# column 1 - orthologous human coordinates (hg19) mapping to expressed chimp TEs # columns 2-7 are panTro4 #human coordinates chr start end repName repClass strand chr10:101466755-101466822 chr10 101466755 101466822 MIR SINE - chr10:101468147-101468302 chr10 101468147 101468302 MIRc SINE + chr10:101471326-101471449 chr10 101471326 101471449 MER5B DNA - chr10:102138787-102138890 chr10 102138787 102138890 MIRc SINE + chr10:102140676-102141062 chr10 102140676 102141062 LTR7B LTR + chr10:103529898-103529930 chr10 103529898 103529930 (A)n Simple_repeat + chr10:103866298-103866341 chr10 103866298 103866341 (A)n Simple_repeat + chr10:104211611-104211732 chr10 104211611 104211732 MIRb SINE - chr10:104213037-104213163 chr10 104213037 104213163 PrimLTR79 LTR - chr10:104214071-104215209 chr10 104214071 104215209 AluJb SINE - chr10:104215209-104215333 chr10 104215209 104215333 AluJo SINE - chr10:104215366-104215458 chr10 104215366 104215458 L1MA1 LINE + chr10:104215613-104216096 chr10 104215613 104216096 MLT1D LTR + chr10:106028170-106028262 chr10 106028170 106028262 MIRc SINE - chr10:106028399-106028540 chr10 106028399 106028540 MER5A1 DNA - chr10:106109019-106109053 chr10 106109019 106109053 (CAAAA)n Simple_repeat + chr10:114586660-114586686 chr10 114586660 114586686 (GAAT)n Simple_repeat + chr10:119039268-119039404 chr10 119039268 119039404 Charlie4z DNA + chr10:120436662-120436699 chr10 120436662 120436699 A-rich Low_complexity + chr10:120439736-120439760 chr10 120439736 120439760 (CA)n Simple_repeat + chr10:120440232-120440267 chr10 120440232 120440267 (ATATGA)n Simple_repeat + chr10:12166958-12166975 chr10 12166958 12166975 (A)n Simple_repeat + chr10:124926523-124926625 chr10 124926523 124926625 MER103C DNA - chr10:126436613-126436664 chr10 126436613 126436664 (TACA)n Simple_repeat + chr10:126440021-126440173 chr10 126440021 126440173 FLAM_C SINE + chr10:126442237-126442351 chr10 126442237 126442351 MER8 DNA + chr10:126445735-126445770 chr10 126445735 126445770 (CA)n Simple_repeat + chr10:126445953-126445985 chr10 126445953 126445985 (CA)n Simple_repeat + chr10:126603950-126603982 chr10 126603950 126603982 (TA)n Simple_repeat + chr10:126605794-126605828 chr10 126605794 126605828 GA-rich Low_complexity + chr10:126609112-126609201 chr10 126609112 126609201 L2a LINE + chr10:126609434-126609489 chr10 126609434 126609489 MER94B DNA - chr10:126610813-126610905 chr10 126610813 126610905 (TA)n Simple_repeat + chr10:126611428-126611526 chr10 126611428 126611526 AluJr SINE + chr10:126611576-126611872 chr10 126611576 126611872 AluSg SINE + chr10:126611881-126612136 chr10 126611881 126612136 AluSx3 SINE + chr10:126617811-126617896 chr10 126617811 126617896 MIRb SINE + chr10:126622144-126622247 chr10 126622144 126622247 L2c LINE + chr10:126622731-126622782 chr10 126622731 126622782 MamSINE1 SINE + chr10:126624559-126624623 chr10 126624559 126624623 L2d LINE - chr10:126624715-126624756 chr10 126624715 126624756 (GT)n Simple_repeat + chr10:126626351-126626427 chr10 126626351 126626427 Charlie23a DNA - chr10:126629262-126629571 chr10 126629262 126629571 AluSg SINE + chr10:126629572-126629600 chr10 126629572 126629600 (AACA)n Simple_repeat + chr10:126629942-126630218 chr10 126629942 126630218 AluSg7 SINE - chr10:128592931-128593070 chr10 128592931 128593070 Charlie18a DNA + chr10:131908539-131908588 chr10 131908539 131908588 L2b LINE + chr10:15117400-15118091 chr10 15117400 15118091 L1MD1 LINE - chr10:15117690-15118001 chr10 15117690 15118001 AluSx SINE + chr10:15118502-15118801 chr10 15118502 15118801 AluSx SINE - chr10:17631246-17631289 chr10 17631246 17631289 (ATC)n Simple_repeat + chr10:21473528-21473545 chr10 21473528 21473545 (CTG)n Simple_repeat + chr10:21475186-21475229 chr10 21475186 21475229 (AC)n Simple_repeat + chr10:21475917-21475958 chr10 21475917 21475958 (TG)n Simple_repeat + chr10:21476049-21476081 chr10 21476049 21476081 (ATAC)n Simple_repeat + chr10:21481074-21481097 chr10 21481074 21481097 (TTCA)n Simple_repeat + chr10:21501966-21502038 chr10 21501966 21502038 MIR SINE - chr10:21522937-21522978 chr10 21522937 21522978 (AGAT)n Simple_repeat + chr10:21529824-21529875 chr10 21529824 21529875 (AC)n Simple_repeat + chr10:21530174-21530217 chr10 21530174 21530217 (AAAT)n Simple_repeat + chr10:21533595-21533656 chr10 21533595 21533656 A-rich Low_complexity + chr10:21538652-21538690 chr10 21538652 21538690 (AAAT)n Simple_repeat + chr10:21541313-21541342 chr10 21541313 21541342 (TTGA)n Simple_repeat + chr10:21561047-21561075 chr10 21561047 21561075 (T)n Simple_repeat + chr10:21561515-21561537 chr10 21561515 21561537 (AAAT)n Simple_repeat + chr10:21570391-21570426 chr10 21570391 21570426 (CTTT)n Simple_repeat + chr10:21571444-21571473 chr10 21571444 21571473 GA-rich Low_complexity + chr10:21819275-21819350 chr10 21819275 21819350 L2d2 LINE - chr10:21820630-21820665 chr10 21820630 21820665 (TA)n Simple_repeat + chr10:21820692-21820769 chr10 21820692 21820769 L2a LINE + chr10:21820786-21820826 chr10 21820786 21820826 (CTGCTTTT)n Simple_repeat + chr10:21822939-21823016 chr10 21822939 21823016 (CCCGCG)n Simple_repeat + chr10:27399189-27399288 chr10 27399189 27399288 L1MC4 LINE + chr10:28804535-28814877 chr10 28804535 28814877 L1MB5 LINE - chr10:28810052-28810349 chr10 28810052 28810349 AluSp SINE - chr10:28811050-28811349 chr10 28811050 28811349 AluSx SINE + chr10:28811377-28811444 chr10 28811377 28811444 Charlie4z DNA + chr10:28811914-28812209 chr10 28811914 28812209 AluSp SINE - chr10:28812502-28812687 chr10 28812502 28812687 AluSc SINE - chr10:28814453-28814712 chr10 28814453 28814712 AluSx1 SINE - chr10:28815167-28815367 chr10 28815167 28815367 MER20B DNA - chr10:28816779-28816993 chr10 28816779 28816993 MIR SINE - chr10:28819786-28819945 chr10 28819786 28819945 AluJr SINE - chr10:35930980-35931007 chr10 35930980 35931007 (CGTC)n Simple_repeat + chr10:38697929-38698012 chr10 38697929 38698012 MIR1_Amn SINE + chr10:46343916-46344107 chr10 46343916 46344107 MIR SINE - chr10:46344921-46344948 chr10 46344921 46344948 (ATT)n Simple_repeat + chr10:46344978-46345087 chr10 46344978 46345087 L1M4 LINE - chr10:46350233-46350438 chr10 46350233 46350438 L2 LINE + chr10:46350720-46350976 chr10 46350720 46350976 AluJb SINE + chr10:46350997-46351361 chr10 46350997 46351361 MER57E1 LTR + chr10:46351361-46351493 chr10 46351361 46351493 L1MC1 LINE + chr10:46351908-46351949 chr10 46351908 46351949 (AC)n Simple_repeat + chr10:46352577-46352616 chr10 46352577 46352616 (AC)n Simple_repeat + chr10:46353758-46353968 chr10 46353758 46353968 L1M3 LINE - chr10:46354361-46354633 chr10 46354361 46354633 AluSx SINE - chr10:46355196-46355538 chr10 46355196 46355538 MLT1A0 LTR + chr10:46356066-46356198 chr10 46356066 46356198 FLAM_A SINE + chr10:46357474-46357775 chr10 46357474 46357775 AluSc SINE + chr10:46357890-46358181 chr10 46357890 46358181 AluJr SINE - chr10:46373077-46373110 chr10 46373077 46373110 (TG)n Simple_repeat + chr10:46391751-46391797 chr10 46391751 46391797 (AC)n Simple_repeat + chr10:46398495-46398595 chr10 46398495 46398595 GA-rich Low_complexity + chr10:46398556-46398601 chr10 46398556 46398601 (AGAC)n Simple_repeat + chr10:46418841-46418912 chr10 46418841 46418912 L1ME3G LINE - chr10:46420470-46420684 chr10 46420470 46420684 AluJr SINE - chr10:46712812-46713007 chr10 46712812 46713007 AluJr SINE - chr10:46734194-46734385 chr10 46734194 46734385 MIR SINE - chr10:46735180-46735222 chr10 46735180 46735222 (ATT)n Simple_repeat + chr10:46735250-46735361 chr10 46735250 46735361 L1M4 LINE - chr10:46739952-46740872 chr10 46739952 46740872 L2 LINE + chr10:46740985-46741247 chr10 46740985 46741247 AluJb SINE + chr10:46741268-46741632 chr10 46741268 46741632 MER57E1 LTR + chr10:46741632-46741764 chr10 46741632 46741764 L1MC1 LINE + chr10:46742028-46742143 chr10 46742028 46742143 5S rRNA + chr10:46742181-46742210 chr10 46742181 46742210 (AC)n Simple_repeat + chr10:46742836-46742887 chr10 46742836 46742887 (AC)n Simple_repeat + chr10:46744066-46744273 chr10 46744066 46744273 L1M3 LINE - chr10:46744656-46744934 chr10 46744656 46744934 AluSx SINE - chr10:46745374-46746211 chr10 46745374 46746211 MLT1D LTR + chr10:46745493-46745835 chr10 46745493 46745835 MLT1A0 LTR + chr10:46746220-46746254 chr10 46746220 46746254 (AC)n Simple_repeat + chr10:46746342-46746474 chr10 46746342 46746474 FLAM_A SINE + chr10:46747750-46748041 chr10 46747750 46748041 AluSc SINE + chr10:46748161-46748453 chr10 46748161 46748453 AluJr SINE - chr10:46914020-46914111 chr10 46914020 46914111 (GCC)n Simple_repeat + chr10:46915114-46915144 chr10 46915114 46915144 (A)n Simple_repeat + chr10:46993214-46993264 chr10 46993214 46993264 (CCAGCGC)n Simple_repeat + chr10:46993295-46993347 chr10 46993295 46993347 (CCTCT)n Simple_repeat + chr10:46993371-46993439 chr10 46993371 46993439 (CCCTCTC)n Simple_repeat + chr10:47190063-47190195 chr10 47190063 47190195 FLAM_A SINE - chr10:47241159-47241377 chr10 47241159 47241377 MIR SINE + chr10:47241382-47241422 chr10 47241382 47241422 (TATTTTA)n Simple_repeat + chr10:47242513-47242674 chr10 47242513 47242674 Charlie23a DNA - chr10:47243017-47243106 chr10 47243017 47243106 MIR3 SINE + chr10:47396092-47396183 chr10 47396092 47396183 (GCC)n Simple_repeat + chr10:47997484-47997528 chr10 47997484 47997528 (AC)n Simple_repeat + chr10:47998138-47998255 chr10 47998138 47998255 MLT1I LTR + chr10:48000801-48000833 chr10 48000801 48000833 (TGAG)n Simple_repeat + chr10:48186243-48186332 chr10 48186243 48186332 MIR3 SINE - chr10:48239156-48239288 chr10 48239156 48239288 FLAM_A SINE + chr10:48930251-48930462 chr10 48930251 48930462 L2 LINE + chr10:48930747-48931009 chr10 48930747 48931009 AluJb SINE + chr10:48931030-48931393 chr10 48931030 48931393 MER57E1 LTR + chr10:48931393-48931525 chr10 48931393 48931525 L1MC1 LINE + chr10:48931789-48931904 chr10 48931789 48931904 5S rRNA + chr10:48931942-48931973 chr10 48931942 48931973 (AC)n Simple_repeat + chr10:48932598-48932651 chr10 48932598 48932651 (AC)n Simple_repeat + chr10:48933830-48934036 chr10 48933830 48934036 L1M3 LINE - chr10:48934417-48934695 chr10 48934417 48934695 AluSx SINE - chr10:48935135-48935972 chr10 48935135 48935972 MLT1D LTR + chr10:48935254-48935596 chr10 48935254 48935596 MLT1A0 LTR + chr10:48935989-48936023 chr10 48935989 48936023 (AC)n Simple_repeat + chr10:48936111-48936243 chr10 48936111 48936243 FLAM_A SINE + chr10:48937519-48937810 chr10 48937519 48937810 AluSc SINE + chr10:48937930-48938222 chr10 48937930 48938222 AluJr SINE - chr10:48940077-48940408 chr10 48940077 48940408 AluJo SINE + chr10:48940361-48940387 chr10 48940361 48940387 (AAAACA)n Simple_repeat + chr10:48942973-48943115 chr10 48942973 48943115 L2d2 LINE - chr10:48944691-48944890 chr10 48944691 48944890 MER58A DNA + chr10:48945838-48945932 chr10 48945838 48945932 L1M7 LINE + chr10:48946250-48946399 chr10 48946250 48946399 L1ME4b LINE + chr10:48946612-48946930 chr10 48946612 48946930 L1MA4 LINE + chr10:48947613-48947637 chr10 48947613 48947637 (T)n Simple_repeat + chr10:48947853-48947971 chr10 48947853 48947971 MIRb SINE + chr10:48948129-48948174 chr10 48948129 48948174 (TAT)n Simple_repeat + chr10:48950189-48950407 chr10 48950189 48950407 MIR SINE + chr10:48950412-48950452 chr10 48950412 48950452 (TATTTTA)n Simple_repeat + chr10:48951543-48951704 chr10 48951543 48951704 Charlie23a DNA - chr10:48952045-48952134 chr10 48952045 48952134 MIR3 SINE + chr10:49216197-49216329 chr10 49216197 49216329 FLAM_A SINE - chr10:49230732-49230743 chr10 49230732 49230743 L1PB LINE + chr10:49264951-49265080 chr10 49264951 49265080 MIRb SINE + chr10:49265238-49265283 chr10 49265238 49265283 (TAT)n Simple_repeat + chr10:51624293-51625505 chr10 51624293 51625505 L2b LINE - chr10:51624569-51624861 chr10 51624569 51624861 AluSq2 SINE + chr10:51624861-51624889 chr10 51624861 51624889 (AAACA)n Simple_repeat + chr10:51625578-51625850 chr10 51625578 51625850 L2b LINE - chr10:51625851-51626027 chr10 51625851 51626027 MER112 DNA - chr10:51626672-51626792 chr10 51626672 51626792 FLAM_A SINE + chr10:51627096-51627236 chr10 51627096 51627236 MIRb SINE - chr10:51627978-51628018 chr10 51627978 51628018 A-rich Low_complexity + chr10:51628721-51628867 chr10 51628721 51628867 L2 LINE + chr10:51629009-51629069 chr10 51629009 51629069 MER5B DNA - chr10:51629539-51629779 chr10 51629539 51629779 MIR SINE - chr10:51629855-51629934 chr10 51629855 51629934 L2d2 LINE + chr10:51633414-51633442 chr10 51633414 51633442 (T)n Simple_repeat + chr10:51656131-51656158 chr10 51656131 51656158 (TTTTG)n Simple_repeat + chr10:51657131-51657168 chr10 51657131 51657168 (TGTTT)n Simple_repeat + chr10:51658637-51658772 chr10 51658637 51658772 AluSz SINE + chr10:51659466-51659530 chr10 51659466 51659530 GA-rich Low_complexity + chr10:51670590-51670804 chr10 51670590 51670804 AluJr SINE + chr10:51692672-51692778 chr10 51692672 51692778 (TC)n Simple_repeat + chr10:51699476-51699522 chr10 51699476 51699522 (GT)n Simple_repeat + chr10:51718163-51718196 chr10 51718163 51718196 (AC)n Simple_repeat + chr10:52518019-52518224 chr10 52518019 52518224 MLT1I LTR - chr10:52518438-52518750 chr10 52518438 52518750 L2b LINE - chr10:52518755-52518790 chr10 52518755 52518790 (TGTGTT)n Simple_repeat + chr10:55217947-55218035 chr10 55217947 55218035 5S rRNA + chr10:5806348-5806409 chr10 5806348 5806409 L2c LINE + chr10:5806532-5806673 chr10 5806532 5806673 MER20 DNA + chr10:58116362-58116408 chr10 58116362 58116408 A-rich Low_complexity + chr10:58870988-58871033 chr10 58870988 58871033 (AT)n Simple_repeat + chr10:58877993-58878026 chr10 58877993 58878026 (GAAT)n Simple_repeat + chr10:58887349-58887385 chr10 58887349 58887385 (TTTC)n Simple_repeat + chr10:58887385-58887570 chr10 58887385 58887570 (TCTCTC)n Simple_repeat + chr10:58888740-58888809 chr10 58888740 58888809 MIR SINE + chr10:58890855-58890884 chr10 58890855 58890884 (AC)n Simple_repeat + chr10:58891567-58891695 chr10 58891567 58891695 FRAM SINE + chr10:58891615-58891642 chr10 58891615 58891642 (GTGATC)n Simple_repeat + chr10:58892173-58892200 chr10 58892173 58892200 (CA)n Simple_repeat + chr10:58901754-58901787 chr10 58901754 58901787 (AATAAT)n Simple_repeat + chr10:58902492-58902537 chr10 58902492 58902537 (AC)n Simple_repeat + chr10:58902833-58902873 chr10 58902833 58902873 (GT)n Simple_repeat + chr10:58917155-58917191 chr10 58917155 58917191 (AC)n Simple_repeat + chr10:58918955-58919020 chr10 58918955 58919020 (CA)n Simple_repeat + chr10:58931006-58931022 chr10 58931006 58931022 A-rich Low_complexity + chr10:58931216-58931243 chr10 58931216 58931243 A-rich Low_complexity + chr10:58932493-58932520 chr10 58932493 58932520 A-rich Low_complexity + chr10:58944321-58944464 chr10 58944321 58944464 L1MB1 LINE - chr10:58944398-58944431 chr10 58944398 58944431 (TG)n Simple_repeat + chr10:58952887-58952955 chr10 58952887 58952955 MLT2F LTR + chr10:58953783-58953859 chr10 58953783 58953859 (AT)n Simple_repeat + chr10:58955294-58955418 chr10 58955294 58955418 L2a LINE - chr10:58957447-58957467 chr10 58957447 58957467 (CA)n Simple_repeat + chr10:58957477-58957501 chr10 58957477 58957501 (AG)n Simple_repeat + chr10:58959168-58959216 chr10 58959168 58959216 (TTTAA)n Simple_repeat + chr10:58959392-58959428 chr10 58959392 58959428 (CA)n Simple_repeat + chr10:58960329-58960378 chr10 58960329 58960378 (TTTA)n Simple_repeat + chr10:58960339-58960371 chr10 58960339 58960371 (TTGTTT)n Simple_repeat + chr10:58961507-58961577 chr10 58961507 58961577 (TTC)n Simple_repeat + chr10:58965864-58965898 chr10 58965864 58965898 (ATTT)n Simple_repeat + chr10:58967438-58967559 chr10 58967438 58967559 MLT1J LTR + chr10:58967653-58967824 chr10 58967653 58967824 L1ME3G LINE - chr10:58969668-58969705 chr10 58969668 58969705 A-rich Low_complexity + chr10:58969758-58969787 chr10 58969758 58969787 (TGTGTA)n Simple_repeat + chr10:58970403-58970447 chr10 58970403 58970447 (AC)n Simple_repeat + chr10:58970648-58971352 chr10 58970648 58971352 THE1D-int LTR - chr10:58970983-58971063 chr10 58970983 58971063 THE1D-int LTR + chr10:58973547-58973572 chr10 58973547 58973572 (CA)n Simple_repeat + chr10:58973634-58973665 chr10 58973634 58973665 (TGT)n Simple_repeat + chr10:58974542-58974708 chr10 58974542 58974708 MIR SINE - chr10:58981362-58981402 chr10 58981362 58981402 (TA)n Simple_repeat + chr10:60050159-60050247 chr10 60050159 60050247 Charlie18a DNA + chr10:60159802-60159899 chr10 60159802 60159899 HAL1ME LINE + chr10:60160024-60160150 chr10 60160024 60160150 FLAM_A SINE + chr10:62555234-62555273 chr10 62555234 62555273 (TATT)n Simple_repeat + chr10:62556608-62556720 chr10 62556608 62556720 AluJo SINE + chr10:62556825-62556997 chr10 62556825 62556997 MER5A DNA - chr10:62557164-62557271 chr10 62557164 62557271 MIRb SINE + chr10:62558729-62558853 chr10 62558729 62558853 AluJo SINE + chr10:6446932-6446943 chr10 6446932 6446943 (TTCT)n Simple_repeat + chr10:6451556-6451568 chr10 6451556 6451568 (TCTATT)n Simple_repeat + chr10:65229005-65229076 chr10 65229005 65229076 MIRb SINE - chr10:65229069-65229182 chr10 65229069 65229182 MIRc SINE - chr10:65229285-65229383 chr10 65229285 65229383 L2c LINE - chr10:65245096-65245133 chr10 65245096 65245133 Tigger19a DNA + chr10:65245193-65245221 chr10 65245193 65245221 (AGAAA)n Simple_repeat + chr10:65246688-65246775 chr10 65246688 65246775 MIRc SINE - chr10:65252803-65252829 chr10 65252803 65252829 (TTTC)n Simple_repeat + chr10:65253378-65253421 chr10 65253378 65253421 AluSx SINE - chr10:65254540-65254591 chr10 65254540 65254591 MIRb SINE - chr10:65254798-65254857 chr10 65254798 65254857 L2d LINE + chr10:65265353-65265429 chr10 65265353 65265429 MER5A DNA - chr10:65279994-65280087 chr10 65279994 65280087 MIR1_Amn SINE - chr10:6623078-6623165 chr10 6623078 6623165 Mam_R4 LINE + chr10:6623899-6623944 chr10 6623899 6623944 L2c LINE + chr10:70458089-70458186 chr10 70458089 70458186 MIRb SINE - chr10:70459034-70459060 chr10 70459034 70459060 (TTTGC)n Simple_repeat + chr10:70459253-70459275 chr10 70459253 70459275 (CA)n Simple_repeat + chr10:75387784-75387830 chr10 75387784 75387830 MamRep605b LTR? + chr10:75431530-75431572 chr10 75431530 75431572 (TCTCCT)n Simple_repeat + chr10:75458648-75458814 chr10 75458648 75458814 MIR SINE - chr10:75466409-75466455 chr10 75466409 75466455 (AC)n Simple_repeat + chr10:75467082-75467129 chr10 75467082 75467129 (AC)n Simple_repeat + chr10:75469546-75469568 chr10 75469546 75469568 (TA)n Simple_repeat + chr10:75470458-75470474 chr10 75470458 75470474 (AT)n Simple_repeat + chr10:75470474-75470533 chr10 75470474 75470533 (AC)n Simple_repeat + chr10:75470533-75470546 chr10 75470533 75470546 (AT)n Simple_repeat + chr10:75480687-75480791 chr10 75480687 75480791 L2c LINE - chr10:75483623-75483775 chr10 75483623 75483775 L1ME4b LINE + chr10:75485530-75485572 chr10 75485530 75485572 (TAT)n Simple_repeat + chr10:75502567-75503375 chr10 75502567 75503375 L2a LINE + chr10:75502617-75503340 chr10 75502617 75503340 LTR8 LTR - chr10:75503561-75503604 chr10 75503561 75503604 MIR SINE - chr10:75537314-75537610 chr10 75537314 75537610 AluSq SINE - chr10:75537621-75537920 chr10 75537621 75537920 AluSz6 SINE - chr10:75538358-75538403 chr10 75538358 75538403 (TATCTA)n Simple_repeat + chr10:75538614-75538814 chr10 75538614 75538814 AluJr SINE + chr10:75538846-75539032 chr10 75538846 75539032 AluJb SINE + chr10:75540674-75540825 chr10 75540674 75540825 MARNA DNA - chr10:79544224-79544258 chr10 79544224 79544258 (TG)n Simple_repeat + chr10:81426181-81426220 chr10 81426181 81426220 (GGAGTA)n Simple_repeat + chr10:81435513-81435553 chr10 81435513 81435553 (TG)n Simple_repeat + chr10:81451603-81451711 chr10 81451603 81451711 MLT1H LTR - chr10:81481597-81481639 chr10 81481597 81481639 MSTA LTR + chr10:81482531-81482662 chr10 81482531 81482662 AluSx1 SINE + chr10:81483321-81483412 chr10 81483321 81483412 FLAM_C SINE + chr10:81488193-81488230 chr10 81488193 81488230 L2a LINE - chr10:81499902-81499908 chr10 81499902 81499908 (TTCTTT)n Simple_repeat + chr10:81524764-81524867 chr10 81524764 81524867 MIR SINE + chr10:81546999-81547029 chr10 81546999 81547029 (AC)n Simple_repeat + chr10:81554404-81554789 chr10 81554404 81554789 L1PA13 LINE + chr10:81556781-81556825 chr10 81556781 81556825 (TTG)n Simple_repeat + chr10:81558565-81558607 chr10 81558565 81558607 (CA)n Simple_repeat + chr10:81562366-81562679 chr10 81562366 81562679 AluSq2 SINE - chr10:81563226-81563534 chr10 81563226 81563534 AluY SINE + chr10:81564572-81564758 chr10 81564572 81564758 L1MA8 LINE - chr10:81564954-81565071 chr10 81564954 81565071 MER5B DNA - chr10:81565884-81565917 chr10 81565884 81565917 A-rich Low_complexity + chr10:81566295-81566380 chr10 81566295 81566380 L2a LINE + chr10:81566341-81566366 chr10 81566341 81566366 (TA)n Simple_repeat + chr10:81567532-81567713 chr10 81567532 81567713 MIR SINE - chr10:81568913-81568952 chr10 81568913 81568952 (TCCTAC)n Simple_repeat + chr10:81570229-81570657 chr10 81570229 81570657 MLT1C2 LTR + chr10:81572496-81572560 chr10 81572496 81572560 L1MC1 LINE - chr10:81572850-81573309 chr10 81572850 81573309 L1MB4 LINE - chr10:81574085-81574145 chr10 81574085 81574145 L1ME4c LINE + chr10:81581344-81581366 chr10 81581344 81581366 (GA)n Simple_repeat + chr10:81586752-81586779 chr10 81586752 81586779 (CCTCG)n Simple_repeat + chr10:81587322-81587340 chr10 81587322 81587340 (A)n Simple_repeat + chr10:82195235-82195505 chr10 82195235 82195505 AluJr SINE - chr10:88510136-88510242 chr10 88510136 88510242 L2d2 LINE - chr10:88511617-88511642 chr10 88511617 88511642 (AC)n Simple_repeat + chr10:88772043-88772085 chr10 88772043 88772085 GA-rich Low_complexity + chr10:89004733-89004864 chr10 89004733 89004864 AluSx SINE + chr10:89015175-89015200 chr10 89015175 89015200 (T)n Simple_repeat + chr10:89046933-89047036 chr10 89046933 89047036 MIR SINE + chr10:89047914-89048158 chr10 89047914 89048158 MIRb SINE - chr10:89069140-89069184 chr10 89069140 89069184 (AC)n Simple_repeat + chr10:89070239-89070273 chr10 89070239 89070273 (AT)n Simple_repeat + chr10:89070672-89070695 chr10 89070672 89070695 (AT)n Simple_repeat + chr10:89072043-89072115 chr10 89072043 89072115 MLT1O LTR + chr10:89076570-89076957 chr10 89076570 89076957 L1PA13 LINE + chr10:89078031-89078095 chr10 89078031 89078095 L1MA2 LINE - chr10:89078955-89078996 chr10 89078955 89078996 (TGT)n Simple_repeat + chr10:89079825-89080279 chr10 89079825 89080279 L1M4 LINE + chr10:89082486-89082570 chr10 89082486 89082570 (TA)n Simple_repeat + chr10:89084499-89084544 chr10 89084499 89084544 (TATT)n Simple_repeat + chr10:89084544-89084830 chr10 89084544 89084830 AluSq2 SINE - chr10:89085379-89085680 chr10 89085379 89085680 AluY SINE + chr10:89086718-89086815 chr10 89086718 89086815 L1MA8 LINE - chr10:89086821-89086906 chr10 89086821 89086906 L1MA8 LINE - chr10:89087105-89087222 chr10 89087105 89087222 MER5B DNA - chr10:89087282-89087916 chr10 89087282 89087916 L1MCa LINE - chr10:89088443-89088510 chr10 89088443 89088510 L2a LINE + chr10:89089665-89089831 chr10 89089665 89089831 MIR SINE - chr10:89092365-89092794 chr10 89092365 89092794 MLT1C2 LTR + chr10:89093026-89093399 chr10 89093026 89093399 MLT1A LTR + chr10:89094086-89094248 chr10 89094086 89094248 MLT1L LTR + chr10:89094291-89094594 chr10 89094291 89094594 AluYm1 SINE + chr10:89094629-89094688 chr10 89094629 89094688 L1MC1 LINE - chr10:89094688-89094765 chr10 89094688 89094765 (AT)n Simple_repeat + chr10:89094785-89094799 chr10 89094785 89094799 (TA)n Simple_repeat + chr10:89094890-89094923 chr10 89094890 89094923 (TATAT)n Simple_repeat + chr10:89094934-89095036 chr10 89094934 89095036 L1MC1 LINE - chr10:89095024-89095483 chr10 89095024 89095483 L1MB4 LINE - chr10:89096257-89096319 chr10 89096257 89096319 L1ME4c LINE + chr10:91408610-91408638 chr10 91408610 91408638 (TGA)n Simple_repeat + chr10:92481057-92481086 chr10 92481057 92481086 (TGTT)n Simple_repeat + chr10:92483566-92483614 chr10 92483566 92483614 Kanga1 DNA + chr10:92493303-92493454 chr10 92493303 92493454 MIR SINE - chr10:92497930-92498013 chr10 92497930 92498013 MIR3 SINE + chr10:92499407-92499440 chr10 92499407 92499440 A-rich Low_complexity + chr10:93557712-93557732 chr10 93557712 93557732 (AAC)n Simple_repeat + chr10:95046391-95046422 chr10 95046391 95046422 (GT)n Simple_repeat + chr10:95049141-95049175 chr10 95049141 95049175 (AAT)n Simple_repeat + chr10:95667552-95667587 chr10 95667552 95667587 (AAAAT)n Simple_repeat + chr10:95667661-95667699 chr10 95667661 95667699 (TACA)n Simple_repeat + chr10:95667992-95668190 chr10 95667992 95668190 MIRb SINE - chr10:96952569-96952595 chr10 96952569 96952595 (GT)n Simple_repeat + chr10:96990949-96991400 chr10 96990949 96991400 LTR7 LTR + chr10:97640256-97640273 chr10 97640256 97640273 (A)n Simple_repeat + chr10:97641170-97641345 chr10 97641170 97641345 L1MD LINE - chr10:97641506-97641536 chr10 97641506 97641536 A-rich Low_complexity + chr10:97642641-97642671 chr10 97642641 97642671 A-rich Low_complexity + chr10:97643022-97643165 chr10 97643022 97643165 MER103C DNA + chr10:97643816-97643883 chr10 97643816 97643883 L3b LINE + chr10:97644323-97644461 chr10 97644323 97644461 MIR SINE - chr10:97649913-97650000 chr10 97649913 97650000 L2b LINE + chr10:97653672-97653704 chr10 97653672 97653704 (ATA)n Simple_repeat + chr10:97654313-97654347 chr10 97654313 97654347 (AC)n Simple_repeat + chr10:97654934-97655122 chr10 97654934 97655122 MIR1_Amn SINE - chr10:97657823-97657946 chr10 97657823 97657946 Charlie15a DNA + chr10:97658939-97659078 chr10 97658939 97659078 L1M5 LINE + chr10:97659112-97659144 chr10 97659112 97659144 (ATT)n Simple_repeat + chr10:97659144-97659295 chr10 97659144 97659295 AluYh7 SINE - chr10:97659887-97659996 chr10 97659887 97659996 L2d LINE + chr10:97660029-97660228 chr10 97660029 97660228 MER20 DNA - chr10:97662432-97662554 chr10 97662432 97662554 MER5A DNA - chr10:97662587-97662666 chr10 97662587 97662666 L2 LINE - chr10:97662673-97662772 chr10 97662673 97662772 MIR3 SINE + chr10:97662844-97662924 chr10 97662844 97662924 L2c LINE - chr10:97665082-97665132 chr10 97665082 97665132 GA-rich Low_complexity + chr10:97665186-97665211 chr10 97665186 97665211 (CAGT)n Simple_repeat + chr10:97892224-97892253 chr10 97892224 97892253 (T)n Simple_repeat + chr10:97892515-97892737 chr10 97892515 97892737 Tigger4a DNA + chr10:97892937-97893288 chr10 97892937 97893288 CR1_Mam LINE + chr10:97893325-97893651 chr10 97893325 97893651 Tigger12A DNA - chr10:97893784-97894327 chr10 97893784 97894327 Tigger4a DNA + chr10:97893976-97894290 chr10 97893976 97894290 AluSx3 SINE - chr10:97895303-97895349 chr10 97895303 97895349 L2c LINE - chr10:97896306-97896424 chr10 97896306 97896424 FLAM_C SINE + chr10:97896636-97896832 chr10 97896636 97896832 MER58A DNA - chr10:97898500-97900055 chr10 97898500 97900055 L2a LINE - chr10:97899033-97899378 chr10 97899033 97899378 MLT1A0 LTR + chr10:97899608-97899914 chr10 97899608 97899914 AluSp SINE - chr10:97900262-97900305 chr10 97900262 97900305 A-rich Low_complexity + chr10:97900405-97900709 chr10 97900405 97900709 AluJb SINE + chr10:97900891-97901235 chr10 97900891 97901235 L2d LINE - chr10:97901490-97901798 chr10 97901490 97901798 AluJr SINE - chr10:97902062-97902112 chr10 97902062 97902112 (GT)n Simple_repeat + chr10:97902558-97902864 chr10 97902558 97902864 AluSx1 SINE - chr10:97903346-97903462 chr10 97903346 97903462 MLT1O LTR - chr10:97903745-97904042 chr10 97903745 97904042 AluJb SINE - chr10:97904663-97905631 chr10 97904663 97905631 Charlie25 DNA - chr10:97904819-97905126 chr10 97904819 97905126 AluSx SINE - chr10:97905861-97906371 chr10 97905861 97906371 L1ME3Cz LINE - chr10:97907914-97908208 chr10 97907914 97908208 AluSp SINE + chr10:97908451-97909029 chr10 97908451 97909029 MER5C DNA - chr10:97908482-97908771 chr10 97908482 97908771 AluY SINE - chr10:97909583-97909783 chr10 97909583 97909783 L1M6 LINE - chr10:97909799-97910109 chr10 97909799 97910109 AluY SINE + chr10:97910448-97910479 chr10 97910448 97910479 (T)n Simple_repeat + chr10:97910491-97910809 chr10 97910491 97910809 AluSx1 SINE - chr10:97911786-97912075 chr10 97911786 97912075 AluJb SINE + chr10:97912266-97913182 chr10 97912266 97913182 MLT2B3 LTR - chr10:97912316-97912646 chr10 97912316 97912646 Tigger3a DNA - chr10:97913889-97914094 chr10 97913889 97914094 AluJb SINE + chr10:97914097-97914243 chr10 97914097 97914243 (TTTC)n Simple_repeat + chr10:97914807-97914826 chr10 97914807 97914826 (AT)n Simple_repeat + chr10:97914972-97915140 chr10 97914972 97915140 MIRc SINE - chr10:97915672-97915786 chr10 97915672 97915786 MIR3 SINE - chr10:97923356-97923559 chr10 97923356 97923559 MER58A DNA - chr10:98727694-98727800 chr10 98727694 98727800 MER5B DNA + chr10:98727812-98727903 chr10 98727812 98727903 L1MB2 LINE - chr10:98731141-98731263 chr10 98731141 98731263 L2b LINE - chr10:98732235-98732395 chr10 98732235 98732395 MamRep605b LTR? + chr10:98736063-98736190 chr10 98736063 98736190 MamRTE1 LINE - chr10:98737420-98737595 chr10 98737420 98737595 AluJb SINE - chr10:98737721-98737784 chr10 98737721 98737784 MIRb SINE - chr10:98740322-98740448 chr10 98740322 98740448 AluJr SINE + chr10:98749943-98749985 chr10 98749943 98749985 FRAM SINE - chr10:98750073-98750205 chr10 98750073 98750205 AluJr SINE - chr10:98750357-98750391 chr10 98750357 98750391 (GCTGT)n Simple_repeat + chr10:98751559-98751601 chr10 98751559 98751601 (CCTCCTG)n Simple_repeat + chr10:99193977-99194171 chr10 99193977 99194171 MIR SINE - chr1:101516126-101516167 chr1 101516126 101516167 (GT)n Simple_repeat + chr1:101523518-101523550 chr1 101523518 101523550 (ACT)n Simple_repeat + chr1:101542814-101542850 chr1 101542814 101542850 (TTTTG)n Simple_repeat + chr1:10480332-10480427 chr1 10480332 10480427 L1ME3D LINE + chr1:10480433-10480470 chr1 10480433 10480470 (T)n Simple_repeat + chr1:109606074-109606363 chr1 109606074 109606363 AluSz6 SINE - chr11:100558175-100558209 chr11 100558175 100558209 (CGCGCC)n Simple_repeat + chr1:110139438-110139531 chr1 110139438 110139531 MER5A DNA - chr1:110139545-110139783 chr1 110139545 110139783 Tigger4a DNA - chr11:102929345-102929443 chr11 102929345 102929443 MamRep434 DNA + chr11:102932073-102932221 chr11 102932073 102932221 MER91B DNA - chr11:10323529-10323559 chr11 10323529 10323559 (T)n Simple_repeat + chr11:10323577-10323604 chr11 10323577 10323604 (TTCC)n Simple_repeat + chr11:10329838-10329931 chr11 10329838 10329931 (CTTC)n Simple_repeat + chr11:105871610-105871723 chr11 105871610 105871723 MLT1C2 LTR - chr11:105872807-105872830 chr11 105872807 105872830 (AATGAGAA)n Simple_repeat + chr11:105872988-105873003 chr11 105872988 105873003 (AATGAGAA)n Simple_repeat + chr1:110598397-110598549 chr1 110598397 110598549 MIR3 SINE - chr1:110598855-110599097 chr1 110598855 110599097 MIR SINE - chr1:110599543-110599755 chr1 110599543 110599755 MIRb SINE + chr1:110599788-110599923 chr1 110599788 110599923 L2d2 LINE + chr1:110599963-110600104 chr1 110599963 110600104 L2b LINE - chr1:110601305-110601375 chr1 110601305 110601375 L2b LINE + chr1:110601697-110601723 chr1 110601697 110601723 (AGGGA)n Simple_repeat + chr1:110602532-110602566 chr1 110602532 110602566 (TT)n Simple_repeat + chr11:107834686-107834837 chr11 107834686 107834837 MIRc SINE + chr11:107835048-107835342 chr11 107835048 107835342 AluJb SINE - chr11:107836417-107836451 chr11 107836417 107836451 (ATTTAAA)n Simple_repeat + chr11:107836510-107836686 chr11 107836510 107836686 AluSz SINE - chr11:107838020-107838183 chr11 107838020 107838183 FRAM SINE - chr1:11086196-11086274 chr1 11086196 11086274 L1M5 LINE - chr11:10874035-10874163 chr11 10874035 10874163 L2b LINE - chr11:10880961-10880995 chr11 10880961 10880995 (TATTAT)n Simple_repeat + chr11:10882892-10882924 chr11 10882892 10882924 (AAT)n Simple_repeat + chr11:10885521-10885546 chr11 10885521 10885546 (AAT)n Simple_repeat + chr11:10885836-10885849 chr11 10885836 10885849 (AAT)n Simple_repeat + chr1:110890972-110890994 chr1 110890972 110890994 (TTCT)n Simple_repeat + chr1:110892520-110892786 chr1 110892520 110892786 AluSz SINE - chr1:110893106-110893194 chr1 110893106 110893194 MIRb SINE - chr11:10893480-10893514 chr11 10893480 10893514 (AAAC)n Simple_repeat + chr1:110894175-110894318 chr1 110894175 110894318 L2a LINE - chr11:10894307-10894340 chr11 10894307 10894340 (TCCCCT)n Simple_repeat + chr1:110894315-110894426 chr1 110894315 110894426 L2 LINE - chr1:110895450-110895559 chr1 110895450 110895559 FLAM_C SINE + chr1:110896007-110896199 chr1 110896007 110896199 MER5B DNA - chr1:110896341-110896478 chr1 110896341 110896478 MER5A1 DNA + chr1:110900063-110900374 chr1 110900063 110900374 AluSx1 SINE - chr1:110900669-110900964 chr1 110900669 110900964 AluJb SINE + chr1:110901286-110901447 chr1 110901286 110901447 MIRc SINE + chr1:110904593-110904680 chr1 110904593 110904680 L2c LINE - chr1:111208880-111208892 chr1 111208880 111208892 (ATAAT)n Simple_repeat + chr11:115996072-115996105 chr11 115996072 115996105 (CA)n Simple_repeat + chr11:115999482-115999503 chr11 115999482 115999503 (AC)n Simple_repeat + chr11:116020383-116020406 chr11 116020383 116020406 (TG)n Simple_repeat + chr11:116077964-116077971 chr11 116077964 116077971 (CACA)n Simple_repeat + chr11:116209895-116209917 chr11 116209895 116209917 (A)n Simple_repeat + chr11:116224841-116224881 chr11 116224841 116224881 (CTC)n Simple_repeat + chr11:116225783-116225819 chr11 116225783 116225819 (ATG)n Simple_repeat + chr11:116228320-116228374 chr11 116228320 116228374 MIRb SINE - chr11:116235379-116235409 chr11 116235379 116235409 (A)n Simple_repeat + chr11:116240074-116240101 chr11 116240074 116240101 (ATTC)n Simple_repeat + chr11:116240110-116240154 chr11 116240110 116240154 (AC)n Simple_repeat + chr11:116253681-116253709 chr11 116253681 116253709 (AAT)n Simple_repeat + chr11:116259267-116259324 chr11 116259267 116259324 MIR3 SINE + chr11:116259469-116259493 chr11 116259469 116259493 (TTAT)n Simple_repeat + chr11:116269035-116269069 chr11 116269035 116269069 (T)n Simple_repeat + chr11:116270521-116270558 chr11 116270521 116270558 (ATAGCTG)n Simple_repeat + chr11:116271730-116271770 chr11 116271730 116271770 (AATG)n Simple_repeat + chr11:116274433-116274470 chr11 116274433 116274470 MIR1_Amn SINE - chr11:116289131-116289166 chr11 116289131 116289166 (TG)n Simple_repeat + chr11:116289179-116289211 chr11 116289179 116289211 (TGTGTG)n Simple_repeat + chr11:116293731-116293765 chr11 116293731 116293765 (CT)n Simple_repeat + chr11:116298798-116298820 chr11 116298798 116298820 (CTG)n Simple_repeat + chr11:116301494-116301531 chr11 116301494 116301531 GA-rich Low_complexity + chr11:116305635-116305670 chr11 116305635 116305670 (TG)n Simple_repeat + chr11:116307340-116307365 chr11 116307340 116307365 (GTTA)n Simple_repeat + chr11:116308975-116309019 