866 32994418 T T T G G G yes chr27 19086095 T T T G G G yes chr27 19086631 cons region and base dog-human yes 32993070 T T T G G G yes chr27 19086778 match pools, cons, K562, Embryonic stemcells yes 32992923 C C C T T T yes chr27 19087476 32991528 C C C T T T yes chr27 19087497 32991507 A A A G G G yes chr27 19087511 32991493 C C C A A A yes chr27 19088686 32989676 G G G A R R yes chr27 19089051 32989323 A G G A A A yes chr27 19089380 32988975 A A A G G G yes chr27 19089551 T T T G G G yes chr27 19089607 A A A G G G yes chr27 19089961 32988434 T T T C C C yes chr27 19090836 32987224 G G G A R R yes chr27 19090841 32987219 C C C G S S yes chr27 19092671 T T T C C C yes chr27 19092917 T T T C C C yes chr27 19093103 G G G C S S yes chr27 19093355 match pools, cons dog-human yes 32984845 C C C T Y Y yes chr27 19093585 match pools, low cons yes 32984603 A A A G R R yes chr27 19093812 T T T C C C yes chr27 19093824 A A A G G G yes chr27 19094167 A A A C M M yes chr27 19094520 G G G A A A yes chr27 19094866 A A A G G G yes chr27 19095700 32983015 T T T C C C yes chr27 19095863 32982540 C C C T T T yes chr27 19095877 32982525 A A A G G G yes chr27 19095901 32982500 C C C T Y Y yes chr27 19095978 not cons around but SNP cons dog-human yes 32981800 A A A G R R yes chr27 19096053 T T T A W W yes chr27 19096199 match pools, opposite fr cons, gap in m/r low K562 yes 32981609 T T T G K K yes chr27 19097058 match pools, not cons, low ESC yes 32980719 T T T C C C yes chr27 19097147 cons dog-human but m/r = case� yes 32980614 A A A G G G yes chr27 19097445 0,0729 32980324 A A A G R R yes chr27 19098565 32978934 A A A G R R yes chr27 19099360 32977520 A A A G R R yes chr27 19099698 32977387 C C C T Y Y yes chr27 19099734 match pools, opposite fr cons, gap in m/r low K562 yes 32977354 G G G A R R yes chr27 19100895 32975630 C C C T Y Y yes chr27 19101169 T T T A W W yes chr27 19101299 A A A G R R yes chr27 19101681 A A A G R R yes chr27 19101711 C C C T Y Y yes chr27 19101752 G G G A R R yes chr27 19102350 32974546 C C C T Y Y yes chr27 19102361 32974535 C C C T Y Y yes chr27 19102663 32974235 C C C T Y Y yes chr27 19102681 match pools, low cons, K562 yes 32974217 T T T A W W yes chr27 19102841 match pools, low HNEK, LTR-repeat yes 32974086 G G G C S S yes chr27 19103346 32973547 G G G A R R yes chr27 19103635 C C C A M M yes chr27 19104423 32972616 C C C T Y Y yes chr27 19104717 32972415 G G G A R R yes chr27 19105411 A A A G R R yes chr27 19105907 C C C T Y Y yes chr27 19106099 32968336 T T T C Y Y yes chr27 19107516 match pools, not mapped in human yes T T T C Y Y yes chr27 19108039 A A A G R R yes chr27 19108790 match pools, not mapped in human yes T T T C C C yes chr27 19109360 32955925 G G G A R R yes chr27 19109835 T T T G K K yes chr27 19112076 C G G C C C yes chr27 19112099 63969321 C C C G S S yes chr27 19112169 cons dog-human yes 63969426 A A A G R R yes chr27 19112352 C C C G S S yes chr27 19113531 no seq in other species yes A A A G R R yes chr27 19114170 highly cons region and base!! yes 32954034 C C C G S S yes chr27 19114674 T T T G G G yes chr27 19115580 G G G A A A yes chr27 19116149 T C C T T T yes chr27 19117083 32948939 T C C T T T yes chr27 19117678 32947872 A A A G G G yes chr27 19118236 0,0729 32947321 C C C T Y Y yes chr27 19118521 T T T C Y Y yes chr27 19119028 A A A G R R yes chr27 19119166 32946371 G G G A R R yes chr27 19119963 in very conc region yes 32945293 C C C T Y Y yes chr27 19120627 A A A G R R yes chr27 19121029 32944157 G G G A R R yes chr27 19121159 cons h-d-m-r yes 32944040 G G G A R R yes chr27 19121205 end of block 11, cons yes 0,000044 32943998 T T T A A A yes chr27 19121767 32943683 A A A G G G yes chr27 19122037 32943401 T T T G G G yes chr27 19122087 32943348 A A A G G G yes chr27 19122222 32943214 T T T A A A yes chr27 19122404 32943032 G G G C C C yes chr27 19122579 32942807 G G G A A A yes chr27 19122692 32942688 C G G C C C yes chr27 19122817 32942564 T T T C Y Y yes chr27 19123268 A A A G G G yes chr27 19124099 A A A T W W yes chr27 19124103 T T T A W W yes chr27 19124996 lightly cons region, case=ref, not human yes 32940038 A T T A A A yes chr27 19126533 match pools, LTR-repeat yes 32938557 C C C T Y Y yes chr27 19126638 cons dog-human yes 32938444 T T T A W W yes chr27 19127061 32937716 T T T C Y Y yes chr27 19127315 32936268 A A A G R R yes chr27 19127748 highly cons region but not base.. yes 32934717 A A A G R R yes chr27 19128370 32934177 A A A G R R yes chr27 19128376 T T T C Y Y yes chr27 19128442 G G G A R R yes chr27 19128578 match pools, not mapped in human yes A A A T W W yes chr27 19130125 cons dog-human yes 32932211 A A A C M M yes chr27 19130510 32932012 A A A T T T yes chr27 19130654 46113732 A A A G R R yes chr27 19131113 match pools, low cons yes 32931819 C C C G S S yes chr27 19131298 A A A G R R yes chr27 19131614 match pools, not mapped in human yes T T T A W W yes chr27 19131849 T T T A W W yes chr27 19131855 G G G C S S yes chr27 19132336 G G G A R R yes chr27 19132339 not in other species� yes G G G A R R yes chr27 19133220 A A A C M M yes chr27 19133235 A A A G R R yes chr27 19135677 not in other species� yes G G G A R R yes chr27 19135824 G G G T K K yes chr27 19138377 C C C T Y Y yes chr27 19138783 32928593 C C C T Y Y yes chr27 19139179 T T T A W W yes chr27 19140837 Top GWAS SNP, match pools!!! yes 0,000031 32926185 T T T G G G yes chr27 19140960 yes 32926051 G G G A R R yes chr27 19142696 32923443 T T T A A A yes chr27 19142893 0,000032 32923253 T T T G G G yes