tcons_id:R status SF_id tcons_id regular_expression position-specific-weight-matrix TCONS_00005133:R1 R1 AT1G60650 TCONS_00005133 regular_expression: AGGT "letter-probability matrix: alength= 4 w= 4 nsites= 281 E= 1.1e-057 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- " TCONS_00005133:R3 R3 AT1G60650 TCONS_00005133 regular_expression: [TG]CTTCT[CTG] "letter-probability matrix: alength= 4 w= 7 nsites= 41 E= 4.7e-005 0.000000 0.121951 0.317073 0.560976 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.365854 0.292683 0.341463 -------------------------------------------------------------------------------- " TCONS_00005133:R4 R4 AT1G60650 TCONS_00005133 regular_expression: [TA][TA]TGCAG "letter-probability matrix: alength= 4 w= 7 nsites= 68 E= 9.3e-022 0.220588 0.000000 0.191176 0.588235 0.250000 0.176471 0.132353 0.441176 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00009111:R1 R1 AT1G20880 TCONS_00009111 regular_expression: TT[GT]CAG[GA] "letter-probability matrix: alength= 4 w= 7 nsites= 610 E= 5.4e-215 0.177049 0.145902 0.088525 0.588525 0.000000 0.000000 0.090164 0.909836 0.000000 0.000000 0.667213 0.332787 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.321311 0.167213 0.511475 0.000000 -------------------------------------------------------------------------------- " TCONS_00009111:R2 R2 AT1G20880 TCONS_00009111 regular_expression: [TC]TCT[TC]CT "letter-probability matrix: alength= 4 w= 7 nsites= 145 E= 3.7e-039 0.000000 0.317241 0.000000 0.682759 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.255172 0.000000 0.744828 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- " TCONS_00009111:R3 R3 AT1G20880 TCONS_00009111 regular_expression: [TC][TC]TC[TC][TC]C "letter-probability matrix: alength= 4 w= 7 nsites= 234 E= 2.3e-042 0.000000 0.431624 0.000000 0.568376 0.000000 0.401709 0.000000 0.598291 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.324786 0.000000 0.675214 0.000000 0.273504 0.000000 0.726496 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00009111:R4 R4 AT1G20880 TCONS_00009111 regular_expression: [TA][TA]TGCAG "letter-probability matrix: alength= 4 w= 7 nsites= 367 E= 1.3e-111 0.215259 0.111717 0.171662 0.501362 0.226158 0.117166 0.095368 0.561308 0.000000 0.000000 0.073569 0.926431 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00010616:R1 R1 TCONS_00010616 TCONS_00010616 regular_expression: AGGT "letter-probability matrix: alength= 4 w= 4 nsites= 478 E= 2.7e-102 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- " TCONS_00010616:R2 R2 TCONS_00010616 TCONS_00010616 regular_expression: GA[AG]G[AC][AT]G "letter-probability matrix: alength= 4 w= 7 nsites= 94 E= 5.3e-005 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.627660 0.000000 0.329787 0.042553 0.000000 0.000000 1.000000 0.000000 0.797872 0.202128 0.000000 0.000000 0.723404 0.000000 0.000000 0.276596 0.000000 0.170213 0.829787 0.000000 -------------------------------------------------------------------------------- " TCONS_00010616:R3 R3 TCONS_00010616 TCONS_00010616 regular_expression: [CT]TTCT[TC]C "letter-probability matrix: alength= 4 w= 7 nsites= 62 E= 3.3e-016 0.000000 0.709677 0.000000 0.290323 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.822581 0.177419 0.000000 0.000000 0.080645 0.000000 0.919355 0.000000 0.290323 0.000000 0.709677 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00010616:R4 R4 TCONS_00010616 TCONS_00010616 regular_expression: [TA]TGCAG "letter-probability matrix: alength= 4 w= 6 nsites= 162 E= 4.0e-064 0.203704 0.179012 0.074074 0.543210 0.000000 0.000000 0.129630 0.870370 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00015312:R1 R1 IRE1A TCONS_00015312 regular_expression: AGGTA[AT][GT] "letter-probability matrix: alength= 4 w= 7 nsites= 91 E= 2.0e-014 0.736264 