chr11 116308975 116309019 MIRb SINE + chr11:116312771-116312817 chr11 116312771 116312817 Helitron1Nb_Mam RC + chr11:118586621-118602720 chr11 118586621 118602720 MER4CL34 LTR + chr11:118587742-118602564 chr11 118587742 118602564 HERVH-int LTR - chr11:118592785-118600883 chr11 118592785 118600883 HERVK-int LTR - chr11:118604983-118605005 chr11 118604983 118605005 (A)n Simple_repeat + chr11:118614900-118614987 chr11 118614900 118614987 LTR33 LTR - chr11:118616538-118616586 chr11 118616538 118616586 (CTATATT)n Simple_repeat + chr11:118791040-118791085 chr11 118791040 118791085 L3b LINE + chr11:118791950-118791997 chr11 118791950 118791997 (AC)n Simple_repeat + chr11:118792858-118792899 chr11 118792858 118792899 GA-rich Low_complexity + chr11:118795030-118795056 chr11 118795030 118795056 (CAGACA)n Simple_repeat + chr11:119263395-119263429 chr11 119263395 119263429 (TAT)n Simple_repeat + chr1:111978899-111978981 chr1 111978899 111978981 L1MA9 LINE + chr1:111979561-111979712 chr1 111979561 111979712 MER5A1 DNA - chr1:111979749-111979996 chr1 111979749 111979996 L1MB3 LINE + chr11:119939546-119939567 chr11 119939546 119939567 (A)n Simple_repeat + chr11:122941859-122942152 chr11 122941859 122942152 AluSx SINE + chr11:122942176-122942443 chr11 122942176 122942443 AluSx1 SINE + chr11:123309576-123309625 chr11 123309576 123309625 X6A_LINE LINE - chr11:123324323-123324340 chr11 123324323 123324340 (AT)n Simple_repeat + chr11:123329394-123329414 chr11 123329394 123329414 (T)n Simple_repeat + chr11:123360998-123361030 chr11 123360998 123361030 (TGAGA)n Simple_repeat + chr11:123363540-123363564 chr11 123363540 123363564 (CT)n Simple_repeat + chr11:123371034-123371059 chr11 123371034 123371059 (AAAT)n Simple_repeat + chr11:123394703-123394733 chr11 123394703 123394733 (TTCT)n Simple_repeat + chr11:123612619-123612718 chr11 123612619 123612718 (TTTTCT)n Simple_repeat + chr11:123612747-123612899 chr11 123612747 123612899 MIRb SINE + chr11:132726-132867 chr11 132726 132867 AluJo SINE - chr11:133105-133405 chr11 133105 133405 AluJr SINE - chr1:113393408-113393518 chr1 113393408 113393518 L2d2 LINE - chr1:113393530-113393573 chr1 113393530 113393573 L2b LINE - chr1:113408716-113408799 chr1 113408716 113408799 LTR48B LTR + chr1:113410391-113410438 chr1 113410391 113410438 (TG)n Simple_repeat + chr1:113413618-113413643 chr1 113413618 113413643 (TC)n Simple_repeat + chr11:134137714-134137737 chr11 134137714 134137737 (AC)n Simple_repeat + chr1:113417860-113417892 chr1 113417860 113417892 (GA)n Simple_repeat + chr1:113433187-113433212 chr1 113433187 113433212 (TTTAT)n Simple_repeat + chr1:113448422-113448441 chr1 113448422 113448441 (T)n Simple_repeat + chr1:113449024-113449105 chr1 113449024 113449105 MIRc SINE + chr1:113451791-113451854 chr1 113451791 113451854 L1M5 LINE - chr1:113452362-113452465 chr1 113452362 113452465 MIR SINE - chr1:113452947-113452994 chr1 113452947 113452994 AluYj4 SINE + chr1:113453871-113453988 chr1 113453871 113453988 Tigger1 DNA - chr1:113499705-113499882 chr1 113499705 113499882 MIRb SINE - chr1:113499935-113500061 chr1 113499935 113500061 L2d2 LINE - chr1:113500051-113500094 chr1 113500051 113500094 L2b LINE - chr1:113500161-113500247 chr1 113500161 113500247 MIRb SINE - chr1:113501453-113501548 chr1 113501453 113501548 Arthur1B DNA + chr1:113501535-113501634 chr1 113501535 113501634 Arthur1B DNA + chr1:113501685-113501819 chr1 113501685 113501819 AluSq2 SINE + chr1:113501819-113501837 chr1 113501819 113501837 (A)n Simple_repeat + chr1:113502410-113502581 chr1 113502410 113502581 MIRc SINE + chr1:113502791-113502935 chr1 113502791 113502935 MIR3 SINE - chr1:113503225-113503257 chr1 113503225 113503257 (ATGCAA)n Simple_repeat + chr1:113504458-113504610 chr1 113504458 113504610 L1M2 LINE + chr1:113505111-113505204 chr1 113505111 113505204 AluSz SINE - chr1:113510632-113510652 chr1 113510632 113510652 (T)n Simple_repeat + chr11:13984498-13984534 chr11 13984498 13984534 (GCTGGC)n Simple_repeat + chr11:13986780-13986805 chr11 13986780 13986805 (ATGA)n Simple_repeat + chr11:13987714-13987762 chr11 13987714 13987762 (CCTCTTC)n Simple_repeat + chr11:13989045-13989108 chr11 13989045 13989108 A-rich Low_complexity + chr11:13993224-13993259 chr11 13993224 13993259 (CCCCAG)n Simple_repeat + chr11:14005135-14005197 chr11 14005135 14005197 X17_LINE LINE + chr11:14006342-14006395 chr11 14006342 14006395 L2a LINE + chr11:14016516-14016564 chr11 14016516 14016564 (TTCA)n Simple_repeat + chr11:14025691-14025731 chr11 14025691 14025731 (AC)n Simple_repeat + chr11:14041020-14041046 chr11 14041020 14041046 (TTA)n Simple_repeat + chr11:14042661-14042701 chr11 14042661 14042701 (TTTACTT)n Simple_repeat + chr11:14062311-14062341 chr11 14062311 14062341 MER117 DNA - chr11:14079633-14079680 chr11 14079633 14079680 (TCTT)n Simple_repeat + chr11:14081023-14081114 chr11 14081023 14081114 L2a LINE - chr11:14081488-14081533 chr11 14081488 14081533 MIRb SINE + chr11:14081690-14081777 chr11 14081690 14081777 MIRc SINE - chr11:14082959-14083022 chr11 14082959 14083022 Tigger14a DNA - chr11:14086483-14086584 chr11 14086483 14086584 Charlie4z DNA - chr11:14087420-14087504 chr11 14087420 14087504 L2c LINE - chr11:14091994-14092071 chr11 14091994 14092071 L2a LINE - chr11:14163425-14163446 chr11 14163425 14163446 (CA)n Simple_repeat + chr11:14170134-14170186 chr11 14170134 14170186 MIR3 SINE - chr11:14170156-14170205 chr11 14170156 14170205 MIRb SINE - chr11:14170441-14170464 chr11 14170441 14170464 (CATT)n Simple_repeat + chr11:14239397-14239443 chr11 14239397 14239443 MIRb SINE - chr11:14262098-14262133 chr11 14262098 14262133 U2 snRNA - chr11:14267765-14267803 chr11 14267765 14267803 GA-rich Low_complexity + chr11:14283368-14283437 chr11 14283368 14283437 MIR SINE - chr1:114576601-114576636 chr1 114576601 114576636 A-rich Low_complexity + chr1:114576652-114577219 chr1 114576652 114577219 MER41C LTR + chr1:114696683-114696867 chr1 114696683 114696867 MIRc SINE + chr1:114698739-114698925 chr1 114698739 114698925 (AGAGAC)n Simple_repeat + chr11:150923-150940 chr11 150923 150940 (A)n Simple_repeat + chr11:151065-151185 chr11 151065 151185 AluJb SINE - chr11:151529-151670 chr11 151529 151670 L1ME4b LINE + chr11:152556-152957 chr11 152556 152957 L1ME4c LINE + chr11:152713-152833 chr11 152713 152833 AluJr4 SINE - chr11:152998-153101 chr11 152998 153101 U6 snRNA - chr11:153603-153712 chr11 153603 153712 Charlie29b DNA - chr11:167291-167342 chr11 167291 167342 AluSq2 SINE - chr11:167602-167685 chr11 167602 167685 MIR1_Amn SINE - chr11:16777810-16778115 chr11 16777810 16778115 AluSc8 SINE - chr11:16778174-16778475 chr11 16778174 16778475 AluSp SINE + chr11:18612791-18612830 chr11 18612791 18612830 (GTGTGT)n Simple_repeat + chr11:18612830-18612953 chr11 18612830 18612953 MIRb SINE - chr11:18613097-18613171 chr11 18613097 18613171 MIRc SINE - chr11:18613871-18613936 chr11 18613871 18613936 L2c LINE + chr11:18614558-18614638 chr11 18614558 18614638 L1M5 LINE + chr11:18623980-18624050 chr11 18623980 18624050 MIR1_Amn SINE + chr1:11968208-11968328 chr1 11968208 11968328 U5 snRNA + chr1:119685353-119685433 chr1 119685353 119685433 L2d2 LINE + chr1:119692142-119692168 chr1 119692142 119692168 (A)n Simple_repeat + chr1:11969863-11969983 chr1 11969863 11969983 U5 snRNA - chr1:120287137-120287170 chr1 120287137 120287170 MIRb SINE - chr1:120695410-120695475 chr1 120695410 120695475 MIRb SINE + chr1:120696351-120696495 chr1 120696351 120696495 Charlie4z DNA + chr1:120696785-120696981 chr1 120696785 120696981 MIR SINE + chr11:27353544-27353563 chr11 27353544 27353563 (ACA)n Simple_repeat + chr11:27635599-27635621 chr11 27635599 27635621 (A)n Simple_repeat + chr11:27635871-27636944 chr11 27635871 27636944 L1MC5a LINE - chr11:27636257-27636302 chr11 27636257 27636302 (CATAAC)n Simple_repeat + chr11:27636317-27636391 chr11 27636317 27636391 (TA)n Simple_repeat + chr11:27636504-27636812 chr11 27636504 27636812 AluSz SINE - chr11:27636984-27637128 chr11 27636984 27637128 MIRb SINE + chr11:27637537-27638952 chr11 27637537 27638952 L2b LINE + chr11:27637606-27637913 chr11 27637606 27637913 AluSq2 SINE + chr11:27637913-27638171 chr11 27637913 27638171 L2d LINE + chr11:27638175-27638592 chr11 27638175 27638592 MSTB LTR - chr11:27640509-27640552 chr11 27640509 27640552 (GT)n Simple_repeat + chr11:27641001-27641308 chr11 27641001 27641308 MLT2C2 LTR + chr11:27642154-27642461 chr11 27642154 27642461 AluJb SINE + chr11:27642611-27643288 chr11 27642611 27643288 MamGypLTR1a LTR - chr11:27643909-27644027 chr11 27643909 27644027 MIR3 SINE + chr11:27644197-27644549 chr11 27644197 27644549 LTR16C LTR - chr11:27644707-27644915 chr11 27644707 27644915 MIR SINE + chr11:27645302-27645347 chr11 27645302 27645347 (AC)n Simple_repeat + chr11:27646201-27646349 chr11 27646201 27646349 MIRb SINE + chr11:27646353-27646523 chr11 27646353 27646523 MIRb SINE - chr11:27647439-27647685 chr11 27647439 27647685 MER102a DNA + chr11:27647809-27647956 chr11 27647809 27647956 MIRc SINE - chr11:27648801-27648980 chr11 27648801 27648980 LTR88b LTR - chr11:27649088-27649400 chr11 27649088 27649400 AluJb SINE - chr11:27649790-27649982 chr11 27649790 27649982 MLT1O LTR - chr11:27650178-27650489 chr11 27650178 27650489 AluSz6 SINE - chr11:27650507-27650592 chr11 27650507 27650592 MIRb SINE - chr11:27650618-27656473 chr11 27650618 27656473 HERVH-int LTR - chr11:27656887-27657062 chr11 27656887 27657062 MIRb SINE + chr11:30359830-30359963 chr11 30359830 30359963 MER106B DNA + chr11:34124520-34124820 chr11 34124520 34124820 L2b LINE - chr11:3427398-3427509 chr11 3427398 3427509 AluY SINE + chr11:3428050-3428118 chr11 3428050 3428118 MADE1 DNA - chr1:1343860-1344002 chr1 1343860 1344002 L1MC4 LINE - chr1:1344413-1344543 chr1 1344413 1344543 AluSp SINE + chr11:34744989-34745019 chr11 34744989 34745019 A-rich Low_complexity + chr11:34753399-34753442 chr11 34753399 34753442 (TG)n Simple_repeat + chr11:34754129-34754182 chr11 34754129 34754182 (ATGATT)n Simple_repeat + chr11:34754766-34754793 chr11 34754766 34754793 (AC)n Simple_repeat + chr11:34755853-34755883 chr11 34755853 34755883 (CCTGT)n Simple_repeat + chr11:34767165-34767228 chr11 34767165 34767228 L2b LINE + chr11:34772768-34772810 chr11 34772768 34772810 L3 LINE + chr1:1367075-1367099 chr1 1367075 1367099 (GT)n Simple_repeat + chr1:140784-142271 chr1 140784 142271 MER21C LTR + chr1:142861830-142861869 chr1 142861830 142861869 (AC)n Simple_repeat + chr1:143164-147535 chr1 143164 147535 AluJb SINE - chr1:1434659-1434679 chr1 1434659 1434679 (T)n Simple_repeat + chr1:143732265-143732338 chr1 143732265 143732338 MER41B LTR - chr1:143735196-143735394 chr1 143735196 143735394 MER103C DNA - chr1:143744436-143744485 chr1 143744436 143744485 (GAG)n Simple_repeat + chr11:43878253-43878295 chr11 43878253 43878295 (TTGG)n Simple_repeat + chr11:43880883-43881019 chr11 43880883 43881019 MIR SINE + chr1:143915978-143916025 chr1 143915978 143916025 (CCGGCT)n Simple_repeat + chr11:44267384-44267474 chr11 44267384 44267474 MIR3 SINE - chr11:44270513-44270534 chr11 44270513 44270534 (GTTT)n Simple_repeat + chr1:1443193-1443258 chr1 1443193 1443258 L1MD3 LINE - chr1:1443323-1443384 chr1 1443323 1443384 L1MC3 LINE - chr1:144534037-144534201 chr1 144534037 144534201 U1 snRNA + chr1:144604536-144604558 chr1 144604536 144604558 (TTGA)n Simple_repeat + chr1:145097584-145097838 chr1 145097584 145097838 L2c LINE - chr1:145098606-145098789 chr1 145098606 145098789 MIRb SINE - chr1:145098805-145099036 chr1 145098805 145099036 MER20 DNA - chr1:145100166-145100338 chr1 145100166 145100338 MamRTE1 LINE + chr1:145100416-145100622 chr1 145100416 145100622 MIR SINE + chr1:145100668-145100968 chr1 145100668 145100968 AluSg4 SINE - chr1:145101191-145101372 chr1 145101191 145101372 L1ME4a LINE - chr1:145101735-145101872 chr1 145101735 145101872 MER5B DNA - chr1:145102663-145103016 chr1 145102663 145103016 MLT1A0 LTR - chr1:145104275-145104497 chr1 145104275 145104497 MIRb SINE + chr1:145106428-145106470 chr1 145106428 145106470 (GT)n Simple_repeat + chr1:145107329-145107363 chr1 145107329 145107363 (TA)n Simple_repeat + chr1:145107759-145108589 chr1 145107759 145108589 L1PA16 LINE + chr1:145108613-145108932 chr1 145108613 145108932 AluSx1 SINE + chr1:145109000-145109311 chr1 145109000 145109311 AluSc SINE + chr1:145110586-145111063 chr1 145110586 145111063 LTR33 LTR - chr1:145111172-145111200 chr1 145111172 145111200 (TTTA)n Simple_repeat + chr1:145111204-145111492 chr1 145111204 145111492 AluSz6 SINE - chr1:145111995-145112295 chr1 145111995 145112295 AluSc8 SINE - chr1:145113193-145114308 chr1 145113193 145114308 L2c LINE + chr1:145113482-145113773 chr1 145113482 145113773 AluSz6 SINE - chr1:145114441-145118260 chr1 145114441 145118260 L2a LINE - chr1:145115290-145115534 chr1 145115290 145115534 MIR SINE - chr1:145116299-145116334 chr1 145116299 145116334 (TTTTGTTT)n Simple_repeat + chr1:145118528-145118724 chr1 145118528 145118724 MIR SINE - chr1:145119014-145119158 chr1 145119014 145119158 Charlie4z DNA - chr1:145119670-145119701 chr1 145119670 145119701 (TTTG)n Simple_repeat + chr1:145120034-145120099 chr1 145120034 145120099 MIRb SINE - chr1:145382756-145382920 chr1 145382756 145382920 U1 snRNA + chr1:145591553-145591594 chr1 145591553 145591594 L2c LINE + chr1:145591803-145591868 chr1 145591803 145591868 MIRb SINE - chr1:146087004-146087021 chr1 146087004 146087021 (T)n Simple_repeat + chr1:146098687-146098763 chr1 146098687 146098763 LFSINE_Vert SINE + chr1:146107290-146107389 chr1 146107290 146107389 MIRb SINE + chr1:146107955-146107996 chr1 146107955 146107996 MIRb SINE + chr1:146113263-146113297 chr1 146113263 146113297 (AG)n Simple_repeat + chr1:146128862-146128917 chr1 146128862 146128917 MamTip2 DNA - chr1:146129186-146129205 chr1 146129186 146129205 (T)n Simple_repeat + chr1:146130797-146130824 chr1 146130797 146130824 (TTTG)n Simple_repeat + chr1:146133990-146134199 chr1 146133990 146134199 L3 LINE + chr1:146134701-146134889 chr1 146134701 146134889 MIRc SINE + chr1:146136797-146136857 chr1 146136797 146136857 MIRc SINE - chr1:146136845-146136956 chr1 146136845 146136956 L2c LINE - chr1:146138142-146138170 chr1 146138142 146138170 (AATG)n Simple_repeat + chr1:146138594-146138786 chr1 146138594 146138786 MIR SINE - chr1:146139414-146139447 chr1 146139414 146139447 (ATTTCT)n Simple_repeat + chr1:146140464-146140599 chr1 146140464 146140599 FLAM_A SINE - chr1:146142018-146142036 chr1 146142018 146142036 (TG)n Simple_repeat + chr1:146142508-146142653 chr1 146142508 146142653 L2 LINE + chr1:146150747-146150767 chr1 146150747 146150767 (GGT)n Simple_repeat + chr1:146215504-146215557 chr1 146215504 146215557 (AGACAG)n Simple_repeat + chr1:146223402-146223424 chr1 146223402 146223424 (GA)n Simple_repeat + chr1:146223424-146223482 chr1 146223424 146223482 (AC)n Simple_repeat + chr1:146223482-146223511 chr1 146223482 146223511 (GA)n Simple_repeat + chr1:146226552-146226600 chr1 146226552 146226600 GA-rich Low_complexity + chr1:146248591-146248686 chr1 146248591 146248686 L1MB5 LINE + chr1:146473134-146473203 chr1 146473134 146473203 tRNA-Asn-AAC tRNA + chr1:146544772-146544844 chr1 146544772 146544844 tRNA-His-CAY_ tRNA + chr1:146556165-146556303 chr1 146556165 146556303 U1 snRNA - chr1:146645271-146645373 chr1 146645271 146645373 MER5A1 DNA + chr1:146645495-146645655 chr1 146645495 146645655 L3 LINE - chr1:146646073-146646144 chr1 146646073 146646144 Tigger19a DNA + chr1:146648455-146651730 chr1 146648455 146651730 L1MC3 LINE + chr1:147569065-147570736 chr1 147569065 147570736 L1PA6 LINE - chr1:147570732-147570940 chr1 147570732 147570940 L1MEc LINE - chr1:147616533-147616603 chr1 147616533 147616603 MLT1I LTR - chr1:147676795-147680318 chr1 147676795 147680318 L3 LINE + chr1:147679974-147680002 chr1 147679974 147680002 (AATG)n Simple_repeat + chr1:147692579-147692599 chr1 147692579 147692599 (GGT)n Simple_repeat + chr1:147709199-147709220 chr1 147709199 147709220 (AAT)n Simple_repeat + chr1:147723291-147723319 chr1 147723291 147723319 (TAA)n Simple_repeat + chr1:147724159-147724173 chr1 147724159 147724173 (AT)n Simple_repeat + chr1:147724479-147724562 chr1 147724479 147724562 MER119 DNA - chr1:147724617-147724786 chr1 147724617 147724786 L1M5 LINE + chr1:147724800-147725012 chr1 147724800 147725012 MER33 DNA + chr1:147811704-147811736 chr1 147811704 147811736 A-rich Low_complexity + chr1:147812196-147812490 chr1 147812196 147812490 L1MA4 LINE - chr1:148000804-148000879 chr1 148000804 148000879 tRNA-Asn-AAC tRNA + chr1:148003191-148003630 chr1 148003191 148003630 L1MC4 LINE + chr11:48189932-48189965 chr11 48189932 48189965 (TATGTG)n Simple_repeat + chr1:148241464-148241630 chr1 148241464 148241630 U1 snRNA + chr1:148604906-148605072 chr1 148604906 148605072 U1 snRNA - chr1:148766936-148767102 chr1 148766936 148767102 U1 snRNA - chr1:149213050-149213072 chr1 149213050 149213072 (TTG)n Simple_repeat + chr1:149214523-149214756 chr1 149214523 149214756 AluYk3 SINE - chr1:149216839-149216891 chr1 149216839 149216891 (AT)n Simple_repeat + chr1:149222117-149222149 chr1 149222117 149222149 (GA)n Simple_repeat + chr1:149223549-149223615 chr1 149223549 149223615 MER45B DNA + chr1:149224057-149224221 chr1 149224057 149224221 U1 snRNA - chr1:149278784-149278857 chr1 149278784 149278857 tRNA-Glu-GAA tRNA - chr1:149284502-149284575 chr1 149284502 149284575 tRNA-Asn-AAC tRNA - chr1:149406239-149406277 chr1 149406239 149406277 L1PA14 LINE + chr1:149406243-149406285 chr1 149406243 149406285 L1PA15 LINE + chr1:149406290-149406333 chr1 149406290 149406333 A-rich Low_complexity + chr1:149407905-149407938 chr1 149407905 149407938 (TTAT)n Simple_repeat + chr1:149790949-149790991 chr1 149790949 149790991 L1PA15 LINE + chr1:149790996-149791035 chr1 149790996 149791035 A-rich Low_complexity + chr1:149792616-149792928 chr1 149792616 149792928 AluSq2 SINE - chr1:149803316-149803522 chr1 149803316 149803522 MER2 DNA + chr1:149805019-149805150 chr1 149805019 149805150 MIR3 SINE + chr1:149806495-149806658 chr1 149806495 149806658 MER5A DNA + chr1:149807069-149807080 chr1 149807069 149807080 (TTTC)n Simple_repeat + chr1:149807117-149807221 chr1 149807117 149807221 MIRc SINE + chr1:149807245-149807274 chr1 149807245 149807274 (TTTTG)n Simple_repeat + chr1:149808585-149808610 chr1 149808585 149808610 (ACCA)n Simple_repeat + chr1:149809291-149809568 chr1 149809291 149809568 AluJr SINE + chr1:149809568-149809609 chr1 149809568 149809609 (TC)n Simple_repeat + chr1:149809609-149809645 chr1 149809609 149809645 (CA)n Simple_repeat + chr1:149809955-149809999 chr1 149809955 149809999 (AC)n Simple_repeat + chr1:149815005-149815033 chr1 149815005 149815033 (CTCC)n Simple_repeat + chr1:149816856-149817598 chr1 149816856 149817598 L2a LINE - chr1:149817611-149817686 chr1 149817611 149817686 L1MEh LINE - chr1:149817745-149817981 chr1 149817745 149817981 EuthAT-2 DNA + chr1:149818092-149818432 chr1 149818092 149818432 L1MC4 LINE - chr1:149818436-149818905 chr1 149818436 149818905 MLT1D LTR - chr1:149818917-149819633 chr1 149818917 149819633 MLT1C2 LTR + chr1:149819094-149819391 chr1 149819094 149819391 AluSp SINE + chr1:149820499-149821041 chr1 149820499 149821041 L2 LINE + chr1:149820802-149820940 chr1 149820802 149820940 MER5A DNA - chr1:149821912-149821940 chr1 149821912 149821940 (GGAG)n Simple_repeat + chr1:149823240-149823286 chr1 149823240 149823286 (GACGG)n Simple_repeat + chr1:149833423-149833629 chr1 149833423 149833629 MER2 DNA - chr1:149844006-149844299 chr1 149844006 149844299 AluSq2 SINE + chr1:149844305-149844343 chr1 149844305 149844343 (AATA)n Simple_repeat + chr1:149845929-149845954 chr1 149845929 149845954 (T)n Simple_repeat + chr1:149845976-149846026 chr1 149845976 149846026 L1PA15 LINE - chr1:150325801-150325832 chr1 150325801 150325832 (ATGG)n Simple_repeat + chr1:150604361-150604775 chr1 150604361 150604775 L2 LINE - chr1:150605283-150605361 chr1 150605283 150605361 LTR5_Hs LTR + chr1:150605361-150607138 chr1 150605361 150607138 HERVK-int LTR - chr1:150614293-150614312 chr1 150614293 150614312 (ATT)n Simple_repeat + chr1:150614898-150615032 chr1 150614898 150615032 AluJo SINE + chr1:150615364-150616082 chr1 150615364 150616082 L1MCa LINE + chr1:150615459-150615582 chr1 150615459 150615582 AluJr SINE - chr1:150615735-150616027 chr1 150615735 150616027 AluSx1 SINE - chr1:150616082-150616267 chr1 150616082 150616267 AluJr SINE + chr1:150616758-150616887 chr1 150616758 150616887 FLAM_C SINE - chr11:509086-509105 chr11 509086 509105 (CA)n Simple_repeat + chr1:150968517-150968551 chr1 150968517 150968551 (AAAACA)n Simple_repeat + chr1:151813564-151813618 chr1 151813564 151813618 L2d2 LINE - chr1:151814191-151814214 chr1 151814191 151814214 (TCTTCC)n Simple_repeat + chr1:151814214-151814313 chr1 151814214 151814313 HY3 scRNA - chr1:151814313-151814326 chr1 151814313 151814326 (TCTTCC)n Simple_repeat + chr1:151816485-151816813 chr1 151816485 151816813 MLT1J1 LTR + chr1:151817779-151817909 chr1 151817779 151817909 AluJr4 SINE - chr1:151827551-151827596 chr1 151827551 151827596 AluYm1 SINE + chr1:151827572-151827623 chr1 151827572 151827623 AluYh9 SINE + chr1:151827654-151827690 chr1 151827654 151827690 (TGA)n Simple_repeat + chr1:153634432-153634511 chr1 153634432 153634511 A-rich Low_complexity + chr1:153634465-153634490 chr1 153634465 153634490 (CAAA)n Simple_repeat + chr1:153950847-153950970 chr1 153950847 153950970 MIRc SINE - chr1:153951163-153951354 chr1 153951163 153951354 AluJo SINE - chr1:154952152-154952276 chr1 154952152 154952276 MER5B DNA - chr1:155533481-155533632 chr1 155533481 155533632 MIRb SINE + chr1:155534490-155534623 chr1 155534490 155534623 L2d LINE + chr1:155535180-155535298 chr1 155535180 155535298 MIRb SINE - chr1:155535510-155535635 chr1 155535510 155535635 L2b LINE + chr1:155535667-155535807 chr1 155535667 155535807 MLT1E2 LTR + chr1:155538530-155538556 chr1 155538530 155538556 (TTGTT)n Simple_repeat + chr1:155539572-155539696 chr1 155539572 155539696 Tigger4a DNA - chr1:155572280-155572305 chr1 155572280 155572305 (CAA)n Simple_repeat + chr1:156051808-156051906 chr1 156051808 156051906 GA-rich Low_complexity + chr1:156635645-156635667 chr1 156635645 156635667 (CCA)n Simple_repeat + chr1:156722421-156722475 chr1 156722421 156722475 MIRc SINE - chr1:156722757-156722856 chr1 156722757 156722856 MIRc SINE + chr1:157015164-157015200 chr1 157015164 157015200 (CTCCCT)n Simple_repeat + chr1:157358-157742 chr1 157358 157742 L1ME4c LINE + chr1:157498-157618 chr1 157498 157618 AluJr4 SINE - chr1:157783-157886 chr1 157783 157886 U6 snRNA - chr1:158388-158495 chr1 158388 158495 Charlie29b DNA - chr11:59323901-59323974 chr11 59323901 59323974 tRNA-Lys-AAA tRNA + chr1:159995774-159995810 chr1 159995774 159995810 G-rich Low_complexity + chr1:160258754-160258939 chr1 160258754 160258939 AluSg7 SINE - chr1:160959257-160959390 chr1 160959257 160959390 AluJr4 SINE - chr1:160960525-160960569 chr1 160960525 160960569 (GTTT)n Simple_repeat + chr1:160962795-160962973 chr1 160962795 160962973 MIRb SINE - chr1:160963065-160963525 chr1 160963065 160963525 L3 LINE - chr1:160964457-160964578 chr1 160964457 160964578 MIR SINE + chr11:61065167-61065198 chr11 61065167 61065198 (TTTTGT)n Simple_repeat + chr1:161337979-161338208 chr1 161337979 161338208 MIRb SINE + chr1:161410611-161410686 chr1 161410611 161410686 tRNA-Asp-GAY tRNA - chr1:161417017-161417089 chr1 161417017 161417089 tRNA-Glu-GAG_ tRNA - chr1:161418029-161418104 chr1 161418029 161418104 tRNA-Asp-GAY tRNA - chr1:161420466-161420540 chr1 161420466 161420540 tRNA-Gly-GGY tRNA + chr1:161424397-161424469 chr1 161424397 161424469 tRNA-Glu-GAG_ tRNA - chr1:161427897-161427971 chr1 161427897 161427971 tRNA-Gly-GGY tRNA + chr1:161431808-161431880 chr1 161431808 161431880 tRNA-Glu-GAG_ tRNA - chr1:161435257-161435331 chr1 161435257 161435331 tRNA-Gly-GGY tRNA + chr1:161439188-161439260 chr1 161439188 161439260 tRNA-Glu-GAG_ tRNA - chr1:161440201-161440276 chr1 161440201 161440276 tRNA-Asp-GAY tRNA - chr1:161500902-161500974 chr1 161500902 161500974 tRNA-Gly-GGA tRNA + chr1:16158641-16158680 chr1 16158641 16158680 MamSINE1 SINE + chr11:61920881-61922225 chr11 61920881 61922225 L1MD LINE - chr11:61921201-61921228 chr11 61921201 61921228 (T)n Simple_repeat + chr11:61921228-61921345 chr11 61921228 61921345 AluJr4 SINE - chr11:6226567-6226597 chr11 6226567 6226597 (AC)n Simple_repeat + chr11:62506280-62506454 chr11 62506280 62506454 AluSx SINE + chr11:62507100-62507400 chr11 62507100 62507400 AluSz6 SINE - chr11:62507424-62507600 chr11 62507424 62507600 L1PA10 LINE - chr11:62516038-62516338 chr11 62516038 62516338 AluSx3 SINE - chr11:62516523-62516648 chr11 62516523 62516648 MIR3 SINE + chr11:62516949-62517069 chr11 62516949 62517069 AluJr SINE - chr11:62517090-62517667 chr11 62517090 62517667 AluSq2 SINE - chr11:62517260-62517550 chr11 62517260 62517550 AluSq2 SINE - chr11:62517686-62517934 chr11 62517686 62517934 MIRb SINE + chr11:62518079-62518379 chr11 62518079 62518379 AluYh3 SINE + chr11:62522017-62522297 chr11 62522017 62522297 AluSz SINE + chr11:62522409-62522709 chr11 62522409 62522709 AluSz SINE + chr11:62523316-62523627 chr11 62523316 62523627 AluSp SINE + chr11:62523627-62523696 chr11 62523627 62523696 AluSx SINE + chr11:62523707-62523776 chr11 62523707 62523776 (AT)n Simple_repeat + chr11:62523776-62523913 chr11 62523776 62523913 AluJo SINE - chr11:62524104-62524411 chr11 62524104 62524411 AluYh3 SINE - chr11:62524545-62524593 chr11 62524545 62524593 (AT)n Simple_repeat + chr11:62524615-62525932 chr11 62524615 62525932 Charlie1a DNA - chr11:62524698-62525813 chr11 62524698 62525813 MER21B LTR - chr11:62524911-62524971 chr11 62524911 62524971 (TTTC)n Simple_repeat + chr11:62524971-62525016 chr11 62524971 62525016 (TCCT)n Simple_repeat + chr11:62525016-62525139 chr11 62525016 62525139 (TTTC)n Simple_repeat + chr11:62525139-62525168 chr11 62525139 62525168 (TTCC)n Simple_repeat + chr11:62619133-62619277 chr11 62619133 62619277 AluJb SINE + chr11:62619794-62619921 chr11 62619794 62619921 FLAM_C SINE + chr11:63528210-63528372 chr11 63528210 63528372 MER5A DNA - chr11:63529016-63529264 chr11 63529016 63529264 MIR3 SINE + chr11:63529614-63529675 chr11 63529614 63529675 (TCC)n Simple_repeat + chr11:63531202-63531247 chr11 63531202 63531247 (CGG)n Simple_repeat + chr11:63687469-63687682 chr11 63687469 63687682 L2b LINE + chr11:63950776-63950913 chr11 63950776 63950913 MIR SINE - chr11:63950918-63951017 chr11 63950918 63951017 L2a LINE + chr11:63950963-63951102 chr11 63950963 63951102 L3b LINE + chr11:63951249-63951639 chr11 63951249 63951639 L2a LINE + chr11:64015358-64015612 chr11 64015358 64015612 L2a LINE + chr11:64015694-64015765 chr11 64015694 64015765 MIR SINE - chr11:64015977-64016049 chr11 64015977 64016049 MIRc SINE - chr11:64016297-64016328 chr11 64016297 64016328 (TGGCC)n Simple_repeat + chr11:64531986-64532009 chr11 64531986 64532009 (TGC)n Simple_repeat + chr11:65192666-65192690 chr11 65192666 65192690 (CAAA)n Simple_repeat + chr11:65268025-65268050 chr11 65268025 65268050 (GAAG)n Simple_repeat + chr11:65269973-65270016 chr11 65269973 65270016 A-rich Low_complexity + chr11:65437848-65437855 chr11 65437848 65437855 (ATGTTTT)n Simple_repeat + chr11:65542533-65542743 chr11 65542533 65542743 L1M5 LINE + chr11:65543259-65543329 chr11 65543259 65543329 MIR3 SINE - chr11:65621768-65621819 chr11 65621768 65621819 MamGypsy2-LTR LTR - chr1:165695363-165695419 chr1 165695363 165695419 (TTATCA)n Simple_repeat + chr11:65715342-65715389 chr11 65715342 65715389 (GCAG)n Simple_repeat + chr11:6599697-6599724 chr11 6599697 6599724 (AGGG)n Simple_repeat + chr11:66199522-66199812 chr11 66199522 66199812 AluSx4 SINE + chr11:66246110-66246175 chr11 66246110 66246175 MIRb SINE + chr11:66246635-66246721 chr11 66246635 66246721 MIR1_Amn SINE - chr11:66247428-66247467 chr11 66247428 66247467 (CAAGTCC)n Simple_repeat + chr11:66314462-66314481 chr11 66314462 66314481 (GGC)n Simple_repeat + chr11:66315012-66315092 chr11 66315012 66315092 MIR3 SINE - chr11:66316224-66316307 chr11 66316224 66316307 L2a LINE - chr11:66317524-66317610 chr11 66317524 66317610 MamTip2 DNA - chr11:66317921-66318052 chr11 66317921 66318052 FLAM_C SINE + chr11:66318047-66318135 chr11 66318047 66318135 FLAM_C SINE + chr11:66318135-66318146 chr11 66318135 66318146 SVA_E Retroposon - chr11:66318270-66318345 chr11 66318270 66318345 MER46C DNA - chr11:66318374-66318518 chr11 66318374 66318518 FordPrefect_a DNA + chr11:66319935-66320044 chr11 66319935 66320044 FLAM_A SINE + chr11:66320326-66320351 chr11 66320326 66320351 (TC)n Simple_repeat + chr11:66320351-66320383 chr11 66320351 66320383 (CA)n Simple_repeat + chr11:66321354-66321419 chr11 66321354 66321419 L2d LINE - chr11:66321626-66321946 chr11 66321626 66321946 AluJb SINE + chr11:66323178-66323328 chr11 66323178 66323328 L2b LINE - chr11:66324874-66324928 chr11 66324874 66324928 (TCAT)n Simple_repeat + chr11:66327897-66327995 chr11 66327897 66327995 MIR1_Amn SINE + chr11:66328482-66328565 chr11 66328482 66328565 MIRb SINE - chr11:66329364-66329489 chr11 66329364 66329489 MIR3 SINE - chr11:66330025-66330210 chr11 66330025 66330210 L3 LINE + chr11:6698697-6698717 chr11 6698697 6698717 (A)n Simple_repeat + chr1:16798393-16798443 chr1 16798393 16798443 MLT1B LTR - chr1:168050971-168051036 chr1 168050971 168051036 MIRb SINE + chr1:168052196-168052312 chr1 168052196 168052312 L2c LINE + chr1:168052396-168052447 chr1 168052396 168052447 L2d2 LINE + chr1:16813068-16813100 chr1 16813068 16813100 (CCAGGC)n Simple_repeat + chr1:16817448-16817476 chr1 16817448 16817476 (GGCAG)n Simple_repeat + chr1:16819747-16819795 chr1 16819747 16819795 (AAAT)n Simple_repeat + chr1:16819947-16819972 chr1 16819947 16819972 (AAAAT)n Simple_repeat + chr1:16820213-16820369 chr1 16820213 16820369 LTR2 LTR + chr1:16820439-16820551 chr1 16820439 16820551 MIRb SINE - chr1:16821535-16821554 chr1 16821535 16821554 (A)n Simple_repeat + chr1:16821780-16822184 chr1 16821780 16822184 MLT1J2 LTR + chr11:68227614-68227687 chr11 68227614 68227687 tRNA-Ala-GCY tRNA - chr1:16823973-16824148 chr1 16823973 16824148 L2a LINE + chr1:16825185-16825257 chr1 16825185 16825257 MIRb SINE + chr1:16836771-16836802 chr1 16836771 16836802 (AAAT)n Simple_repeat + chr1:16838973-16839015 chr1 16838973 16839015 (GA)n Simple_repeat + chr1:16839351-16839381 chr1 16839351 16839381 (ATT)n Simple_repeat + chr1:16840100-16840164 chr1 16840100 16840164 MER45B DNA + chr1:16840616-16840780 chr1 16840616 16840780 U1 snRNA - chr1:16841165-16841303 chr1 16841165 16841303 Charlie4 DNA - chr1:16841471-16841499 chr1 16841471 16841499 (T)n Simple_repeat + chr1:16841816-16842362 chr1 16841816 16842362 MER41E LTR + chr1:16871135-16871203 chr1 16871135 16871203 tRNA-His-CAY_ tRNA - chr1:16872433-16872504 chr1 16872433 16872504 tRNA-Gly-GGG tRNA - chr11:68856022-68856080 chr11 68856022 68856080 MER91A DNA + chr1:16942782-16942809 chr1 16942782 16942809 (TA)n Simple_repeat + chr1:16950919-16950948 chr1 16950919 16950948 (CCTGCT)n Simple_repeat + chr1:16965863-16965884 chr1 16965863 16965884 (CAG)n Simple_repeat + chr1:16966372-16966538 chr1 16966372 16966538 L1MA10 LINE + chr1:16966614-16968425 chr1 16966614 16968425 L1MA2 LINE + chr1:16967073-16967381 chr1 16967073 16967381 AluSp SINE + chr1:16967381-16967694 chr1 16967381 16967694 AluY SINE + chr1:16968506-16968809 chr1 16968506 16968809 AluJb SINE - chr1:16969831-16969915 chr1 16969831 16969915 L2b LINE + chr1:16985600-16985633 chr1 16985600 16985633 U1 snRNA - chr1:16993279-16993443 chr1 16993279 16993443 U1 snRNA - chr1:16993827-16993965 chr1 16993827 16993965 Charlie4a DNA - chr1:16994133-16994163 chr1 16994133 16994163 (T)n Simple_repeat + chr1:17011843-17011863 chr1 17011843 17011863 (T)n Simple_repeat + chr11:70235027-70235103 chr11 70235027 70235103 Kanga1c DNA + chr11:70241942-70242086 chr11 70241942 70242086 MLT1D LTR + chr1:17066488-17066626 chr1 17066488 17066626 Charlie4 DNA + chr1:17067010-17067174 chr1 17067010 17067174 U1 snRNA + chr1:17074821-17074854 chr1 17074821 17074854 U1 snRNA + chr1:17188415-17188486 chr1 17188415 17188486 tRNA-Gly-GGG tRNA + chr1:17189720-17189788 chr1 17189720 17189788 tRNA-His-CAY_ tRNA + chr1:17197034-17197280 chr1 17197034 17197280 MLT1A0 LTR + chr1:17199077-17199149 chr1 17199077 17199149 tRNA-Glu-GAA tRNA + chr1:17200204-17200343 chr1 17200204 17200343 U1 snRNA + chr1:17200842-17200910 chr1 17200842 17200910 tRNA-His-CAY_ tRNA - chr1:17200975-17201270 chr1 17200975 17201270 AluSz SINE - chr1:17201957-17202031 chr1 17201957 17202031 tRNA-Asn-AAC tRNA + chr1:172095-172146 chr1 172095 172146 AluSq2 SINE - chr1:17220907-17221457 chr1 17220907 17221457 MER41E LTR - chr1:17221773-17221795 chr1 17221773 17221795 (A)n Simple_repeat + chr1:17221952-17222090 chr1 17221952 17222090 Charlie4 DNA + chr1:17222474-17222638 chr1 17222474 17222638 U1 snRNA + chr1:17223092-17223156 chr1 17223092 17223156 MER45B DNA - chr1:172406-172489 chr1 172406 172489 MIR1_Amn SINE - chr1:17244795-17244818 chr1 17244795 17244818 (T)n Simple_repeat + chr1:173387063-173387087 chr1 173387063 173387087 (T)n Simple_repeat + chr1:173387763-173387794 chr1 173387763 173387794 A-rich Low_complexity + chr1:173413405-173413432 chr1 173413405 173413432 (CA)n Simple_repeat + chr1:173445209-173445275 chr1 173445209 173445275 L2b LINE + chr1:173445655-173445716 chr1 173445655 173445716 (TATATTT)n Simple_repeat + chr11:73581656-73581737 chr11 73581656 73581737 L1ME3Cz LINE - chr11:73582378-73582630 chr11 73582378 73582630 AluSz SINE - chr11:73583257-73583452 chr11 73583257 73583452 MER102b DNA - chr1:173764983-173765248 chr1 173764983 173765248 AluSx3 SINE - chr1:173765458-173765734 chr1 173765458 173765734 AluJo SINE + chr1:173765740-173766050 chr1 173765740 173766050 AluJb SINE + chr1:173766090-173766383 chr1 173766090 173766383 AluJb SINE + chr1:173767032-173768183 chr1 173767032 173768183 L2a LINE + chr1:173767233-173767725 chr1 173767233 173767725 MLT1J LTR - chr1:173768182-173768229 chr1 173768182 173768229 MIRb SINE - chr1:173768388-173768465 chr1 173768388 173768465 MIR3 SINE + chr1:173768457-173768551 chr1 173768457 173768551 L2c LINE - chr1:173827720-173828020 chr1 173827720 173828020 AluSz SINE + chr1:173831688-173831934 chr1 173831688 173831934 AluSx1 SINE - chr1:173832162-173832399 chr1 173832162 173832399 AluSg4 SINE + chr1:173833120-173833234 chr1 173833120 173833234 FRAM SINE + chr1:173834074-173834348 chr1 173834074 173834348 AluSz SINE + chr1:173836374-173836666 chr1 173836374 173836666 AluSx SINE + chr11:74201871-74201964 chr11 74201871 74201964 MIRc SINE - chr11:74456711-74456739 chr11 74456711 74456739 (T)n Simple_repeat + chr11:75285299-75285359 chr11 75285299 75285359 L2c LINE - chr11:76152395-76152689 chr11 76152395 76152689 AluSp SINE - chr11:76153689-76153844 chr11 76153689 76153844 MER5A1 DNA + chr11:76154488-76154684 chr11 76154488 76154684 MIRc SINE + chr11:76155231-76155281 chr11 76155231 76155281 MIRb SINE + chr11:77851226-77851280 chr11 77851226 77851280 MER5A1 DNA - chr1:177987564-177987590 chr1 177987564 177987590 (AAAT)n Simple_repeat + chr1:178001058-178001101 chr1 178001058 178001101 L1MB8 LINE + chr11:7910669-7910699 chr11 7910669 7910699 (TCAAAA)n Simple_repeat + chr11:82783840-82784136 chr11 82783840 82784136 AluJb SINE + chr11:82785088-82785251 chr11 82785088 82785251 FRAM SINE + chr11:82785550-82785847 chr11 82785550 82785847 AluSz SINE + chr11:82786228-82786258 chr11 82786228 82786258 (GGAGA)n Simple_repeat + chr11:82786886-82787041 chr11 82786886 82787041 MIR3 SINE - chr11:82788840-82788986 chr11 82788840 82788986 FAM SINE - chr11:82790669-82790964 chr11 82790669 82790964 AluSx1 SINE + chr11:82790964-82791109 chr11 82790964 82791109 FRAM SINE + chr11:82792072-82792282 chr11 82792072 82792282 MIRb SINE + chr11:82792914-82793024 chr11 82792914 82793024 MIRb SINE + chr11:82793061-82793193 chr11 82793061 82793193 MER5A DNA + chr11:82793204-82793654 chr11 82793204 82793654 MLT2A1 LTR - chr1:182857334-182857388 chr1 182857334 182857388 MIRc SINE - chr1:182857387-182857479 chr1 182857387 182857479 MIRb SINE + chr11:82900824-82900894 chr11 82900824 82900894 Alu SINE - chr11:82901557-82901604 chr11 82901557 82901604 (ATTTT)n Simple_repeat + chr11:82901943-82901999 chr11 82901943 82901999 (TTCCTG)n Simple_repeat + chr11:82902131-82902304 chr11 82902131 82902304 MIRb SINE + chr11:82902637-82902700 chr11 82902637 82902700 MIR3 SINE + chr11:82902798-82902966 chr11 82902798 82902966 L2c LINE - chr11:82903991-82904051 chr11 82903991 82904051 L2c LINE + chr11:82904141-82904302 chr11 82904141 82904302 MIRc SINE + chr1:185263241-185264095 chr1 185263241 185264095 L1ME1 LINE - chr1:185263439-185263594 chr1 185263439 185263594 FAM SINE - chr11:85368281-85368475 chr11 85368281 85368475 MER3 DNA + chr11:85368857-85369012 chr11 85368857 85369012 L1ME4a LINE + chr11:85866467-85866485 chr11 85866467 85866485 SVA_A Retroposon - chr11:87925861-87925903 chr11 87925861 87925903 (ATTT)n Simple_repeat + chr11:87948483-87948517 chr11 87948483 87948517 (GA)n Simple_repeat + chr11:88008626-88008657 chr11 88008626 88008657 (AC)n Simple_repeat + chr11:88008656-88008721 chr11 88008656 88008721 A-rich Low_complexity + chr11:88010979-88011014 chr11 88010979 88011014 (TC)n Simple_repeat + chr11:88014910-88014993 chr11 88014910 88014993 MER91A DNA + chr11:88017947-88017976 chr11 88017947 88017976 (TTTA)n Simple_repeat + chr11:88019294-88019394 chr11 88019294 88019394 Charlie4z DNA + chr11:88019817-88019919 chr11 88019817 88019919 L2d2 LINE + chr11:88023412-88023503 chr11 88023412 88023503 MIR3 SINE + chr11:88024012-88024054 chr11 88024012 88024054 (AT)n Simple_repeat + chr11:88024737-88024778 chr11 88024737 88024778 (GAAA)n Simple_repeat + chr11:88026106-88026251 chr11 88026106 88026251 MIR3 SINE + chr11:89926546-89926585 chr11 89926546 89926585 MIR3 SINE + chr11:89928128-89928456 chr11 89928128 89928456 L1MEg2 LINE + chr11:89929629-89929855 chr11 89929629 89929855 MIR SINE + chr11:89931383-89931587 chr11 89931383 89931587 MIR SINE + chr11:89933051-89933080 chr11 89933051 89933080 A-rich Low_complexity + chr11:91958079-91958132 chr11 91958079 91958132 (CCTCT)n Simple_repeat + chr11:91960793-91960851 chr11 91960793 91960851 GA-rich Low_complexity + chr11:91960890-91960939 chr11 91960890 91960939 (T)n Simple_repeat + chr11:91961080-91961099 chr11 91961080 91961099 (T)n Simple_repeat + chr11:91962619-91962689 chr11 91962619 91962689 (T)n Simple_repeat + chr11:91962952-91962978 chr11 91962952 91962978 (T)n Simple_repeat + chr11:91965794-91965820 chr11 91965794 91965820 (T)n Simple_repeat + chr11:91966072-91966102 chr11 91966072 91966102 (ATTTAC)n Simple_repeat + chr11:91967233-91967445 chr11 91967233 91967445 X6b_DNA DNA - chr11:91967788-91968087 chr11 91967788 91968087 AluSg SINE + chr11:91969181-91969352 chr11 91969181 91969352 Chap1a_Mam DNA - chr11:91971153-91971259 chr11 91971153 91971259 MIR SINE - chr11:91971375-91971485 chr11 91971375 91971485 Charlie16 DNA - chr11:91971553-91971750 chr11 91971553 91971750 MamRep1879 DNA + chr11:91972138-91972372 chr11 91972138 91972372 MIR SINE - chr11:91975672-91975805 chr11 91975672 91975805 L2c LINE - chr11:91977460-91977567 chr11 91977460 91977567 MER53 DNA + chr11:91978749-91978971 chr11 91978749 91978971 MER58A DNA - chr11:91980991-91981152 chr11 91980991 91981152 FAM SINE + chr11:91982041-91982164 chr11 91982041 91982164 MIR3 SINE - chr11:91984289-91984503 chr11 91984289 91984503 MIRb SINE - chr11:91984859-91985016 chr11 91984859 91985016 L2a LINE - chr11:91985015-91985112 chr11 91985015 91985112 UCON80_AMi Unknown - chr11:91985779-91985820 chr11 91985779 91985820 (TCTTT)n Simple_repeat + chr11:91985881-91985963 chr11 91985881 91985963 MER5B DNA + chr11:91987130-91987235 chr11 91987130 91987235 Charlie15a DNA - chr11:91987327-91987413 chr11 91987327 91987413 L3 LINE - chr11:91987863-91987882 chr11 91987863 91987882 (ATT)n Simple_repeat + chr11:91988171-91988187 chr11 91988171 91988187 (ATT)n Simple_repeat + chr11:91988528-91988658 chr11 91988528 91988658 L2d2 LINE + chr11:91988747-91988919 chr11 91988747 91988919 MIR SINE + chr11:91989560-91989586 chr11 91989560 91989586 (TA)n Simple_repeat + chr11:91990570-91990675 chr11 91990570 91990675 X17_LINE LINE + chr11:91991362-91991447 chr11 91991362 91991447 L2a LINE - chr11:91992237-91992320 chr11 91992237 91992320 MIRb SINE + chr11:91992685-91992745 chr11 91992685 91992745 A-rich Low_complexity + chr11:91993396-91993433 chr11 91993396 91993433 (GT)n Simple_repeat + chr11:91996479-91996517 chr11 91996479 91996517 (AC)n Simple_repeat + chr11:91996784-91996804 chr11 91996784 91996804 (GT)n Simple_repeat + chr11:91996803-91996840 chr11 91996803 91996840 (TA)n Simple_repeat + chr11:91997054-91997213 chr11 91997054 91997213 MIRb SINE - chr11:91998310-91998336 chr11 91998310 91998336 OldhAT1 DNA + chr11:91998516-91998715 chr11 91998516 91998715 L2b LINE - chr11:92001275-92001499 chr11 92001275 92001499 MIRb SINE - chr11:92006201-92006342 chr11 92006201 92006342 MER113A DNA - chr11:92010115-92010368 chr11 92010115 92010368 Tigger13a DNA + chr11:92011050-92011251 chr11 92011050 92011251 AluJb SINE + chr11:92011308-92011403 chr11 92011308 92011403 Tigger13a DNA + chr11:92011723-92011790 chr11 92011723 92011790 (TA)n Simple_repeat + chr11:92012594-92012671 chr11 92012594 92012671 MIR SINE - chr11:92012719-92012989 chr11 92012719 92012989 L1MA4A LINE - chr11:92012994-92013141 chr11 92012994 92013141 MIRb SINE - chr11:92015076-92015335 chr11 92015076 92015335 AluSx SINE - chr11:92016029-92016276 chr11 92016029 92016276 L2a LINE + chr11:92017331-92017510 chr11 92017331 92017510 L2c LINE - chr11:92018501-92018541 chr11 92018501 92018541 (TAT)n Simple_repeat + chr11:92022666-92022703 chr11 92022666 92022703 (AC)n Simple_repeat + chr11:92024246-92024283 chr11 92024246 92024283 (AC)n Simple_repeat + chr11:92024295-92024412 chr11 92024295 92024412 MIRb SINE - chr11:92024903-92025069 chr11 92024903 92025069 L2c LINE + chr11:92026031-92026177 chr11 92026031 92026177 AluJr SINE + chr11:92026179-92026276 chr11 92026179 92026276 (AAGG)n Simple_repeat + chr11:92026678-92026718 chr11 92026678 92026718 (TA)n Simple_repeat + chr11:92028285-92028388 chr11 92028285 92028388 L2b LINE - chr11:92028970-92029072 chr11 92028970 92029072 MER5B DNA + chr11:92029408-92029633 chr11 92029408 92029633 MIRb SINE + chr11:92030452-92030570 chr11 92030452 92030570 L2d2 LINE + chr11:92031804-92031896 chr11 92031804 92031896 L3b LINE - chr11:92033147-92033331 chr11 92033147 92033331 L2c LINE - chr11:92033514-92033599 chr11 92033514 92033599 L2c LINE + chr11:92035188-92035267 chr11 92035188 92035267 (ATAC)n Simple_repeat + chr11:92035208-92035245 chr11 92035208 92035245 (AC)n Simple_repeat + chr11:92039871-92039965 chr11 92039871 92039965 (AT)n Simple_repeat + chr11:92040538-92040579 chr11 92040538 92040579 (ATGCAA)n Simple_repeat + chr11:92041300-92041331 chr11 92041300 92041331 (GT)n Simple_repeat + chr11:92042550-92042585 chr11 92042550 92042585 (CA)n Simple_repeat + chr11:92043693-92043800 chr11 92043693 92043800 L1PB4 LINE - chr11:92043800-92043873 chr11 92043800 92043873 (TA)n Simple_repeat + chr11:92045298-92045391 chr11 92045298 92045391 MER5B DNA - chr11:92046086-92046114 chr11 92046086 92046114 (AAAAC)n Simple_repeat + chr11:92046714-92047023 chr11 92046714 92047023 AluSg SINE - chr11:92048602-92048646 chr11 92048602 92048646 (GT)n Simple_repeat + chr11:92048646-92048678 chr11 92048646 92048678 (AT)n Simple_repeat + chr11:92048678-92048721 chr11 92048678 92048721 (AG)n Simple_repeat + chr11:92048721-92048984 chr11 92048721 92048984 AluSz SINE - chr11:92050283-92050328 chr11 92050283 92050328 (GAAT)n Simple_repeat + chr11:92052240-92052266 chr11 92052240 92052266 (AAC)n Simple_repeat + chr11:92052746-92052820 chr11 92052746 92052820 L2c LINE - chr11:92053003-92053222 chr11 92053003 92053222 MER103C DNA + chr11:92053303-92053380 chr11 92053303 92053380 MADE1 DNA - chr11:92056368-92056429 chr11 92056368 92056429 (AT)n Simple_repeat + chr11:92056429-92056717 chr11 92056429 92056717 AluJb SINE - chr11:92058575-92058607 chr11 92058575 92058607 (T)n Simple_repeat + chr11:92058804-92059095 chr11 92058804 92059095 AluSc SINE - chr11:92059274-92059407 chr11 92059274 92059407 MIRb SINE + chr11:92060862-92060974 chr11 92060862 92060974 MIRc SINE + chr11:92061656-92061798 chr11 92061656 92061798 MIRc SINE - chr11:92063301-92063537 chr11 92063301 92063537 MamTip1b DNA - chr11:92063563-92063624 chr11 92063563 92063624 MIR3 SINE + chr11:92063689-92063798 chr11 92063689 92063798 MIRc SINE - chr11:92064441-92064465 chr11 92064441 92064465 (T)n Simple_repeat + chr11:92065616-92065815 chr11 92065616 92065815 MER107 DNA - chr11:92068378-92068403 chr11 92068378 92068403 (A)n Simple_repeat + chr11:92068766-92068865 chr11 92068766 92068865 L1MB2 LINE - chr11:92068946-92068999 chr11 92068946 92068999 A-rich Low_complexity + chr11:92072295-92072486 chr11 92072295 92072486 MER20 DNA - chr11:92073893-92073949 chr11 92073893 92073949 MamSINE1 SINE - chr11:92074524-92074578 chr11 92074524 92074578 MamSINE1 SINE - chr11:92075877-92075901 chr11 92075877 92075901 (T)n Simple_repeat + chr11:92078134-92078265 chr11 92078134 92078265 MER103C DNA - chr11:92078591-92078766 chr11 92078591 92078766 MER5A DNA + chr11:92078875-92079092 chr11 92078875 92079092 MIR3 SINE + chr11:92079770-92079984 chr11 92079770 92079984 MIRb SINE - chr11:92080135-92080367 chr11 92080135 92080367 MIR SINE - chr11:92081868-92081982 chr11 92081868 92081982 MIR3 SINE + chr11:92082079-92082151 chr11 92082079 92082151 L2b LINE - chr11:92083145-92083165 chr11 92083145 92083165 (A)n Simple_repeat + chr11:92083725-92083959 chr11 92083725 92083959 MIRb SINE + chr11:92084636-92085019 chr11 92084636 92085019 L1ME4a LINE - chr1:193224210-193224260 chr1 193224210 193224260 (T)n Simple_repeat + chr11:93916721-93916793 chr11 93916721 93916793 Charlie4z DNA - chr11:93917462-93917547 chr11 93917462 93917547 L2a LINE + chr11:94148992-94149274 chr11 94148992 94149274 AluSx1 SINE - chr11:94383373-94390701 chr11 94383373 94390701 MER51B LTR + chr11:94801093-94801127 chr11 94801093 94801127 (CTCGGT)n Simple_repeat + chr11:94803249-94803561 chr11 94803249 94803561 AluSp SINE + chr11:94803732-94803771 chr11 94803732 94803771 tRNA-Ile-ATT tRNA - chr11:94803779-94804128 chr11 94803779 94804128 L2 LINE - chr1:19539620-19539784 chr1 19539620 19539784 L1MC4 LINE + chr11:9784968-9784997 chr11 9784968 9784997 (TAGAT)n Simple_repeat + chr1:200380598-200381432 chr1 200380598 200381432 MER21B LTR + chr1:200381441-200381471 chr1 200381441 200381471 (T)n Simple_repeat + chr1:200382781-200383239 chr1 200382781 200383239 L1MC3 LINE - chr1:200382848-200383151 chr1 200382848 200383151 AluSq SINE + chr1:200383893-200384197 chr1 200383893 200384197 AluJr SINE + chr1:200384197-200384255 chr1 200384197 200384255 X6b_DNA DNA - chr1:200385597-200385827 chr1 200385597 200385827 MIRc SINE - chr1:200385849-200386120 chr1 200385849 200386120 AluY SINE - chr1:200386562-200386869 chr1 200386562 200386869 AluSc8 SINE - chr1:200386886-200387318 chr1 200386886 200387318 L1ME3G LINE + chr1:200387342-200387649 chr1 200387342 200387649 AluSq SINE + chr1:200387920-200388086 chr1 200387920 200388086 FAM SINE - chr1:200388192-200388339 chr1 200388192 200388339 (TA)n Simple_repeat + chr1:200388386-200388676 chr1 200388386 200388676 AluSp SINE - chr1:200388686-200388998 chr1 200388686 200388998 AluSz SINE - chr1:200389069-200392932 chr1 200389069 200392932 L4_C_Mam LINE - chr1:200389207-200389505 chr1 200389207 200389505 AluJb SINE - chr1:200389554-200390099 chr1 200389554 200390099 MIRb SINE + chr1:200389597-200389894 chr1 200389597 200389894 AluSz SINE + chr1:200390189-200391877 chr1 200390189 200391877 L2c LINE - chr1:200390408-200390456 chr1 200390408 200390456 (TTTTG)n Simple_repeat + chr1:200390475-200390709 chr1 200390475 200390709 AluSx1 SINE - chr1:200391008-200391262 chr1 200391008 200391262 L1PA3 LINE - chr1:200391262-200391276 chr1 200391262 200391276 (T)n Simple_repeat + chr1:200391877-200392071 chr1 200391877 200392071 MIR SINE + chr1:200392160-200392265 chr1 200392160 200392265 L2c LINE - chr1:200392271-200392489 chr1 200392271 200392489 MIR SINE - chr1:200392932-200393099 chr1 200392932 200393099 AluSg4 SINE - chr1:200393228-200393291 chr1 200393228 200393291 MER5A DNA + chr1:200393327-200393580 chr1 200393327 200393580 AluJr SINE - chr1:200393607-200394158 chr1 200393607 200394158 AluSx SINE + chr1:200393724-200394001 chr1 200393724 200394001 AluSg4 SINE + chr1:200394174-200394304 chr1 200394174 200394304 FLAM_A SINE + chr1:200394511-200394685 chr1 200394511 200394685 FAM SINE - chr1:200394855-200394933 chr1 200394855 200394933 MLT1K LTR - chr1:200394973-200395268 chr1 200394973 200395268 AluSz6 SINE - chr1:200395465-200395564 chr1 200395465 200395564 MLT1K LTR - chr1:200395709-200395759 chr1 200395709 200395759 L2d2 LINE - chr1:200395809-200396013 chr1 200395809 200396013 AluSx3 SINE + chr1:200396029-200396302 chr1 200396029 200396302 L1ME4a LINE + chr1:200396821-200396975 chr1 200396821 200396975 MamRTE1 LINE - chr1:200397035-200397342 chr1 200397035 200397342 AluJo SINE + chr1:200398311-200398618 chr1 200398311 200398618 AluJr SINE + chr1:200399562-200399733 chr1 200399562 200399733 L4_C_Mam LINE + chr1:200399748-200400045 chr1 200399748 200400045 AluSx SINE - chr1:200400126-200400437 chr1 200400126 200400437 AluSz SINE - chr1:200400556-200400836 chr1 200400556 200400836 AluSx SINE - chr1:200401130-200401412 chr1 200401130 200401412 AluJo SINE + chr1:200401414-200401712 chr1 200401414 200401712 AluJb SINE + chr1:200402312-200402344 chr1 200402312 200402344 (TAATAT)n Simple_repeat + chr1:200402500-200402548 chr1 200402500 200402548 L1M5 LINE - chr1:200402550-200402862 chr1 200402550 200402862 AluJr SINE + chr1:200403435-200403570 chr1 200403435 200403570 MIRc SINE - chr1:200403651-200403960 chr1 200403651 200403960 AluSx1 SINE + chr1:200404559-200404720 chr1 200404559 200404720 L2b LINE - chr1:200404968-200405047 chr1 200404968 200405047 L2c LINE + chr1:200405058-200405104 chr1 200405058 200405104 (GAAT)n Simple_repeat + chr1:200405230-200405525 chr1 200405230 200405525 AluJb SINE + chr1:200405798-200405926 chr1 200405798 200405926 FRAM SINE + chr1:200406418-200406522 chr1 200406418 200406522 L1PA13 LINE + chr1:200406545-200406565 chr1 200406545 200406565 (A)n Simple_repeat + chr1:200407539-200407573 chr1 200407539 200407573 (AT)n Simple_repeat + chr1:200407732-200408042 chr1 200407732 200408042 AluSx1 SINE + chr1:200408644-200408705 chr1 200408644 200408705 L2b LINE + chr1:200408903-200408964 chr1 200408903 200408964 L2d LINE - chr1:200409500-200409812 chr1 200409500 200409812 AluSz SINE + chr1:200409812-200409838 chr1 200409812 200409838 (AGTA)n Simple_repeat + chr1:200410034-200410200 chr1 200410034 200410200 L1M2 LINE + chr1:200410304-200410916 chr1 200410304 200410916 L2a LINE + chr1:200411281-200411452 chr1 200411281 200411452 MIR3 SINE - chr1:200412154-200412467 chr1 200412154 200412467 AluSx SINE - chr1:200412618-200412906 chr1 200412618 200412906 AluJb SINE - chr1:200413717-200413896 chr1 200413717 200413896 FAM SINE - chr1:200413938-200414247 chr1 200413938 200414247 AluSx1 SINE - chr1:200414818-200415129 chr1 200414818 200415129 AluSz SINE - chr1:200415590-200415650 chr1 200415590 200415650 (CTCA)n Simple_repeat + chr1:200415828-200416165 chr1 200415828 200416165 MER1B DNA - chr1:200416537-200416592 chr1 200416537 200416592 (TGAG)n Simple_repeat + chr1:200416612-200416749 chr1 200416612 200416749 MamTip2 DNA + chr1:200416786-200416917 chr1 200416786 200416917 MER5A1 DNA + chr1:200417920-200418218 chr1 200417920 200418218 AluSx1 SINE - chr1:200418266-200418553 chr1 200418266 200418553 L1ME4a LINE + chr1:200418599-200418635 chr1 200418599 200418635 (T)n Simple_repeat + chr1:200418817-200418925 chr1 200418817 200418925 MER5A DNA - chr1:200419245-200419386 chr1 200419245 200419386 MIRb SINE + chr1:200419623-200419791 chr1 200419623 200419791 Eulor2C DNA? + chr1:200419876-200419908 chr1 200419876 200419908 (CACA)n Simple_repeat + chr1:200420277-200420430 chr1 200420277 200420430 L2c LINE - chr1:200420435-200420495 chr1 200420435 200420495 L2b LINE - chr1:200420713-200420741 chr1 200420713 200420741 (TTTA)n Simple_repeat + chr1:200420747-200421076 chr1 200420747 200421076 L1PA6 LINE - chr1:200421638-200421930 chr1 200421638 200421930 AluSx1 SINE + chr1:200422783-200422878 chr1 200422783 200422878 AluJb SINE - chr1:200422943-200422968 chr1 200422943 200422968 (A)n Simple_repeat + chr1:200423566-200423677 chr1 200423566 200423677 FLAM_C SINE - chr1:200424412-200424689 chr1 200424412 200424689 AluSx SINE - chr1:200425125-200425427 chr1 200425125 200425427 AluSx1 SINE - chr1:200426304-200426397 chr1 200426304 200426397 MIRb SINE - chr1:200426466-200426755 chr1 200426466 200426755 AluSz SINE - chr1:200427123-200427230 chr1 200427123 200427230 AluSc8 SINE + chr1:200427528-200427818 chr1 200427528 200427818 AluJb SINE - chr1:200427991-200428411 chr1 200427991 200428411 MSTD LTR + chr1:200429010-200429324 chr1 200429010 200429324 AluSx3 SINE - chr1:200429334-200429646 chr1 200429334 200429646 AluJb SINE - chr1:200429732-200430238 chr1 200429732 200430238 L5 LINE - chr1:200429791-200430096 chr1 200429791 200430096 AluSx1 SINE - chr1:200430336-200430374 chr1 200430336 200430374 L4_A_Mam LINE + chr1:200430374-200430552 chr1 200430374 200430552 L2d LINE - chr1:200430559-200430638 chr1 200430559 200430638 X30_DNA DNA + chr1:200430587-200430689 chr1 200430587 200430689 X30_DNA DNA - chr1:200431008-200431044 chr1 200431008 200431044 L2a LINE + chr1:200431134-200431426 chr1 200431134 200431426 AluSx SINE + chr1:200431490-200431646 chr1 200431490 200431646 MIRc SINE - chr1:200431800-200431835 chr1 200431800 200431835 (TATC)n Simple_repeat + chr1:200433925-200434136 chr1 200433925 200434136 L2d LINE - chr1:200435531-200435659 chr1 200435531 200435659 AluJr SINE + chr1:200436197-200436263 chr1 200436197 200436263 L2d2 LINE - chr1:200439219-200439640 chr1 200439219 200439640 L1MA5A LINE + chr1:200439640-200439927 chr1 200439640 200439927 AluSq SINE - chr1:200440036-200440335 chr1 200440036 200440335 AluJb SINE + chr1:200440504-200440815 chr1 200440504 200440815 AluJb SINE - chr1:200441466-200441556 chr1 200441466 200441556 MIR SINE + chr1:200442204-200442505 chr1 200442204 200442505 AluSc SINE + chr1:200708065-200708093 chr1 200708065 200708093 (GCG)n Simple_repeat + chr1:200708306-200708313 chr1 200708306 200708313 (GGCGAC)n Simple_repeat + chr1:200993131-200993246 chr1 200993131 200993246 MIR3 SINE - chr1:200993772-200993816 chr1 200993772 200993816 (CCCTGCC)n Simple_repeat + chr1:200994463-200994568 chr1 200994463 200994568 MIRb SINE - chr1:200995118-200995173 chr1 200995118 200995173 L3b LINE + chr1:200996383-200996563 chr1 200996383 200996563 MIR3 SINE - chr1:200997689-200997969 chr1 200997689 200997969 MLT1I LTR + chr1:202695985-202696073 chr1 202695985 202696073 MIRb SINE + chr1:202821290-202821446 chr1 202821290 202821446 FAM SINE + chr1:202822617-202822929 chr1 202822617 202822929 AluSx1 SINE + chr1:202823243-202823266 chr1 202823243 202823266 (A)n Simple_repeat + chr1:202823285-202823414 chr1 202823285 202823414 L3 LINE - chr1:202824321-202824591 chr1 202824321 202824591 AluJb SINE + chr1:202825425-202825566 chr1 202825425 202825566 L1ME2 LINE - chr1:202825602-202825865 chr1 202825602 202825865 AluJb SINE + chr1:202826078-202826138 chr1 202826078 202826138 MER5A DNA - chr1:202827054-202827192 chr1 202827054 202827192 AluSp SINE - chr1:202827707-202827748 chr1 202827707 202827748 (TTTCTGC)n Simple_repeat + chr1:202829496-202829811 chr1 202829496 202829811 AluSp SINE - chr1:203823607-203823631 chr1 203823607 203823631 (ATAA)n Simple_repeat + chr1:204042341-204042375 chr1 204042341 204042375 (GAGCTCA)n Simple_repeat + chr1:204475654-204475727 chr1 204475654 204475727 tRNA-Lys-AAA tRNA + chr1:205420949-205421011 chr1 205420949 205421011 MIR SINE - chr1:205421529-205421783 chr1 205421529 205421783 L3 LINE + chr1:205421658-205421695 chr1 205421658 205421695 MIRb SINE + chr1:205423240-205423401 chr1 205423240 205423401 L2b LINE - chr1:205423667-205423710 chr1 205423667 205423710 hAT-4b_Ther DNA - chr1:205425063-205425141 chr1 205425063 205425141 (CT)n Simple_repeat + chr1:205680769-205680959 chr1 205680769 205680959 MIRc SINE + chr12:100557009-100557035 chr12 100557009 100557035 (T)n Simple_repeat + chr12:100559329-100559439 chr12 100559329 100559439 MIRb SINE - chr12:100566149-100566167 chr12 100566149 100566167 (A)n Simple_repeat + chr12:100567291-100567343 chr12 100567291 100567343 (TG)n Simple_repeat + chr12:100571047-100571082 chr12 100571047 100571082 A-rich Low_complexity + chr12:100584884-100584928 chr12 100584884 100584928 (AC)n Simple_repeat + chr12:102598770-102598798 chr12 102598770 102598798 (GTTT)n Simple_repeat + chr1:210337973-210338071 chr1 210337973 210338071 UCON38 DNA - chr1:210338341-210338569 chr1 210338341 210338569 MIRb SINE - chr1:210339221-210339524 chr1 210339221 210339524 L2c LINE - chr1:210341409-210341436 chr1 210341409 210341436 (GGT)n Simple_repeat + chr1:210343258-210343339 chr1 210343258 210343339 (CCTT)n Simple_repeat + chr12:104744204-104744264 chr12 104744204 104744264 L2a LINE + chr12:105395626-105395678 chr12 105395626 105395678 (TTTTC)n Simple_repeat + chr12:105398509-105401334 chr12 105398509 105401334 Tigger2 DNA - chr12:105400552-105400649 chr12 105400552 105400649 L1PA15 LINE - chr12:105409244-105409478 chr12 105409244 105409478 Tigger7 DNA + chr12:105409477-105409560 chr12 105409477 105409560 Tigger7 DNA + chr12:10741862-10741895 chr12 10741862 10741895 (TTTTCT)n Simple_repeat + chr12:11037196-11037223 chr12 11037196 11037223 (TG)n Simple_repeat + chr12:11089832-11089859 chr12 11089832 11089859 (GT)n Simple_repeat + chr12:11092817-11092845 chr12 11092817 11092845 (CA)n Simple_repeat + chr12:11102225-11102253 chr12 11102225 11102253 (TTTAT)n Simple_repeat + chr12:11113871-11113958 chr12 11113871 11113958 L2 LINE - chr12:11116832-11116863 chr12 11116832 11116863 (CACATA)n Simple_repeat + chr12:11118597-11118642 chr12 11118597 11118642 (ACACAT)n Simple_repeat + chr12:11120223-11120252 chr12 11120223 11120252 (TTTTG)n Simple_repeat + chr12:11120856-11120893 chr12 11120856 11120893 A-rich Low_complexity + chr12:11125733-11125780 chr12 11125733 11125780 (ATTA)n Simple_repeat + chr12:11133140-11133188 chr12 11133140 11133188 A-rich Low_complexity + chr12:111374235-111374584 chr12 111374235 111374584 THE1D LTR + chr12:111396326-111396387 chr12 111396326 111396387 LTR85a LTR - chr12:11140141-11140166 chr12 11140141 11140166 (AG)n Simple_repeat + chr12:11142936-11142971 chr12 11142936 11142971 (AGTGATG)n Simple_repeat + chr12:11144170-11144215 chr12 11144170 11144215 (AT)n Simple_repeat + chr12:11147794-11147947 chr12 11147794 11147947 L2a LINE - chr12:11151128-11151152 chr12 11151128 11151152 (AC)n Simple_repeat + chr12:11154805-11154845 chr12 11154805 11154845 (ATG)n Simple_repeat + chr12:11162881-11162918 chr12 11162881 11162918 (ATG)n Simple_repeat + chr12:11164860-11165015 chr12 11164860 11165015 MIR SINE + chr12:11166705-11166731 chr12 11166705 11166731 (AATA)n Simple_repeat + chr12:11166779-11166965 chr12 11166779 11166965 L2 LINE - chr12:11170070-11170097 chr12 11170070 11170097 (AATT)n Simple_repeat + chr12:11172827-11172961 chr12 11172827 11172961 L2a LINE - chr12:11173984-11174026 chr12 11173984 11174026 (ATACT)n Simple_repeat + chr12:11178635-11178926 chr12 11178635 11178926 AluJr SINE - chr12:11181578-11181734 chr12 11181578 11181734 L2a LINE - chr12:111843652-111843705 chr12 111843652 111843705 (GCCCC)n Simple_repeat + chr12:11185965-11186004 chr12 11185965 11186004 (AAAAC)n Simple_repeat + chr12:11187489-11187522 chr12 11187489 11187522 (AAT)n Simple_repeat + chr12:11189412-11189454 chr12 11189412 11189454 (ATG)n Simple_repeat + chr12:11192400-11192445 chr12 11192400 11192445 (CATA)n Simple_repeat + chr12:11192858-11192988 chr12 11192858 11192988 MIR SINE + chr12:11199581-11199650 chr12 11199581 11199650 MLT1G LTR + chr12:11200711-11200741 chr12 11200711 11200741 (CA)n Simple_repeat + chr12:11200760-11200794 chr12 11200760 11200794 (ATAG)n Simple_repeat + chr12:11205505-11205514 chr12 11205505 11205514 (TGTTTT)n Simple_repeat + chr12:11205514-11205541 chr12 11205514 11205541 (T)n Simple_repeat + chr12:11206281-11206306 chr12 11206281 11206306 (GAT)n Simple_repeat + chr12:11208600-11208634 chr12 11208600 11208634 (AC)n Simple_repeat + chr12:11208999-11209146 chr12 11208999 11209146 MIR SINE + chr12:11212462-11212601 chr12 11212462 11212601 L2a LINE - chr12:11213600-11213645 chr12 11213600 11213645 (AATTATA)n Simple_repeat + chr12:11215533-11215568 chr12 11215533 11215568 (AC)n Simple_repeat + chr12:11217642-11217666 chr12 11217642 11217666 (AAT)n Simple_repeat + chr12:11221143-11221259 chr12 11221143 11221259 L1M4 LINE + chr12:11223442-11223533 chr12 11223442 11223533 FRAM SINE - chr12:11224658-11224885 chr12 11224658 11224885 AluJb SINE - chr12:112277523-112277914 chr12 112277523 112277914 MLT1J2 LTR - chr12:112277915-112279301 chr12 112277915 112279301 L2b LINE + chr12:112278167-112278449 chr12 112278167 112278449 AluJb SINE + chr12:112278742-112278877 chr12 112278742 112278877 AluSz SINE - chr12:112279375-112279535 chr12 112279375 112279535 MIRb SINE + chr12:11228008-11228165 chr12 11228008 11228165 LTR38-int LTR - chr12:11228486-11228654 chr12 11228486 11228654 L2a LINE - chr12:11228657-11228694 chr12 11228657 11228694 (AT)n Simple_repeat + chr12:11229624-11229681 chr12 11229624 11229681 (AATAA)n Simple_repeat + chr12:112331510-112331819 chr12 112331510 112331819 AluSq SINE - chr12:112331843-112332135 chr12 112331843 112332135 AluSq2 SINE - chr12:112332570-112332596 chr12 112332570 112332596 (TG)n Simple_repeat + chr12:112333353-112333632 chr12 112333353 112333632 AluSx4 SINE - chr12:112334947-112335062 chr12 112334947 112335062 FLAM_A SINE - chr12:11234779-11234798 chr12 11234779 11234798 (GAT)n Simple_repeat + chr12:11234909-11235203 chr12 11234909 11235203 AluSq2 SINE - chr12:11237348-11237402 chr12 11237348 11237402 (ATTT)n Simple_repeat + chr12:11237718-11237737 chr12 11237718 11237737 (ATTT)n Simple_repeat + chr12:11239082-11239230 chr12 11239082 11239230 MIR SINE + chr12:11239701-11239992 chr12 11239701 11239992 AluJr SINE - chr12:11243685-11243714 chr12 11243685 11243714 (CA)n Simple_repeat + chr12:11243714-11243742 chr12 11243714 11243742 (AT)n Simple_repeat + chr12:11250740-11250794 chr12 11250740 11250794 LTR12F LTR - chr12:11252056-11252308 chr12 11252056 11252308 AluSc SINE + chr12:11253805-11254105 chr12 11253805 11254105 AluJb SINE + chr12:11256690-11256778 chr12 11256690 11256778 Charlie7 DNA - chr12:11256780-11256802 chr12 11256780 11256802 (A)n Simple_repeat + chr12:11258866-11258907 chr12 11258866 11258907 (ACAC)n Simple_repeat + chr12:11259303-11259478 chr12 11259303 11259478 MIR SINE + chr12:11259628-11259898 chr12 11259628 11259898 AluJr SINE - chr12:11259901-11260068 chr12 11259901 11260068 L1MEg2 LINE + chr12:11260080-11260423 chr12 11260080 11260423 L1M4 LINE + chr12:11269011-11269046 chr12 11269011 11269046 (AAAAC)n Simple_repeat + chr12:11272892-11273343 chr12 11272892 11273343 L1MEb LINE - chr12:11273571-11273645 chr12 11273571 11273645 MLT1F1 LTR + chr12:11274665-11274699 chr12 11274665 11274699 (CATACA)n Simple_repeat + chr12:11277447-11277740 chr12 11277447 11277740 AluSq2 SINE - chr12:11280204-11280238 chr12 11280204 11280238 (AC)n Simple_repeat + chr12:11280836-11280871 chr12 11280836 11280871 (TTTA)n Simple_repeat + chr12:11281525-11281813 chr12 11281525 11281813 AluJr SINE - chr12:11284483-11284640 chr12 11284483 11284640 L2a LINE - chr12:11287502-11287521 chr12 11287502 11287521 (AC)n Simple_repeat + chr12:11289221-11289317 chr12 11289221 11289317 L1MEg LINE - chr12:11289346-11289488 chr12 11289346 11289488 AluJr4 SINE + chr12:11290419-11290460 chr12 11290419 11290460 (TAATGA)n Simple_repeat + chr12:11291195-11291234 chr12 11291195 11291234 A-rich Low_complexity + chr12:11293639-11293673 chr12 11293639 11293673 (ACACAC)n Simple_repeat + chr12:11294404-11294689 chr12 11294404 11294689 AluJr SINE - chr12:11297776-11298091 chr12 11297776 11298091 AluSz SINE - chr12:11299801-11300086 chr12 11299801 11300086 AluJb SINE - chr12:11303690-11303837 chr12 11303690 11303837 LTR16E2 LTR + chr12:11304679-11304868 chr12 11304679 11304868 L1PA4 LINE - chr12:11308162-11308456 chr12 11308162 11308456 L1ME3 LINE - chr12:11308488-11309234 chr12 11308488 11309234 L1MEd LINE - chr12:11309443-11309720 chr12 11309443 11309720 AluYm1 SINE - chr12:11310406-11310441 chr12 11310406 11310441 (ATG)n Simple_repeat + chr12:11313056-11313371 chr12 11313056 11313371 AluSx4 SINE - chr12:11315521-11316240 chr12 11315521 11316240 L1MC5a LINE + chr12:11315698-11315763 chr12 11315698 11315763 U6 snRNA + chr12:11316525-11316668 chr12 11316525 11316668 LTR33B LTR + chr12:11317359-11317890 chr12 11317359 11317890 L1ME1 LINE - chr12:11319294-11319763 chr12 11319294 11319763 MLT1D LTR - chr12:11321066-11321073 chr12 11321066 11321073 (AAAG)n Simple_repeat + chr12:11323562-11323657 chr12 11323562 11323657 MIRb SINE + chr12:11324829-11325069 chr12 11324829 11325069 HAL1ME LINE + chr12:11325212-11325530 chr12 11325212 11325530 HAL1 LINE + chr12:11326144-11326245 chr12 11326144 11326245 EUTREP16 LTR + chr12:11327364-11327516 chr12 11327364 11327516 MIRb SINE - chr12:113910281-113910313 chr12 113910281 113910313 (GCCCAG)n Simple_repeat + chr12:113917669-113917701 chr12 113917669 113917701 (TTTTG)n Simple_repeat + chr1:211582374-211582677 chr1 211582374 211582677 AluSz6 SINE + chr1:211583164-211583466 chr1 211583164 211583466 AluSg SINE + chr1:211585078-211585386 chr1 211585078 211585386 AluJb SINE - chr1:211586432-211586714 chr1 211586432 211586714 AluSz SINE + chr1:211588065-211588358 chr1 211588065 211588358 AluJr SINE + chr1:211588451-211588717 chr1 211588451 211588717 AluSq4 SINE + chr1:211590225-211590295 chr1 211590225 211590295 (CCG)n Simple_repeat + chr1:211591361-211591454 chr1 211591361 211591454 L1MA5 LINE + chr1:211591681-211591750 chr1 211591681 211591750 L1MC1 LINE + chr1:211591752-211592200 chr1 211591752 211592200 MLT2A2 LTR + chr1:211592200-211592488 chr1 211592200 211592488 L1MC1 LINE + chr1:211593035-211593206 chr1 211593035 211593206 L1PB LINE + chr1:211595554-211595852 chr1 211595554 211595852 AluJo SINE + chr1:211596840-211597128 chr1 211596840 211597128 AluSz SINE + chr1:211597133-211597424 chr1 211597133 211597424 AluSg SINE + chr1:211597496-211597793 chr1 211597496 211597793 AluJr SINE - chr1:211598895-211599191 chr1 211598895 211599191 AluSz SINE + chr1:211599684-211599976 chr1 211599684 211599976 AluJb SINE - chr1:211600327-211600603 chr1 211600327 211600603 AluJr4 SINE + chr1:211600603-211600898 chr1 211600603 211600898 AluSx SINE - chr1:211601086-211601242 chr1 211601086 211601242 AluSq2 SINE + chr1:211601388-211601769 chr1 211601388 211601769 L2c LINE - chr1:211602451-211602686 chr1 211602451 211602686 MER8 DNA + chr1:211603048-211603359 chr1 211603048 211603359 AluSz SINE + chr1:211603414-211603459 chr1 211603414 211603459 (TAA)n Simple_repeat + chr1:211603785-211604069 chr1 211603785 211604069 AluSg4 SINE - chr1:211604132-211604567 chr1 211604132 211604567 LTR37B LTR - chr1:211606110-211606419 chr1 211606110 211606419 AluSx SINE - chr1:211606428-211606735 chr1 211606428 211606735 AluSx SINE - chr1:211606928-211607005 chr1 211606928 211607005 L1PA16 LINE + chr1:211607213-211607244 chr1 211607213 211607244 (AC)n Simple_repeat + chr1:211607587-211607635 chr1 211607587 211607635 (TTAT)n Simple_repeat + chr1:211607635-211607908 chr1 211607635 211607908 AluJr SINE - chr1:211608025-211608321 chr1 211608025 211608321 AluJo SINE + chr12:117151131-117151381 chr12 117151131 117151381 L1ME3G LINE + chr12:117151381-117151574 chr12 117151381 117151574 L1ME4b LINE + chr12:117151852-117152017 chr12 117151852 117152017 MIRb SINE - chr12:117152317-117152621 chr12 117152317 117152621 AluSx SINE + chr12:117152878-117153034 chr12 117152878 117153034 AluSx SINE - chr12:117153190-117153435 chr12 117153190 117153435 Tigger19b DNA + chr12:117581094-117581145 chr12 117581094 117581145 OldhAT1 DNA + chr12:120556027-120556150 chr12 120556027 120556150 L1ME4b LINE - chr12:120641865-120641901 chr12 120641865 120641901 (AC)n Simple_repeat + chr12:120643471-120643501 chr12 120643471 120643501 (AATA)n Simple_repeat + chr12:120643643-120643682 chr12 120643643 120643682 (A)n Simple_repeat + chr12:120643749-120643772 chr12 120643749 120643772 (A)n Simple_repeat + chr12:120645402-120645631 chr12 120645402 120645631 MIR SINE - chr12:120645744-120645856 chr12 120645744 120645856 L1ME3G LINE + chr12:120646255-120646339 chr12 120646255 120646339 FLAM_C SINE - chr12:120647794-120647923 chr12 120647794 120647923 MIRb SINE + chr12:120729562-120729706 chr12 120729562 120729706 U4 snRNA - chr12:120730896-120731040 chr12 120730896 120731040 U4 snRNA - chr12:122019563-122019644 chr12 122019563 122019644 MIRc SINE - chr12:122020023-122020262 chr12 122020023 122020262 MIR SINE - chr12:122020209-122020234 chr12 122020209 122020234 (T)n Simple_repeat + chr12:122020517-122020604 chr12 122020517 122020604 MIR3 SINE - chr12:122022220-122022373 chr12 122022220 122022373 MER3 DNA - chr12:122023793-122023859 chr12 122023793 