0.076923 0.000000 0.186813 0.000000 0.000000 0.912088 0.087912 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.637363 0.000000 0.197802 0.164835 0.483516 0.098901 0.000000 0.417582 0.000000 0.120879 0.648352 0.230769 -------------------------------------------------------------------------------- " TCONS_00015312:R3 R3 IRE1A TCONS_00015312 regular_expression: CTT[CG][AC][AT] "letter-probability matrix: alength= 4 w= 6 nsites= 63 E= 1.9e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.650794 0.349206 0.000000 0.539683 0.380952 0.000000 0.079365 0.682540 0.000000 0.000000 0.317460 -------------------------------------------------------------------------------- " TCONS_00015312:R4 R4 IRE1A TCONS_00015312 regular_expression: [GT]T[TG][GT]CAG "letter-probability matrix: alength= 4 w= 7 nsites= 49 E= 6.1e-010 0.000000 0.040816 0.489796 0.469388 0.000000 0.000000 0.040816 0.959184 0.000000 0.183673 0.224490 0.591837 0.000000 0.000000 0.653061 0.346939 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00016017:R1 R1 TCONS_00016017 TCONS_00016017 regular_expression: TT[GT]CAG[GAC] "letter-probability matrix: alength= 4 w= 7 nsites= 295 E= 2.5e-124 0.152542 0.169492 0.118644 0.559322 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.552542 0.447458 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.298305 0.206780 0.494915 0.000000 -------------------------------------------------------------------------------- " TCONS_00016017:R2 R2 TCONS_00016017 TCONS_00016017 regular_expression: CT[TC]CT[CT]C "letter-probability matrix: alength= 4 w= 7 nsites= 45 E= 3.8e-008 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.422222 0.000000 0.577778 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.577778 0.000000 0.422222 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00016017:R3 R3 TCONS_00016017 TCONS_00016017 regular_expression: CTTC[TC][TC] "letter-probability matrix: alength= 4 w= 6 nsites= 106 E= 3.1e-009 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.311321 0.000000 0.688679 0.000000 0.424528 0.000000 0.575472 -------------------------------------------------------------------------------- " TCONS_00016017:R4 R4 TCONS_00016017 TCONS_00016017 regular_expression: TGCAG "letter-probability matrix: alength= 4 w= 5 nsites= 144 E= 9.1e-040 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00024518:R1 R1 TCONS_00024518 TCONS_00024518 regular_expression: AGGT "letter-probability matrix: alength= 4 w= 4 nsites= 393 E= 4.1e-081 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- " TCONS_00024518:R2 R2 TCONS_00024518 TCONS_00024518 regular_expression: GAAGA[AT]G "letter-probability matrix: alength= 4 w= 7 nsites= 56 E= 1.9e-006 0.000000 0.000000 1.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.892857 0.000000 0.107143 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.696429 0.000000 0.035714 0.267857 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00024518:R3 R3 TCONS_00024518 TCONS_00024518 regular_expression: [CT][TC]TC[TC][TC][TC] "letter-probability matrix: alength= 4 w= 7 nsites= 108 E= 1.7e-005 0.000000 0.518519 0.000000 0.481481 0.000000 0.305556 0.000000 0.694444 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.314815 0.000000 0.685185 0.000000 0.472222 0.000000 0.527778 0.000000 0.425926 0.000000 0.574074 -------------------------------------------------------------------------------- " TCONS_00024518:R4 R4 TCONS_00024518 TCONS_00024518 regular_expression: [TG]GCAG "letter-probability matrix: alength= 4 w= 5 nsites= 92 E= 4.7e-012 0.000000 0.000000 0.228261 0.771739 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00037833:R1 R1 AtRBP-DR1 TCONS_00037833 regular_expression: [TA]T[GT]CAG[GA] "letter-probability matrix: alength= 4 w= 7 nsites= 470 E= 1.7e-223 0.210638 0.117021 0.102128 