122023859 L1ME4b LINE + chr12:122080603-122080656 chr12 122080603 122080656 L1MC4 LINE - chr12:122080681-122080789 chr12 122080681 122080789 AluYc SINE - chr12:122108075-122108097 chr12 122108075 122108097 (ATATAA)n Simple_repeat + chr12:125395827-125396023 chr12 125395827 125396023 AluSx1 SINE - chr12:125424192-125424264 chr12 125424192 125424264 tRNA-Asp-GAY tRNA - chr12:125534604-125534616 chr12 125534604 125534616 (AATAATT)n Simple_repeat + chr12:125808566-125808587 chr12 125808566 125808587 (AC)n Simple_repeat + chr1:213031182-213031354 chr1 213031182 213031354 MER41D LTR + chr12:133685531-133685623 chr12 133685531 133685623 MER30B DNA - chr12:133685620-133685683 chr12 133685620 133685683 MER30B DNA + chr12:133689382-133689392 chr12 133689382 133689392 (AT)n Simple_repeat + chr12:133692205-133692325 chr12 133692205 133692325 L2 LINE - chr12:133692364-133692581 chr12 133692364 133692581 Tigger4a DNA - chr12:14651785-14652079 chr12 14651785 14652079 AluSq SINE - chr12:14652607-14652771 chr12 14652607 14652771 AluSp SINE + chr12:14655719-14655751 chr12 14655719 14655751 (GT)n Simple_repeat + chr12:16056666-16056831 chr12 16056666 16056831 HAL1b LINE - chr12:16588147-16588156 chr12 16588147 16588156 (TTTAAT)n Simple_repeat + chr1:222677296-222677404 chr1 222677296 222677404 MER8 DNA - chr12:22859649-22859673 chr12 22859649 22859673 (TTC)n Simple_repeat + chr12:22864899-22864933 chr12 22864899 22864933 (CTCCTC)n Simple_repeat + chr12:22872299-22872331 chr12 22872299 22872331 (GT)n Simple_repeat + chr12:22886452-22886489 chr12 22886452 22886489 (ACAC)n Simple_repeat + chr1:222989414-222989450 chr1 222989414 222989450 (AT)n Simple_repeat + chr1:222989575-222989620 chr1 222989575 222989620 (TATT)n Simple_repeat + chr1:222991412-222991445 chr1 222991412 222991445 (TTTATT)n Simple_repeat + chr1:222994026-222994180 chr1 222994026 222994180 MIRb SINE + chr1:222994280-222994319 chr1 222994280 222994319 (TTTTA)n Simple_repeat + chr1:222998645-222998725 chr1 222998645 222998725 L1MA8 LINE + chr1:223001428-223001580 chr1 223001428 223001580 MIRb SINE - chr1:223001584-223001758 chr1 223001584 223001758 L1MEd LINE - chr1:223003110-223003149 chr1 223003110 223003149 (TATATTC)n Simple_repeat + chr1:223003650-223003730 chr1 223003650 223003730 (TTCC)n Simple_repeat + chr1:223004891-223004942 chr1 223004891 223004942 MADE1 DNA + chr1:223005307-223005671 chr1 223005307 223005671 MIR SINE + chr1:223005340-223005591 chr1 223005340 223005591 AluSz SINE + chr1:223005915-223005954 chr1 223005915 223005954 A-rich Low_complexity + chr1:223005954-223006261 chr1 223005954 223006261 AluSx3 SINE + chr1:223006261-223006319 chr1 223006261 223006319 A-rich Low_complexity + chr1:223007108-223007316 chr1 223007108 223007316 MIRc SINE + chr1:223007412-223007484 chr1 223007412 223007484 L2a LINE + chr1:223008114-223008313 chr1 223008114 223008313 MIRb SINE + chr1:223009011-223009315 chr1 223009011 223009315 AluSx SINE + chr1:223009813-223009992 chr1 223009813 223009992 MIR3 SINE + chr1:223010084-223010105 chr1 223010084 223010105 (AT)n Simple_repeat + chr1:223010104-223010124 chr1 223010104 223010124 (AC)n Simple_repeat + chr1:223010149-223010281 chr1 223010149 223010281 MIRc SINE + chr1:223010281-223010774 chr1 223010281 223010774 MLT1J LTR + chr12:23025040-23025059 chr12 23025040 23025059 (ACA)n Simple_repeat + chr12:23043344-23043370 chr12 23043344 23043370 (GTG)n Simple_repeat + chr12:23127510-23127535 chr12 23127510 23127535 (GT)n Simple_repeat + chr12:23128200-23128224 chr12 23128200 23128224 (T)n Simple_repeat + chr12:23168185-23168192 chr12 23168185 23168192 (TTTAT)n Simple_repeat + chr12:23179896-23179919 chr12 23179896 23179919 (AG)n Simple_repeat + chr12:23186454-23186475 chr12 23186454 23186475 (CT)n Simple_repeat + chr12:23187305-23187312 chr12 23187305 23187312 (CTCTTC)n Simple_repeat + chr12:23187312-23187336 chr12 23187312 23187336 (CTC)n Simple_repeat + chr12:23195040-23195067 chr12 23195040 23195067 (A)n Simple_repeat + chr1:22352437-22352593 chr1 22352437 22352593 MIRb SINE + chr1:22352758-22353067 chr1 22352758 22353067 AluSx SINE - chr1:22353239-22353545 chr1 22353239 22353545 AluSx1 SINE + chr1:22353709-22353788 chr1 22353709 22353788 HAL1ME LINE - chr1:22353815-22353900 chr1 22353815 22353900 (ATTT)n Simple_repeat + chr1:22354031-22354082 chr1 22354031 22354082 L1ME3G LINE - chr1:22354528-22354827 chr1 22354528 22354827 AluSc8 SINE + chr1:22355180-22355387 chr1 22355180 22355387 AluJb SINE - chr1:22355689-22355824 chr1 22355689 22355824 AluSq2 SINE - chr1:22355828-22355905 chr1 22355828 22355905 FAM SINE - chr1:22356090-22356385 chr1 22356090 22356385 AluSg SINE + chr1:224161771-224161791 chr1 224161771 224161791 (A)n Simple_repeat + chr1:224163562-224163682 chr1 224163562 224163682 AluJr4 SINE - chr1:22419806-22419881 chr1 22419806 22419881 MER5B DNA - chr12:26110961-26110974 chr12 26110961 26110974 (TTCT)n Simple_repeat + chr12:26110974-26111000 chr12 26110974 26111000 (T)n Simple_repeat + chr1:226261602-226261694 chr1 226261602 226261694 MIR SINE - chr12:26489900-26489927 chr12 26489900 26489927 (T)n Simple_repeat + chr12:27190672-27190759 chr12 27190672 27190759 Kanga1c DNA + chr12:27576605-27576767 chr12 27576605 27576767 MIR3 SINE + chr1:228746012-228746133 chr1 228746012 228746133 5S rRNA - chr1:228748253-228748374 chr1 228748253 228748374 5S rRNA - chr1:228759411-228759532 chr1 228759411 228759532 5S rRNA - chr1:228761653-228761774 chr1 228761653 228761774 5S rRNA - chr1:228772840-228772961 chr1 228772840 228772961 5S rRNA - chr1:228775081-228775202 chr1 228775081 228775202 5S rRNA - chr1:228777312-228777433 chr1 228777312 228777433 5S rRNA - chr1:228779553-228779674 chr1 228779553 228779674 5S rRNA - chr1:228781784-228781905 chr1 228781784 228781905 5S rRNA - chr12:2998726-2998823 chr12 2998726 2998823 MIRc SINE - chr12:30954519-30954762 chr12 30954519 30954762 MLT1H LTR + chr1:231010935-231010998 chr1 231010935 231010998 MIR SINE + chr1:23119-23371 chr1 23119 23371 MIR SINE - chr12:31220722-31220756 chr12 31220722 31220756 (AC)n Simple_repeat + chr12:31226195-31226318 chr12 31226195 31226318 MIR3 SINE - chr12:31427288-31427558 chr12 31427288 31427558 L1PA16 LINE + chr12:31427920-31428135 chr12 31427920 31428135 MIRb SINE - chr12:31428389-31429325 chr12 31428389 31429325 L1MC4 LINE + chr12:31428622-31428839 chr12 31428622 31428839 AluJr4 SINE + chr12:31429590-31430218 chr12 31429590 31430218 L2b LINE - chr12:31429781-31429991 chr12 31429781 31429991 LTR33 LTR + chr12:31432041-31432344 chr12 31432041 31432344 AluSz SINE - chr12:31432482-31432914 chr12 31432482 31432914 MLT1E1A LTR + chr12:3150833-3150871 chr12 3150833 3150871 (CCTCCCTG)n Simple_repeat + chr12:3151080-3151226 chr12 3151080 3151226 MIR SINE + chr12:3151211-3151276 chr12 3151211 3151276 L2a LINE + chr12:3152418-3152505 chr12 3152418 3152505 MIR SINE - chr12:3153455-3153475 chr12 3153455 3153475 (GT)n Simple_repeat + chr12:3154138-3154245 chr12 3154138 3154245 MIRb SINE + chr1:231660376-231660436 chr1 231660376 231660436 (TA)n Simple_repeat + chr12:32150024-32150054 chr12 32150024 32150054 (TTTTAA)n Simple_repeat + chr1:232699702-232699743 chr1 232699702 232699743 (GT)n Simple_repeat + chr1:232701908-232701939 chr1 232701908 232701939 (TTTTG)n Simple_repeat + chr1:232706691-232706709 chr1 232706691 232706709 (A)n Simple_repeat + chr1:232742402-232742410 chr1 232742402 232742410 (ATT)n Simple_repeat + chr12:32898669-32898717 chr12 32898669 32898717 MIRb SINE - chr12:34182671-34182983 chr12 34182671 34182983 AluSq10 SINE - chr12:34184714-34184925 chr12 34184714 34184925 MER30 DNA + chr12:34185652-34185782 chr12 34185652 34185782 FLAM_C SINE - chr12:34185917-34186160 chr12 34185917 34186160 MIRb SINE - chr1:235268809-235268829 chr1 235268809 235268829 (A)n Simple_repeat + chr1:235269993-235270013 chr1 235269993 235270013 (T)n Simple_repeat + chr1:235271774-235271977 chr1 235271774 235271977 MER30 DNA + chr1:23616150-23616189 chr1 23616150 23616189 GA-rich Low_complexity + chr1:23622011-23622102 chr1 23622011 23622102 Charlie19a DNA + chr1:23625194-23625247 chr1 23625194 23625247 FLAM_C SINE - chr1:23625660-23625709 chr1 23625660 23625709 A-rich Low_complexity + chr1:23803-24448 chr1 23803 24448 L2a LINE + chr1:23824-24011 chr1 23824 24011 L2b LINE + chr12:385074-385260 chr12 385074 385260 MER5A DNA - chr12:38722663-38722859 chr12 38722663 38722859 MIR SINE - chr1:23883153-23883234 chr1 23883153 23883234 Charlie24 DNA + chr1:239717752-239717780 chr1 239717752 239717780 (TG)n Simple_repeat + chr1:239720188-239720214 chr1 239720188 239720214 (TTGAA)n Simple_repeat + chr1:239733305-239733328 chr1 239733305 239733328 (AAC)n Simple_repeat + chr1:239741466-239741489 chr1 239741466 239741489 (GTCA)n Simple_repeat + chr1:239744742-239744770 chr1 239744742 239744770 G-rich Low_complexity + chr1:239749573-239749589 chr1 239749573 239749589 (TGTTTTT)n Simple_repeat + chr1:239761158-239761176 chr1 239761158 239761176 (T)n Simple_repeat + chr1:239770380-239770405 chr1 239770380 239770405 (T)n Simple_repeat + chr1:239777466-239777490 chr1 239777466 239777490 (TAA)n Simple_repeat + chr1:239781563-239781595 chr1 239781563 239781595 (T)n Simple_repeat + chr1:24023404-24023563 chr1 24023404 24023563 MIR SINE + chr1:24024007-24024285 chr1 24024007 24024285 AluSg SINE - chr1:24024557-24024661 chr1 24024557 24024661 Tigger13a DNA - chr1:24087-24201 chr1 24087 24201 MIR SINE + chr1:24088628-24088651 chr1 24088628 24088651 (T)n Simple_repeat + chr12:4135370-4135530 chr12 4135370 4135530 MIRc SINE - chr12:4140752-4140769 chr12 4140752 4140769 (T)n Simple_repeat + chr1:243242363-243242404 chr1 243242363 243242404 (A)n Simple_repeat + chr1:243242525-243242645 chr1 243242525 243242645 AluJb SINE - chr1:243242987-243243128 chr1 243242987 243243128 L1ME4b LINE + chr1:243244032-243244416 chr1 243244032 243244416 L1ME4c LINE + chr1:243244172-243244292 chr1 243244172 243244292 AluJr4 SINE - chr1:243244457-243244560 chr1 243244457 243244560 U6 snRNA - chr1:243245062-243245169 chr1 243245062 243245169 Charlie29b DNA - chr1:243258831-243258882 chr1 243258831 243258882 AluSq2 SINE - chr1:243259142-243259225 chr1 243259142 243259225 MIR1_Amn SINE - chr1:243259396-243259449 chr1 243259396 243259449 L2c LINE + chr1:243259568-243259649 chr1 243259568 243259649 MIRb SINE - chr12:4365295-4365318 chr12 4365295 4365318 (A)n Simple_repeat + chr12:44118555-44118999 chr12 44118555 44118999 MER113 DNA - chr12:44119577-44119727 chr12 44119577 44119727 MIRb SINE + chr1:244564769-244564806 chr1 244564769 244564806 (CCTTTAGTT)n Simple_repeat + chr12:4463247-4463439 chr12 4463247 4463439 MamRep137 DNA - chr12:4467453-4467480 chr12 4467453 4467480 (A)n Simple_repeat + chr1:244979312-244979477 chr1 244979312 244979477 AluSx SINE + chr1:244979736-244979941 chr1 244979736 244979941 AluSq SINE + chr1:244980604-244980906 chr1 244980604 244980906 AluSg SINE + chr1:244980938-244981366 chr1 244980938 244981366 MER51-int LTR + chr1:244987310-244987333 chr1 244987310 244987333 (GAT)n Simple_repeat + chr1:245008906-245009202 chr1 245008906 245009202 AluSq2 SINE - chr1:245009531-245009834 chr1 245009531 245009834 AluSg SINE + chr1:245014280-245014410 chr1 245014280 245014410 FLAM_C SINE - chr1:24515186-24515467 chr1 24515186 24515467 AluSx1 SINE - chr12:45570218-45570270 chr12 45570218 45570270 A-rich Low_complexity + chr12:45570790-45570857 chr12 45570790 45570857 GA-rich Low_complexity + chr12:45573516-45573550 chr12 45573516 45573550 (ATA)n Simple_repeat + chr12:45580854-45580902 chr12 45580854 45580902 HY5 scRNA - chr12:45589990-45590009 chr12 45589990 45590009 (TC)n Simple_repeat + chr12:46664709-46664923 chr12 46664709 46664923 MIR SINE - chr12:46665094-46665297 chr12 46665094 46665297 MIRb SINE - chr12:46751555-46751696 chr12 46751555 46751696 MER5A DNA + chr12:46778480-46778731 chr12 46778480 46778731 MIR SINE - chr12:46780182-46780229 chr12 46780182 46780229 MADE1 DNA + chr12:46780959-46781146 chr12 46780959 46781146 MIRc SINE + chr12:46781710-46781743 chr12 46781710 46781743 (ACCAA)n Simple_repeat + chr12:46781795-46781998 chr12 46781795 46781998 MIR SINE - chr12:46783217-46783248 chr12 46783217 46783248 (AC)n Simple_repeat + chr12:46783927-46784023 chr12 46783927 46784023 Penelope1_Vert LINE - chr12:46784226-46784430 chr12 46784226 46784430 MIR SINE + chr12:46784954-46785102 chr12 46784954 46785102 MER91A DNA - chr12:46785912-46785944 chr12 46785912 46785944 (TTGTT)n Simple_repeat + chr12:46786801-46786842 chr12 46786801 46786842 (CA)n Simple_repeat + chr12:46788519-46788580 chr12 46788519 46788580 L2a LINE + chr12:46788582-46788666 chr12 46788582 46788666 GA-rich Low_complexity + chr12:46890147-46890171 chr12 46890147 46890171 (AT)n Simple_repeat + chr12:46890171-46890199 chr12 46890171 46890199 (AG)n Simple_repeat + chr12:47026215-47026244 chr12 47026215 47026244 (AAC)n Simple_repeat + chr1:247198946-247199021 chr1 247198946 247199021 (AT)n Simple_repeat + chr1:247199043-247199624 chr1 247199043 247199624 L1M4 LINE + chr1:247199101-247199333 chr1 247199101 247199333 Tigger4a DNA - chr1:247261148-247261215 chr1 247261148 247261215 L1M4 LINE + chr1:247262655-247262942 chr1 247262655 247262942 AluSc SINE - chr1:247262951-247263181 chr1 247262951 247263181 AluSc5 SINE - chr1:247351330-247353109 chr1 247351330 247353109 L1M4 LINE + chr1:247351757-247351996 chr1 247351757 247351996 AluJr SINE + chr1:247352241-247352574 chr1 247352241 247352574 AluYk2 SINE + chr1:247352522-247352556 chr1 247352522 247352556 (AAAAT)n Simple_repeat + chr1:247356175-247356481 chr1 247356175 247356481 AluSx3 SINE + chr1:247357788-247357847 chr1 247357788 247357847 (TATGTA)n Simple_repeat + chr1:247357801-247357824 chr1 247357801 247357824 (TGTG)n Simple_repeat + chr1:247358704-247358821 chr1 247358704 247358821 AluJb SINE + chr1:247359599-247359890 chr1 247359599 247359890 AluSz6 SINE + chr1:247360582-247360686 chr1 247360582 247360686 L1PB4 LINE + chr1:247360700-247360812 chr1 247360700 247360812 L1MB2 LINE + chr1:247363839-247363992 chr1 247363839 247363992 MER5A1 DNA - chr1:247364158-247364403 chr1 247364158 247364403 L1MC4 LINE + chr1:247364403-247364703 chr1 247364403 247364703 AluSz SINE - chr1:247365332-247365355 chr1 247365332 247365355 (TTC)n Simple_repeat + chr1:247365720-247365878 chr1 247365720 247365878 MER5B DNA + chr1:247366575-247366622 chr1 247366575 247366622 L2d LINE - chr1:247367869-247367963 chr1 247367869 247367963 5S rRNA - chr1:247368659-247368917 chr1 247368659 247368917 AluSp SINE - chr1:247369023-247369312 chr1 247369023 247369312 AluJr SINE + chr1:247369312-247369394 chr1 247369312 247369394 MER67C LTR - chr1:247370144-247370429 chr1 247370144 247370429 AluYm1 SINE - chr1:247373205-247373679 chr1 247373205 247373679 MER57E3 LTR + chr1:247497015-247497175 chr1 247497015 247497175 MIRb SINE + chr1:247497176-247497449 chr1 247497176 247497449 L2a LINE - chr12:4799565-4799588 chr12 4799565 4799588 (TAA)n Simple_repeat + chr12:4799882-4799903 chr12 4799882 4799903 (TAA)n Simple_repeat + chr12:4801927-4801975 chr12 4801927 4801975 (ATAGG)n Simple_repeat + chr12:4803788-4803835 chr12 4803788 4803835 MamRTE1 LINE + chr12:49469865-49470173 chr12 49469865 49470173 AluSp SINE + chr12:49470204-49470812 chr12 49470204 49470812 AluJb SINE + chr12:49470332-49470647 chr12 49470332 49470647 AluYk3 SINE + chr12:49470816-49471110 chr12 49470816 49471110 AluSx SINE + chr12:49471110-49471350 chr12 49471110 49471350 Kanga2_a DNA + chr12:49471371-49471987 chr12 49471371 49471987 AluSg7 SINE + chr12:49471463-49471771 chr12 49471463 49471771 AluY SINE + chr12:49472196-49472399 chr12 49472196 49472399 LTR33 LTR + chr12:49472399-49472573 chr12 49472399 49472573 AluSq SINE - chr12:49472606-49472891 chr12 49472606 49472891 AluSc SINE + chr12:49474054-49474089 chr12 49474054 49474089 (TTCTA)n Simple_repeat + chr12:49474252-49474580 chr12 49474252 49474580 AluSp SINE + chr12:49475230-49475499 chr12 49475230 49475499 AluJo SINE + chr12:49475512-49475824 chr12 49475512 49475824 L2d LINE + chr12:49475615-49475657 chr12 49475615 49475657 L2b LINE + chr12:49476047-49476488 chr12 49476047 49476488 FLAM_C SINE + chr12:49476508-49476801 chr12 49476508 49476801 AluJr SINE + chr12:49476803-49477057 chr12 49476803 49477057 AluJb SINE + chr12:49477064-49477099 chr12 49477064 49477099 (T)n Simple_repeat + chr12:49477102-49477712 chr12 49477102 49477712 AluSx1 SINE + chr12:49477222-49477524 chr12 49477222 49477524 AluY SINE + chr12:49477774-49478085 chr12 49477774 49478085 AluSq2 SINE + chr12:49479443-49479963 chr12 49479443 49479963 MIR SINE + chr12:49479576-49479890 chr12 49479576 49479890 AluSq SINE + chr12:49479938-49480130 chr12 49479938 49480130 L2d LINE + chr12:49480366-49480480 chr12 49480366 49480480 UCON34 DNA + chr12:49481064-49481683 chr12 49481064 49481683 MamTip2b DNA + chr12:49481215-49481494 chr12 49481215 49481494 AluJo SINE + chr12:49489396-49489444 chr12 49489396 49489444 L2c LINE + chr12:49489702-49489994 chr12 49489702 49489994 AluJr SINE + chr12:49489995-49490307 chr12 49489995 49490307 AluSz6 SINE + chr12:49505251-49505341 chr12 49505251 49505341 AluJr SINE - chr12:49505714-49505775 chr12 49505714 49505775 (TG)n Simple_repeat + chr12:49506151-49506461 chr12 49506151 49506461 AluY SINE + chr12:49506472-49507271 chr12 49506472 49507271 AluSq2 SINE + chr12:49507281-49507368 chr12 49507281 49507368 L2d2 LINE + chr12:49507803-49508108 chr12 49507803 49508108 AluSp SINE + chr12:49508108-49508335 chr12 49508108 49508335 AluJr4 SINE + chr12:49508338-49508362 chr12 49508338 49508362 (AAAG)n Simple_repeat + chr12:49509423-49510456 chr12 49509423 49510456 LTR5A LTR + chr12:49510481-49510802 chr12 49510481 49510802 MER1B DNA + chr12:49511089-49511402 chr12 49511089 49511402 AluSx SINE + chr12:49511436-49511487 chr12 49511436 49511487 OldhAT1 DNA + chr12:49512487-49512514 chr12 49512487 49512514 A-rich Low_complexity + chr12:49512863-49513150 chr12 49512863 49513150 AluYk2 SINE + chr12:49513150-49513187 chr12 49513150 49513187 (AAAAC)n Simple_repeat + chr12:49513187-49513364 chr12 49513187 49513364 AluSp SINE + chr12:49513364-49513618 chr12 49513364 49513618 AluJr SINE + chr12:49515555-49515847 chr12 49515555 49515847 AluYk3 SINE + chr12:49515858-49516170 chr12 49515858 49516170 AluSx1 SINE + chr12:49516308-49516606 chr12 49516308 49516606 AluY SINE + chr12:49516874-49517165 chr12 49516874 49517165 AluYk2 SINE + chr12:49517172-49517482 chr12 49517172 49517482 AluYk3 SINE + chr12:49518023-49518317 chr12 49518023 49518317 AluSz SINE + chr12:49518918-49519219 chr12 49518918 49519219 AluSg SINE + chr12:49519601-49519798 chr12 49519601 49519798 AluJb SINE - chr12:49519802-49519868 chr12 49519802 49519868 MER2B DNA - chr12:49521003-49521172 chr12 49521003 49521172 AluJb SINE - chr12:49525446-49525728 chr12 49525446 49525728 hAT-1_Mam DNA + chr12:49526638-49526730 chr12 49526638 49526730 HY4 scRNA - chr12:49527290-49528945 chr12 49527290 49528945 MER41D LTR - chr12:49527478-49527775 chr12 49527478 49527775 AluSq2 SINE - chr12:49527845-49527918 chr12 49527845 49527918 HERVK14-int LTR - chr12:49527955-49528260 chr12 49527955 49528260 AluY SINE + chr12:49528319-49528636 chr12 49528319 49528636 AluSp SINE - chr12:49528639-49528888 chr12 49528639 49528888 AluSc SINE - chr12:49528953-49529037 chr12 49528953 49529037 (AT)n Simple_repeat + chr12:49529045-49529174 chr12 49529045 49529174 FLAM_C SINE - chr12:49529253-49529564 chr12 49529253 49529564 AluSz6 SINE - chr12:49529635-49529942 chr12 49529635 49529942 AluY SINE - chr12:49529949-49530625 chr12 49529949 49530625 AluSg SINE - chr12:49530189-49530485 chr12 49530189 49530485 AluSp SINE - chr12:49530629-49530935 chr12 49530629 49530935 AluSz SINE - chr12:49530957-49530987 chr12 49530957 49530987 (AC)n Simple_repeat + chr12:49531047-49531340 chr12 49531047 49531340 AluJb SINE - chr12:49531739-49532051 chr12 49531739 49532051 AluSz6 SINE + chr12:49532079-49532170 chr12 49532079 49532170 MIRb SINE + chr12:49532382-49532737 chr12 49532382 49532737 MLT1L LTR + chr12:49532850-49532903 chr12 49532850 49532903 (ATTA)n Simple_repeat + chr12:49532945-49533014 chr12 49532945 49533014 L2a LINE + chr12:49533095-49533117 chr12 49533095 49533117 (TATC)n Simple_repeat + chr12:49533117-49533411 chr12 49533117 49533411 AluSz SINE - chr12:49533412-49535159 chr12 49533412 49535159 L2 LINE - chr12:49533698-49534007 chr12 49533698 49534007 AluSg4 SINE - chr12:49534124-49534408 chr12 49534124 49534408 AluSp SINE + chr12:49534410-49534713 chr12 49534410 49534713 AluSc8 SINE + chr12:49534734-49535004 chr12 49534734 49535004 AluSx1 SINE + chr12:49535186-49542100 chr12 49535186 49542100 L2a LINE - chr12:49535279-49538357 chr12 49535279 49538357 L1MCa LINE - chr12:49535494-49535797 chr12 49535494 49535797 AluSx3 SINE - chr12:49535843-49536150 chr12 49535843 49536150 AluJr SINE - chr12:49536468-49536636 chr12 49536468 49536636 AluSx SINE + chr12:49536728-49537012 chr12 49536728 49537012 AluSc8 SINE - chr12:49537188-49537494 chr12 49537188 49537494 AluSz SINE - chr12:49537503-49537835 chr12 49537503 49537835 AluJr SINE - chr12:49537843-49538143 chr12 49537843 49538143 AluY SINE - chr12:49538198-49538245 chr12 49538198 49538245 MER66C LTR + chr12:49538737-49538764 chr12 49538737 49538764 (TTGTT)n Simple_repeat + chr12:49538764-49539053 chr12 49538764 49539053 AluSc8 SINE - chr12:49541221-49541647 chr12 49541221 49541647 MLT1J LTR + chr12:49541409-49541439 chr12 49541409 49541439 (T)n Simple_repeat + chr12:49541664-49541703 chr12 49541664 49541703 (TTTGTG)n Simple_repeat + chr12:49542190-49542475 chr12 49542190 49542475 AluY SINE + chr12:49542475-49542507 chr12 49542475 49542507 (AAAT)n Simple_repeat + chr12:49542531-49542838 chr12 49542531 49542838 AluSx3 SINE + chr12:49543499-49544185 chr12 49543499 49544185 Tigger1 DNA + chr12:49543641-49543937 chr12 49543641 49543937 AluSx SINE + chr12:49544180-49545709 chr12 49544180 49545709 Tigger1 DNA + chr12:49544307-49544608 chr12 49544307 49544608 AluSx SINE + chr12:49544942-49545237 chr12 49544942 49545237 AluJr SINE + chr12:49545718-49546009 chr12 49545718 49546009 AluSx SINE - chr12:49546014-49546265 chr12 49546014 49546265 Tigger1 DNA + chr12:49546266-49546578 chr12 49546266 49546578 AluSq2 SINE + chr12:49546589-49546772 chr12 49546589 49546772 AluSp SINE + chr12:49546772-49546920 chr12 49546772 49546920 Tigger1 DNA + chr12:49546922-49546956 chr12 49546922 49546956 (TTGT)n Simple_repeat + chr12:49547090-49547264 chr12 49547090 49547264 AluSc SINE + chr12:49547396-49547558 chr12 49547396 49547558 AluJb SINE + chr12:49547608-49547908 chr12 49547608 49547908 AluSx SINE - chr12:49547951-49547966 chr12 49547951 49547966 (CCTT)n Simple_repeat + chr12:49547966-49547999 chr12 49547966 49547999 (TCTTT)n Simple_repeat + chr12:49548029-49548313 chr12 49548029 49548313 AluJr SINE - chr12:49548452-49549296 chr12 49548452 49549296 L1MB7 LINE - chr12:49548507-49548804 chr12 49548507 49548804 AluSg SINE + chr12:49548839-49548862 chr12 49548839 49548862 (T)n Simple_repeat + chr12:49548894-49549206 chr12 49548894 49549206 AluSx SINE - chr12:49549297-49549559 chr12 49549297 49549559 AluSz6 SINE - chr12:49549599-49550483 chr12 49549599 49550483 MER21C LTR + chr12:49549755-49550051 chr12 49549755 49550051 AluSq10 SINE + chr12:49550498-49554394 chr12 49550498 49554394 LTR62 LTR + chr12:49550566-49550870 chr12 49550566 49550870 AluSg SINE - chr12:49550871-49551170 chr12 49550871 49551170 AluSq2 SINE - chr12:49551171-49551492 chr12 49551171 49551492 AluSq2 SINE - chr12:49551653-49551952 chr12 49551653 49551952 AluSx1 SINE + chr12:49551960-49552253 chr12 49551960 49552253 AluSq2 SINE + chr12:49552610-49554257 chr12 49552610 49554257 MER50 LTR - chr12:49552871-49553802 chr12 49552871 49553802 AluSz SINE - chr12:49553048-49553356 chr12 49553048 49553356 AluY SINE - chr12:49553363-49553665 chr12 49553363 49553665 AluY SINE - chr12:49554395-49555074 chr12 49554395 49555074 MER51B LTR + chr12:49554578-49554888 chr12 49554578 49554888 AluSx1 SINE - chr12:49555152-49555266 chr12 49555152 49555266 AluSx1 SINE - chr12:49555267-49555548 chr12 49555267 49555548 MER4CL34 LTR - chr12:49555564-49556549 chr12 49555564 49556549 L1M4 LINE + chr12:49555727-49556478 chr12 49555727 49556478 L1MDa LINE + chr12:49555830-49556126 chr12 49555830 49556126 AluSz SINE + chr12:49556556-49556993 chr12 49556556 49556993 MLT1C LTR + chr12:49556993-49557177 chr12 49556993 49557177 L1M4 LINE + chr12:49557177-49557335 chr12 49557177 49557335 AluSq SINE - chr12:49557335-49557495 chr12 49557335 49557495 AluSg4 SINE - chr12:49557645-49557949 chr12 49557645 49557949 AluY SINE - chr12:49557967-49558266 chr12 49557967 49558266 AluJr SINE - chr12:49558360-49558662 chr12 49558360 49558662 AluJo SINE + chr12:49558855-49558966 chr12 49558855 49558966 Charlie2b DNA + chr12:49558984-49559266 chr12 49558984 49559266 AluJr SINE - chr12:49559301-49559365 chr12 49559301 49559365 (TA)n Simple_repeat + chr12:49559365-49559509 chr12 49559365 49559509 AluJr SINE - chr12:49559515-49559622 chr12 49559515 49559622 Charlie2b DNA + chr12:49559645-49559944 chr12 49559645 49559944 AluSx1 SINE + chr12:49559991-49560291 chr12 49559991 49560291 AluY SINE + chr12:49560333-49560476 chr12 49560333 49560476 L2-1_AMi LINE + chr12:49560512-49560699 chr12 49560512 49560699 L2 LINE + chr12:49560774-49561393 chr12 49560774 49561393 AluSq2 SINE - chr12:49560953-49561258 chr12 49560953 49561258 AluSx4 SINE - chr12:49561393-49565430 chr12 49561393 49565430 L1MB7 LINE + chr12:49561595-49562691 chr12 49561595 49562691 MER21A LTR + chr12:49561740-49562056 chr12 49561740 49562056 AluSx SINE - chr12:49562776-49562891 chr12 49562776 49562891 AluJo SINE + chr12:49562891-49563192 chr12 49562891 49563192 AluSx SINE - chr12:49563714-49563995 chr12 49563714 49563995 AluSx4 SINE + chr12:49564071-49564370 chr12 49564071 49564370 AluSx SINE + chr12:49564370-49564678 chr12 49564370 49564678 L1MB7 LINE + chr12:49565061-49565365 chr12 49565061 49565365 AluSx SINE - chr12:49565577-49565998 chr12 49565577 49565998 MamTip2b DNA + chr12:49565698-49565984 chr12 49565698 49565984 AluJr SINE - chr12:49566031-49566074 chr12 49566031 49566074 (AT)n Simple_repeat + chr12:49566238-49566269 chr12 49566238 49566269 (ATT)n Simple_repeat + chr12:49566269-49566558 chr12 49566269 49566558 AluSq2 SINE - chr12:49566562-49566763 chr12 49566562 49566763 MLT1F2 LTR + chr12:49567003-49567314 chr12 49567003 49567314 AluSc8 SINE - chr12:49567322-49567605 chr12 49567322 49567605 AluJb SINE - chr12:49567680-49568016 chr12 49567680 49568016 AluJr SINE - chr12:49568095-49568804 chr12 49568095 49568804 AluJb SINE - chr12:49568293-49568417 chr12 49568293 49568417 AluSz SINE + chr12:49568427-49568726 chr12 49568427 49568726 AluSc SINE + chr12:49568727-49568748 chr12 49568727 49568748 (T)n Simple_repeat + chr12:49568812-49569110 chr12 49568812 49569110 AluSp SINE - chr12:49569503-49569817 chr12 49569503 49569817 AluSg SINE - chr12:49569870-49570183 chr12 49569870 49570183 AluJr4 SINE + chr12:49570295-49570599 chr12 49570295 49570599 AluYk3 SINE + chr12:49570639-49571319 chr12 49570639 49571319 MLT1H2 LTR - chr12:49570945-49571061 chr12 49570945 49571061 AluJr4 SINE + chr12:49571061-49571114 chr12 49571061 49571114 (TA)n Simple_repeat + chr12:49571319-49571428 chr12 49571319 49571428 Charlie4z DNA - chr12:49571443-49571718 chr12 49571443 49571718 L1M5 LINE + chr12:49571724-49571821 chr12 49571724 49571821 L4_A_Mam LINE + chr12:49571988-49573120 chr12 49571988 49573120 L1M5 LINE + chr12:49572021-49572053 chr12 49572021 49572053 (TTG)n Simple_repeat + chr12:49572053-49572944 chr12 49572053 49572944 AluSz6 SINE - chr12:49572204-49572505 chr12 49572204 49572505 AluSx SINE - chr12:49572507-49572810 chr12 49572507 49572810 AluSc SINE - chr12:49573180-49573322 chr12 49573180 49573322 AluJb SINE - chr12:49573558-49573727 chr12 49573558 49573727 AluSz SINE - chr12:49573727-49574020 chr12 49573727 49574020 AluSq SINE - chr12:49574083-49574395 chr12 49574083 49574395 AluJb SINE + chr12:49574402-49574699 chr12 49574402 49574699 AluSq2 SINE + chr12:49576875-49577169 chr12 49576875 49577169 AluSz SINE - chr12:49577181-49577452 chr12 49577181 49577452 AluSc8 SINE - chr12:49577452-49577496 chr12 49577452 49577496 THE1D LTR + chr12:49578071-49578377 chr12 49578071 49578377 AluSz SINE + chr12:49585454-49585528 chr12 49585454 49585528 (TTTC)n Simple_repeat + chr12:49585886-49586023 chr12 49585886 49586023 AluSx1 SINE + chr12:49586026-49586311 chr12 49586026 49586311 AluSz6 SINE + chr12:49586575-49587312 chr12 49586575 49587312 L2 LINE + chr12:49586679-49586708 chr12 49586679 49586708 (TTGT)n Simple_repeat + chr12:49587330-49587454 chr12 49587330 49587454 FLAM_A SINE - chr12:49587862-49587895 chr12 49587862 49587895 (TGTT)n Simple_repeat + chr12:49588445-49588471 chr12 49588445 49588471 (TA)n Simple_repeat + chr12:49588470-49588503 chr12 49588470 49588503 (AG)n Simple_repeat + chr12:49588807-49589118 chr12 49588807 49589118 AluJo SINE + chr12:49590119-49590424 chr12 49590119 49590424 AluSx1 SINE + chr12:49590429-49590717 chr12 49590429 49590717 AluJr SINE + chr12:49590717-49590728 chr12 49590717 49590728 (TAA)n Simple_repeat + chr12:49590728-49591018 chr12 49590728 49591018 AluSx SINE + chr12:49591018-49591060 chr12 49591018 49591060 (TAA)n Simple_repeat + chr12:49591256-49591328 chr12 49591256 49591328 L2c LINE - chr12:49592622-49592661 chr12 49592622 49592661 GA-rich Low_complexity + chr12:49593309-49593617 chr12 49593309 49593617 AluSz SINE + chr12:49593617-49593650 chr12 49593617 49593650 (AT)n Simple_repeat + chr12:49593661-49593734 chr12 49593661 49593734 MIRb SINE - chr12:49594307-49594370 chr12 49594307 49594370 MER5A DNA - chr12:49594598-49594619 chr12 49594598 49594619 (T)n Simple_repeat + chr12:49595178-49595232 chr12 49595178 49595232 A-rich Low_complexity + chr12:49596167-49596196 chr12 49596167 49596196 (AATA)n Simple_repeat + chr12:49596196-49596503 chr12 49596196 49596503 AluSp SINE + chr12:49596503-49596552 chr12 49596503 49596552 (AATA)n Simple_repeat + chr12:49597307-49597398 chr12 49597307 49597398 LTR9 LTR + chr12:49597526-49597817 chr12 49597526 49597817 AluSp SINE + chr12:49599003-49599201 chr12 49599003 49599201 MER63A DNA + chr12:49599203-49599519 chr12 49599203 49599519 AluSx SINE + chr12:49599564-49599720 chr12 49599564 49599720 AluJb SINE + chr12:49600487-49600518 chr12 49600487 49600518 A-rich Low_complexity + chr12:49600714-49600753 chr12 49600714 49600753 (AAAG)n Simple_repeat + chr12:49600753-49601067 chr12 49600753 49601067 AluSc SINE + chr12:49601067-49601100 chr12 49601067 49601100 (GAAGGAAG)n Simple_repeat + chr12:49601109-49601126 chr12 49601109 49601126 (AAAG)n Simple_repeat + chr12:49601126-49601408 chr12 49601126 49601408 AluSg SINE + chr12:49601437-49601753 chr12 49601437 49601753 AluSz SINE + chr12:49601758-49601959 chr12 49601758 49601959 L1MC3 LINE + chr12:49602019-49605086 chr12 49602019 49605086 L1MC5a LINE + chr12:49603507-49603552 chr12 49603507 49603552 (ATTATT)n Simple_repeat + chr12:49603857-49603871 chr12 49603857 49603871 (ATTATT)n Simple_repeat + chr12:49604554-49604866 chr12 49604554 49604866 AluSz SINE + chr12:49605161-49605176 chr12 49605161 49605176 (ATTA)n Simple_repeat + chr12:49605176-49605465 chr12 49605176 49605465 AluSz SINE + chr12:49605465-49605501 chr12 49605465 49605501 (ATTA)n Simple_repeat + chr12:49605511-49605820 chr12 49605511 49605820 AluSx SINE + chr12:49605842-49606087 chr12 49605842 49606087 AluSx1 SINE + chr12:49606432-49606565 chr12 49606432 49606565 LTR16A LTR + chr12:49606552-49606876 chr12 49606552 49606876 MLT1B LTR + chr12:49606885-49607159 chr12 49606885 49607159 L1ME3D LINE + chr12:49607205-49607369 chr12 49607205 49607369 AluJb SINE - chr12:49609395-49609714 chr12 49609395 49609714 AluSp SINE + chr12:49609965-49610131 chr12 49609965 49610131 MIR3 SINE - chr12:49611608-49611915 chr12 49611608 49611915 AluYk3 SINE + chr12:49612537-49612844 chr12 49612537 49612844 AluSg4 SINE + chr12:49612844-49612865 chr12 49612844 49612865 MIR SINE - chr12:49612993-49613294 chr12 49612993 49613294 AluSp SINE + chr12:49613812-49614115 chr12 49613812 49614115 AluSg SINE + chr12:49615379-49615691 chr12 49615379 49615691 AluY SINE + chr12:49616055-49616367 chr12 49616055 49616367 AluSq2 SINE + chr12:49616490-49616560 chr12 49616490 49616560 GA-rich Low_complexity + chr12:49616882-49617194 chr12 49616882 49617194 AluJo SINE + chr12:49617814-49618041 chr12 49617814 49618041 AluJr SINE + chr12:49618625-49618688 chr12 49618625 49618688 (TTTC)n Simple_repeat + chr12:49618688-49618824 chr12 49618688 49618824 FLAM_C SINE - chr12:49618832-49619633 chr12 49618832 49619633 L2b LINE + chr12:49619924-49620228 chr12 49619924 49620228 AluSx1 SINE + chr12:49620275-49620583 chr12 49620275 49620583 AluSp SINE + chr12:49620694-49620817 chr12 49620694 49620817 MIR3 SINE + chr12:49621070-49621371 chr12 49621070 49621371 AluSx SINE + chr12:54574520-54574787 chr12 54574520 54574787 AluSz SINE + chr12:56124060-56124152 chr12 56124060 56124152 L2d2 LINE - chr12:56124444-56124596 chr12 56124444 56124596 L1MC5a LINE + chr12:56438121-56438426 chr12 56438121 56438426 AluSx1 SINE - chr12:56735390-56735590 chr12 56735390 56735590 EUTREP16 LTR - chr12:56735799-56736099 chr12 56735799 56736099 AluSp SINE + chr12:56736103-56736385 chr12 56736103 56736385 AluJo SINE + chr12:56986290-56986594 chr12 56986290 56986594 AluSx1 SINE - chr12:58325545-58325576 chr12 58325545 58325576 (T)n Simple_repeat + chr12:58327651-58327678 chr12 58327651 58327678 (T)n Simple_repeat + chr12:58329238-58329350 chr12 58329238 58329350 L2 LINE + chr12:59713998-59714125 chr12 59713998 59714125 MIR3 SINE - chr12:62998191-62998215 chr12 62998191 62998215 (T)n Simple_repeat + chr12:63000464-63000609 chr12 63000464 63000609 AluJr SINE + chr12:63000623-63000740 chr12 63000623 63000740 FLAM_A SINE + chr12:63001961-63002025 chr12 63001961 63002025 L2c LINE - chr12:63004115-63004148 chr12 63004115 63004148 (ATTATA)n Simple_repeat + chr12:63004394-63004638 chr12 63004394 63004638 L1MA7 LINE - chr12:63004717-63004756 chr12 63004717 63004756 (TG)n Simple_repeat + chr12:63007260-63007286 chr12 63007260 63007286 (GT)n Simple_repeat + chr1:26355-26412 chr1 26355 26412 MIR1_Amn SINE + chr1:26582-27137 chr1 26582 27137 L2c LINE - chr12:66513383-66513470 chr12 66513383 66513470 Tigger12 DNA + chr12:66516186-66516279 chr12 66516186 66516279 L2a LINE + chr12:66732429-66732465 chr12 66732429 66732465 (AAAC)n Simple_repeat + chr12:66732676-66732777 chr12 66732676 66732777 MARNA DNA - chr12:66732838-66732966 chr12 66732838 66732966 MER85 DNA + chr12:66733083-66733220 chr12 66733083 66733220 FLAM_C SINE - chr12:66734266-66735305 chr12 66734266 66735305 MLT2B3 LTR - chr12:66734337-66734782 