0.570213 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.631915 0.368085 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.374468 0.117021 0.508511 0.000000 -------------------------------------------------------------------------------- " TCONS_00037833:R2 R2 AtRBP-DR1 TCONS_00037833 regular_expression: [CT]TTC[TC]TC "letter-probability matrix: alength= 4 w= 7 nsites= 98 E= 1.7e-025 0.000000 0.683673 0.000000 0.316327 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00037833:R3 R3 AtRBP-DR1 TCONS_00037833 regular_expression: T[CT][TC]T[TC]CT "letter-probability matrix: alength= 4 w= 7 nsites= 219 E= 6.9e-046 0.000000 0.000000 0.000000 1.000000 0.000000 0.557078 0.000000 0.442922 0.000000 0.401826 0.000000 0.598174 0.000000 0.164384 0.000000 0.835616 0.000000 0.251142 0.000000 0.748858 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- " TCONS_00037833:R4 R4 AtRBP-DR1 TCONS_00037833 regular_expression: TGCAG "letter-probability matrix: alength= 4 w= 5 nsites= 279 E= 3.0e-104 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00038985:R1 R1 TCONS_00038985 TCONS_00038985 regular_expression: TT[GT]CAG[GA] "letter-probability matrix: alength= 4 w= 7 nsites= 201 E= 1.4e-062 0.089552 0.159204 0.164179 0.587065 0.000000 0.000000 0.159204 0.840796 0.000000 0.000000 0.676617 0.323383 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.368159 0.164179 0.467662 0.000000 -------------------------------------------------------------------------------- " TCONS_00038985:R2 R2 TCONS_00038985 TCONS_00038985 regular_expression: [CT]T[CT]CT[TC]C "letter-probability matrix: alength= 4 w= 7 nsites= 58 E= 9.4e-006 0.000000 0.568966 0.000000 0.431034 0.000000 0.000000 0.000000 1.000000 0.000000 0.551724 0.000000 0.448276 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.362069 0.000000 0.637931 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00038985:R3 R3 TCONS_00038985 TCONS_00038985 regular_expression: [CT]TTCT[TC]C "letter-probability matrix: alength= 4 w= 7 nsites= 54 E= 8.4e-017 0.000000 0.722222 0.000000 0.277778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.314815 0.000000 0.685185 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00038985:R4 R4 TCONS_00038985 TCONS_00038985 regular_expression: [TA]TGCAG "letter-probability matrix: alength= 4 w= 6 nsites= 116 E= 4.6e-024 0.241379 0.112069 0.086207 0.560345 0.000000 0.000000 0.172414 0.827586 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00045586:R1 R1 TCONS_00045586 TCONS_00045586 regular_expression: AGGT "letter-probability matrix: alength= 4 w= 4 nsites= 387 E= 3.5e-068 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- " TCONS_00045586:R3 R3 TCONS_00045586 TCONS_00045586 regular_expression: [TC]TC[TC]TC "letter-probability matrix: alength= 4 w= 6 nsites= 81 E= 2.0e-015 0.000000 0.345679 0.000000 0.654321 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.259259 0.000000 0.740741 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00045586:R4 R4 TCONS_00045586 TCONS_00045586 regular_expression: TGCAG "letter-probability matrix: alength= 4 w= 5 nsites= 86 E= 1.6e-019 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00046919:R1 R1 TCONS_00046919 TCONS_00046919 regular_expression: AGGT "letter-probability matrix: alength= 4 w= 4 nsites= 275 E= 9.2e-050 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- " TCONS_00046919:R3 R3 TCONS_00046919 TCONS_00046919 regular_expression: [TC][TC]TCTTC "letter-probability matrix: alength= 4 w= 7 nsites= 61 E= 1.8e-015 0.147541 0.262295 0.000000 0.590164 0.000000 0.278689 0.000000 0.721311 0.000000 0.114754 0.180328 0.704918 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00046919:R4 R4 TCONS_00046919 TCONS_00046919 regular_expression: [TG][TA]T[GA]CAG "letter-probability matrix: alength= 4 w= 7 