chr12 66734337 66734782 MLT2A1 LTR - chr12:66735415-66735753 chr12 66735415 66735753 THE1D LTR + chr12:66737078-66737348 chr12 66737078 66737348 AluJb SINE - chr12:66738953-66739348 chr12 66738953 66739348 MER92B LTR - chr12:66739497-66739605 chr12 66739497 66739605 U13 snRNA + chr12:66739804-66740200 chr12 66739804 66740200 L3 LINE - chr12:67233980-67233999 chr12 67233980 67233999 (TAA)n Simple_repeat + chr12:67248814-67248839 chr12 67248814 67248839 (TTAT)n Simple_repeat + chr12:67329792-67329813 chr12 67329792 67329813 (AAAC)n Simple_repeat + chr12:67333928-67333952 chr12 67333928 67333952 (TG)n Simple_repeat + chr12:67346945-67346986 chr12 67346945 67346986 L2a LINE - chr12:67370418-67370457 chr12 67370418 67370457 (CTA)n Simple_repeat + chr12:67397477-67397484 chr12 67397477 67397484 (ATAA)n Simple_repeat + chr12:67432798-67432832 chr12 67432798 67432832 (AC)n Simple_repeat + chr12:67435174-67435197 chr12 67435174 67435197 (GA)n Simple_repeat + chr12:67451408-67451436 chr12 67451408 67451436 (CAA)n Simple_repeat + chr1:26803241-26803325 chr1 26803241 26803325 MIR SINE - chr1:26825015-26825111 chr1 26825015 26825111 L2c LINE + chr12:72657175-72657210 chr12 72657175 72657210 (TGTTT)n Simple_repeat + chr12:74937338-74937357 chr12 74937338 74937357 (AAC)n Simple_repeat + chr12:76434010-76434079 chr12 76434010 76434079 MLT1H2 LTR + chr12:76436463-76436660 chr12 76436463 76436660 L1MC4 LINE + chr12:76437427-76437575 chr12 76437427 76437575 L2c LINE + chr12:76438302-76438387 chr12 76438302 76438387 Tigger5b DNA - chr12:77459994-77460022 chr12 77459994 77460022 (TTTG)n Simple_repeat + chr1:27832-28014 chr1 27832 28014 MIRb SINE - chr12:7948716-7948884 chr12 7948716 7948884 AluSx3 SINE + chr12:7948884-7948928 chr12 7948884 7948928 (AAAT)n Simple_repeat + chr12:7949347-7949655 chr12 7949347 7949655 AluSx3 SINE - chr12:7949660-7949949 chr12 7949660 7949949 AluSx1 SINE - chr12:7949953-7950252 chr12 7949953 7950252 AluSq2 SINE - chr12:7950252-7950547 chr12 7950252 7950547 AluSz SINE - chr12:7950690-7950979 chr12 7950690 7950979 AluSx SINE + chr12:7951137-7951173 chr12 7951137 7951173 (ATTTTC)n Simple_repeat + chr12:7951756-7952174 chr12 7951756 7952174 LTR102_Mam LTR - chr12:7952175-7952477 chr12 7952175 7952477 AluSx1 SINE + chr12:7952545-7952835 chr12 7952545 7952835 AluSg SINE + chr12:7952950-7953061 chr12 7952950 7953061 HY1 scRNA - chr12:7953069-7953369 chr12 7953069 7953369 AluSq2 SINE - chr12:7953379-7953476 chr12 7953379 7953476 A-rich Low_complexity + chr12:7953479-7953749 chr12 7953479 7953749 AluJr SINE - chr12:7953760-7953895 chr12 7953760 7953895 MIRb SINE - chr12:7954201-7954440 chr12 7954201 7954440 AluJo SINE + chr12:7954461-7954496 chr12 7954461 7954496 (TTGT)n Simple_repeat + chr12:7954606-7954912 chr12 7954606 7954912 AluSx4 SINE - chr12:7954912-7955096 chr12 7954912 7955096 AluSz SINE - chr12:7955382-7955555 chr12 7955382 7955555 AluSx1 SINE + chr12:7955555-7955626 chr12 7955555 7955626 AluJr4 SINE - chr12:7955705-7956016 chr12 7955705 7956016 AluSc8 SINE - chr12:7956016-7956183 chr12 7956016 7956183 AluSg4 SINE - chr12:7956236-7956322 chr12 7956236 7956322 L1MC5a LINE - chr12:7956496-7956808 chr12 7956496 7956808 AluJr SINE + chr12:7957041-7957356 chr12 7957041 7957356 AluSg SINE + chr12:7957566-7957871 chr12 7957566 7957871 AluJb SINE + chr12:7957873-7958186 chr12 7957873 7958186 AluSz6 SINE + chr12:7958480-7958784 chr12 7958480 7958784 AluSc SINE - chr12:7958884-7959190 chr12 7958884 7959190 AluSg SINE + chr12:7959468-7959577 chr12 7959468 7959577 Charlie19a DNA - chr12:7960095-7960410 chr12 7960095 7960410 AluSc8 SINE - chr12:7960775-7961095 chr12 7960775 7961095 L1MEf LINE - chr12:7961095-7961399 chr12 7961095 7961399 AluY SINE - chr12:7961466-7961505 chr12 7961466 7961505 tRNA-Ala-GCY_ tRNA + chr12:7961505-7961529 chr12 7961505 7961529 (A)n Simple_repeat + chr12:7961581-7961896 chr12 7961581 7961896 AluY SINE - chr12:7961901-7961943 chr12 7961901 7961943 (TTTTAT)n Simple_repeat + chr12:7961964-7961995 chr12 7961964 7961995 (TTTATTT)n Simple_repeat + chr12:7961995-7962294 chr12 7961995 7962294 AluJr SINE - chr12:7962332-7962462 chr12 7962332 7962462 AluJr SINE - chr12:7962462-7962756 chr12 7962462 7962756 AluSz SINE - chr12:7962879-7963170 chr12 7962879 7963170 AluSz SINE + chr12:7963206-7963308 chr12 7963206 7963308 AluJb SINE + chr12:7963222-7963331 chr12 7963222 7963331 SVA_E Retroposon - chr12:7963369-7963525 chr12 7963369 7963525 FRAM SINE - chr12:7963525-7963828 chr12 7963525 7963828 AluY SINE - chr12:7963865-7963943 chr12 7963865 7963943 MER2B DNA + chr12:7963934-7964448 chr12 7963934 7964448 MER2 DNA + chr12:7964063-7964349 chr12 7964063 7964349 AluSc SINE - chr12:7964622-7965053 chr12 7964622 7965053 MIRb SINE - chr12:7964657-7964955 chr12 7964657 7964955 AluSq2 SINE - chr12:80165479-80165534 chr12 80165479 80165534 MIRb SINE + chr12:80331089-80331100 chr12 80331089 80331100 (AC)n Simple_repeat + chr12:8043895-8044209 chr12 8043895 8044209 AluSz SINE - chr12:8044263-8044562 chr12 8044263 8044562 AluSc8 SINE - chr12:8044652-8044681 chr12 8044652 8044681 (CAAA)n Simple_repeat + chr12:8045631-8045928 chr12 8045631 8045928 AluY SINE + chr12:8046700-8047000 chr12 8046700 8047000 AluSx3 SINE + chr12:8047013-8047324 chr12 8047013 8047324 AluSx SINE + chr12:8047333-8047944 chr12 8047333 8047944 AluSx1 SINE + chr12:8047531-8047828 chr12 8047531 8047828 AluSp SINE - chr12:8048516-8048783 chr12 8048516 8048783 AluSx1 SINE - chr12:8049679-8049989 chr12 8049679 8049989 AluSx1 SINE + chr12:8050145-8050776 chr12 8050145 8050776 AluSz SINE - chr12:8050322-8050631 chr12 8050322 8050631 AluY SINE - chr12:8050487-8050512 chr12 8050487 8050512 (T)n Simple_repeat + chr12:8051843-8052123 chr12 8051843 8052123 AluY SINE + chr12:8052213-8052466 chr12 8052213 8052466 AluSx1 SINE + chr12:8052801-8052933 chr12 8052801 8052933 AluJb SINE + chr12:8052952-8053157 chr12 8052952 8053157 AluSx SINE + chr12:8053152-8053230 chr12 8053152 8053230 AluSz SINE - chr12:8056049-8056190 chr12 8056049 8056190 AluSx3 SINE - chr12:8061055-8061242 chr12 8061055 8061242 AluSz SINE + chr12:8062273-8062335 chr12 8062273 8062335 MER41B LTR - chr12:8064515-8064639 chr12 8064515 8064639 FLAM_C SINE + chr12:8065262-8065394 chr12 8065262 8065394 AluSz6 SINE - chr12:8067549-8067681 chr12 8067549 8067681 L1MB8 LINE - chr12:8089305-8089326 chr12 8089305 8089326 (T)n Simple_repeat + chr12:8091299-8091365 chr12 8091299 8091365 Charlie5 DNA - chr12:8092637-8092688 chr12 8092637 8092688 (AATCTC)n Simple_repeat + chr12:8094891-8094935 chr12 8094891 8094935 (AAAT)n Simple_repeat + chr12:8096298-8096351 chr12 8096298 8096351 AluJr SINE - chr12:8098424-8098476 chr12 8098424 8098476 X32_DNA DNA - chr12:8099826-8099871 chr12 8099826 8099871 (TTCCT)n Simple_repeat + chr12:8099871-8099915 chr12 8099871 8099915 (CCCTC)n Simple_repeat + chr12:8100569-8100609 chr12 8100569 8100609 (TTATTT)n Simple_repeat + chr12:8111154-8111188 chr12 8111154 8111188 U2 snRNA - chr12:8123905-8123924 chr12 8123905 8123924 (CT)n Simple_repeat + chr12:8123923-8123942 chr12 8123923 8123942 (CA)n Simple_repeat + chr12:8127246-8127332 chr12 8127246 8127332 MER81 DNA + chr12:8127833-8127904 chr12 8127833 8127904 MER5A1 DNA + chr12:8128587-8128621 chr12 8128587 8128621 (A)n Simple_repeat + chr12:8130869-8130920 chr12 8130869 8130920 (TTTTTC)n Simple_repeat + chr12:8137518-8137558 chr12 8137518 8137558 A-rich Low_complexity + chr12:8138303-8138336 chr12 8138303 8138336 U2 snRNA - chr12:8140536-8140555 chr12 8140536 8140555 (TTTA)n Simple_repeat + chr12:8143740-8143759 chr12 8143740 8143759 (A)n Simple_repeat + chr12:8143807-8143863 chr12 8143807 8143863 L2b LINE - chr12:8146843-8146913 chr12 8146843 8146913 MER91A DNA + chr1:28150-28302 chr1 28150 28302 MIRb SINE - chr12:8164852-8164884 chr12 8164852 8164884 (AAAT)n Simple_repeat + chr12:8519304-8519383 chr12 8519304 8519383 MADE1 DNA - chr12:8519551-8519580 chr12 8519551 8519580 (CCA)n Simple_repeat + chr12:8524130-8524158 chr12 8524130 8524158 (CCAGAG)n Simple_repeat + chr12:86368182-86368210 chr12 86368182 86368210 (CATACA)n Simple_repeat + chr12:86369224-86369341 chr12 86369224 86369341 MIRb SINE - chr12:86371559-86371613 chr12 86371559 86371613 (CA)n Simple_repeat + chr12:86372021-86372148 chr12 86372021 86372148 MIR3 SINE + chr12:8835995-8836059 chr12 8835995 8836059 MLT1J1 LTR + chr12:8838850-8838886 chr12 8838850 8838886 (CCCCT)n Simple_repeat + chr12:8840413-8840437 chr12 8840413 8840437 (A)n Simple_repeat + chr12:8844664-8844707 chr12 8844664 8844707 (TTTTCAT)n Simple_repeat + chr12:8845309-8845346 chr12 8845309 8845346 G-rich Low_complexity + chr12:8847779-8847814 chr12 8847779 8847814 (C)n Simple_repeat + chr1:28905617-28905907 chr1 28905617 28905907 AluSz SINE + chr1:28906528-28906840 chr1 28906528 28906840 AluSx1 SINE + chr1:28922024-28922073 chr1 28922024 28922073 L2d2 LINE - chr1:28922446-28922576 chr1 28922446 28922576 MIRb SINE + chr12:8929811-8929836 chr12 8929811 8929836 (T)n Simple_repeat + chr12:8929969-8930011 chr12 8929969 8930011 (TGTTTT)n Simple_repeat + chr12:8930199-8930228 chr12 8930199 8930228 A-rich Low_complexity + chr12:8930680-8930712 chr12 8930680 8930712 (TTTTTG)n Simple_repeat + chr12:8932999-8933038 chr12 8932999 8933038 (TTTGTTT)n Simple_repeat + chr12:8933654-8933951 chr12 8933654 8933951 AluSq SINE + chr12:8934163-8934203 chr12 8934163 8934203 (CCCTCT)n Simple_repeat + chr12:8938310-8949796 chr12 8938310 8949796 MSTA-int LTR - chr12:8947138-8948723 chr12 8947138 8948723 LTR12C LTR + chr12:8948737-8949027 chr12 8948737 8949027 AluYk2 SINE - chr12:8949048-8949207 chr12 8949048 8949207 MLT-int LTR - chr12:89749880-89749906 chr12 89749880 89749906 (TCAT)n Simple_repeat + chr1:28975391-28975537 chr1 28975391 28975537 AluJr4 SINE + chr12:9066126-9066233 chr12 9066126 9066233 L2a LINE + chr12:93408789-93408818 chr12 93408789 93408818 MIRc SINE + chr12:93410292-93410318 chr12 93410292 93410318 (A)n Simple_repeat + chr12:93410937-93410963 chr12 93410937 93410963 (T)n Simple_repeat + chr12:93411093-93411117 chr12 93411093 93411117 (T)n Simple_repeat + chr12:93800322-93800635 chr12 93800322 93800635 MER2 DNA + chr12:93898539-93898708 chr12 93898539 93898708 L2a LINE + chr12:93898761-93898888 chr12 93898761 93898888 Charlie4z DNA + chr12:93900386-93900429 chr12 93900386 93900429 L2d2 LINE - chr12:93900679-93900797 chr12 93900679 93900797 MIR3 SINE - chr12:93901126-93901159 chr12 93901126 93901159 (TCAGTT)n Simple_repeat + chr12:93902979-93903235 chr12 93902979 93903235 L1M5 LINE - chr12:93903262-93903562 chr12 93903262 93903562 7SLRNA srpRNA + chr12:93903562-93904626 chr12 93903562 93904626 L1MC1 LINE - chr12:9437235-9437346 chr12 9437235 9437346 MLT1A LTR - chr12:9447768-9447938 chr12 9447768 9447938 MIRc SINE - chr12:9448171-9450116 chr12 9448171 9450116 L2b LINE - chr12:9448713-9448855 chr12 9448713 9448855 L2d LINE + chr12:9453027-9453096 chr12 9453027 9453096 MIRb SINE - chr12:9453215-9453352 chr12 9453215 9453352 MIRb SINE - chr12:9462210-9462313 chr12 9462210 9462313 MER5B DNA - chr12:95703776-95704259 chr12 95703776 95704259 L1MB2 LINE - chr12:9574716-9574816 chr12 9574716 9574816 MER5B DNA + chr12:9583673-9583810 chr12 9583673 9583810 MIRb SINE + chr12:9583929-9583998 chr12 9583929 9583998 MIRb SINE + chr12:9587014-9587405 chr12 9587014 9587405 L2b LINE + chr12:9588257-9588399 chr12 9588257 9588399 L2d LINE - chr12:9588877-9588941 chr12 9588877 9588941 L2d2 LINE + chr12:9589174-9589344 chr12 9589174 9589344 MIRc SINE + chr12:95945363-95945433 chr12 95945363 95945433 L2d2 LINE + chr12:95947536-95947576 chr12 95947536 95947576 (AC)n Simple_repeat + chr12:95954904-95954915 chr12 95954904 95954915 (AGT)n Simple_repeat + chr12:95955377-95955414 chr12 95955377 95955414 (AGT)n Simple_repeat + chr12:95961918-95961936 chr12 95961918 95961936 (TC)n Simple_repeat + chr12:95968142-95968163 chr12 95968142 95968163 (A)n Simple_repeat + chr12:95999269-95999293 chr12 95999269 95999293 (TC)n Simple_repeat + chr12:96001318-96001347 chr12 96001318 96001347 (ATTT)n Simple_repeat + chr12:96008723-96008754 chr12 96008723 96008754 (TAATA)n Simple_repeat + chr12:96011870-96011895 chr12 96011870 96011895 (TAA)n Simple_repeat + chr12:96016600-96016631 chr12 96016600 96016631 (TAA)n Simple_repeat + chr12:96023947-96023970 chr12 96023947 96023970 (TAAA)n Simple_repeat + chr12:96032570-96032596 chr12 96032570 96032596 (AATC)n Simple_repeat + chr12:96035998-96036032 chr12 96035998 96036032 (T)n Simple_repeat + chr12:9605423-9605446 chr12 9605423 9605446 (AAC)n Simple_repeat + chr12:97856839-97856886 chr12 97856839 97856886 (AC)n Simple_repeat + chr12:97862626-97862689 chr12 97862626 97862689 L2a LINE - chr12:97862876-97862919 chr12 97862876 97862919 U5 snRNA - chr12:97862919-97862967 chr12 97862919 97862967 (GT)n Simple_repeat + chr12:97862968-97863031 chr12 97862968 97863031 (TA)n Simple_repeat + chr12:97863240-97863438 chr12 97863240 97863438 MIRb SINE - chr12:97863463-97863561 chr12 97863463 97863561 L2a LINE - chr12:97864143-97864195 chr12 97864143 97864195 L2a LINE + chr12:97864208-97864251 chr12 97864208 97864251 GA-rich Low_complexity + chr12:97866639-97866667 chr12 97866639 97866667 (TTCA)n Simple_repeat + chr12:97868387-97868423 chr12 97868387 97868423 A-rich Low_complexity + chr12:97869180-97869350 chr12 97869180 97869350 MIRb SINE + chr12:97869355-97869377 chr12 97869355 97869377 (T)n Simple_repeat + chr12:97869417-97869526 chr12 97869417 97869526 MIRc SINE - chr12:97870225-97870347 chr12 97870225 97870347 UCON83 DNA? - chr12:97872168-97872271 chr12 97872168 97872271 MIRb SINE - chr12:97872801-97874829 chr12 97872801 97874829 L2c LINE + chr12:97872911-97873230 chr12 97872911 97873230 AluJr SINE - chr12:97873856-97874142 chr12 97873856 97874142 AluY SINE - chr12:97875981-97876195 chr12 97875981 97876195 MER58A DNA - chr12:97877604-97877721 chr12 97877604 97877721 L1ME3G LINE - chr12:97878542-97878671 chr12 97878542 97878671 MIRc SINE - chr12:97878993-97879162 chr12 97878993 97879162 Tigger14a DNA + chr12:97879388-97879557 chr12 97879388 97879557 MIRc SINE - chr12:97880772-97880893 chr12 97880772 97880893 UCON35 Unknown - chr12:97881880-97882102 chr12 97881880 97882102 AluSx SINE + chr12:97882941-97883247 chr12 97882941 97883247 AluJo SINE + chr12:97883542-97883761 chr12 97883542 97883761 MIR SINE - chr12:97884113-97884348 chr12 97884113 97884348 MIR SINE + chr12:97886177-97886215 chr12 97886177 97886215 (GTTT)n Simple_repeat + chr12:97886411-97886444 chr12 97886411 97886444 (TTGTTT)n Simple_repeat + chr12:97888173-97888313 chr12 97888173 97888313 AluJr SINE + chr12:97889967-97890288 chr12 97889967 97890288 Tigger19a DNA + chr12:97892101-97892257 chr12 97892101 97892257 MIR SINE + chr12:97893201-97893376 chr12 97893201 97893376 MIRc SINE + chr12:97893421-97893736 chr12 97893421 97893736 AluSx SINE - chr12:97894204-97894239 chr12 97894204 97894239 L2d2 LINE - chr12:97894271-97894384 chr12 97894271 97894384 MIRb SINE - chr12:97894428-97894580 chr12 97894428 97894580 MIRb SINE - chr12:97894592-97894886 chr12 97894592 97894886 MER5C DNA - chr12:97896068-97900804 chr12 97896068 97900804 L2c LINE - chr12:97896251-97896535 chr12 97896251 97896535 AluJb SINE - chr12:97896535-97896639 chr12 97896535 97896639 L2c LINE - chr12:97897701-97897907 chr12 97897701 97897907 AluSz SINE - chr12:97897907-97898205 chr12 97897907 97898205 AluSz SINE + chr12:97900453-97900759 chr12 97900453 97900759 AluSg SINE - chr12:97901026-97901065 chr12 97901026 97901065 (T)n Simple_repeat + chr12:97902229-97902301 chr12 97902229 97902301 L2 LINE - chr12:97902434-97902478 chr12 97902434 97902478 (TTT)n Simple_repeat + chr12:97903572-97903644 chr12 97903572 97903644 L2a LINE - chr12:97903650-97903829 chr12 97903650 97903829 L2b LINE + chr12:97904925-97905193 chr12 97904925 97905193 AluSz SINE - chr12:97905309-97905446 chr12 97905309 97905446 MIRb SINE + chr12:97905719-97905869 chr12 97905719 97905869 LTR12C LTR - chr12:97905871-97907080 chr12 97905871 97907080 LTR12E LTR - chr12:97907085-97907889 chr12 97907085 97907889 L3 LINE + chr12:97907209-97907329 chr12 97907209 97907329 L2a LINE - chr12:97908287-97908320 chr12 97908287 97908320 (ATATCT)n Simple_repeat + chr12:97909282-97909372 chr12 97909282 97909372 L2d2 LINE + chr12:97911278-97911777 chr12 97911278 97911777 L1ME4a LINE - chr12:97912285-97912392 chr12 97912285 97912392 MER5A DNA - chr12:97912556-97912855 chr12 97912556 97912855 AluJr SINE - chr12:97914280-97914329 chr12 97914280 97914329 A-rich Low_complexity + chr12:97915207-97915237 chr12 97915207 97915237 (AT)n Simple_repeat + chr12:97915237-97915243 chr12 97915237 97915243 (ATATATA)n Simple_repeat + chr12:97916365-97916603 chr12 97916365 97916603 MER112 DNA + chr12:97917125-97917388 chr12 97917125 97917388 L1MA6 LINE + chr12:97917573-97917881 chr12 97917573 97917881 AluY SINE + chr12:97917981-97918120 chr12 97917981 97918120 MER5A1 DNA + chr12:97919312-97920290 chr12 97919312 97920290 L1ME4b LINE - chr12:97919508-97920040 chr12 97919508 97920040 MER1A DNA + chr12:97920480-97920510 chr12 97920480 97920510 (TTA)n Simple_repeat + chr12:97920516-97920596 chr12 97920516 97920596 MIR SINE - chr12:97920633-97920821 chr12 97920633 97920821 MIRb SINE - chr12:97921518-97921556 chr12 97921518 97921556 (TAT)n Simple_repeat + chr12:97921737-97921877 chr12 97921737 97921877 MIR SINE - chr12:97922557-97922648 chr12 97922557 97922648 L2a LINE - chr12:97922837-97922868 chr12 97922837 97922868 (ATATAT)n Simple_repeat + chr12:97925566-97925601 chr12 97925566 97925601 (TTTGTCT)n Simple_repeat + chr12:97926005-97926104 chr12 97926005 97926104 L2a LINE + chr12:97929197-97929419 chr12 97929197 97929419 MIRb SINE - chr12:97933734-97933817 chr12 97933734 97933817 X11_DNA DNA - chr12:97934316-97934554 chr12 97934316 97934554 MIRb SINE + chr12:97934686-97934719 chr12 97934686 97934719 (ATAG)n Simple_repeat + chr12:97934719-97934762 chr12 97934719 97934762 (ATAGAT)n Simple_repeat + chr12:97934905-97935052 chr12 97934905 97935052 MIRc SINE - chr12:97935498-97935528 chr12 97935498 97935528 (AAAAGA)n Simple_repeat + chr12:97935815-97935854 chr12 97935815 97935854 (CATT)n Simple_repeat + chr12:97935861-97938749 chr12 97935861 97938749 MIRb SINE + chr12:97936079-97936222 chr12 97936079 97936222 L2d LINE - chr12:97937084-97937264 chr12 97937084 97937264 L2a LINE + chr12:97937408-97937535 chr12 97937408 97937535 MIR SINE - chr12:97938043-97938178 chr12 97938043 97938178 Tigger19a DNA - chr12:97938983-97939012 chr12 97938983 97939012 (ATC)n Simple_repeat + chr12:97940077-97940382 chr12 97940077 97940382 AluSz SINE + chr12:97943919-97944189 chr12 97943919 97944189 AluSp SINE + chr12:97944670-97944880 chr12 97944670 97944880 MIRb SINE - chr12:97946477-97946497 chr12 97946477 97946497 (TTG)n Simple_repeat + chr12:97947481-97947714 chr12 97947481 97947714 MIRb SINE + chr12:97947721-97948031 chr12 97947721 97948031 AluSx SINE - chr12:97948040-97948125 chr12 97948040 97948125 (TAT)n Simple_repeat + chr12:97951656-97951746 chr12 97951656 97951746 MIRb SINE - chr12:97951825-97951889 chr12 97951825 97951889 (TCC)n Simple_repeat + chr12:97952866-97952897 chr12 97952866 97952897 (TC)n Simple_repeat + chr12:97953701-97953739 chr12 97953701 97953739 (AATTA)n Simple_repeat + chr12:97953938-97953962 chr12 97953938 97953962 (AGA)n Simple_repeat + chr12:97955647-97955682 chr12 97955647 97955682 (AATC)n Simple_repeat + chr12:97958191-97958443 chr12 97958191 97958443 MIRb SINE + chr12:97958443-97958496 chr12 97958443 97958496 (TCTTCC)n Simple_repeat + chr12:97958655-97958746 chr12 97958655 97958746 (ACTGTTT)n Simple_repeat + chr12:97959240-97959311 chr12 97959240 97959311 L2a LINE + chr12:97959450-97959479 chr12 97959450 97959479 (GCAC)n Simple_repeat + chr12:9803032-9803115 chr12 9803032 9803115 MER92A LTR - chr12:9807441-9807523 chr12 9807441 9807523 Charlie2b DNA - chr12:9808027-9808143 chr12 9808027 9808143 MIR SINE - chr12:9808151-9808281 chr12 9808151 9808281 MER94 DNA - chr12:9809145-9809167 chr12 9809145 9809167 (T)n Simple_repeat + chr12:9809644-9809753 chr12 9809644 9809753 THE1D-int LTR + chr12:9809753-9809808 chr12 9809753 9809808 L1PA16 LINE + chr12:9813999-9814174 chr12 9813999 9814174 L1M7 LINE - chr12:9848451-9848490 chr12 9848451 9848490 (TGA)n Simple_repeat + chr12:98944911-98944940 chr12 98944911 98944940 (T)n Simple_repeat + chr12:98947016-98947086 chr12 98947016 98947086 Tigger5b DNA + chr12:98997086-98997315 chr12 98997086 98997315 MLT1G LTR - chr12:98998845-98998878 chr12 98998845 98998878 (TATTT)n Simple_repeat + chr13:100738234-100738558 chr13 100738234 100738558 MLT1J2 LTR - chr13:100738672-100738970 chr13 100738672 100738970 AluSg SINE - chr13:100739481-100739638 chr13 100739481 100739638 MLT1J LTR - chr13:100739718-100739752 chr13 100739718 100739752 A-rich Low_complexity + chr13:100740787-100740856 chr13 100740787 100740856 MIRc SINE - chr13:107193140-107193181 chr13 107193140 107193181 (TGGA)n Simple_repeat + chr1:31652116-31652136 chr1 31652116 31652136 (T)n Simple_repeat + chr13:19982633-19982644 chr13 19982633 19982644 (TTG)n Simple_repeat + chr13:20250426-20250534 chr13 20250426 20250534 MER5A DNA - chr13:20252551-20252686 chr13 20252551 20252686 Charlie7a DNA + chr13:20254115-20254162 chr13 20254115 20254162 (AATTTTT)n Simple_repeat + chr13:20255497-20255558 chr13 20255497 20255558 (ATATATT)n Simple_repeat + chr13:20260381-20260610 chr13 20260381 20260610 MER106A DNA + chr13:20260625-20260717 chr13 20260625 20260717 L1ME4b LINE + chr13:20265775-20266063 chr13 20265775 20266063 AluSx1 SINE + chr13:20267363-20267408 chr13 20267363 20267408 L2a LINE + chr13:20267674-20267705 chr13 20267674 20267705 (AATA)n Simple_repeat + chr13:20267945-20267981 chr13 20267945 20267981 (ACACAT)n Simple_repeat + chr13:20268292-20268319 chr13 20268292 20268319 (AT)n Simple_repeat + chr13:20268319-20268333 chr13 20268319 20268333 (CATA)n Simple_repeat + chr13:20270627-20270673 chr13 20270627 20270673 (CA)n Simple_repeat + chr13:20271295-20271468 chr13 20271295 20271468 MER5A DNA + chr13:20271518-20271604 chr13 20271518 20271604 L2a LINE + chr13:20272418-20272462 chr13 20272418 20272462 A-rich Low_complexity + chr13:20273343-20273408 chr13 20273343 20273408 AluJo SINE - chr13:20273779-20273853 chr13 20273779 20273853 L1MC4 LINE + chr13:21949487-21949513 chr13 21949487 21949513 (GT)n Simple_repeat + chr1:32513089-32513216 chr1 32513089 32513216 MIRb SINE + chr1:32517925-32517975 chr1 32517925 32517975 (AAAG)n Simple_repeat + chr1:32518986-32519009 chr1 32518986 32519009 (TAAT)n Simple_repeat + chr1:32523075-32523104 chr1 32523075 32523104 (T)n Simple_repeat + chr1:32524255-32524416 chr1 32524255 32524416 AluSg SINE + chr1:32698583-32698615 chr1 32698583 32698615 (TTTA)n Simple_repeat + chr1:32699190-32699338 chr1 32699190 32699338 MIR SINE - chr1:32707419-32707463 chr1 32707419 32707463 MIRc SINE + chr13:27816924-27816968 chr13 27816924 27816968 (GT)n Simple_repeat + chr13:27830925-27830951 chr13 27830925 27830951 A-rich Low_complexity + chr13:27830951-27831234 chr13 27830951 27831234 AluSg SINE - chr13:27831234-27831257 chr13 27831234 27831257 A-rich Low_complexity + chr13:27833159-27833223 chr13 27833159 27833223 L2c LINE - chr13:27833380-27833471 chr13 27833380 27833471 MIR SINE + chr13:28711133-28711306 chr13 28711133 28711306 L2b LINE + chr13:28711356-28711493 chr13 28711356 28711493 L3 LINE - chr13:28712429-28712491 chr13 28712429 28712491 (CCTGCC)n Simple_repeat + chr13:31031553-31031674 chr13 31031553 31031674 FLAM_C SINE + chr13:31710276-31710354 chr13 31710276 31710354 L1ME4c LINE + chr13:31710496-31710635 chr13 31710496 31710635 L1ME4a LINE + chr13:32533465-32533482 chr13 32533465 32533482 (TTG)n Simple_repeat + chr13:32547758-32547780 chr13 32547758 32547780 (AAC)n Simple_repeat + chr13:32973923-32974222 chr13 32973923 32974222 AluSx SINE - chr13:37573957-37574003 chr13 37573957 37574003 A-rich Low_complexity + chr13:37574011-37574065 chr13 37574011 37574065 MER53 DNA + chr1:3404540-3404713 chr1 3404540 3404713 L1MA5A LINE - chr1:3405058-3405356 chr1 3405058 3405356 L1MEh LINE - chr13:48506410-48506433 chr13 48506410 48506433 (T)n Simple_repeat + chr1:34943459-34943727 chr1 34943459 34943727 MIR SINE + chr13:50618103-50618156 chr13 50618103 50618156 A-rich Low_complexity + chr13:50620610-50620649 chr13 50620610 50620649 (CCCTTT)n Simple_repeat + chr13:50621467-50621482 chr13 50621467 50621482 (ATTTTA)n Simple_repeat + chr13:50621597-50621636 chr13 50621597 50621636 (ATTTTA)n Simple_repeat + chr13:50622229-50622261 chr13 50622229 50622261 (ATTTTA)n Simple_repeat + chr13:50624616-50624645 chr13 50624616 50624645 (T)n Simple_repeat + chr13:50632089-50632219 chr13 50632089 50632219 FLAM_C SINE + chr13:50638649-50638762 chr13 50638649 50638762 A-rich Low_complexity + chr13:50641227-50641283 chr13 50641227 50641283 MER5A DNA + chr13:50641320-50641412 chr13 50641320 50641412 L2a LINE + chr13:50642467-50642627 chr13 50642467 50642627 FRAM SINE - chr13:50644779-50644806 chr13 50644779 50644806 (A)n Simple_repeat + chr13:50645811-50645840 chr13 50645811 50645840 (CTG)n Simple_repeat + chr13:50646820-50646847 chr13 50646820 50646847 (AAT)n Simple_repeat + chr13:51656453-51656489 chr13 51656453 51656489 A-rich Low_complexity + chr13:51657176-51657182 chr13 51657176 51657182 (TTTTG)n Simple_repeat + chr13:51657182-51657214 chr13 51657182 51657214 (T)n Simple_repeat + chr13:51659320-51659346 chr13 51659320 51659346 (AT)n Simple_repeat + chr13:51665973-51666019 chr13 51665973 51666019 (GACACAG)n Simple_repeat + chr13:51678529-51678544 chr13 51678529 51678544 SVA_A Retroposon - chr13:51686474-51686509 chr13 51686474 51686509 (TG)n Simple_repeat + chr13:51742451-51750357 chr13 51742451 51750357 MLT1J LTR + chr13:51742817-51749799 chr13 51742817 51749799 MSTA-int LTR + chr13:51744001-51748684 chr13 51744001 51748684 HERVH-int LTR + chr13:51748691-51749142 chr13 51748691 51749142 LTR7 LTR + chr13:51749877-51750261 chr13 51749877 51750261 MSTA LTR + chr13:52337174-52337214 chr13 52337174 52337214 MIR3 SINE - chr13:52337652-52337929 chr13 52337652 52337929 AluJo SINE + chr13:52338449-52338659 chr13 52338449 52338659 L2b LINE - chr13:52339484-52339702 chr13 52339484 52339702 L3 LINE + chr13:52743144-52743461 chr13 52743144 52743461 AluJr SINE + chr13:52744838-52744963 chr13 52744838 52744963 AluJo SINE - chr13:52750620-52750742 chr13 52750620 52750742 MIRb SINE - chr13:52752249-52752388 chr13 52752249 52752388 MIRb SINE - chr13:52755743-52755777 chr13 52755743 52755777 L2b LINE - chr13:52755749-52755926 chr13 52755749 52755926 MIRb SINE - chr13:52756142-52756190 chr13 52756142 52756190 A-rich Low_complexity + chr13:52757734-52757775 chr13 52757734 52757775 (ATTTAT)n Simple_repeat + chr13:52758062-52758076 chr13 52758062 52758076 (ATTTAT)n Simple_repeat + chr13:52760960-52760995 chr13 52760960 52760995 A-rich Low_complexity + chr13:52765297-52765411 chr13 52765297 52765411 L2a LINE - chr13:52765880-52765965 chr13 52765880 52765965 MIRb SINE - chr13:52765966-52766106 chr13 52765966 52766106 MER5A DNA - chr13:52767740-52767860 chr13 52767740 52767860 L2c LINE + chr13:52768197-52768261 chr13 52768197 52768261 MIR3 SINE + chr1:35318064-35318086 chr1 35318064 35318086 (A)n Simple_repeat + chr13:54683165-54683205 chr13 54683165 54683205 GA-rich Low_complexity + chr13:54684177-54684263 chr13 54684177 54684263 L2c LINE + chr13:54686129-54686196 chr13 54686129 54686196 L1MA9 LINE + chr13:54687995-54688023 chr13 54687995 54688023 (TG)n Simple_repeat + chr13:54688022-54688060 chr13 54688022 54688060 (GA)n Simple_repeat + chr13:54689370-54689663 chr13 54689370 54689663 L2 LINE - chr13:54689810-54689908 chr13 54689810 54689908 MIR SINE - chr13:54691259-54691435 chr13 54691259 54691435 AluJb SINE + chr13:54692315-54692564 chr13 54692315 54692564 MamTip1 DNA + chr13:54696258-54696330 chr13 54696258 54696330 LTR91 LTR + chr13:54696528-54696820 chr13 54696528 54696820 AluSc SINE - chr13:54698673-54698799 chr13 54698673 54698799 MER94 DNA - chr13:54700307-54700528 chr13 54700307 54700528 MER3 DNA - chr13:54700533-54700697 chr13 54700533 54700697 L2 LINE + chr13:54842276-54842659 chr13 54842276 54842659 LTR7 LTR + chr13:54909410-54909474 chr13 54909410 54909474 L2d LINE - chr13:54914601-54914626 chr13 54914601 54914626 (AT)n Simple_repeat + chr13:54914626-54914661 chr13 54914626 54914661 (AC)n Simple_repeat + chr13:54915197-54915241 chr13 54915197 54915241 (CTATTC)n Simple_repeat + chr13:54916197-54916238 chr13 54916197 54916238 MIRb SINE + chr13:54916471-54916543 chr13 54916471 54916543 U6 snRNA + chr13:54922437-54922482 chr13 54922437 54922482 (TTTTATA)n Simple_repeat + chr13:54922904-54922967 chr13 54922904 54922967 A-rich Low_complexity + chr13:54927550-54927662 chr13 54927550 54927662 FLAM_A SINE + chr13:55014796-55014813 chr13 55014796 55014813 (T)n Simple_repeat + chr1:35581547-35581854 chr1 35581547 35581854 AluJr SINE + chr1:35582060-35582357 chr1 35582060 35582357 AluSq2 SINE - chr1:35583259-35583556 chr1 35583259 35583556 AluSp SINE + chr13:56107450-56107515 chr13 56107450 56107515 GA-rich Low_complexity + chr13:56108546-56108571 chr13 56108546 56108571 (TG)n Simple_repeat + chr13:56109185-56109611 chr13 56109185 56109611 LTR80B LTR - chr13:56110767-56111127 chr13 56110767 56111127 Tigger1a_Art DNA - chr13:56116019-56116303 chr13 56116019 56116303 MLT1A0 LTR - chr13:56119651-56120030 chr13 56119651 56120030 THE1D LTR - chr13:56120345-56120366 chr13 56120345 56120366 (T)n Simple_repeat + chr13:56120511-56120549 chr13 56120511 56120549 GA-rich Low_complexity + chr13:56122745-56123171 chr13 56122745 56123171 LTR23 LTR - chr13:56127523-56127904 chr13 56127523 56127904 LTR16A1 LTR - chr13:56128240-56128268 chr13 56128240 56128268 A-rich Low_complexity + chr13:56128403-56128594 chr13 56128403 56128594 MER53 DNA - chr13:56128699-56128763 chr13 56128699 56128763 A-rich Low_complexity + chr13:56128869-56129047 chr13 56128869 56129047 UCON12A Unknown + chr13:56129597-56129654 chr13 56129597 56129654 (AGTTTTT)n Simple_repeat + chr13:56129916-56129957 chr13 56129916 56129957 AluYj4 SINE - chr13:56134548-56134762 chr13 56134548 56134762 AluJr SINE - chr13:56134921-56134976 chr13 56134921 56134976 (ATAT)n Simple_repeat + chr13:56135213-56135405 chr13 56135213 56135405 L1ME5 LINE + chr13:56136249-56136365 chr13 56136249 56136365 MIRc SINE + chr13:56137049-56137158 chr13 56137049 56137158 Penelope1_Vert LINE + chr13:56138231-56138279 chr13 56138231 56138279 Alu SINE + chr13:56138517-56138552 chr13 56138517 56138552 (TTCT)n Simple_repeat + chr13:56138566-56138884 chr13 56138566 56138884 L1MDb LINE - chr13:56138956-56138988 chr13 56138956 56138988 (AATATA)n Simple_repeat + chr13:56138988-56139041 chr13 56138988 56139041 A-rich Low_complexity + chr13:56142081-56142274 chr13 56142081 56142274 L3 LINE - chr13:56142401-56142597 chr13 56142401 56142597 MER58C DNA - chr13:56142866-56142895 chr13 56142866 56142895 (TTA)n Simple_repeat + chr13:56142897-56143042 chr13 56142897 56143042 MER58B DNA - chr13:56144094-56144263 chr13 56144094 56144263 MER3 DNA - chr13:56144657-56144795 chr13 56144657 56144795 MER5A DNA - chr13:56145303-56146174 chr13 56145303 56146174 MER67D LTR - chr13:56145583-56145920 chr13 56145583 56145920 THE1B LTR + chr13:56147910-56147942 chr13 56147910 56147942 (ATACAC)n Simple_repeat + chr13:56148847-56150145 chr13 56148847 56150145 Charlie21a DNA - chr13:56149762-56150041 chr13 56149762 56150041 L1MA8 LINE - chr13:56150312-56158444 chr13 56150312 56158444 L1M2b LINE + chr13:56152362-56158222 chr13 56152362 56158222 HERVH-int LTR - chr13:56182126-56182176 chr13 56182126 56182176 L3b LINE + chr13:56190645-56190672 chr13 56190645 56190672 (AGAG)n Simple_repeat + chr13:56214981-56215001 chr13 56214981 56215001 (CA)n Simple_repeat + chr13:56224563-56224592 chr13 56224563 56224592 (T)n Simple_repeat + chr13:56226355-56226424 chr13 56226355 56226424 MIR1_Amn SINE + chr13:56227239-56227270 chr13 56227239 56227270 (AAAT)n Simple_repeat + chr13:56227323-56227369 chr13 56227323 56227369 A-rich Low_complexity + chr13:56235582-56235810 chr13 56235582 56235810 LTR1F2 LTR + chr13:56237539-56237566 chr13 56237539 56237566 (TC)n Simple_repeat + chr13:56240453-56240533 chr13 56240453 56240533 MER5B DNA + chr13:56252472-56252516 chr13 56252472 56252516 A-rich Low_complexity + chr13:56298537-56298548 chr13 56298537 56298548 (AT)n Simple_repeat + chr1:35642188-35642491 chr1 35642188 35642491 AluY SINE + chr1:35642534-35642829 chr1 35642534 35642829 AluSp SINE + chr1:35643022-35643236 chr1 35643022 35643236 AluJr SINE - chr1:35644485-35644502 chr1 35644485 35644502 (A)n Simple_repeat + chr13:57459497-57459734 chr13 57459497 57459734 7SK RNA - chr1:3658764-3658903 chr1 3658764 3658903 MLT1H2 LTR + chr1:3661063-3661093 chr1 3661063 3661093 (ATAA)n Simple_repeat + chr13:76123882-76123925 chr13 76123882 76123925 (GGC)n Simple_repeat + chr13:80908562-80908716 chr13 80908562 80908716 MER5A DNA - chr13:80909790-80909812 chr13 80909790 80909812 (A)n Simple_repeat + chr13:86249459-86249532 chr13 86249459 86249532 MADE1 DNA + chr13:86344982-86345001 chr13 86344982 86345001 (TG)n Simple_repeat + chr13:86376673-86376722 chr13 86376673 86376722 A-rich Low_complexity + chr1:38732750-38732757 chr1 38732750 38732757 (TA)n Simple_repeat + chr13:92000414-92000450 chr13 92000414 92000450 GA-rich Low_complexity + chr13:92000450-92000469 chr13 92000450 92000469 (GGCGG)n Simple_repeat + chr13:92000665-92000682 chr13 92000665 92000682 (GCG)n Simple_repeat + chr13:92001210-92001270 chr13 92001210 92001270 (CGC)n Simple_repeat + chr13:92005080-92005390 chr13 92005080 92005390 AluSx SINE + chr13:92006925-92007009 chr13 92006925 92007009 MIRb SINE - chr13:92007517-92007837 chr13 92007517 92007837 MER2B DNA - chr13:92009207-92009580 chr13 92009207 92009580 L2a LINE + chr13:92010945-92012686 chr13 92010945 92012686 L2c LINE + chr13:92011099-92011804 chr13 92011099 92011804 MLT1D LTR - chr13:92011128-92011386 chr13 92011128 92011386 AluSg SINE - chr13:92014389-92014464 chr13 92014389 92014464 X2b_DNA DNA + chr13:92015939-92016122 chr13 92015939 92016122 MIR SINE - chr1:39326580-39326628 chr1 39326580 39326628 MIR3 SINE - chr13:93876913-93876946 chr13 93876913 93876946 (TTCCA)n Simple_repeat + chr1:39472105-39472253 chr1 39472105 39472253 LTR104_Mam LTR + chr1:39472944-39473190 chr1 39472944 39473190 MIRb SINE + chr13:99851156-99851255 chr13 99851156 99851255 Charlie1 DNA - chr1:40020550-40020570 chr1 40020550 40020570 (AATT)n Simple_repeat + chr1:40021624-40021651 chr1 40021624 40021651 (AATAA)n Simple_repeat + chr14:101295933-101295976 chr14 101295933 101295976 L2b LINE + chr14:101314259-101314299 chr14 101314259 101314299 GA-rich Low_complexity + chr14:101314402-101314435 chr14 101314402 101314435 (AG)n Simple_repeat + chr14:101315472-101315496 chr14 101315472 101315496 (AATA)n Simple_repeat + chr14:101316508-101316537 chr14 101316508 101316537 (TGAG)n Simple_repeat + chr14:101352551-101352568 chr14 101352551 101352568 (A)n Simple_repeat + chr14:101352922-101352942 chr14 101352922 101352942 (ATC)n Simple_repeat + chr14:101380082-101380102 chr14 101380082 101380102 (AC)n Simple_repeat + chr14:101411927-101411971 chr14 101411927 101411971 (TGAA)n Simple_repeat + chr14:101413299-101413337 chr14 101413299 101413337 (TC)n Simple_repeat + chr14:101427836-101427850 chr14 101427836 101427850 (TAAT)n Simple_repeat + chr14:101440133-101440157 chr14 101440133 101440157 (AATA)n Simple_repeat + chr14:102776963-102777193 chr14 102776963 102777193 AluSg SINE - chr14:102971900-102972069 chr14 102971900 102972069 MIRc SINE - chr14:103048863-103049514 chr14 103048863 103049514 7SLRNA srpRNA - chr1:41152822-41152859 chr1 41152822 41152859 L1MA4 LINE + chr1:41154620-41154647 chr1 41154620 41154647 (TTTGT)n Simple_repeat + chr1:41155411-41155696 chr1 41155411 41155696 MamRep38 DNA - chr1:41156038-41156107 chr1 41156038 41156107 AluJb SINE - chr1:41156116-41156251 chr1 41156116 41156251 MIRc SINE - chr1:41156589-41156757 chr1 41156589 41156757 MIRc SINE + chr14:20776489-20776794 chr14 20776489 20776794 MER2 DNA - chr14:20930460-20930479 chr14 20930460 20930479 (A)n Simple_repeat + chr14:21081557-21081631 chr14 21081557 21081631 tRNA-Pro-CCY tRNA - chr14:21093528-21093610 chr14 21093528 21093610 tRNA-Leu-CTA_ tRNA + chr14:21101164-21101237 chr14 21101164 21101237 tRNA-Pro-CCA tRNA + chr14:21151431-21151520 chr14 21151431 21151520 tRNA-Tyr-TAC tRNA + chr14:21673025-21673275 chr14 21673025 21673275 AluSx3 SINE + chr14:21673677-21673765 chr14 21673677 21673765 MIRb SINE + chr14:21674217-21674344 chr14 21674217 21674344 MER3 DNA - chr14:21674672-21674840 chr14 21674672 21674840 MER5B DNA - chr14:21677045-21677111 chr14 21677045 21677111 MADE1 DNA - chr14:21677170-21677270 chr14 21677170 21677270 MER2 DNA + chr14:24502960-24503034 chr14 24502960 24503034 AluSq4 SINE - chr14:24504909-24504959 chr14 24504909 24504959 L2c LINE - chr14:24745796-24745850 chr14 24745796 24745850 MER3 DNA + chr14:24746012-24746081 chr14 24746012 24746081 L1ME3A LINE - chr14:24749992-24750017 chr14 24749992 24750017 (GAAT)n Simple_repeat + chr14:24752086-24752120 chr14 24752086 24752120 (CTGAGC)n Simple_repeat + chr14:24753458-24753604 chr14 24753458 24753604 L2d LINE + chr14:24756885-24756908 chr14 24756885 24756908 (AAAC)n Simple_repeat + chr14:24912223-24912257 chr14 24912223 24912257 (AAACC)n Simple_repeat + chr14:31563384-31563467 chr14 31563384 31563467 FAM SINE - chr1:43169360-43169437 chr1 43169360 43169437 Tigger5b DNA - chr14:32671250-32671356 chr14 32671250 32671356 U6 snRNA + chr14:32672369-32672475 chr14 32672369 32672475 U6 snRNA - chr1:43425161-43425266 chr1 43425161 43425266 L2c LINE + chr1:43426804-43426843 chr1 43426804 43426843 (TGAA)n Simple_repeat + chr1:43428482-43428519 chr1 43428482 43428519 (GGT)n Simple_repeat + chr1:43441405-43441444 chr1 43441405 43441444 (ATC)n Simple_repeat + chr1:43444620-43444649 chr1 43444620 43444649 (CCCACA)n Simple_repeat + chr14:35015919-35016083 chr14 35015919 35016083 U1 snRNA + chr14:35025431-35025595 chr14 35025431 35025595 U1 snRNA - chr14:35344883-35344912 chr14 35344883 35344912 A-rich Low_complexity + chr14:35434252-35434366 chr14 35434252 35434366 MIR3 SINE - chr14:35437438-35437604 chr14 35437438 35437604 FAM SINE - chr14:35440749-35440806 chr14 35440749 35440806 L2c LINE + chr14:35449986-35450076 chr14 35449986 35450076 L2 LINE - chr14:35450380-35450432 chr14 35450380 35450432 (AC)n Simple_repeat + chr14:35450590-35450659 chr14 35450590 35450659 AluJb SINE - chr14:35744194-35744433 chr14 35744194 35744433 L1ME3 LINE + chr14:35744885-35745018 chr14 35744885 35745018 FLAM_C SINE + chr14:35745045-35745207 chr14 35745045 35745207 MIR3 SINE - chr14:38490714-38490738 chr14 38490714 38490738 (T)n Simple_repeat + chr14:38517503-38517523 chr14 38517503 38517523 (AAAC)n Simple_repeat + chr14:38536048-38536089 chr14 38536048 38536089 (TA)n Simple_repeat + chr14:38537300-38537340 chr14 38537300 38537340 (TTTACTT)n Simple_repeat + chr14:38538846-38538906 chr14 38538846 38538906 (TACA)n Simple_repeat + chr14:38542958-38542990 chr14 38542958 38542990 A-rich Low_complexity + chr14:38547854-38547873 chr14 38547854 38547873 (A)n Simple_repeat + chr14:38565934-38565964 chr14 38565934 38565964 (GT)n Simple_repeat + chr14:38568833-38568851 chr14 38568833 38568851 (AAGA)n Simple_repeat + chr14:38577271-38577302 chr14 38577271 38577302 (TTG)n Simple_repeat + chr14:38581870-38581892 chr14 38581870 38581892 (ATTC)n Simple_repeat + chr14:38591224-38591265 chr14 38591224 38591265 (TTTTCA)n Simple_repeat + chr14:38591278-38591307 chr14 38591278 38591307 (TG)n Simple_repeat + chr14:38593852-38593878 chr14 38593852 38593878 (AGG)n Simple_repeat + chr14:38601743-38601772 chr14 38601743 38601772 (AC)n Simple_repeat + chr14:38602571-38602591 chr14 38602571 38602591 (CAA)n Simple_repeat + chr14:38606474-38606506 chr14 38606474 38606506 (AACA)n Simple_repeat + chr14:38612077-38612110 chr14 38612077 38612110 (TG)n Simple_repeat + chr14:38620423-38620454 chr14 38620423 38620454 (TG)n Simple_repeat + chr14:38620690-38620743 chr14 38620690 38620743 (AT)n Simple_repeat + chr14:38626039-38626081 chr14 38626039 38626081 GA-rich Low_complexity + chr14:38626822-38626866 chr14 38626822 38626866 (AC)n Simple_repeat + chr14:38628520-38628601 chr14 38628520 38628601 MER135 DNA + chr14:38631293-38631320 chr14 38631293 38631320 (TTTGT)n Simple_repeat + chr14:38634448-38634475 chr14 38634448 38634475 (A)n Simple_repeat + chr14:38637445-38637498 chr14 38637445 38637498 (CA)n Simple_repeat + chr14:38659842-38665730 chr14 38659842 38665730 HERVH-int LTR + chr14:39902397-39902426 chr14 39902397 39902426 (T)n Simple_repeat + chr14:39902969-39903005 chr14 39902969 39903005 LTR42 LTR + chr14:39914547-39914588 chr14 39914547 39914588 (TTTTCA)n Simple_repeat + chr14:39918139-39918181 chr14 39918139 39918181 (TG)n Simple_repeat + chr14:39921813-39921875 chr14 39921813 39921875 A-rich Low_complexity + chr14:40789293-40789318 chr14 40789293 40789318 (CAAA)n Simple_repeat + chr14:42055314-42055351 chr14 42055314 42055351 (AC)n Simple_repeat + chr14:42064157-42064192 chr14 42064157 42064192 (GAACCA)n Simple_repeat + chr14:42064846-42064871 chr14 42064846 42064871 (AAAT)n Simple_repeat + chr14:42070607-42070656 chr14 42070607 42070656 (AATA)n Simple_repeat + chr14:50042856-50043120 chr14 50042856 50043120 AluJr SINE - chr14:50053297-50053597 chr14 50053297 50053597 7SLRNA srpRNA + chr14:50084980-50085090 chr14 50084980 50085090 MER3 DNA + chr14:50320332-50320632 chr14 50320332 50320632 7SLRNA srpRNA - chr14:50320834-50322652 chr14 50320834 50322652 L1MA9 LINE + chr14:50321479-50321756 chr14 50321479 50321756 L1PA13 LINE + chr14:50321881-50322193 chr14 50321881 50322193 AluJo SINE + chr14:50322197-50322485 chr14 50322197 50322485 AluSq2 SINE + chr14:50322485-50322621 chr14 50322485 50322621 (AT)n Simple_repeat + chr14:50322657-50322876 chr14 50322657 50322876 MSTD LTR - chr14:50323186-50323300 chr14 50323186 50323300 L3 LINE + chr14:50323300-50323550 chr14 50323300 50323550 L1ME3B LINE + chr14:50323554-50323858 chr14 50323554 50323858 AluJb SINE + chr14:50323878-50324187 chr14 50323878 50324187 AluSx SINE + chr14:50324207-50324708 chr14 50324207 50324708 MLT1H1 LTR + chr14:50324754-50325059 chr14 50324754 50325059 AluSg4 SINE + chr14:50325072-50325449 chr14 50325072 50325449 MER57C2 LTR + chr14:50325486-50325646 chr14 50325486 50325646 FRAM SINE + chr14:50325704-50325987 chr14 50325704 50325987 AluSg SINE - chr14:50326160-50326470 chr14 50326160 50326470 AluSp SINE - chr14:50326510-50326552 chr14 50326510 50326552 A-rich Low_complexity + chr14:50326561-50326584 chr14 50326561 50326584 (CA)n Simple_repeat + chr14:50326681-50327688 chr14 50326681 50327688 AluSx SINE + chr14:50326795-50327308 chr14 50326795 50327308 MLT1D LTR - chr14:50326884-50327169 chr14 50326884 50327169 AluJb SINE - chr14:50327808-50327973 chr14 50327808 50327973 L3 LINE + chr14:50329267-50329567 chr14 50329267 50329567 7SLRNA srpRNA - chr14:50535285-50535530 chr14 50535285 50535530 7SK RNA + chr14:51730808-51730875 chr14 51730808 51730875 MIR3 SINE + chr14:51730924-51730967 chr14 51730924 51730967 L2d LINE + chr1:45195978-45196044 chr1 45195978 45196044 (TTTTTAG)n Simple_repeat + chr1:45196726-45196842 chr1 45196726 45196842 U5 snRNA - chr1:45285226-45285336 chr1 45285226 45285336 AluSx3 SINE - chr1:45285340-45285497 chr1 45285340 45285497 AluSg SINE - chr14:54892507-54892802 chr14 54892507 54892802 L3 LINE + chr14:57760428-57760469 chr14 57760428 57760469 (AT)n Simple_repeat + chr14:57764288-57764314 chr14 57764288 57764314 (TG)n Simple_repeat + chr14:58467090-58467128 chr14 58467090 58467128 (TCCTTTC)n Simple_repeat + chr14:58759016-58759105 chr14 58759016 58759105 U6 snRNA - chr14:58759261-58759454 chr14 58759261 58759454 AluJo SINE + chr14:58759864-58759893 chr14 58759864 58759893 A-rich Low_complexity + chr14:58759960-58760254 chr14 58759960 58760254 AluSp SINE - chr14:58760428-58760483 chr14 58760428 58760483 (ATACAT)n Simple_repeat + chr14:58760502-58760759 chr14 58760502 58760759 AluJb SINE - chr14:58760772-58760826 chr14 58760772 58760826 L1M5 LINE + chr14:58760861-58762718 chr14 58760861 58762718 HSMAR1 DNA - chr14:58761802-58762095 chr14 58761802 58762095 AluSg SINE + chr14:58762259-58762557 chr14 58762259 58762557 AluSc8 SINE + chr14:58763187-58763267 chr14 58763187 58763267 Alu SINE + chr14:61191164-61191199 chr14 61191164 61191199 (CCTCC)n Simple_repeat + chr14:62162153-62162211 chr14 62162153 62162211 (CCCTCC)n Simple_repeat + chr1:46828815-46828950 chr1 46828815 46828950 MamTip2 DNA - chr1:46829203-46829555 chr1 46829203 46829555 L1ME3F LINE + chr14:69846554-69846574 chr14 69846554 69846574 (CTG)n Simple_repeat + chr14:70036467-70036491 chr14 70036467 70036491 (GT)n Simple_repeat + chr14:70749463-70749494 chr14 70749463 70749494 (AAC)n Simple_repeat + chr14:70755839-70755867 chr14 70755839 70755867 (TAAAA)n Simple_repeat + chr14:70834559-70834677 chr14 70834559 70834677 L2c LINE + chr14:70835127-70835258 chr14 70835127 70835258 MIR3 SINE + chr14:70835408-70835434 chr14 70835408 70835434 (TTG)n Simple_repeat + chr14:70835513-70835667 chr14 70835513 70835667 MER5B DNA - chr14:70835687-70836184 chr14 70835687 70836184 MER5A DNA - chr14:70835823-70836111 chr14 70835823 70836111 AluJb SINE - chr14:70836184-70836390 chr14 70836184 70836390 MIRb SINE + chr14:70837290-70837513 chr14 70837290 70837513 L2d2 LINE + chr14:71277400-71277459 chr14 71277400 71277459 (TCTTT)n Simple_repeat + chr14:71278653-71278765 chr14 71278653 71278765 L1ME4a LINE + chr14:71279285-71279370 chr14 71279285 71279370 L2b LINE + chr14:71279864-71280069 chr14 71279864 71280069 MIRb SINE + chr14:71280164-71280206 chr14 71280164 71280206 GA-rich Low_complexity + chr14:71280469-71280613 chr14 71280469 71280613 GA-rich Low_complexity + chr14:71280617-71280769 chr14 71280617 71280769 MIR SINE + chr14:73429678-73429752 chr14 73429678 73429752 tRNA-Cys-TGY tRNA + chr14:73588224-73588287 chr14 73588224 73588287 MARE4 DNA - chr14:74942268-74942289 chr14 74942268 74942289 (TC)n Simple_repeat + chr14:75204163-75204273 chr14 75204163 75204273 MIR SINE + chr14:75478957-75478979 chr14 75478957 75478979 (AAAC)n Simple_repeat + chr14:77251860-77251894 chr14 77251860 77251894 (CCCCAG)n Simple_repeat + chr14:77251985-77252119 chr14 77251985 77252119 MIRc SINE + chr14:77394464-77394518 chr14 77394464 77394518 MIR3 SINE - chr14:89445441-89445514 chr14 89445441 89445514 tRNA-Ala-GCY tRNA + chr14:90741131-90741183 chr14 90741131 90741183 (AC)n Simple_repeat + chr14:91923920-91923954 chr14 91923920 91923954 A-rich Low_complexity + chr14:92630837-92630879 chr14 92630837 92630879 5S rRNA - chr14:95999998-96000082 chr14 95999998 96000082 L2a LINE - chr14:96000285-96000343 chr14 96000285 96000343 L2b LINE + chr14:96000437-96000602 chr14 96000437 96000602 FLAM_C SINE + chr14:96343425-96343480 chr14 96343425 96343480 (CTCCGG)n Simple_repeat + chr14:96346337-96346467 chr14 96346337 96346467 MIR3 SINE + chr14:96350122-96350311 chr14 96350122 96350311 MER5A DNA + chr14:96350384-96350673 chr14 96350384 96350673 L2 LINE + chr14:96353014-96353053 chr14 96353014 96353053 MIR3 SINE - chr14:96354398-96354530 chr14 96354398 96354530 MIRb SINE + chr14:96354553-96354694 chr14 96354553 96354694 MIR SINE - chr14:96355470-96355521 chr14 96355470 96355521 (CCCCCT)n Simple_repeat + chr14:96355763-96355825 chr14 96355763 96355825 (CCCCCT)n Simple_repeat + chr14:96356290-96356314 chr14 96356290 96356314 (A)n Simple_repeat + chr14:96356361-96356483 chr14 96356361 96356483 FAM SINE - chr14:96357813-96357967 chr14 96357813 96357967 MIRc SINE - chr14:96359085-96359141 chr14 96359085 96359141 MIRb SINE + chr14:96360021-96360159 chr14 96360021 96360159 MER5B DNA - chr14:96361736-96361788 chr14 96361736 96361788 (TG)n Simple_repeat + chr14:96362280-96362391 chr14 96362280 96362391 L2a LINE + chr14:96362394-96362527 chr14 96362394 96362527 MIRc SINE - chr14:96364271-96364295 chr14 96364271 96364295 (TTGTT)n Simple_repeat + chr14:96366918-96367027 chr14 96366918 96367027 MIR SINE + chr14:96367497-96367701 chr14 96367497 96367701 L3 LINE + chr14:96367738-96367819 chr14 96367738 96367819 L2b LINE - chr14:96367849-96368019 chr14 96367849 96368019 MIRc SINE + chr14:96369349-96369447 chr14 96369349 96369447 MIRb SINE - chr14:96369456-96369671 chr14 96369456 96369671 MIR SINE + chr14:96369868-96369916 chr14 96369868 96369916 MIRb SINE - chr14:96375046-96375219 chr14 96375046 96375219 MIR3 SINE - chr14:96376028-96376184 chr14 96376028 96376184 L2b LINE - chr14:96376413-96376490 chr14 96376413 96376490 L2a LINE + chr14:96376529-96376750 chr14 96376529 96376750 L2a LINE + chr14:96376571-96376699 chr14 96376571 96376699 FLAM_C SINE + chr14:96377325-96377416 chr14 96377325 96377416 L1ME3D LINE - chr14:96377427-96377809 chr14 96377427 96377809 L2c LINE + chr14:96378451-96378473 chr14 96378451 96378473 (TTTA)n Simple_repeat + chr14:96380994-96381040 chr14 96380994 96381040 (TCA)n Simple_repeat + chr14:96381086-96381236 chr14 96381086 96381236 MIRb SINE - chr14:96385247-96385402 chr14 96385247 96385402 L2a LINE - chr14:96385540-96385681 chr14 96385540 96385681 L1M5 LINE + chr14:96385763-96386065 chr14 96385763 96386065 AluJo SINE + chr14:96390059-96390087 chr14 96390059 96390087 (TC)n Simple_repeat + chr14:96390813-96391150 chr14 96390813 96391150 THE1B LTR - chr14:96391150-96391342 chr14 96391150 96391342 MamTip2 DNA + chr14:96391412-96391623 chr14 96391412 96391623 MIRb SINE - chr14:96968023-96968133 chr14 96968023 96968133 L2c LINE - chr15:102502865-102503000 chr15 102502865 102503000 MIRb SINE + chr15:102503148-102503330 chr15 102503148 102503330 MIRb SINE + chr15:102504040-102504580 chr15 102504040 102504580 L2c LINE + chr15:102504750-102504807 chr15 102504750 102504807 MIR1_Amn SINE - chr15:102506715-102507360 chr15 102506715 102507360 L2a LINE - chr15:102506962-102507076 chr15 102506962 102507076 MIR SINE - chr15:102507823-102508038 chr15 102507823 102508038 MIR SINE + chr15:20640604-20640633 chr15 20640604 20640633 (TACA)n Simple_repeat + chr15:20640736-20640875 chr15 20640736 20640875 MER5A1 DNA - chr15:20648499-20648532 chr15 20648499 20648532 (CACACC)n Simple_repeat + chr15:20653162-20653249 chr15 20653162 20653249 (AT)n Simple_repeat + chr15:20653248-20653291 chr15 20653248 20653291 (AGAC)n Simple_repeat + chr15:20656290-20656353 chr15 20656290 20656353 L1M4 LINE - chr15:20669667-20669780 chr15 20669667 20669780 AluYj4 SINE + chr15:20670137-20670635 chr15 20670137 20670635 L1MC5 LINE + chr15:20670155-20670458 chr15 20670155 20670458 AluSp SINE - chr15:23111168-23111190 chr15 23111168 23111190 (GT)n Simple_repeat + chr15:23112440-23112481 chr15 23112440 23112481 AluSx1 SINE + chr15:23113500-23113517 chr15 23113500 23113517 (A)n Simple_repeat + chr15:23291492-23291748 chr15 23291492 23291748 AluYm1 SINE + chr15:23296035-23296340 chr15 23296035 23296340 AluJb SINE + chr15:23308066-23308095 chr15 23308066 23308095 (TACA)n Simple_repeat + chr15:23308198-23308337 chr15 23308198 23308337 MER5A1 DNA - chr15:23313517-23313630 chr15 23313517 23313630 FLAM_A SINE - chr15:23315911-23315944 chr15 23315911 23315944 (CACACC)n Simple_repeat + chr15:23320586-23320657 chr15 23320586 23320657 (AT)n Simple_repeat + chr15:23320658-23320697 chr15 23320658 23320697 (AGAC)n Simple_repeat + chr15:23323693-23323756 chr15 23323693 23323756 L1M4 LINE - chr15:23337071-23337184 chr15 23337071 23337184 AluYj4 SINE + chr15:23337541-23338039 chr15 23337541 23338039 L1MC5 LINE + chr15:23337559-23337862 chr15 23337559 23337862 AluSp SINE - chr15:23376783-23377013 chr15 23376783 23377013 AluSp SINE - chr15:23392672-23392686 chr15 23392672 23392686 (TGTAT)n Simple_repeat + chr15:23392995-23393018 chr15 23392995 23393018 (TGTAT)n Simple_repeat + chr15:23393322-23393336 chr15 23393322 23393336 (TGTAT)n Simple_repeat + chr15:23424504-23424522 chr15 23424504 23424522 (TTA)n Simple_repeat + chr15:23431635-23431661 chr15 23431635 23431661 (TA)n Simple_repeat + chr15:23589683-23589704 chr15 23589683 23589704 (TTA)n Simple_repeat + chr15:23596437-23596455 chr15 23596437 23596455 (TATAAC)n Simple_repeat + chr15:24414447-24414479 chr15 24414447 24414479 (CCCTGC)n Simple_repeat + chr15:24508232-24508298 chr15 24508232 24508298 (TA)n Simple_repeat + chr15:24508313-24508477 chr15 24508313 24508477 L1MCa LINE + chr15:24511136-24511171 chr15 24511136 24511171 (AAC)n Simple_repeat + chr15:24512631-24512671 chr15 24512631 24512671 (TG)n Simple_repeat + chr15:24512671-24512688 chr15 24512671 24512688 (AG)n Simple_repeat + chr15:24588005-24588045 chr15 24588005 24588045 (CCCCCA)n Simple_repeat + chr15:24588424-24588462 chr15 24588424 24588462 GA-rich Low_complexity + chr15:24596497-24596538 chr15 24596497 24596538 (TTTTGA)n Simple_repeat + chr15:24604295-24604330 chr15 24604295 24604330 (TAGA)n Simple_repeat + chr15:24617137-24617165 chr15 24617137 24617165 (AAC)n Simple_repeat + chr15:24618626-24618668 chr15 24618626 24618668 (TG)n Simple_repeat + chr15:24630402-24630440 chr15 24630402 24630440 GA-rich Low_complexity + chr15:24634425-24634494 chr15 24634425 24634494 A-rich Low_complexity + chr15:24650742-24650783 chr15 24650742 24650783 (TTTTGA)n Simple_repeat + chr15:24653073-24653115 chr15 24653073 24653115 (GT)n Simple_repeat + chr15:24658538-24658615 chr15 24658538 24658615 (GATA)n Simple_repeat + chr15:24674288-24674357 chr15 24674288 24674357 (TA)n Simple_repeat + chr15:24677164-24677198 chr15 24677164 24677198 (AAC)n Simple_repeat + chr15:24678643-24678683 chr15 24678643 24678683 (GT)n Simple_repeat + chr15:24710290-24710315 chr15 24710290 24710315 (ATTT)n Simple_repeat + chr15:24712116-24712174 chr15 24712116 24712174 (GATA)n Simple_repeat + chr15:24719894-24719936 chr15 24719894 24719936 (T)n Simple_repeat + chr15:24729210-24729246 chr15 24729210 24729246 (TG)n Simple_repeat + chr15:24729246-24729273 chr15 24729246 24729273 (AG)n Simple_repeat + chr15:24738665-24738716 chr15 24738665 24738716 MLT1F2 LTR - chr15:24740069-24740132 chr15 24740069 24740132 MLT1F2 LTR + chr15:24765447-24765477 chr15 24765447 24765477 (TTTG)n Simple_repeat + chr15:24775909-24775983 chr15 24775909 24775983 L1PA15 LINE - chr15:24827177-24827232 chr15 24827177 24827232 (AC)n Simple_repeat + chr15:24830803-24830813 chr15 24830803 24830813 (CTTC)n Simple_repeat + chr15:25227627-25227733 chr15 25227627 25227733 L2b LINE + chr15:25227758-25228027 chr15 25227758 25228027 AluJr SINE - chr15:25228274-25228568 chr15 25228274 25228568 AluSx1 SINE + chr15:25228656-25228952 chr15 25228656 25228952 AluSx SINE + chr15:25229921-25229950 chr15 25229921 25229950 (CT)n Simple_repeat + chr15:25229950-25229989 chr15 25229950 25229989 (TG)n Simple_repeat + chr15:25230532-25230760 chr15 25230532 25230760 AluSz6 SINE - chr15:25231993-25232041 chr15 25231993 25232041 (TGTGCGTG)n Simple_repeat + chr15:25232623-25232787 chr15 25232623 25232787 MER5A DNA - chr15:25233147-25233180 chr15 25233147 25233180 A-rich Low_complexity + chr15:25238126-25238148 chr15 25238126 25238148 (TATC)n Simple_repeat + chr15:25238142-25238172 chr15 25238142 25238172 (TAGA)n Simple_repeat + chr15:25239519-25239717 chr15 25239519 25239717 MER8 DNA + chr15:25240182-25240473 chr15 25240182 25240473 AluSx4 SINE + chr15:25242141-25242446 chr15 25242141 25242446 AluSq2 SINE + chr15:25244383-25244973 chr15 25244383 25244973 PABL_A LTR - chr15:25245647-25245725 chr15 25245647 25245725 MLT1G3 LTR - chr15:25245915-25245952 chr15 25245915 25245952 LFSINE_Vert SINE - chr15:25246012-25246315 chr15 25246012 25246315 AluSq2 SINE + chr15:25247054-25247081 chr15 25247054 25247081 (TGTG)n Simple_repeat + chr15:25247962-25248051 chr15 25247962 25248051 L1M5 LINE - chr15:25248118-25248159 chr15 25248118 25248159 (TTATTTG)n Simple_repeat + chr15:25248795-25253893 chr15 25248795 25253893 L1M4c LINE - chr15:25249409-25249675 chr15 25249409 25249675 AluSz SINE - chr15:25249675-25249952 chr15 25249675 25249952 L1M3 LINE - chr15:25249969-25250062 chr15 25249969 25250062 L1M3 LINE - chr15:25250102-25250404 chr15 25250102 25250404 AluY SINE - chr15:25251221-25251502 chr15 25251221 25251502 AluSg SINE - chr15:25251856-25252141 chr15 25251856 25252141 AluYm1 SINE - chr15:25252298-25252601 chr15 25252298 25252601 AluJr SINE + chr15:25253893-25254193 chr15 25253893 25254193 AluJo SINE - chr15:25254273-25254924 chr15 25254273 25254924 L1MB4 LINE - chr15:25254934-25257028 chr15 25254934 25257028 L1MC5a LINE - chr15:25255204-25255473 chr15 25255204 25255473 AluJo SINE + chr15:25257264-25257559 chr15 25257264 25257559 AluSz SINE - chr15:25257569-25257605 chr15 25257569 25257605 (TATTTTA)n Simple_repeat + chr15:25257605-25257895 chr15 25257605 25257895 AluSp SINE - chr15:25257925-25257952 chr15 25257925 25257952 (TATT)n Simple_repeat + chr15:25257953-25258238 chr15 25257953 25258238 AluSx SINE - chr15:25258697-25258804 chr15 25258697 25258804 BC200 scRNA + chr15:25259981-25260255 chr15 25259981 25260255 L1MC LINE + chr15:25260801-25261110 chr15 25260801 25261110 AluSx SINE + chr15:25261632-25261654 chr15 25261632 25261654 (ATGA)n Simple_repeat + chr15:25262271-25262556 chr15 25262271 25262556 AluSg SINE + chr15:25267138-25267308 chr15 25267138 25267308 MER58A DNA - chr15:25268128-25268422 chr15 25268128 25268422 AluSx SINE + chr15:25268668-25269558 chr15 25268668 25269558 L1MC4 LINE - chr15:25271937-25272423 chr15 25271937 25272423 L2 LINE - chr15:25273114-25273411 chr15 25273114 25273411 AluSq SINE + chr15:25275992-25278038 chr15 25275992 25278038 L1MEf LINE - chr15:25276738-25276998 chr15 25276738 25276998 AluJr SINE - chr15:25277279-25277477 chr15 25277279 25277477 MER20 DNA - chr15:25279590-25279683 chr15 25279590 25279683 (ATCT)n Simple_repeat + chr15:25280039-25280236 chr15 25280039 25280236 MER58A DNA - chr15:25280970-25281449 chr15 25280970 25281449 L1M5 LINE + chr15:25283099-25283909 chr15 25283099 25283909 L1MC4 LINE + chr15:25284076-25284348 chr15 25284076 25284348 L1MB7 LINE - chr15:25284498-25284809 chr15 25284498 25284809 AluY SINE + chr15:25285209-25285235 chr15 25285209 25285235 (TA)n Simple_repeat + chr15:25285498-25285778 chr15 25285498 25285778 AluSz SINE + chr15:25286350-25286483 chr15 25286350 25286483 FLAM_A SINE - chr15:25286643-25286919 chr15 25286643 25286919 AluSp SINE + chr15:25287886-25288218 chr15 25287886 25288218 AluJr4 SINE - chr15:25288219-25291363 chr15 25288219 25291363 L1M4 LINE - chr15:25288693-25288777 chr15 25288693 25288777 AluJr SINE - chr15:25289575-25289869 chr15 25289575 25289869 AluY SINE - chr15:25290020-25290230 chr15 25290020 25290230 AluJr SINE - chr15:25291422-25293127 chr15 25291422 25293127 L1PA15 LINE - chr15:25291761-25292302 chr15 25291761 25292302 MLT2A2 LTR + chr15:25292629-25292928 chr15 25292629 25292928 AluSz SINE - chr15:25293117-25293167 chr15 25293117 25293167 L1P4 LINE + chr15:25293163-25295213 chr15 25293163 25295213 L1M3 LINE - chr15:25293493-25293767 chr15 25293493 25293767 AluSq2 SINE - chr15:25293970-25294216 chr15 25293970 25294216 (TCCC)n Simple_repeat + chr15:25294216-25294244 chr15 25294216 25294244 (TTCC)n Simple_repeat + chr15:25294246-25294514 chr15 25294246 25294514 AluJb SINE - chr15:25298695-25298736 chr15 25298695 25298736 (AC)n Simple_repeat + chr15:25301358-25301403 chr15 25301358 25301403 (AC)n Simple_repeat + chr15:25304044-25304073 chr15 25304044 25304073 (AC)n Simple_repeat + chr15:25305468-25305493 chr15 25305468 25305493 X24_LINE LINE - chr15:25306431-25306485 chr15 25306431 25306485 Penelope1_Vert LINE + chr15:25306754-25306864 chr15 25306754 25306864 (CA)n Simple_repeat + chr15:25312258-25312309 chr15 25312258 25312309 (ACACAT)n Simple_repeat + chr15:25314957-25315020 chr15 25314957 25315020 (AC)n Simple_repeat + chr15:25317596-25317629 chr15 25317596 25317629 (CA)n Simple_repeat + chr15:25319339-25319391 chr15 25319339 25319391 L3 LINE - chr15:25337064-25337100 chr15 25337064 25337100 MamRTE1 LINE - chr15:25339699-25339779 chr15 25339699 25339779 LTR57-int LTR - chr15:25339973-25340006 chr15 25339973 25340006 (T)n Simple_repeat + chr15:25341120-25341416 chr15 25341120 25341416 AluSg SINE + chr15:25341454-25342141 chr15 25341454 25342141 L1MDb LINE - chr15:25341477-25341502 chr15 25341477 25341502 (T)n Simple_repeat + chr15:25343319-25343397 chr15 25343319 25343397 (ATATATT)n Simple_repeat + chr15:25345082-25345380 chr15 25345082 25345380 AluSx1 SINE - chr15:25346321-25346347 chr15 25346321 25346347 (TA)n Simple_repeat + chr15:25347175-25347976 chr15 25347175 25347976 L1PA7 LINE - chr15:25348127-25348713 chr15 25348127 25348713 MER2 DNA + chr15:25348247-25348559 chr15 25348247 25348559 AluSx1 SINE - chr15:25348812-25348839 chr15 25348812 25348839 (TAGAA)n Simple_repeat + chr15:25357802-25359446 chr15 25357802 25359446 L1M4a1 LINE + chr15:25358785-25359079 chr15 25358785 25359079 AluSz6 SINE + chr15:25359642-25359694 chr15 25359642 25359694 MER66B LTR + chr15:25359710-25359996 chr15 25359710 25359996 AluSx SINE - chr15:25360313-25360696 chr15 25360313 25360696 MER54A LTR + chr15:25360697-25360749 chr15 25360697 25360749 (TC)n Simple_repeat + chr15:25362245-25362274 chr15 25362245 25362274 (TG)n Simple_repeat + chr15:25364767-25365957 chr15 25364767 25365957 L1ME3G LINE - chr15:25365772-25365806 chr15 25365772 25365806 (TGTCTCC)n Simple_repeat + chr15:25366282-25366546 chr15 25366282 25366546 MER110 LTR - chr15:25371069-25371083 chr15 25371069 25371083 (TTCCT)n Simple_repeat + chr15:25371083-25371117 chr15 25371083 25371117 (TTTCTT)n Simple_repeat + chr15:25581627-25581683 chr15 25581627 25581683 LTR84a LTR + chr15:25581698-25581728 chr15 25581698 25581728 (TATC)n Simple_repeat + chr15:25685392-25685412 chr15 25685392 25685412 (GT)n Simple_repeat + chr1:52837528-52837662 chr1 52837528 52837662 AluJb SINE + chr1:52837662-52837694 chr1 52837662 52837694 (AAAT)n Simple_repeat + chr1:52838178-52838364 chr1 52838178 52838364 L1ME4b LINE - chr15:28582082-28582105 chr15 28582082 28582105 (TGTAT)n Simple_repeat + chr15:28819814-28819837 chr15 28819814 28819837 (TACAA)n Simple_repeat + chr15:28888977-28889040 chr15 28888977 28889040 L1M4 LINE + chr15:28892035-28892078 chr15 28892035 28892078 (TCTG)n Simple_repeat + chr15:28892079-28892164 chr15 28892079 28892164 (TA)n Simple_repeat + chr15:28896792-28896825 chr15 28896792 28896825 (GTGTGG)n Simple_repeat + chr15:28899100-28899213 chr15 28899100 28899213 FLAM_A SINE + chr15:28904138-28904277 chr15 28904138 28904277 MER5A1 DNA + chr15:28904380-28904409 chr15 28904380 28904409 (ATGT)n Simple_repeat + chr15:28916188-28916507 chr15 28916188 28916507 AluJb SINE - chr15:28920794-28920825 chr15 28920794 28920825 (TGTTTT)n Simple_repeat + chr15:28934508-28934540 chr15 28934508 28934540 (T)n Simple_repeat + chr15:28942620-28942647 chr15 28942620 28942647 (AAAAC)n Simple_repeat + chr15:29079196-29079215 chr15 29079196 29079215 (T)n Simple_repeat + chr15:29080233-29080274 chr15 29080233 29080274 AluSq SINE - chr15:29081524-29081546 chr15 29081524 29081546 (AC)n Simple_repeat + chr15:30489233-30489275 chr15 30489233 30489275 MLT2A2 LTR - chr15:30489930-30489988 chr15 30489930 30489988 MER5A DNA - chr15:30713363-30713393 chr15 30713363 30713393 A-rich Low_complexity + chr15:30766482-30766507 chr15 30766482 30766507 (TTTGT)n Simple_repeat + chr15:30776405-30776460 chr15 30776405 30776460 (TGTA)n Simple_repeat + chr15:30860847-30860866 chr15 30860847 30860866 GA-rich Low_complexity + chr15:30917370-30917489 chr15 30917370 30917489 L2a LINE - chr1:53150126-53151221 chr1 53150126 53151221 L1MC1 LINE - chr1:53151229-53151249 chr1 53151229 53151249 (TG)n Simple_repeat + chr1:53151249-53151535 chr1 53151249 53151535 AluSg SINE - chr1:53151538-53151837 chr1 53151538 53151837 AluSz SINE - chr15:32825620-32825645 chr15 32825620 32825645 (AACAA)n Simple_repeat + chr15:32906754-32906860 chr15 32906754 32906860 L2a LINE - chr15:35144375-35144670 chr15 35144375 35144670 AluSx1 SINE - chr15:35144726-35144984 chr15 35144726 35144984 MER103C DNA + chr15:35145443-35145475 chr15 35145443 35145475 (T)n Simple_repeat + chr15:35145932-35146149 chr15 35145932 35146149 MIRc SINE - chr15:35146356-35146384 chr15 35146356 35146384 (A)n Simple_repeat + chr15:35349769-35349811 chr15 35349769 35349811 G-rich Low_complexity + chr1:53798274-53798280 chr1 53798274 53798280 (TCTCTC)n Simple_repeat + chr15:40332243-40332300 chr15 40332243 40332300 MIR3 SINE + chr15:40688169-40688268 chr15 40688169 40688268 MIRb SINE + chr15:41577518-41577884 chr15 41577518 41577884 LTR7 LTR - chr15:41577888-41578017 chr15 41577888 41578017 Charlie4z DNA + chr15:41578581-41578888 chr15 41578581 41578888 AluSz SINE + chr15:41578909-41579875 chr15 41578909 41579875 L1MA9 LINE - chr15:41579317-41579618 chr15 41579317 41579618 AluSx SINE - chr15:41579876-41580032 chr15 41579876 41580032 AluSg SINE + chr15:41580032-41580107 chr15 41580032 41580107 L1M1 LINE - chr15:41580142-41580433 chr15 41580142 41580433 AluSq2 SINE - chr15:41580499-41580917 chr15 41580499 41580917 MLT1C LTR - chr15:41580988-41581104 chr15 41580988 41581104 FAM SINE + chr15:41581104-41581338 chr15 41581104 41581338 L1MB3 LINE + chr15:41581362-41581419 chr15 41581362 41581419 (TA)n Simple_repeat + chr15:41581540-41582131 chr15 41581540 41582131 L1ME4b LINE + chr15:41581579-41581870 chr15 41581579 41581870 AluSz SINE + chr15:41581870-41581924 chr15 41581870 41581924 (AT)n Simple_repeat + chr15:41582343-41582615 chr15 41582343 41582615 AluSq SINE - chr15:41582619-41582787 chr15 41582619 41582787 AluSg4 SINE - chr15:41582959-41585038 chr15 41582959 41585038 MLT1F LTR - chr15:41583103-41583399 chr15 41583103 41583399 AluY SINE + chr15:41583674-41583971 chr15 41583674 41583971 AluY SINE - chr15:41583975-41584145 chr15 41583975 41584145 MER21C LTR - chr15:41584146-41584853 chr15 41584146 41584853 L1M4 LINE - chr15:41584221-41584519 chr15 41584221 41584519 AluSz SINE - chr15:41585595-41585964 chr15 41585595 41585964 AluSg4 SINE + chr15:41586050-41586355 chr15 41586050 41586355 AluSx SINE - chr15:41586360-41586873 chr15 41586360 41586873 L2a LINE - chr15:41586898-41587189 chr15 41586898 41587189 AluJr SINE - chr15:41587413-41587694 chr15 41587413 41587694 AluSg4 SINE - chr15:41587704-41587825 chr15 41587704 41587825 AluSc SINE - chr15:41588171-41588442 chr15 41588171 41588442 L1MB4 LINE - chr15:41588503-41588792 chr15 41588503 41588792 AluSq SINE - chr15:41589032-41589334 chr15 41589032 41589334 AluJo SINE - chr15:41589360-41589672 chr15 41589360 41589672 AluSz SINE + chr15:41589839-41590147 chr15 41589839 41590147 AluSx1 SINE - chr15:41590811-41591106 chr15 41590811 41591106 AluSx1 SINE + chr15:41591312-41591481 chr15 41591312 41591481 AluSz SINE - chr15:41592706-41592734 chr15 41592706 41592734 (AT)n Simple_repeat + chr15:41593186-41593416 chr15 41593186 41593416 AluSz6 SINE - chr15:41594168-41594197 chr15 41594168 41594197 (A)n Simple_repeat + chr15:41594411-41594719 chr15 41594411 41594719 AluSc SINE + chr15:41597436-41597694 chr15 41597436 41597694 AluSz6 SINE - chr15:41599036-41599277 chr15 41599036 41599277 MIR SINE - chr15:41599422-41599469 chr15 41599422 41599469 Alu SINE - chr15:41600902-41601194 chr15 41600902 41601194 AluSz SINE - chr15:42063741-42063797 chr15 42063741 42063797 L2d2 LINE + chr15:44827285-44827562 chr15 44827285 44827562 AluJb SINE - chr1:54691580-54691649 chr1 54691580 54691649 MamRTE1 LINE + chr15:48622601-48622699 chr15 48622601 48622699 HAL1 LINE + chr15:50649240-50649433 chr15 50649240 50649433 L2 LINE - chr15:50649431-50655352 chr15 50649431 50655352 L2a LINE - chr15:50649608-50649894 chr15 50649608 50649894 AluSx SINE + chr15:50650004-50650145 chr15 50650004 50650145 L2b LINE - chr15:50650210-50650527 chr15 50650210 50650527 AluY SINE + chr15:50650665-50650929 chr15 50650665 50650929 Charlie5 DNA - chr15:50650930-50651044 chr15 50650930 50651044 Charlie5 DNA - chr15:50651314-50652164 chr15 50651314 50652164 MER5C DNA + chr15:50651498-50651802 chr15 50651498 50651802 AluSc SINE - chr15:50651804-50652117 chr15 50651804 50652117 AluSp SINE - chr15:50652335-50652547 chr15 50652335 50652547 MIRb SINE - chr15:50652785-50653065 chr15 50652785 50653065 AluJb SINE - chr15:50653107-50653906 chr15 50653107 50653906 L1ME3B LINE + chr15:50653173-50653474 chr15 50653173 50653474 AluSz SINE + chr15:50653551-50653781 chr15 50653551 50653781 L1M4 LINE + chr15:50653914-50654221 chr15 50653914 50654221 MSTB1 LTR + chr15:50655475-50655996 chr15 50655475 50655996 MER113 DNA - chr15:50655586-50655881 chr15 50655586 50655881 AluJb SINE - chr15:50657921-50658123 chr15 50657921 50658123 AluJb SINE + chr15:50658382-50658494 chr15 50658382 50658494 MIR SINE + chr15:50658604-50658883 chr15 50658604 50658883 AluSx1 SINE - chr15:50658950-50659253 chr15 50658950 50659253 AluJr SINE - chr15:50659377-50659745 chr15 50659377 50659745 UCON34 DNA - chr15:50660164-50661428 chr15 50660164 50661428 MLT1A LTR + chr15:50660211-50660493 chr15 50660211 50660493 AluJo SINE + chr15:50661696-50661995 chr15 50661696 50661995 AluSx SINE + chr15:50662000-50662304 chr15 50662000 50662304 AluSz6 SINE + chr15:50662518-50662814 chr15 50662518 50662814 AluSz SINE + chr15:50662900-50663188 chr15 50662900 50663188 AluSx SINE + chr15:50663193-50663396 chr15 50663193 50663396 L1MC5 LINE + chr15:50995262-50995383 chr15 50995262 50995383 FAM SINE - chr15:50998238-50998736 chr15 50998238 50998736 MIR3 SINE - chr15:52211872-52211910 chr15 52211872 52211910 MER2 DNA + chr15:52212063-52212092 chr15 52212063 52212092 (TTTTA)n Simple_repeat + chr15:52212397-52212467 chr15 52212397 52212467 L2c LINE + chr15:52219642-52219667 chr15 52219642 52219667 (ACA)n Simple_repeat + chr15:52222216-52222274 chr15 52222216 52222274 A-rich Low_complexity + chr15:52225293-52225381 chr15 52225293 52225381 L1MC4 LINE + chr15:52226880-52226928 chr15 52226880 52226928 Alu SINE + chr15:52227349-52227378 chr15 52227349 52227378 (ATAA)n Simple_repeat + chr15:53082283-53082297 chr15 53082283 53082297 (CT)n Simple_repeat + chr15:53092869-53092921 chr15 53092869 53092921 (GT)n Simple_repeat + chr15:53093218-53093239 chr15 53093218 53093239 (GCT)n Simple_repeat + chr15:53093308-53093419 chr15 53093308 53093419 MamRTE1 LINE + chr1:55842294-55842524 chr1 55842294 55842524 7SK RNA - chr15:58880630-58880707 chr15 58880630 58880707 MER103C DNA - chr15:58881343-58881413 chr15 58881343 58881413 L2c LINE - chr15:58882470-58882646 chr15 58882470 58882646 L2b LINE + chr15:58882728-58882755 chr15 58882728 58882755 GA-rich Low_complexity + chr15:58884951-58884971 chr15 58884951 58884971 (AT)n Simple_repeat + chr15:58886878-58886904 chr15 58886878 58886904 (GGGA)n Simple_repeat + chr15:60294846-60294874 chr15 60294846 60294874 (TG)n Simple_repeat + chr15:60299113-60299152 chr15 60299113 60299152 A-rich Low_complexity + chr15:60774225-60774262 chr15 60774225 60774262 (TCATATG)n Simple_repeat + chr15:62693487-62693543 chr15 62693487 62693543 FRAM SINE - chr15:62693654-62693707 chr15 62693654 62693707 L2d2 LINE - chr15:62697191-62697224 chr15 62697191 62697224 (TTTAT)n Simple_repeat + chr15:62700867-62700917 chr15 62700867 62700917 MER5A DNA + chr15:62703628-62703675 chr15 62703628 62703675 (TG)n Simple_repeat + chr15:62706363-62706391 chr15 62706363 62706391 (TA)n Simple_repeat + chr15:62724758-62724789 chr15 62724758 62724789 MIRc SINE + chr15:62729951-62729988 chr15 62729951 62729988 (GTGT)n Simple_repeat + chr15:62737074-62737113 chr15 62737074 62737113 (GCATGT)n Simple_repeat + chr15:62739352-62739386 chr15 62739352 62739386 (TATT)n Simple_repeat + chr15:62742710-62742746 chr15 62742710 62742746 (TGTA)n Simple_repeat + chr15:62748531-62748568 chr15 62748531 62748568 (CAGCAG)n Simple_repeat + chr15:62751498-62751518 chr15 62751498 62751518 (T)n Simple_repeat + chr15:62757303-62757339 chr15 62757303 62757339 (T)n Simple_repeat + chr15:62762117-62762155 chr15 62762117 62762155 (TG)n Simple_repeat + chr15:62762154-62762177 chr15 62762154 62762177 (GA)n Simple_repeat + chr15:62762525-62762583 chr15 62762525 62762583 AmnSINE2 SINE + chr15:62765695-62765763 chr15 62765695 62765763 L1ME3B LINE - chr15:62783550-62783595 chr15 62783550 62783595 (AC)n Simple_repeat + chr15:62788144-62788178 chr15 62788144 62788178 (A)n Simple_repeat + chr15:62792124-62792168 chr15 62792124 62792168 A-rich Low_complexity + chr15:62797017-62797046 chr15 62797017 62797046 (GT)n Simple_repeat + chr15:62815140-62815178 chr15 62815140 62815178 (AC)n Simple_repeat + chr15:62822550-62822575 chr15 62822550 62822575 (ATTC)n Simple_repeat + chr15:62827568-62827660 chr15 62827568 62827660 FLAM_A SINE + chr15:62827666-62827690 chr15 62827666 62827690 (AC)n Simple_repeat + chr15:62827696-62827740 chr15 62827696 62827740 MER5B DNA - chr15:62828241-62828264 chr15 62828241 62828264 (TTA)n Simple_repeat + chr15:62829751-62829816 chr15 62829751 62829816 MIR1_Amn SINE - chr15:62830421-62830447 chr15 62830421 62830447 (AC)n Simple_repeat + chr15:62832555-62832573 chr15 62832555 62832573 (T)n Simple_repeat + chr15:62834688-62834744 chr15 62834688 62834744 Tigger7 DNA - chr15:62837576-62837616 chr15 62837576 62837616 GA-rich Low_complexity + chr15:62837713-62837744 chr15 62837713 62837744 (TG)n Simple_repeat + chr15:62837994-62838025 chr15 62837994 62838025 L2a LINE + chr15:62840592-62840653 chr15 62840592 62840653 MLT1K LTR - chr15:62841674-62841721 chr15 62841674 62841721 (CCAT)n Simple_repeat + chr15:62843712-62843747 chr15 62843712 62843747 (AC)n Simple_repeat + chr15:62850516-62850586 chr15 62850516 62850586 L2c LINE + chr15:63884532-63884553 chr15 63884532 63884553 (T)n Simple_repeat + chr15:63885157-63885262 chr15 63885157 63885262 MER3 DNA - chr15:65009343-65009393 chr15 65009343 65009393 L2b LINE + chr15:65028467-65028518 chr15 65028467 65028518 MIR1_Amn SINE + chr15:65588388-65588505 chr15 65588388 65588505 U5 snRNA + chr15:65597014-65597131 chr15 65597014 65597131 U5 snRNA + chr15:66185367-66185386 chr15 66185367 66185386 Tigger4a DNA - chr15:66626322-66626448 chr15 66626322 66626448 LTR78B LTR - chr15:66626587-66626720 chr15 66626587 66626720 AluSg4 SINE + chr15:66626720-66627011 chr15 66626720 66627011 AluSg7 SINE + chr15:66627753-66627990 chr15 66627753 66627990 AluJr SINE + chr15:66627991-66628014 chr15 66627991 66628014 (AC)n Simple_repeat + chr15:68480402-68480439 chr15 68480402 68480439 A-rich Low_complexity + chr15:68481967-68482001 chr15 68481967 68482001 (TATG)n Simple_repeat + chr15:68590698-68590734 chr15 68590698 68590734 MIRb SINE - chr15:69748703-69748784 chr15 69748703 69748784 L1M5 LINE + chr15:72884008-72884046 chr15 72884008 72884046 MIR SINE - chr15:74200553-74200598 chr15 74200553 74200598 (AC)n Simple_repeat + chr15:74770890-74773334 chr15 74770890 74773334 L1ME1 LINE - chr15:74771424-74773250 chr15 74771424 74773250 LTR12C LTR - chr15:74773500-74773624 chr15 74773500 74773624 FLAM_C SINE + chr15:76228640-76228683 chr15 76228640 76228683 (TAA)n Simple_repeat + chr15:79191182-79191283 chr15 79191182 79191283 U6 snRNA - chr15:79192056-79192219 chr15 79192056 79192219 Charlie1 DNA - chr15:79195657-79195705 chr15 79195657 79195705 L1ME3G LINE + chr15:79197596-79197711 chr15 79197596 79197711 FLAM_C SINE + chr15:79201791-79201823 chr15 79201791 79201823 (TG)n Simple_repeat + chr15:81940670-81940704 chr15 81940670 81940704 (ATCTAT)n Simple_repeat + chr15:81942759-81942789 chr15 81942759 81942789 (TCTC)n Simple_repeat + chr15:81942834-81942850 chr15 81942834 81942850 (TCTC)n Simple_repeat + chr15:81942850-81942856 chr15 81942850 81942856 (TCTATA)n Simple_repeat + chr15:81942856-81942866 chr15 81942856 81942866 (ATAT)n Simple_repeat + chr15:81959585-81959609 chr15 81959585 81959609 (A)n Simple_repeat + chr15:82698912-82699224 chr15 82698912 82699224 AluSz SINE - chr15:82700429-82700453 chr15 82700429 82700453 (TAA)n Simple_repeat + chr15:82712370-82712403 chr15 82712370 82712403 (TTCAT)n Simple_repeat + chr15:82713017-82713046 chr15 82713017 82713046 (GTTTT)n Simple_repeat + chr15:82715237-82715277 chr15 82715237 82715277 (TCTCCC)n Simple_repeat + chr15:82715529-82715580 chr15 82715529 82715580 L2 LINE - chr15:82716714-82716765 chr15 82716714 82716765 A-rich Low_complexity + chr15:82721274-82721579 chr15 82721274 82721579 AluSx1 SINE - chr15:82732245-82732277 chr15 82732245 82732277 (T)n Simple_repeat + chr15:82766091-82766293 chr15 82766091 82766293 MIRc SINE + chr15:82797357-82797385 chr15 82797357 82797385 (A)n Simple_repeat + chr15:82798152-82798189 chr15 82798152 82798189 (CGG)n Simple_repeat + chr15:82973584-82973786 chr15 82973584 82973786 MIRc SINE - chr15:83052615-83052652 chr15 83052615 83052652 (GA)n Simple_repeat + chr15:83052652-83052685 chr15 83052652 83052685 (GT)n Simple_repeat + chr15:83054829-83056822 chr15 83054829 83056822 L1ME4b LINE + chr15:83055444-83055513 chr15 83055444 83055513 (TA)n Simple_repeat + chr15:83056039-83056077 chr15 83056039 83056077 (TAGATA)n Simple_repeat + chr15:83075437-83075749 chr15 83075437 83075749 AluSz SINE - chr15:83076954-83076978 chr15 83076954 83076978 (TAA)n Simple_repeat + chr15:83088895-83088928 chr15 83088895 83088928 (TTCAT)n Simple_repeat + chr15:83089542-83089571 chr15 83089542 83089571 (GTTTT)n Simple_repeat + chr15:83091762-83091802 chr15 83091762 83091802 (TCTCCC)n Simple_repeat + chr15:83092054-83092105 chr15 83092054 83092105 L2 LINE - chr15:83093239-83093290 chr15 83093239 83093290 A-rich Low_complexity + chr15:83097799-83098104 chr15 83097799 83098104 AluSx1 SINE - chr15:83420331-83420433 chr15 83420331 83420433 MERX DNA + chr15:83421562-83421685 chr15 83421562 83421685 AluJo SINE + chr15:83421698-83421763 chr15 83421698 83421763 (T)n Simple_repeat + chr15:83421999-83422156 chr15 83421999 83422156 MERX DNA + chr15:83422192-83422258 chr15 83422192 83422258 U3 snRNA - chr15:83422248-83422327 chr15 83422248 83422327 MERX DNA + chr15:83423429-83423500 chr15 83423429 83423500 L2c LINE - chr15:84870097-84870299 chr15 84870097 84870299 MIRc SINE + chr15:85049420-85049452 chr15 85049420 85049452 A-rich Low_complexity + chr15:85056260-85056314 chr15 85056260 85056314 MIR3 SINE - chr15:85057884-85057998 chr15 85057884 85057998 MIRb SINE - chr15:85058834-85058883 chr15 85058834 85058883 Charlie16a DNA - chr15:85065527-85065578 chr15 85065527 85065578 (ATTTTTA)n Simple_repeat + chr15:85066712-85066763 chr15 85066712 85066763 L2 LINE + chr15:85067015-85067055 chr15 85067015 85067055 GA-rich Low_complexity + chr15:85069245-85069274 chr15 85069245 85069274 (AAAAC)n Simple_repeat + chr15:85069888-85069921 chr15 85069888 85069921 A-rich Low_complexity + chr15:85081886-85081917 chr15 85081886 85081917 (ATT)n Simple_repeat + chr15:85082286-85082311 chr15 85082286 85082311 (TA)n Simple_repeat + chr15:85089461-85089480 chr15 85089461 85089480 (TCT)n Simple_repeat + chr15:85102870-85102908 chr15 85102870 85102908 (TGTATG)n Simple_repeat + chr15:85107283-85107306 chr15 85107283 85107306 (TTTG)n Simple_repeat + chr15:85110081-85110115 chr15 85110081 85110115 (AC)n Simple_repeat + chr15:85110115-85110143 chr15 85110115 85110143 (TC)n Simple_repeat + chr15:85112951-85113240 chr15 85112951 85113240 AluSx1 SINE + chr15:85113240-85113399 chr15 85113240 85113399 AluSq10 SINE - chr15:85184009-85184157 chr15 85184009 85184157 MIR SINE + chr15:85184162-85184193 chr15 85184162 85184193 (TTATCA)n Simple_repeat + chr15:85185096-85185220 chr15 85185096 85185220 FLAM_C SINE - chr15:85185290-85185596 chr15 85185290 85185596 AluSc SINE + chr15:85185718-85185995 chr15 85185718 85185995 AluJb SINE - chr15:85749174-85749376 chr15 85749174 85749376 MIRc SINE + chr15:89547886-89547892 chr15 89547886 89547892 (TTCC)n Simple_repeat + chr15:90544411-90544437 chr15 90544411 90544437 (GAAA)n Simple_repeat + chr15:90815761-90815916 chr15 90815761 90815916 FRAM SINE + chr15:90815961-90816100 chr15 90815961 90816100 MIRc SINE - chr15:90817102-90817402 chr15 90817102 90817402 AluSz SINE - chr15:90818142-90821014 chr15 90818142 90821014 AluSx SINE + chr15:90818311-90818352 chr15 90818311 90818352 (CTCCG)n Simple_repeat + chr15:90818526-90818546 chr15 90818526 90818546 (GGC)n Simple_repeat + chr15:93426328-93426363 chr15 93426328 93426363 G-rich Low_complexity + chr15:93963509-93963569 chr15 93963509 93963569 5S rRNA - chr15:97966439-97966461 chr15 97966439 97966461 (CA)n Simple_repeat + chr16:11447629-11447657 chr16 11447629 11447657 (AC)n Simple_repeat + chr16:11928039-11928207 chr16 11928039 11928207 MER47A DNA + chr16:11928693-11928957 chr16 11928693 11928957 AluJb SINE + chr16:13522132-13522146 chr16 13522132 13522146 A-rich Low_complexity + chr16:13522146-13522169 chr16 13522146 13522169 (AG)n Simple_repeat + chr16:14379749-14379821 chr16 14379749 14379821 tRNA-Thr-ACG tRNA + chr16:14398838-14398858 chr16 14398838 14398858 (AC)n Simple_repeat + chr16:14802102-14802285 chr16 14802102 14802285 MIR SINE - chr16:14802287-14802341 chr16 14802287 14802341 L2b LINE - chr16:14841409-14841463 chr16 14841409 14841463 L2b LINE - chr16:14841634-14841814 chr16 14841634 14841814 MIRb SINE - chr16:15027456-15028293 chr16 15027456 15028293 L1M4 LINE + chr16:15027732-15027861 chr16 15027732 15027861 AluJr SINE + chr16:15029998-15030309 chr16 15029998 15030309 AluSx4 SINE - chr16:15030311-15030452 chr16 15030311 15030452 MER113 DNA + chr16:15252408-15252527 chr16 15252408 15252527 MamRep1894 DNA + chr16:15301002-15301044 chr16 15301002 15301044 (AC)n Simple_repeat + chr16:15360697-15360812 chr16 15360697 15360812 MIR3 SINE + chr16:15361683-15361793 chr16 15361683 15361793 MIR SINE + chr16:15361795-15361908 chr16 15361795 15361908 MER81 DNA - chr16:15361981-15362004 chr16 15361981 15362004 (ATTGCT)n Simple_repeat + chr16:15362303-15362334 chr16 15362303 15362334 (ATTGCT)n Simple_repeat + chr16:15362567-15362671 chr16 15362567 15362671 AluSx4 SINE - chr16:15363569-15363663 chr16 15363569 15363663 MER5B DNA - chr16:15363940-15363979 chr16 15363940 15363979 (GCAAG)n Simple_repeat + chr16:15364100-15364256 chr16 15364100 15364256 MER5A1 DNA + chr16:15365013-15365106 chr16 15365013 15365106 LTR91A LTR - chr16:15365367-15365578 chr16 15365367 15365578 MIR SINE + chr16:15365972-15366011 chr16 15365972 15366011 (TAT)n Simple_repeat + chr16:15367949-15368146 chr16 15367949 15368146 MER20 DNA + chr16:15368151-15368264 chr16 15368151 15368264 MER94 DNA - chr16:15369719-15369764 chr16 15369719 15369764 (AAT)n Simple_repeat + chr16:15371325-15371368 chr16 15371325 15371368 (TC)n Simple_repeat + chr16:15374012-15374127 chr16 15374012 15374127 MIR SINE - chr16:15375361-15375494 chr16 15375361 15375494 FLAM_C SINE + chr16:15376246-15376340 chr16 15376246 15376340 L2a LINE + chr16:15376341-15376481 chr16 15376341 15376481 MER77 LTR - chr16:15379105-15379225 chr16 15379105 15379225 MamGypLTR2c LTR + chr16:15379290-15379438 chr16 15379290 15379438 FRAM SINE + chr16:15379960-15380094 chr16 15379960 15380094 FLAM_C SINE + chr16:15381912-15381994 chr16 15381912 15381994 MIRb SINE + chr16:15382232-15382278 chr16 15382232 15382278 (TC)n Simple_repeat + chr16:15383901-15384035 chr16 15383901 15384035 AluSz SINE + chr16:15385873-15385967 chr16 15385873 15385967 (AC)n Simple_repeat + chr16:15386694-15386743 chr16 15386694 15386743 (TAT)n Simple_repeat + chr16:15387258-15387301 chr16 15387258 15387301 L2a LINE - chr16:15387666-15387695 chr16 15387666 15387695 (TTAA)n Simple_repeat + chr16:15388258-15388340 chr16 15388258 15388340 MIRb SINE + chr16:15388645-15388664 chr16 15388645 15388664 (AAT)n Simple_repeat + chr16:15389640-15389775 chr16 15389640 15389775 AluJr4 SINE - chr16:15389890-15390016 chr16 15389890 15390016 MIRc SINE + chr16:15391464-15391522 chr16 15391464 15391522 L2b LINE + chr16:15393091-15393157 chr16 15393091 15393157 MIRb SINE + chr16:15394551-15394679 chr16 15394551 15394679 AluSq2 SINE - chr16:15394817-15394868 chr16 15394817 15394868 Alu SINE - chr16:15394901-15395051 chr16 15394901 15395051 MARNA DNA - chr16:15396269-15396290 chr16 15396269 15396290 (T)n Simple_repeat + chr16:15396430-15396563 chr16 15396430 15396563 MIR SINE + chr16:15397667-15397708 chr16 15397667 15397708 (CTCC)n Simple_repeat + chr16:15398308-15398522 chr16 15398308 15398522 MIRc SINE + chr16:15398679-15398742 chr16 15398679 15398742 (TAATA)n Simple_repeat + chr16:15399030-15399048 chr16 15399030 15399048 (T)n Simple_repeat + chr16:15399773-15399820 chr16 15399773 15399820 (CAATCC)n Simple_repeat + chr16:15400397-15400454 chr16 15400397 15400454 (CT)n Simple_repeat + chr16:15401452-15401483 chr16 15401452 15401483 (AC)n Simple_repeat + chr16:15401597-15401618 chr16 15401597 15401618 (TG)n Simple_repeat + chr16:15401841-15401870 chr16 15401841 15401870 (TG)n Simple_repeat + chr16:15403590-15403607 chr16 15403590 15403607 Charlie8 DNA - chr16:15404326-15404414 chr16 15404326 15404414 MIRc SINE + chr16:15404511-15404713 chr16 15404511 15404713 MIR SINE + chr16:15438034-15438145 chr16 15438034 15438145 FRAM SINE - chr16:15439208-15439405 chr16 15439208 15439405 L1PB1 LINE + chr16:15443666-15443812 chr16 15443666 15443812 MER53 DNA + chr16:15443812-15443982 chr16 15443812 15443982 AluSg4 SINE + chr16:15446548-15446571 chr16 15446548 15446571 (T)n Simple_repeat + chr16:15446603-15446770 chr16 15446603 15446770 AluJr SINE + chr16:15446774-15446820 chr16 15446774 15446820 MIRb SINE + chr16:15446820-15446832 chr16 15446820 15446832 L2a LINE + chr16:15453529-15453655 chr16 15453529 15453655 AluJo SINE + chr16:15453671-15453703 chr16 15453671 15453703 (CA)n Simple_repeat + chr16:15454723-15454871 chr16 15454723 15454871 AluSc SINE + chr16:15475365-15475419 chr16 15475365 15475419 L2b LINE + chr16:15484799-15484816 chr16 15484799 15484816 (A)n Simple_repeat + chr16:16444956-16445257 chr16 16444956 16445257 AluSz SINE + chr16:16445633-16445801 chr16 16445633 16445801 FRAM SINE - chr16:16445804-16446096 chr16 16445804 16446096 AluJr SINE - chr16:16446204-16446403 chr16 16446204 16446403 L2b LINE + chr16:16447062-16447210 chr16 16447062 16447210 AluSc SINE - chr16:16447219-16447450 chr16 16447219 16447450 AluSg SINE + chr16:16447512-16447713 chr16 16447512 16447713 MIRb SINE + chr16:16467132-16467409 chr16 16467132 16467409 AluSx SINE - chr16:16665154-16665218 chr16 16665154 16665218 FLAM_C SINE - chr16:16665317-16665614 chr16 16665317 16665614 AluSz SINE - chr16:19093268-19093365 chr16 19093268 19093365 AluSq2 SINE + chr16:21413466-21413498 chr16 21413466 21413498 (TATT)n Simple_repeat + chr16:21453370-21453675 chr16 21453370 21453675 AluSx SINE + chr16:21454202-21454482 chr16 21454202 21454482 AluSz SINE + chr16:21454705-21455006 chr16 21454705 21455006 AluY SINE + chr16:21456852-21456907 chr16 21456852 21456907 AluJr4 SINE - chr16:21457047-21457101 chr16 21457047 21457101 FRAM SINE + chr16:21457130-21457344 chr16 21457130 21457344 MIRb SINE - chr16:21457822-21458343 chr16 21457822 21458343 L1ME1 LINE + chr16:21462029-21462057 chr16 21462029 21462057 (AACA)n Simple_repeat + chr16:21462812-21463127 chr16 21462812 21463127 L2 LINE + chr16:21469448-21469500 chr16 21469448 21469500 L2a LINE - chr16:21471711-21472450 chr16 21471711 21472450 MER58A DNA - chr16:21471788-21472082 chr16 21471788 21472082 AluSz SINE + chr16:21472134-21472421 chr16 21472134 21472421 AluSx1 SINE - chr16:21472455-21472517 chr16 21472455 21472517 L1MB8 LINE + chr16:21472525-21472579 chr16 21472525 21472579 MER58D DNA - chr16:21473854-21474193 chr16 21473854 21474193 Tigger4b DNA - chr16:21479889-21479910 chr16 21479889 21479910 (A)n Simple_repeat + chr16:21479910-21480063 chr16 21479910 21480063 FRAM SINE + chr16:21480744-21480790 chr16 21480744 21480790 A-rich Low_complexity + chr16:21480930-21480960 chr16 21480930 21480960 (ATAC)n Simple_repeat + chr16:21484871-21484894 chr16 21484871 21484894 (AATA)n Simple_repeat + chr16:21485434-21485742 chr16 21485434 21485742 AluSx SINE + chr16:21485808-21486058 chr16 21485808 21486058 L1MC4 LINE + chr16:21486271-21486574 chr16 21486271 21486574 AluJb SINE - chr16:21486791-21487088 chr16 21486791 21487088 AluSz SINE + chr16:21489715-21489899 chr16 21489715 21489899 L1ME2z LINE + chr16:21489979-21490278 chr16 21489979 21490278 AluSp SINE - chr16:21490347-21490465 chr16 21490347 21490465 FRAM SINE - chr16:21496126-21496190 chr16 21496126 21496190 MER81 DNA + chr16:21496805-21496833 chr16 21496805 21496833 (A)n Simple_repeat + chr16:21500613-21500873 chr16 21500613 21500873 AluSx1 SINE + chr16:21501340-21501637 chr16 21501340 21501637 AluJb SINE + chr16:21501766-21502041 chr16 21501766 21502041 AluJo SINE - chr16:21502473-21502578 chr16 21502473 21502578 MIR SINE - chr16:21502592-21502700 chr16 21502592 21502700 MIRb SINE - chr16:21502845-21503129 chr16 21502845 21503129 AluYm1 SINE - chr16:21503215-21503242 chr16 21503215 21503242 (A)n Simple_repeat + chr16:21506244-21506279 chr16 21506244 21506279 (ATTT)n Simple_repeat + chr16:21506279-21506401 chr16 21506279 21506401 AluJr SINE - chr16:21506781-21506826 chr16 21506781 21506826 (AC)n Simple_repeat + chr16:21508669-21508733 chr16 21508669 21508733 MADE1 DNA - chr16:21515921-21516089 chr16 21515921 21516089 AluSp SINE - chr16:21516538-21516695 chr16 21516538 21516695 AluJr SINE + chr16:21516713-21516878 chr16 21516713 21516878 L1M5 LINE - chr16:21517169-21517923 chr16 21517169 21517923 L2a LINE + chr16:21517195-21517305 chr16 21517195 21517305 L2 LINE + chr16:21517320-21517456 chr16 21517320 21517456 MER96 DNA - chr16:21517465-21517600 chr16 21517465 21517600 AluSx1 SINE + chr16:21518123-21518230 chr16 21518123 21518230 AluSq2 SINE - chr16:21518603-21518634 chr16 21518603 21518634 (CCAGC)n Simple_repeat + chr16:21519116-21519263 chr16 21519116 21519263 MER5A DNA - chr16:21520810-21520976 chr16 21520810 21520976 MIR3 SINE - chr16:21521760-21522915 chr16 21521760 21522915 MER4B LTR + chr16:21521956-21522213 chr16 21521956 21522213 AluSg SINE + chr16:21522339-21522627 chr16 21522339 21522627 AluSx SINE + chr16:21523730-21523775 chr16 21523730 21523775 MIR1_Amn SINE + chr16:21526214-21526497 chr16 21526214 21526497 AluSp SINE + chr16:21526497-21526546 chr16 21526497 21526546 (AAAT)n Simple_repeat + chr16:21526831-21527314 chr16 21526831 21527314 LTR22B LTR - chr16:21527463-21527493 chr16 21527463 21527493 (ACAC)n Simple_repeat + chr16:21527677-21527984 chr16 21527677 21527984 AluSq2 SINE + chr16:21528092-21528141 chr16 21528092 21528141 Alu SINE + chr16:21528141-21528285 chr16 21528141 21528285 AluSx SINE + chr16:21528617-21529046 chr16 21528617 21529046 AluSx3 SINE - chr16:21528731-21529031 chr16 21528731 21529031 AluSq SINE - chr16:21529206-21529499 chr16 21529206 21529499 AluSx SINE - chr16:21530108-21530417 chr16 21530108 21530417 AluY SINE + chr16:21531556-21531590 chr16 21531556 21531590 (CGCCCT)n Simple_repeat + chr16:21538089-21538124 chr16 21538089 21538124 GA-rich Low_complexity + chr16:21539009-21539068 chr16 21539009 21539068 MIRb SINE + chr16:21552832-21555148 chr16 21552832 21555148 MIRb SINE - chr16:21553715-21553799 chr16 21553715 21553799 Arthur1C DNA + chr16:21560870-21561181 chr16 21560870 21561181 AluSz SINE + chr16:21561833-21561929 chr16 21561833 21561929 L2b LINE + chr16:21566731-21566978 chr16 21566731 21566978 MIRb SINE + chr16:21566937-21566966 chr16 21566937 21566966 (AAAC)n Simple_repeat + chr16:21567603-21567908 chr16 21567603 21567908 AluSx1 SINE - chr16:21567959-21567976 chr16 21567959 21567976 (A)n Simple_repeat + chr16:21570117-21570201 chr16 21570117 21570201 AluJb SINE + chr16:21571145-21573115 chr16 21571145 21573115 AluJb SINE - chr16:21573616-21573693 chr16 21573616 21573693 MIRb SINE + chr16:21573740-21574795 chr16 21573740 21574795 MLT1A LTR + chr16:21574237-21574312 chr16 21574237 21574312 (CCCCTT)n Simple_repeat + chr16:21575870-21575966 chr16 21575870 21575966 GA-rich Low_complexity + chr16:21582177-21584270 chr16 21582177 21584270 L1M2 LINE + chr16:21582264-21582581 chr16 21582264 21582581 AluSq2 SINE + chr16:21583865-21583911 chr16 21583865 21583911 (AAAT)n Simple_repeat + chr16:21584674-21584764 chr16 21584674 21584764 AluSp SINE + chr16:21586062-21586807 chr16 21586062 21586807 MER63C DNA - chr16:21586201-21586326 chr16 21586201 21586326 MER63C DNA + chr16:21587839-21587882 chr16 21587839 21587882 (AAAT)n Simple_repeat + chr16:21593294-21593549 chr16 21593294 21593549 AluSg SINE + chr16:21594619-21594651 chr16 21594619 21594651 (CCAAA)n Simple_repeat + chr16:21594668-21594710 chr16 21594668 21594710 MER30B DNA - chr16:21596543-21596588 chr16 21596543 21596588 (GT)n Simple_repeat + chr16:21598510-21598601 chr16 21598510 21598601 (TA)n Simple_repeat + chr16:21600095-21600171 chr16 21600095 21600171 GA-rich Low_complexity + chr16:21600494-21600573 chr16 21600494 21600573 AluJr4 SINE + chr16:21605259-21605579 chr16 21605259 21605579 AluJb SINE - chr16:21676299-21676345 chr16 21676299 21676345 (AATA)n Simple_repeat + chr16:21677564-21677582 chr16 21677564 21677582 (T)n Simple_repeat + chr16:21677783-21677894 chr16 21677783 21677894 MER81 DNA + chr16:21680256-21682020 chr16 21680256 21682020 L2a LINE + chr16:21680379-21680705 chr16 21680379 21680705 AluSz SINE + chr16:21683054-21683598 chr16 21683054 21683598 L1ME2 LINE - chr16:21686217-21686243 chr16 21686217 21686243 (T)n Simple_repeat + chr16:21686374-21686475 chr16 21686374 21686475 (TTTC)n Simple_repeat + chr16:21686484-21686775 chr16 21686484 21686775 AluSz6 SINE - chr16:21686628-21686658 chr16 21686628 21686658 (T)n Simple_repeat + chr16:21689728-21689790 chr16 21689728 21689790 (AT)n Simple_repeat + chr16:21777047-21777120 chr16 21777047 21777120 MLT1H LTR + chr16:21777260-21777312 chr16 21777260 21777312 (AGCCA)n Simple_repeat + chr16:21779230-21779454 chr16 21779230 21779454 MLT1K LTR - chr16:21779287-21779326 chr16 21779287 21779326 (AG)n Simple_repeat + chr16:21779532-21781713 chr16 21779532 21781713 MLT1E1A LTR + chr16:21781525-21781572 chr16 21781525 21781572 (AAAG)n Simple_repeat + chr16:21789555-21792186 chr16 21789555 21792186 L2a LINE + chr16:21790031-21790056 chr16 21790031 21790056 (TC)n Simple_repeat + chr16:21790056-21790079 chr16 21790056 21790079 (ATCT)n Simple_repeat + chr16:21794638-21794680 chr16 21794638 21794680 MIRb SINE + chr16:21795826-21796134 chr16 21795826 21796134 AluSz SINE - chr16:21807243-21807283 chr16 21807243 21807283 L2a LINE - chr16:21807864-21808286 chr16 21807864 21808286 LTR52 LTR - chr16:21808078-21808119 chr16 21808078 21808119 (GGGATG)n Simple_repeat + chr16:21810042-21810254 chr16 21810042 21810254 MER20 DNA + chr16:21810478-21810673 chr16 21810478 21810673 MIRb SINE + chr16:21810773-21810900 chr16 21810773 21810900 Charlie4z DNA + chr16:21812721-21812804 chr16 21812721 21812804 MER5B DNA - chr16:21813158-21813187 chr16 21813158 21813187 GA-rich Low_complexity + chr16:21877761-21878923 chr16 21877761 21878923 AluJb SINE + chr16:21878001-21878856 chr16 21878001 21878856 MER41A LTR + chr16:21878436-21878732 chr16 21878436 21878732 AluY SINE - chr16:21879435-21879608 chr16 21879435 21879608 AluSg SINE + chr16:21879619-21879930 chr16 21879619 21879930 AluJb SINE + chr16:21879950-21879976 chr16 21879950 21879976 (A)n Simple_repeat + chr16:21880030-21880420 chr16 21880030 21880420 MER1B DNA + chr16:21882632-21883641 chr16 21882632 21883641 HERVH-int LTR + chr16:21883641-21884344 chr16 21883641 21884344 AluSx SINE + chr16:21883822-21884277 chr16 21883822 21884277 LTR7B LTR + chr16:21884347-21889297 chr16 21884347 21889297 L2a LINE + chr16:21885377-21885495 chr16 21885377 21885495 AluJo SINE + chr16:21885496-21886038 chr16 21885496 21886038 AluJo SINE + chr16:21885633-21885941 chr16 21885633 21885941 AluSx SINE + chr16:21888048-21888206 chr16 21888048 21888206 AluJr4 SINE - chr16:21889114-21889169 chr16 21889114 21889169 AluJr4 SINE - chr16:21889309-21889363 chr16 21889309 21889363 Alu SINE + chr16:21889392-21889606 chr16 21889392 21889606 MIRb SINE - chr16:21892424-21892719 chr16 21892424 21892719 AluSg4 SINE + chr16:21894278-21894302 chr16 21894278 21894302 (AACA)n Simple_repeat + chr16:21895057-21895372 chr16 21895057 21895372 L2 LINE + chr16:21901689-21901741 chr16 21901689 21901741 L2a LINE - chr16:21903523-21904262 chr16 21903523 21904262 MER58A DNA - chr16:21903600-21903894 chr16 21903600 21903894 AluSz SINE + chr16:21904267-21904329 chr16 21904267 21904329 L1MB8 LINE + chr16:21904337-21904391 chr16 21904337 21904391 MER58D DNA - chr16:21904856-21905167 chr16 21904856 21905167 AluSx SINE - chr16:21905307-21905623 chr16 21905307 21905623 AluSx1 SINE + chr16:21905658-21905997 chr16 21905658 21905997 Tigger4b DNA - chr16:21905931-21906397 chr16 21905931 21906397 Tigger4a DNA + chr16:21906029-21906329 chr16 21906029 21906329 AluSq2 SINE + chr16:21908616-21908787 chr16 21908616 21908787 L1MC5 LINE + chr16:21911140-21911434 chr16 21911140 21911434 AluJr SINE + chr16:21911480-21911682 chr16 21911480 21911682 AluJr SINE + chr16:21911684-21911705 chr16 21911684 21911705 (A)n Simple_repeat + chr16:21911705-21911858 chr16 21911705 21911858 FRAM SINE + chr16:21912539-21912585 chr16 21912539 21912585 A-rich Low_complexity + chr16:21912725-21912755 chr16 21912725 21912755 (ATAC)n Simple_repeat + chr16:21916527-21916665 chr16 21916527 21916665 AluSz6 SINE + chr16:21916667-21916690 chr16 21916667 21916690 (AATA)n Simple_repeat + chr16:21917048-21917101 chr16 21917048 21917101 (ATAA)n Simple_repeat + chr16:21917604-21917854 chr16 21917604 21917854 L1MC4 LINE + chr16:21921772-21922071 chr16 21921772 21922071 AluSp SINE - chr16:21922140-21922258 chr16 21922140 21922258 FRAM SINE - chr16:21925896-21926070 chr16 21925896 21926070 L1PA11 LINE + chr16:21928293-21928320 chr16 21928293 21928320 (AAAAGA)n Simple_repeat + chr16:21929245-21929442 chr16 21929245 21929442 MIRb SINE + chr16:21934082-21934190 chr16 21934082 21934190 MIRb SINE - chr16:21934704-21934733 chr16 21934704 21934733 (TAATAA)n Simple_repeat + chr16:21938275-21938328 chr16 21938275 21938328 (AC)n Simple_repeat + chr16:21940171-21940235 chr16 21940171 21940235 MADE1 DNA + chr16:2204373-2204643 chr16 2204373 2204643 AluSp SINE + chr16:22298779-22298886 chr16 22298779 22298886 MIR3 SINE - chr16:22445019-22445231 chr16 22445019 22445231 MER20 DNA + chr16:22445435-22445650 chr16 22445435 22445650 MIRb SINE + chr16:22448133-22448188 chr16 22448133 22448188 A-rich Low_complexity + chr16:22480623-22480653 chr16 22480623 22480653 (ATGT)n Simple_repeat + chr16:22483255-22483548 chr16 22483255 22483548 AluJo SINE + chr16:22484347-22484379 chr16 22484347 22484379 (T)n Simple_repeat + chr16:22484379-22484424 chr16 22484379 22484424 7SLRNA srpRNA - chr16:22484426-22484554 chr16 22484426 22484554 AluY SINE - chr16:22484595-22484766 chr16 22484595 22484766 L1MC5 LINE - chr16:22484925-22485426 chr16 22484925 22485426 L1MC2 LINE - chr16:22486969-22487412 chr16 22486969 22487412 Tigger4a DNA - chr16:22487037-22487337 chr16 22487037 22487337 AluSq2 SINE - chr16:22487369-22487708 chr16 22487369 22487708 Tigger4b DNA + chr16:22487738-22487766 chr16 22487738 22487766 (T)n Simple_repeat + chr16:22487770-22488053 chr16 22487770 22488053 AluSx1 SINE - chr16:22488195-22488504 chr16 22488195 22488504 AluSx SINE + chr16:22488973-22489027 chr16 22488973 22489027 MER58D DNA + chr16:22489035-22489097 chr16 22489035 22489097 L1MB8 LINE - chr16:22489102-22489841 chr16 22489102 22489841 MER58A DNA + chr16:22489131-22489418 chr16 22489131 22489418 AluSx1 SINE + chr16:22489470-22489764 chr16 22489470 22489764 AluSz SINE - chr16:22498418-22498733 chr16 22498418 22498733 L2 LINE - chr16:22499488-22499516 chr16 22499488 22499516 (TGTT)n Simple_repeat + chr16:22501083-22501381 chr16 22501083 22501381 AluSg4 SINE - chr16:22553134-22553814 chr16 22553134 22553814 AluJb SINE - chr16:22553226-22553558 chr16 22553226 22553558 AluSx SINE - chr16:22553558-22553695 chr16 22553558 22553695 AluJo SINE - chr16:22555992-22556382 chr16 22555992 22556382 MER1B DNA - chr16:23464686-23464712 chr16 23464686 23464712 SVA_A Retroposon - chr16:23681263-23681376 chr16 23681263 23681376 L2c LINE + chr16:23682218-23682390 chr16 23682218 23682390 L2b LINE - chr16:23682403-23682628 chr16 23682403 23682628 MIR SINE + chr16:23682809-23682992 chr16 23682809 23682992 MIRb SINE - chr16:23683650-23683821 chr16 23683650 23683821 MIR SINE - chr16:23683929-23684091 chr16 23683929 23684091 MIRb SINE + chr16:23684166-23684465 chr16 23684166 23684465 AluYm1 SINE + chr16:23684467-23684486 chr16 23684467 23684486 (ACA)n Simple_repeat + chr16:23684599-23684727 chr16 23684599 23684727 AluJo SINE - chr16:23684846-23684900 chr16 23684846 23684900 AluJb SINE + chr16:23684911-23688610 chr16 23684911 23688610 MER68-int LTR + chr16:23686058-23686439 chr16 23686058 23686439 MLT1B LTR - chr16:23686539-23686838 chr16 23686539 23686838 AluSz SINE + chr16:25269869-25269925 chr16 25269869 25269925 L2a LINE - chr16:25269943-25271678 chr16 25269943 25271678 LTR73 LTR - chr16:25270117-25271238 chr16 25270117 25271238 MER4E1 LTR - chr16:25270902-25271213 chr16 25270902 25271213 AluSz6 SINE + chr16:25271280-25271363 chr16 25271280 25271363 FLAM_C SINE + chr16:25274807-25274863 chr16 25274807 25274863 (AT)n Simple_repeat + chr16:25275417-25275725 chr16 25275417 25275725 AluJr SINE + chr16:25275758-25275811 chr16 25275758 25275811 MLT1K LTR - chr16:25282014-25282040 chr16 25282014 25282040 (AC)n Simple_repeat + chr16:28296085-28296129 chr16 28296085 28296129 (CTT)n Simple_repeat + chr16:28297149-28297201 chr16 28297149 28297201 MLT1L LTR - chr16:28374830-28374978 chr16 28374830 28374978 AluSz6 SINE + chr16:28379480-28379514 chr16 28379480 28379514 (CATCGCC)n Simple_repeat + chr16:28379545-28379589 chr16 28379545 28379589 MIR1_Amn SINE + chr16:28380792-28380887 chr16 28380792 28380887 L1MB8 LINE + chr16:28382240-28382290 chr16 28382240 28382290 MLT1I LTR - chr16:28383581-28383712 chr16 28383581 28383712 AluSc SINE + chr16:28384734-28384774 chr16 28384734 28384774 (TG)n Simple_repeat + chr16:28385121-28385151 chr16 28385121 28385151 GA-rich Low_complexity + chr16:28385857-28385896 chr16 28385857 28385896 (GCT)n Simple_repeat + chr16:28386687-28386722 chr16 28386687 28386722 (AC)n Simple_repeat + chr16:28417203-28417238 chr16 28417203 28417238 (AC)n Simple_repeat + chr16:28417621-28417645 chr16 28417621 28417645 (GT)n Simple_repeat + chr16:28418873-28418907 chr16 28418873 28418907 (TTTTTTC)n Simple_repeat + chr16:28420208-28420243 chr16 28420208 28420243 (T)n Simple_repeat + chr16:28420243-28420265 chr16 28420243 28420265 (TTTTTA)n Simple_repeat + chr16:28421490-28421505 chr16 28421490 28421505 (TAT)n Simple_repeat + chr16:28421798-28421815 chr16 28421798 28421815 (TAT)n Simple_repeat + chr16:28440617-28440657 chr16 28440617 28440657 (AAAAT)n Simple_repeat + chr16:28467647-28467679 chr16 28467647 28467679 (TATT)n Simple_repeat + chr16:28670016-28670048 chr16 28670016 28670048 (AATA)n Simple_repeat + chr16:28671243-28671426 chr16 28671243 28671426 AluJr SINE - chr16:28671779-28671830 chr16 28671779 28671830 (CCTG)n Simple_repeat + chr16:28672681-28672829 chr16 28672681 28672829 AluSc SINE - chr16:28673848-28673893 chr16 28673848 28673893 (TG)n Simple_repeat + chr16:28673897-28674014 chr16 28673897 28674014 AluJo SINE - chr16:28749927-28750089 chr16 28749927 28750089 AluSp SINE + chr16:28750489-28750781 chr16 28750489 28750781 AluSx SINE + chr16:28751199-28751234 chr16 28751199 28751234 (TG)n Simple_repeat + chr16:28752025-28752070 chr16 28752025 28752070 (AGC)n Simple_repeat + chr16:28752776-28752806 chr16 28752776 28752806 (TC)n Simple_repeat + chr16:28752873-28753153 chr16 28752873 28753153 AluSq SINE + chr16:28753153-28753191 chr16 28753153 28753191 (CA)n Simple_repeat + chr16:28753191-28753382 chr16 28753191 28753382 AluSx4 SINE + chr16:28753924-28754209 chr16 28753924 28754209 AluSc8 SINE - chr16:28754213-28754344 chr16 28754213 28754344 AluSc SINE - chr16:28754348-28754650 chr16 28754348 28754650 AluSp SINE - chr16:28754847-28755139 chr16 28754847 28755139 AluY SINE - chr16:28755637-28755687 chr16 28755637 28755687 MLT1I LTR + chr16:28756463-28756735 chr16 28756463 28756735 AluSp SINE - chr16:28756738-28757033 chr16 28756738 28757033 AluSg7 SINE - chr16:28757040-28757135 chr16 28757040 28757135 L1MB8 LINE - chr16:28758344-28758388 chr16 28758344 28758388 MIR1_Amn SINE - chr16:28758933-28759235 chr16 28758933 28759235 AluSx1 SINE - chr16:28762958-28763106 chr16 