nsites= 119 E= 2.4e-024 0.184874 0.000000 0.226891 0.588235 0.235294 0.168067 0.142857 0.453782 0.000000 0.000000 0.142857 0.857143 0.319328 0.000000 0.680672 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00051336:R1 R1 TCONS_00051336 TCONS_00051336 regular_expression: AGGT "letter-probability matrix: alength= 4 w= 4 nsites= 577 E= 4.3e-125 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- " TCONS_00051336:R2 R2 TCONS_00051336 TCONS_00051336 regular_expression: [TA]G[ACG][AT]G[AGC]A "letter-probability matrix: alength= 4 w= 7 nsites= 281 E= 6.9e-006 0.366548 0.000000 0.000000 0.633452 0.000000 0.000000 1.000000 0.000000 0.508897 0.288256 0.202847 0.000000 0.551601 0.000000 0.000000 0.448399 0.000000 0.000000 1.000000 0.000000 0.498221 0.206406 0.295374 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00051336:R3 R3 TCONS_00051336 TCONS_00051336 regular_expression: CTTCT[TC][CT] "letter-probability matrix: alength= 4 w= 7 nsites= 83 E= 2.3e-019 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.084337 0.000000 0.915663 0.000000 1.000000 0.000000 0.000000 0.132530 0.144578 0.000000 0.722892 0.000000 0.433735 0.000000 0.566265 0.000000 0.783133 0.000000 0.216867 -------------------------------------------------------------------------------- " TCONS_00051336:R4 R4 TCONS_00051336 TCONS_00051336 regular_expression: [TA]TT[GT]CAG "letter-probability matrix: alength= 4 w= 7 nsites= 376 E= 8.5e-070 0.207447 0.111702 0.151596 0.529255 0.143617 0.178191 0.125000 0.553191 0.000000 0.000000 0.087766 0.912234 0.191489 0.000000 0.492021 0.316489 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00052509:R1 R1 AT5G55550 TCONS_00052509 regular_expression: AGGT "letter-probability matrix: alength= 4 w= 4 nsites= 250 E= 5.9e-027 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- " TCONS_00052509:R2 R2 AT5G55550 TCONS_00052509 regular_expression: TCTT[GT][GC][TA] "letter-probability matrix: alength= 4 w= 7 nsites= 61 E= 4.2e-004 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.524590 0.475410 0.000000 0.475410 0.524590 0.000000 0.442623 0.000000 0.000000 0.557377 -------------------------------------------------------------------------------- " TCONS_00052509:R3 R3 AT5G55550 TCONS_00052509 regular_expression: [CT][TC]TC[TA][TC]C "letter-probability matrix: alength= 4 w= 7 nsites= 79 E= 1.9e-021 0.000000 0.556962 0.000000 0.443038 0.000000 0.405063 0.000000 0.594937 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.278481 0.000000 0.000000 0.721519 0.000000 0.265823 0.000000 0.734177 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00052509:R4 R4 AT5G55550 TCONS_00052509 regular_expression: TTGCAG "letter-probability matrix: alength= 4 w= 6 nsites= 85 E= 2.3e-023 0.176471 0.129412 0.105882 0.588235 0.000000 0.000000 0.141176 0.858824 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00053285:R1 R1 ATSC35 TCONS_00053285 regular_expression: AGGT "letter-probability matrix: alength= 4 w= 4 nsites= 184 E= 8.7e-036 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- " TCONS_00053285:R2 R2 ATSC35 TCONS_00053285 regular_expression: [AT]GCTGG "letter-probability matrix: alength= 4 w= 6 nsites= 29 E= 8.0e-003 0.586207 0.000000 0.000000 0.413793 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00053285:R3 R3 ATSC35 TCONS_00053285 regular_expression: CT[CT][CT][AT]TC "letter-probability matrix: alength= 4 w= 7 nsites= 33 E= 1.1e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.545455 0.000000 0.454545 0.000000 0.666667 0.000000 0.333333 0.484848 0.000000 0.151515 0.363636 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- " TCONS_00053285:R4 R4 ATSC35 TCONS_00053285 regular_expression: TGCAG "letter-probability matrix: alength= 4 w= 5 nsites= 50 E= 4.4e-014 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- "