28762958 28763106 AluSz6 SINE - chr1:62917485-62917506 chr1 62917485 62917506 (TA)n Simple_repeat + chr16:29415582-29415636 chr16 29415582 29415636 L2b LINE + chr16:29415638-29415821 chr16 29415638 29415821 MIR SINE + chr16:29416641-29416755 chr16 29416641 29416755 L2a LINE - chr16:29416763-29416992 chr16 29416763 29416992 MIRb SINE - chr16:29417180-29417723 chr16 29417180 29417723 MER101-int LTR + chr16:29417756-29418049 chr16 29417756 29418049 AluSx SINE + chr16:29418281-29418589 chr16 29418281 29418589 AluY SINE - chr16:29418592-29418715 chr16 29418592 29418715 AluYj4 SINE - chr16:29418723-29419034 chr16 29418723 29419034 AluSz SINE - chr16:29419411-29419537 chr16 29419411 29419537 FLAM_C SINE + chr16:29419541-29419806 chr16 29419541 29419806 AluYm1 SINE + chr16:29420297-29420502 chr16 29420297 29420502 AluJo SINE + chr16:29420598-29420830 chr16 29420598 29420830 AluSz SINE + chr16:29421072-29421382 chr16 29421072 29421382 AluSz SINE + chr16:29421896-29422024 chr16 29421896 29422024 AluYk2 SINE - chr16:29422024-29422308 chr16 29422024 29422308 AluSx SINE - chr16:29422310-29422509 chr16 29422310 29422509 MER4D1 LTR - chr16:29422526-29422832 chr16 29422526 29422832 AluSp SINE + chr16:29423280-29423626 chr16 29423280 29423626 MER83B LTR + chr16:29423626-29423991 chr16 29423626 29423991 THE1B LTR + chr16:29424403-29425258 chr16 29424403 29425258 MER41A LTR + chr16:29424838-29425134 chr16 29424838 29425134 AluY SINE - chr16:29425337-29425443 chr16 29425337 29425443 Charlie19a DNA + chr16:29425842-29426015 chr16 29425842 29426015 AluSx SINE + chr16:29426423-29426813 chr16 29426423 29426813 MER1B DNA + chr16:29429025-29430034 chr16 29429025 29430034 LTR7B LTR + chr16:29430034-29430215 chr16 29430034 29430215 AluSx1 SINE + chr16:29430215-29430669 chr16 29430215 29430669 LTR7B LTR + chr16:29430671-29430736 chr16 29430671 29430736 Alu SINE + chr16:29432114-29432421 chr16 29432114 29432421 AluSx SINE + chr16:29434526-29434687 chr16 29434526 29434687 AluJr4 SINE - chr16:29435290-29435588 chr16 29435290 29435588 AluY SINE - chr16:29435870-29436071 chr16 29435870 29436071 MIRb SINE - chr16:29436399-29437068 chr16 29436399 29437068 L1ME1 LINE + chr16:29440741-29440764 chr16 29440741 29440764 (AAAC)n Simple_repeat + chr16:29441577-29441834 chr16 29441577 29441834 L2b LINE + chr16:29449619-29449671 chr16 29449619 29449671 L2a LINE - chr16:29451451-29452190 chr16 29451451 29452190 MER58A DNA - chr16:29451528-29451822 chr16 29451528 29451822 AluSz SINE + chr16:29451874-29452161 chr16 29451874 29452161 AluSx1 SINE - chr16:29452195-29452257 chr16 29452195 29452257 L1MB8 LINE + chr16:29453239-29453536 chr16 29453239 29453536 AluSx1 SINE + chr16:29453570-29453909 chr16 29453570 29453909 Tigger4b DNA - chr16:29453843-29454305 chr16 29453843 29454305 Tigger4a DNA + chr16:29453941-29454237 chr16 29453941 29454237 AluSq2 SINE + chr16:29494871-29494960 chr16 29494871 29494960 (TTTGTTT)n Simple_repeat + chr16:29517303-29517427 chr16 29517303 29517427 L2b LINE + chr16:29517429-29517612 chr16 29517429 29517612 MIR SINE + chr16:29518429-29518543 chr16 29518429 29518543 L2a LINE - chr16:29518551-29518776 chr16 29518551 29518776 MIRb SINE - chr16:29518964-29519508 chr16 29518964 29519508 MER101-int LTR + chr16:29519511-29520064 chr16 29519511 29520064 MER101-int LTR + chr16:29519541-29519836 chr16 29519541 29519836 AluSx SINE + chr16:29520064-29520371 chr16 29520064 29520371 AluY SINE - chr16:29520374-29520497 chr16 29520374 29520497 AluYj4 SINE - chr16:29520504-29520812 chr16 29520504 29520812 AluSz SINE - chr16:29522375-29522607 chr16 29522375 29522607 AluSz SINE + chr16:29524101-29524300 chr16 29524101 29524300 MER4D1 LTR - chr16:29524317-29524601 chr16 29524317 29524601 AluSp SINE + chr16:29524601-29524628 chr16 29524601 29524628 (AAAT)n Simple_repeat + chr16:29525077-29525423 chr16 29525077 29525423 MER83B LTR + chr16:29525423-29525784 chr16 29525423 29525784 THE1B LTR + chr16:29525955-29527117 chr16 29525955 29527117 AluJb SINE + chr16:29526196-29527050 chr16 29526196 29527050 MER41A LTR + chr16:29526631-29526926 chr16 29526631 29526926 AluY SINE - chr16:29527122-29527228 chr16 29527122 29527228 Charlie19a DNA + chr16:29527629-29527802 chr16 29527629 29527802 AluSx SINE + chr16:29527813-29528120 chr16 29527813 29528120 AluJb SINE + chr16:29528140-29528165 chr16 29528140 29528165 (A)n Simple_repeat + chr16:29528221-29528608 chr16 29528221 29528608 MER1B DNA + chr16:29529242-29530799 chr16 29529242 29530799 L1PA5 LINE + chr16:29530821-29531830 chr16 29530821 29531830 LTR7B LTR + chr16:29531830-29532011 chr16 29531830 29532011 AluSx1 SINE + chr16:29532011-29532465 chr16 29532011 29532465 LTR7B LTR + chr16:29532467-29532532 chr16 29532467 29532532 Alu SINE + chr16:29533577-29533695 chr16 29533577 29533695 AluJo SINE + chr16:29533833-29534142 chr16 29533833 29534142 AluSx SINE + chr16:29534681-29534984 chr16 29534681 29534984 AluSz SINE + chr16:29535186-29535489 chr16 29535186 29535489 AluY SINE + chr16:29536270-29536428 chr16 29536270 29536428 AluJr4 SINE - chr16:29537039-29537339 chr16 29537039 29537339 AluY SINE - chr16:29537617-29537831 chr16 29537617 29537831 MIRb SINE - chr16:29538111-29538832 chr16 29538111 29538832 L1ME2 LINE + chr16:29542507-29542535 chr16 29542507 29542535 (AACA)n Simple_repeat + chr16:29543291-29543604 chr16 29543291 29543604 L2 LINE + chr16:29551384-29551436 chr16 29551384 29551436 L2a LINE - chr16:29553216-29553955 chr16 29553216 29553955 MER58A DNA - chr16:29553293-29553587 chr16 29553293 29553587 AluSz SINE + chr16:29553639-29553926 chr16 29553639 29553926 AluSx1 SINE - chr16:29553960-29554022 chr16 29553960 29554022 L1MB8 LINE + chr16:29555004-29555301 chr16 29555004 29555301 AluSx1 SINE + chr16:29555335-29555674 chr16 29555335 29555674 Tigger4b DNA - chr16:29555608-29556070 chr16 29555608 29556070 Tigger4a DNA + chr16:29555706-29556002 chr16 29555706 29556002 AluSq2 SINE + chr16:29560791-29561084 chr16 29560791 29561084 AluJb SINE + chr16:29561130-29561332 chr16 29561130 29561332 AluJr SINE + chr16:29561353-29561505 chr16 29561353 29561505 FRAM SINE + chr16:29562372-29562402 chr16 29562372 29562402 (ATAC)n Simple_repeat + chr16:29563976-29564267 chr16 29563976 29564267 AluSx1 SINE + chr16:29566601-29566635 chr16 29566601 29566635 (AATA)n Simple_repeat + chr16:29567167-29567475 chr16 29567167 29567475 AluSx SINE + chr16:29567542-29567793 chr16 29567542 29567793 L1MC5a LINE + chr16:29568006-29568296 chr16 29568006 29568296 AluJb SINE - chr16:29568497-29568792 chr16 29568497 29568792 AluSz SINE + chr16:29571785-29571969 chr16 29571785 29571969 L1ME2z LINE + chr16:29572049-29572353 chr16 29572049 29572353 AluSp SINE - chr16:29572422-29572540 chr16 29572422 29572540 FRAM SINE - chr16:29581841-29582124 chr16 29581841 29582124 AluJo SINE - chr16:29583467-29583739 chr16 29583467 29583739 AluJb SINE - chr16:29584171-29584276 chr16 29584171 29584276 MIR SINE - chr16:29584290-29584398 chr16 29584290 29584398 MIRb SINE - chr16:29584544-29584832 chr16 29584544 29584832 AluYm1 SINE - chr16:29584918-29584950 chr16 29584918 29584950 (AACAAA)n Simple_repeat + chr16:29587949-29588096 chr16 29587949 29588096 FRAM SINE - chr16:29590020-29590147 chr16 29590020 29590147 FLAM_A SINE + chr16:29592842-29592931 chr16 29592842 29592931 L1MA7 LINE + chr16:29592942-29593133 chr16 29592942 29593133 L1MA7 LINE + chr16:29596898-29596921 chr16 29596898 29596921 (A)n Simple_repeat + chr16:29598817-29599023 chr16 29598817 29599023 AluSg4 SINE - chr16:29599023-29599114 chr16 29599023 29599114 AluSx1 SINE + chr16:29599115-29599179 chr16 29599115 29599179 FRAM SINE + chr16:29599926-29599951 chr16 29599926 29599951 (AC)n Simple_repeat + chr16:29601793-29601857 chr16 29601793 29601857 MADE1 DNA + chr16:29602705-29603030 chr16 29602705 29603030 AluSx SINE - chr16:29606398-29606444 chr16 29606398 29606444 (GAG)n Simple_repeat + chr16:29609048-29609217 chr16 29609048 29609217 AluSp SINE - chr16:29609665-29609808 chr16 29609665 29609808 AluJr SINE + chr16:29609840-29609951 chr16 29609840 29609951 L1M5 LINE - chr16:29610038-29610065 chr16 29610038 29610065 A-rich Low_complexity + chr16:29610450-29610586 chr16 29610450 29610586 MER96 DNA - chr16:29610595-29610726 chr16 29610595 29610726 AluSz SINE + chr16:29611249-29611368 chr16 29611249 29611368 AluSq2 SINE - chr16:29611740-29611771 chr16 29611740 29611771 (CCAGC)n Simple_repeat + chr16:29612328-29612426 chr16 29612328 29612426 MER5A DNA - chr16:29615819-29615911 chr16 29615819 29615911 (TA)n Simple_repeat + chr16:29616995-29617040 chr16 29616995 29617040 MIR1_Amn SINE + chr16:29617785-29617833 chr16 29617785 29617833 (CTGGTCA)n Simple_repeat + chr16:29619769-29619816 chr16 29619769 29619816 (AAAT)n Simple_repeat + chr16:29620103-29620586 chr16 29620103 29620586 LTR22B LTR - chr16:29620739-29620769 chr16 29620739 29620769 (ACAC)n Simple_repeat + chr16:29621369-29621551 chr16 29621369 29621551 AluSz SINE + chr16:29624831-29624865 chr16 29624831 29624865 (CGCCCT)n Simple_repeat + chr1:6298284-6298445 chr1 6298284 6298445 MIRc SINE + chr16:30265940-30267105 chr16 30265940 30267105 AluJb SINE + chr16:30266181-30267035 chr16 30266181 30267035 MER41A LTR + chr16:30266603-30266911 chr16 30266603 30266911 AluY SINE - chr16:30267613-30267786 chr16 30267613 30267786 AluSx SINE + chr16:30267797-30268104 chr16 30267797 30268104 AluJb SINE + chr16:30268124-30268149 chr16 30268124 30268149 (A)n Simple_repeat + chr16:30268205-30268592 chr16 30268205 30268592 MER1B DNA + chr16:30269224-30270781 chr16 30269224 30270781 L1PA5 LINE + chr16:30270803-30271812 chr16 30270803 30271812 LTR7B LTR + chr16:30271812-30271993 chr16 30271812 30271993 AluSq SINE + chr16:30271993-30272447 chr16 30271993 30272447 LTR7B LTR + chr16:30272449-30272514 chr16 30272449 30272514 Alu SINE + chr16:30272517-30277506 chr16 30272517 30277506 L2a LINE + chr16:30273559-30273677 chr16 30273559 30273677 AluJo SINE + chr16:30273678-30274239 chr16 30273678 30274239 AluJo SINE + chr16:30276254-30276412 chr16 30276254 30276412 AluJr4 SINE - chr16:30277323-30277378 chr16 30277323 30277378 AluJr4 SINE - chr16:30277518-30277572 chr16 30277518 30277572 Alu SINE + chr16:30277601-30277815 chr16 30277601 30277815 MIRb SINE - chr16:30278095-30278816 chr16 30278095 30278816 L1ME2 LINE + chr16:30282492-30282520 chr16 30282492 30282520 (AACA)n Simple_repeat + chr16:30283275-30283588 chr16 30283275 30283588 L2 LINE + chr16:30291370-30291422 chr16 30291370 30291422 L2a LINE - chr16:30293216-30293955 chr16 30293216 30293955 MER58A DNA - chr16:30293293-30293587 chr16 30293293 30293587 AluSz SINE + chr16:30293639-30293926 chr16 30293639 30293926 AluSx1 SINE - chr16:30293960-30294022 chr16 30293960 30294022 L1MB8 LINE + chr16:30294030-30294084 chr16 30294030 30294084 MER58D DNA - chr16:30301375-30301527 chr16 30301375 30301527 FRAM SINE + chr16:30302204-30302250 chr16 30302204 30302250 A-rich Low_complexity + chr16:30302386-30302416 chr16 30302386 30302416 (ATAC)n Simple_repeat + chr16:30306162-30306299 chr16 30306162 30306299 AluSz6 SINE + chr16:30306300-30306334 chr16 30306300 30306334 (AATA)n Simple_repeat + chr16:30306866-30307174 chr16 30306866 30307174 AluSx SINE + chr16:30307241-30307492 chr16 30307241 30307492 L1MC5a LINE + chr16:30307706-30307996 chr16 30307706 30307996 AluJb SINE - chr16:30308194-30308499 chr16 30308194 30308499 AluSz SINE + chr16:30311496-30311680 chr16 30311496 30311680 L1ME2z LINE + chr16:30311760-30312060 chr16 30311760 30312060 AluSq2 SINE - chr16:30312129-30312247 chr16 30312129 30312247 FRAM SINE - chr16:30324010-30324118 chr16 30324010 30324118 MIRb SINE - chr16:30324638-30324665 chr16 30324638 30324665 (A)n Simple_repeat + chr16:30327673-30327705 chr16 30327673 30327705 (ATTT)n Simple_repeat + chr16:30327705-30327829 chr16 30327705 30327829 FRAM SINE - chr16:30336640-30336663 chr16 30336640 30336663 (A)n Simple_repeat + chr16:30338886-30339092 chr16 30338886 30339092 AluSg4 SINE - chr16:30339092-30339183 chr16 30339092 30339183 AluSx1 SINE + chr16:30339184-30339260 chr16 30339184 30339260 Alu SINE + chr16:30340007-30340044 chr16 30340007 30340044 (AC)n Simple_repeat + chr16:30341880-30341943 chr16 30341880 30341943 MADE1 DNA - chr16:30368360-30368396 chr16 30368360 30368396 (TCCC)n Simple_repeat + chr1:6305872-6305896 chr1 6305872 6305896 (CCCG)n Simple_repeat + chr16:30588072-30588099 chr16 30588072 30588099 (TAT)n Simple_repeat + chr1:6306553-6306724 chr1 6306553 6306724 MamTip1 DNA - chr16:31462092-31462131 chr16 31462092 31462131 (AAAAACC)n Simple_repeat + chr16:31464209-31464301 chr16 31464209 31464301 LTR47B4 LTR + chr16:31466363-31466406 chr16 31466363 31466406 (AC)n Simple_repeat + chr16:31467322-31467383 chr16 31467322 31467383 MIRb SINE - chr16:31468155-31468198 chr16 31468155 31468198 G-rich Low_complexity + chr16:31716443-31716474 chr16 31716443 31716474 (GT)n Simple_repeat + chr16:31720502-31720552 chr16 31720502 31720552 G-rich Low_complexity + chr16:31815174-31815210 chr16 31815174 31815210 (AC)n Simple_repeat + chr16:31815881-31815957 chr16 31815881 31815957 (TATTT)n Simple_repeat + chr16:31819012-31819049 chr16 31819012 31819049 A-rich Low_complexity + chr16:31823120-31823161 chr16 31823120 31823161 (TG)n Simple_repeat + chr16:31882002-31882023 chr16 31882002 31882023 (ACAA)n Simple_repeat + chr16:31882615-31882623 chr16 31882615 31882623 (CAGCAA)n Simple_repeat + chr16:3202609-3202679 chr16 3202609 3202679 tRNA-Pro-CCY tRNA - chr16:3202900-3202973 chr16 3202900 3202973 tRNA-Arg-AGG tRNA + chr16:3207405-3207478 chr16 3207405 3207478 tRNA-Lys-AAG tRNA - chr16:3663740-3663770 chr16 3663740 3663770 (TCCT)n Simple_repeat + chr16:3672901-3672949 chr16 3672901 3672949 L1P1 LINE + chr1:63787865-63787902 chr1 63787865 63787902 G-rich Low_complexity + chr1:63787937-63787986 chr1 63787937 63787986 (CCCACG)n Simple_repeat + chr1:63787963-63787988 chr1 63787963 63787988 (CACC)n Simple_repeat + chr16:47008806-47008861 chr16 47008806 47008861 L2d2 LINE + chr16:48709146-48709158 chr16 48709146 48709158 SVA_A Retroposon - chr1:65512869-65512881 chr1 65512869 65512881 (TT)n Simple_repeat + chr1:65520687-65521239 chr1 65520687 65521239 L1MB3 LINE - chr1:65523101-65523356 chr1 65523101 65523356 AluJb SINE + chr1:65524557-65524660 chr1 65524557 65524660 L2c LINE - chr1:65524672-65524763 chr1 65524672 65524763 MIR SINE - chr1:65524757-65524903 chr1 65524757 65524903 MIRc SINE - chr1:65526819-65527075 chr1 65526819 65527075 AluJb SINE + chr1:65529563-65529910 chr1 65529563 65529910 Charlie5 DNA - chr1:65529913-65530014 chr1 65529913 65530014 MER3 DNA - chr16:56700119-56700149 chr16 56700119 56700149 (TTAT)n Simple_repeat + chr16:58738634-58738647 chr16 58738634 58738647 A-rich Low_complexity + chr16:65261800-65261831 chr16 65261800 65261831 (TTAT)n Simple_repeat + chr1:665881-666034 chr1 665881 666034 LTR41 LTR - chr16:66922359-66922578 chr16 66922359 66922578 AluJr SINE - chr16:67971204-67971238 chr16 67971204 67971238 (TTCCATC)n Simple_repeat + chr16:70024742-70024773 chr16 70024742 70024773 (TCCA)n Simple_repeat + chr16:70024788-70025051 chr16 70024788 70025051 L1M5 LINE + chr16:70025652-70025696 chr16 70025652 70025696 A-rich Low_complexity + chr16:70026658-70026724 chr16 70026658 70026724 MIR SINE + chr16:70027941-70028262 chr16 70027941 70028262 MLT1I LTR + chr16:70028315-70028532 chr16 70028315 70028532 MIRb SINE + chr16:70029011-70029052 chr16 70029011 70029052 (TG)n Simple_repeat + chr16:70029367-70029666 chr16 70029367 70029666 AluSz6 SINE - chr16:70030200-70030380 chr16 70030200 70030380 MIRb SINE + chr16:70030551-70030605 chr16 70030551 70030605 L2b LINE + chr16:70030607-70030790 chr16 70030607 70030790 MIR SINE + chr16:70036315-70036346 chr16 70036315 70036346 (AAAT)n Simple_repeat + chr16:70040048-70040438 chr16 70040048 70040438 MER1B DNA + chr16:70043823-70043870 chr16 70043823 70043870 MER5B DNA - chr16:70047770-70047808 chr16 70047770 70047808 Charlie18a DNA - chr16:70048468-70048593 chr16 70048468 70048593 FLAM_C SINE - chr16:70049545-70049589 chr16 70049545 70049589 (TGAATTC)n Simple_repeat + chr16:70050357-70050405 chr16 70050357 70050405 MIRb SINE + chr16:70050439-70050465 chr16 70050439 70050465 (TGGTGA)n Simple_repeat + chr16:70051792-70051826 chr16 70051792 70051826 (T)n Simple_repeat + chr16:70052386-70052577 chr16 70052386 70052577 MIR SINE + chr16:70052773-70052844 chr16 70052773 70052844 MIRb SINE + chr16:70052860-70052900 chr16 70052860 70052900 GA-rich Low_complexity + chr16:70053699-70053718 chr16 70053699 70053718 (TG)n Simple_repeat + chr16:70054378-70054488 chr16 70054378 70054488 MIR SINE - chr16:70055913-70056082 chr16 70055913 70056082 MIRb SINE - chr16:70058786-70059465 chr16 70058786 70059465 L1M5 LINE - chr16:70058971-70059270 chr16 70058971 70059270 AluSx3 SINE - chr16:70059465-70059765 chr16 70059465 70059765 AluY SINE + chr16:70060125-70060295 chr16 70060125 70060295 EUTREP2 Unknown - chr16:70060464-70060748 chr16 70060464 70060748 AluSx1 SINE - chr16:70060775-70061079 chr16 70060775 70061079 AluSg SINE - chr16:70061299-70061470 chr16 70061299 70061470 AluYc SINE - chr16:70061473-70061749 chr16 70061473 70061749 AluY SINE - chr16:70061775-70062081 chr16 70061775 70062081 AluJb SINE - chr16:70062249-70062550 chr16 70062249 70062550 AluSx SINE + chr16:70062689-70062999 chr16 70062689 70062999 AluSx SINE + chr16:70063002-70063026 chr16 70063002 70063026 (A)n Simple_repeat + chr16:70064150-70064274 chr16 70064150 70064274 FLAM_A SINE - chr16:70064298-70064598 chr16 70064298 70064598 AluSx SINE + chr16:70068669-70068955 chr16 70068669 70068955 AluSx1 SINE + chr16:70069335-70069593 chr16 70069335 70069593 AluY SINE - chr16:70069639-70069997 chr16 70069639 70069997 MER2 DNA + chr16:70070096-70070269 chr16 70070096 70070269 MIR SINE - chr16:70073453-70073587 chr16 70073453 70073587 AluJo SINE - chr16:70073686-70073765 chr16 70073686 70073765 (TA)n Simple_repeat + chr16:70073765-70073787 chr16 70073765 70073787 (TATAA)n Simple_repeat + chr16:70075101-70075227 chr16 70075101 70075227 FLAM_A SINE - chr16:70075573-70075716 chr16 70075573 70075716 FRAM SINE - chr16:70076912-70076934 chr16 70076912 70076934 (A)n Simple_repeat + chr16:70077102-70077403 chr16 70077102 70077403 AluSz SINE - chr16:70077800-70078064 chr16 70077800 70078064 AluJr SINE - chr16:70078190-70078234 chr16 70078190 70078234 (AT)n Simple_repeat + chr16:70082390-70082474 chr16 70082390 70082474 MER94B DNA - chr16:70083302-70083351 chr16 70083302 70083351 (ACATAC)n Simple_repeat + chr16:70089283-70089350 chr16 70089283 70089350 Charlie19a DNA + chr16:70090140-70090441 chr16 70090140 70090441 AluSx3 SINE + chr16:70090441-70090479 chr16 70090441 70090479 (AT)n Simple_repeat + chr16:70090500-70090527 chr16 70090500 70090527 (CT)n Simple_repeat + chr16:70090699-70090777 chr16 70090699 70090777 L1ME2 LINE + chr16:70090786-70091073 chr16 70090786 70091073 AluJb SINE - chr16:70099084-70099201 chr16 70099084 70099201 MER5A1 DNA + chr16:70244105-70245622 chr16 70244105 70245622 L1PA5 LINE + chr16:70251153-70251313 chr16 70251153 70251313 AluJr4 SINE - chr16:70267683-70267735 chr16 70267683 70267735 L2a LINE - chr16:70268223-70268255 chr16 70268223 70268255 (ACAAAA)n Simple_repeat + chr16:70268309-70268352 chr16 70268309 70268352 A-rich Low_complexity + chr16:70269593-70269892 chr16 70269593 70269892 AluSz SINE + chr16:70270262-70270324 chr16 70270262 70270324 L1MB8 LINE + chr16:70270332-70270386 chr16 70270332 70270386 MER58D DNA - chr16:70270859-70271169 chr16 70270859 70271169 AluSz SINE - chr16:70276344-70276362 chr16 70276344 70276362 (A)n Simple_repeat + chr16:70277206-70277252 chr16 70277206 70277252 A-rich Low_complexity + chr16:70277392-70277422 chr16 70277392 70277422 (ATAC)n Simple_repeat + chr16:70281015-70281167 chr16 70281015 70281167 AluSz6 SINE + chr16:70281675-70281979 chr16 70281675 70281979 AluSz SINE + chr16:70282046-70282286 chr16 70282046 70282286 L1MC5a LINE + chr16:70282504-70282816 chr16 70282504 70282816 AluJb SINE - chr16:70282664-70282698 chr16 70282664 70282698 (T)n Simple_repeat + chr16:70283019-70283314 chr16 70283019 70283314 AluSz SINE + chr16:70283606-70283879 chr16 70283606 70283879 AluSx3 SINE + chr16:70609843-70609975 chr16 70609843 70609975 AluJo SINE + chr1:670833-671021 chr1 670833 671021 AluJb SINE + chr16:72336900-72336925 chr16 72336900 72336925 (AAC)n Simple_repeat + chr16:72413080-72413116 chr16 72413080 72413116 (TTA)n Simple_repeat + chr16:72459232-72459264 chr16 72459232 72459264 (A)n Simple_repeat + chr16:72462454-72462489 chr16 72462454 72462489 (TTTGTG)n Simple_repeat + chr16:72464698-72464774 chr16 72464698 72464774 MIRb SINE + chr16:72470273-72470335 chr16 72470273 72470335 (TTTTCT)n Simple_repeat + chr16:72470492-72470552 chr16 72470492 72470552 MER3 DNA + chr16:72494787-72494874 chr16 72494787 72494874 X7B_LINE LINE + chr16:72496050-72496091 chr16 72496050 72496091 A-rich Low_complexity + chr16:72500121-72500141 chr16 72500121 72500141 (TA)n Simple_repeat + chr16:72500142-72500167 chr16 72500142 72500167 (ACAC)n Simple_repeat + chr16:72500527-72500571 chr16 72500527 72500571 A-rich Low_complexity + chr16:72500571-72500588 chr16 72500571 72500588 GA-rich Low_complexity + chr16:72502118-72502160 chr16 72502118 72502160 (TGTATA)n Simple_repeat + chr16:72503006-72503072 chr16 72503006 72503072 (ATTTCT)n Simple_repeat + chr16:72503018-72503055 chr16 72503018 72503055 (CTTT)n Simple_repeat + chr16:72507555-72507582 chr16 72507555 72507582 L2b LINE + chr16:72518370-72518393 chr16 72518370 72518393 (A)n Simple_repeat + chr16:72524502-72524537 chr16 72524502 72524537 (ATGA)n Simple_repeat + chr16:72527212-72527247 chr16 72527212 72527247 (CA)n Simple_repeat + chr16:72537069-72537113 chr16 72537069 72537113 A-rich Low_complexity + chr16:72544865-72544992 chr16 72544865 72544992 MER117 DNA + chr16:72550261-72550359 chr16 72550261 72550359 MERX DNA + chr16:72564151-72564196 chr16 72564151 72564196 (TG)n Simple_repeat + chr16:72565694-72565796 chr16 72565694 72565796 MER3 DNA + chr16:72565852-72565992 chr16 72565852 72565992 MIR SINE - chr16:72567521-72567557 chr16 72567521 72567557 (TGTT)n Simple_repeat + chr16:72568138-72568190 chr16 72568138 72568190 (TTATA)n Simple_repeat + chr16:72569542-72569566 chr16 72569542 72569566 (TA)n Simple_repeat + chr16:72570248-72570336 chr16 72570248 72570336 (TA)n Simple_repeat + chr16:72572648-72572694 chr16 72572648 72572694 (CAC)n Simple_repeat + chr16:72573253-72573324 chr16 72573253 72573324 (TATA)n Simple_repeat + chr16:72573376-72573461 chr16 72573376 72573461 (TA)n Simple_repeat + chr16:72574963-72575000 chr16 72574963 72575000 (TTCCAT)n Simple_repeat + chr16:72584516-72584551 chr16 72584516 72584551 (AT)n Simple_repeat + chr16:72589127-72589153 chr16 72589127 72589153 (AAC)n Simple_repeat + chr16:72589165-72589256 chr16 72589165 72589256 L1MD LINE - chr16:72591368-72591440 chr16 72591368 72591440 L1ME4a LINE + chr16:72591589-72591694 chr16 72591589 72591694 L2 LINE - chr16:72597382-72597435 chr16 72597382 72597435 FLAM_A SINE + chr16:72601344-72601396 chr16 72601344 72601396 (GGAT)n Simple_repeat + chr16:72605543-72605588 chr16 72605543 72605588 L2d LINE - chr16:72605590-72605622 chr16 72605590 72605622 (A)n Simple_repeat + chr16:72608946-72608998 chr16 72608946 72608998 MER67B LTR - chr16:72612169-72612203 chr16 72612169 72612203 (CAA)n Simple_repeat + chr16:72612279-72612297 chr16 72612279 72612297 (A)n Simple_repeat + chr16:72621650-72621674 chr16 72621650 72621674 (A)n Simple_repeat + chr16:72627075-72627125 chr16 72627075 72627125 AluJb SINE + chr16:72627174-72627203 chr16 72627174 72627203 (CAGTA)n Simple_repeat + chr16:72628838-72628884 chr16 72628838 72628884 (ATAT)n Simple_repeat + chr16:72630157-72630187 chr16 72630157 72630187 (AATGAA)n Simple_repeat + chr16:72630485-72630504 chr16 72630485 72630504 (AATGAA)n Simple_repeat + chr16:72649232-72649357 chr16 72649232 72649357 L2d2 LINE - chr16:72649383-72649452 chr16 72649383 72649452 L2a LINE + chr16:72649519-72649576 chr16 72649519 72649576 Charlie17a DNA + chr16:72654475-72654503 chr16 72654475 72654503 (TTG)n Simple_repeat + chr16:72655722-72655752 chr16 72655722 72655752 (TG)n Simple_repeat + chr16:72657812-72657887 chr16 72657812 72657887 MADE2 DNA - chr16:72657936-72657962 chr16 72657936 72657962 (A)n Simple_repeat + chr16:72658554-72658583 chr16 72658554 72658583 (CA)n Simple_repeat + chr16:72660172-72660346 chr16 72660172 72660346 MIR3 SINE - chr16:72668175-72668336 chr16 72668175 72668336 UCON73 DNA - chr16:72669251-72669277 chr16 72669251 72669277 A-rich Low_complexity + chr16:72669642-72669682 chr16 72669642 72669682 A-rich Low_complexity + chr16:72674132-72674180 chr16 72674132 72674180 (AAAT)n Simple_repeat + chr16:72680538-72680748 chr16 72680538 72680748 AluJb SINE - chr16:72681512-72681586 chr16 72681512 72681586 L1ME4c LINE - chr16:72685337-72685372 chr16 72685337 72685372 (ATTT)n Simple_repeat + chr16:72685372-72685537 chr16 72685372 72685537 AluYc SINE - chr16:72692159-72692184 chr16 72692159 72692184 (T)n Simple_repeat + chr16:72695588-72695617 chr16 72695588 72695617 (AAAAC)n Simple_repeat + chr16:72696981-72697001 chr16 72696981 72697001 (TGTT)n Simple_repeat + chr16:72701382-72701446 chr16 72701382 72701446 MER102c DNA - chr16:72702266-72702379 chr16 72702266 72702379 MER5B DNA - chr16:72704542-72704603 chr16 72704542 72704603 MIRc SINE - chr16:72707401-72707462 chr16 72707401 72707462 U7 snRNA + chr16:72716109-72716136 chr16 72716109 72716136 (A)n Simple_repeat + chr16:72731419-72731477 chr16 72731419 72731477 L3 LINE + chr16:72732349-72732392 chr16 72732349 72732392 (CAA)n Simple_repeat + chr16:72734507-72734532 chr16 72734507 72734532 (TTG)n Simple_repeat + chr16:72735145-72735176 chr16 72735145 72735176 (TATT)n Simple_repeat + chr16:72751247-72751272 chr16 72751247 72751272 (T)n Simple_repeat + chr16:72781119-72781147 chr16 72781119 72781147 (T)n Simple_repeat + chr16:72787157-72787194 chr16 72787157 72787194 (T)n Simple_repeat + chr16:72790309-72790337 chr16 72790309 72790337 (TATGTA)n Simple_repeat + chr16:72790319-72790338 chr16 72790319 72790338 (TC)n Simple_repeat + chr16:72790337-72790372 chr16 72790337 72790372 (TA)n Simple_repeat + chr1:674244-674437 chr1 674244 674437 AluJb SINE + chr16:74340676-74340838 chr16 74340676 74340838 Tigger14a DNA - chr16:74346164-74346264 chr16 74346164 74346264 MER5A DNA + chr16:74347329-74347447 chr16 74347329 74347447 L1M5 LINE - chr16:74348497-74348860 chr16 74348497 74348860 THE1B LTR - chr16:74349378-74349401 chr16 74349378 74349401 (CAT)n Simple_repeat + chr16:74349548-74349631 chr16 74349548 74349631 AluSp SINE - chr16:74349643-74349791 chr16 74349643 74349791 L1ME5 LINE - chr16:74349791-74349929 chr16 74349791 74349929 MLT1J2 LTR + chr16:74350451-74351718 chr16 74350451 74351718 L1M5 LINE - chr16:74351734-74351996 chr16 74351734 74351996 AluJr SINE - chr16:74352799-74353420 chr16 74352799 74353420 L2b LINE + chr16:74353421-74353517 chr16 74353421 74353517 (TTC)n Simple_repeat + chr16:74356008-74356647 chr16 74356008 74356647 MER41B LTR + chr16:74357595-74357645 chr16 74357595 74357645 HAL1 LINE + chr16:74359548-74360121 chr16 74359548 74360121 L1MEi LINE - chr16:74360244-74360624 chr16 74360244 74360624 MER1B DNA - chr16:74362975-74363180 chr16 74362975 74363180 MIRb SINE - chr16:74365000-74365432 chr16 74365000 74365432 L2 LINE - chr16:74365452-74365469 chr16 74365452 74365469 (A)n Simple_repeat + chr16:74368065-74368098 chr16 74368065 74368098 (AAAT)n Simple_repeat + chr16:74368134-74372254 chr16 74368134 74372254 AluSx SINE - chr16:74368339-74368383 chr16 74368339 74368383 AluYj4 SINE - chr16:74377292-74377384 chr16 74377292 74377384 MARNA DNA + chr16:74394900-74395035 chr16 74394900 74395035 AluYk2 SINE + chr16:74395971-74396051 chr16 74395971 74396051 AluJo SINE - chr16:74398121-74398368 chr16 74398121 74398368 MIRb SINE + chr16:74398368-74398668 chr16 74398368 74398668 AluJr SINE - chr16:74399554-74400020 chr16 74399554 74400020 AluSx SINE + chr16:74399841-74399898 chr16 74399841 74399898 FLAM_A SINE - chr16:74410676-74411148 chr16 74410676 74411148 L1M5 LINE - chr16:74411761-74411768 chr16 74411761 74411768 (C)n Simple_repeat + chr16:74482172-74482218 chr16 74482172 74482218 L2c LINE - chr16:74482407-74482667 chr16 74482407 74482667 AluSx SINE + chr16:74482752-74483022 chr16 74482752 74483022 AluSc5 SINE + chr16:74484466-74484760 chr16 74484466 74484760 AluSg7 SINE + chr16:75262187-75262264 chr16 75262187 75262264 MIR3 SINE - chr16:75506974-75509327 chr16 75506974 75509327 MLT1H LTR - chr16:75507101-75507216 chr16 75507101 75507216 MLT1H LTR + chr16:75543894-75543939 chr16 75543894 75543939 (TG)n Simple_repeat + chr16:81995530-81995772 chr16 81995530 81995772 7SK RNA + chr16:84696124-84696276 chr16 84696124 84696276 MER5A DNA + chr16:84698426-84698643 chr16 84698426 84698643 AluJb SINE + chr16:85607154-85607186 chr16 85607154 85607186 MIRc SINE + chr16:8943854-8943994 chr16 8943854 8943994 MIR SINE + chr16:8945461-8945556 chr16 8945461 8945556 MER113A DNA - chr16:90039583-90039653 chr16 90039583 90039653 MIRc SINE + chr16:90044330-90044361 chr16 90044330 90044361 (CACCC)n Simple_repeat + chr16:90062577-90063012 chr16 90062577 90063012 L1MB7 LINE + chr16:90173928-90174007 chr16 90173928 90174007 Kanga1c DNA + chr16:90174914-90175006 chr16 90174914 90175006 Tigger3 DNA - chr16:90190334-90190395 chr16 90190334 90190395 (GATA)n Simple_repeat + chr16:90196403-90196486 chr16 90196403 90196486 MIR1_Amn SINE + chr16:90196746-90196797 chr16 90196746 90196797 AluSq2 SINE + chr16:90210391-90210498 chr16 90210391 90210498 Charlie29b DNA + chr16:90211000-90211103 chr16 90211000 90211103 U6 snRNA + chr16:90211144-90211528 chr16 90211144 90211528 L1ME4c LINE - chr16:90211268-90211388 chr16 90211268 90211388 AluJr4 SINE + chr16:9077853-9078134 chr16 9077853 9078134 AluSg SINE + chr1:693327-693447 chr1 693327 693447 AluJr4 SINE - chr1:693612-693715 chr1 693612 693715 U6 snRNA - chr1:694217-694324 chr1 694217 694324 Charlie29b DNA - chr16:9851728-9851756 chr16 9851728 9851756 A-rich Low_complexity + chr1:707894-707945 chr1 707894 707945 AluSq2 SINE - chr1:708224-708288 chr1 708224 708288 MIR1_Amn SINE - chr1:708631-708712 chr1 708631 708712 MIRb SINE - chr1:70906441-70907423 chr1 70906441 70907423 MER89 LTR - chr1:70906657-70907092 chr1 70906657 70907092 LTR47A LTR - chr1:70907455-70907890 chr1 70907455 70907890 MLT2C2 LTR - chr1:70907946-70908009 chr1 70907946 70908009 Tigger19b DNA + chr17:10579330-10579374 chr17 10579330 10579374 A-rich Low_complexity + chr17:10582068-10582734 chr17 10582068 10582734 MLT1B LTR - chr17:10582272-10582563 chr17 10582272 10582563 AluSx1 SINE - chr17:10583115-10583396 chr17 10583115 10583396 AluJr SINE - chr17:10583419-10583556 chr17 10583419 10583556 MER5A DNA + chr17:10658047-10658086 chr17 10658047 10658086 MIRc SINE + chr1:710705-710732 chr1 710705 710732 (GA)n Simple_repeat + chr17:13935762-13935806 chr17 13935762 13935806 (CAT)n Simple_repeat + chr17:13943055-13943086 chr17 13943055 13943086 (AATG)n Simple_repeat + chr17:13943653-13943689 chr17 13943653 13943689 (AATG)n Simple_repeat + chr17:13945079-13945116 chr17 13945079 13945116 A-rich Low_complexity + chr17:13949594-13949619 chr17 13949594 13949619 (TC)n Simple_repeat + chr17:13949619-13949661 chr17 13949619 13949661 (CA)n Simple_repeat + chr17:13951760-13951779 chr17 13951760 13951779 (TC)n Simple_repeat + chr17:13952069-13952119 chr17 13952069 13952119 MER91A DNA + chr17:13952879-13952919 chr17 13952879 13952919 (TTAT)n Simple_repeat + chr17:13956264-13956286 chr17 13956264 13956286 (CA)n Simple_repeat + chr17:13959911-13959940 chr17 13959911 13959940 (TAA)n Simple_repeat + chr17:13960754-13960789 chr17 13960754 13960789 (TTTTG)n Simple_repeat + chr17:13962786-13962826 chr17 13962786 13962826 (CATCAC)n Simple_repeat + chr17:13969548-13969630 chr17 13969548 13969630 MIR3 SINE + chr17:13970889-13970987 chr17 13970889 13970987 MIRc SINE + chr17:1420851-1420973 chr17 1420851 1420973 AluSp SINE - chr1:71525930-71525985 chr1 71525930 71525985 (TTCAGTA)n Simple_repeat + chr17:1609008-1609033 chr17 1609008 1609033 (T)n Simple_repeat + chr17:17286640-17286668 chr17 17286640 17286668 (T)n Simple_repeat + chr17:18455495-18455530 chr17 18455495 18455530 A-rich Low_complexity + chr17:18712683-18712758 chr17 18712683 18712758 MLT1J2 LTR + chr17:18965224-18965441 chr17 18965224 18965441 U3 snRNA + chr17:18967232-18967449 chr17 18967232 18967449 U3 snRNA - chr17:18993017-18993130 chr17 18993017 18993130 L2b LINE - chr17:18993133-18993203 chr17 18993133 18993203 L2b LINE - chr17:18993301-18993389 chr17 18993301 18993389 MIR SINE - chr17:18993803-18993889 chr17 18993803 18993889 MIRb SINE - chr17:18993932-18993970 chr17 18993932 18993970 (TTCA)n Simple_repeat + chr17:18993980-18994405 chr17 18993980 18994405 LTR16C LTR + chr17:18994408-18994755 chr17 18994408 18994755 L2b LINE - chr17:18995020-18995181 chr17 18995020 18995181 MIR1_Amn SINE - chr17:18995183-18995479 chr17 18995183 18995479 AluSx SINE + chr17:18995479-18995773 chr17 18995479 18995773 AluY SINE + chr17:18995777-18995797 chr17 18995777 18995797 (AAC)n Simple_repeat + chr17:18995990-18996236 chr17 18995990 18996236 MIR SINE + chr17:18999736-18999868 chr17 18999736 18999868 MIRb SINE - chr17:19000009-19000063 chr17 19000009 19000063 (TCTTTT)n Simple_repeat + chr17:19000065-19000404 chr17 19000065 19000404 AluJb SINE - chr17:19002821-19002958 chr17 19002821 19002958 AluSq2 SINE + chr17:19004561-19004717 chr17 19004561 19004717 MIRc SINE + chr17:19005182-19005265 chr17 19005182 19005265 AluJo SINE - chr17:19007849-19007859 chr17 19007849 19007859 (CTCT)n Simple_repeat + chr17:19009925-19009955 chr17 19009925 19009955 (CA)n Simple_repeat + chr17:19010088-19010699 chr17 19010088 19010699 AluSp SINE + chr17:19010226-19010535 chr17 19010226 19010535 AluSz SINE + chr17:19013223-19013410 chr17 19013223 19013410 L1P4 LINE + chr17:19015732-19015949 chr17 19015732 19015949 U3 snRNA - chr17:19062913-19062933 chr17 19062913 19062933 (TTG)n Simple_repeat + chr17:19062937-19063231 chr17 19062937 19063231 AluY SINE - chr17:19063231-19063527 chr17 19063231 19063527 AluSx SINE - chr17:19063529-19063690 chr17 19063529 19063690 MIR1_Amn SINE + chr17:19063955-19064302 chr17 19063955 19064302 L2b LINE + chr17:19064305-19064730 chr17 19064305 19064730 LTR16C LTR - chr17:19064738-19064957 chr17 19064738 19064957 MIRb SINE + chr17:19065321-19065409 chr17 19065321 19065409 MIR SINE + chr17:19065507-19065577 chr17 19065507 19065577 L2b LINE + chr17:19065580-19065693 chr17 19065580 19065693 L2c LINE + chr17:19093341-19093558 chr17 19093341 19093558 U3 snRNA - chr1:719463-719492 chr1 719463 719492 (TA)n Simple_repeat + chr17:20249330-20249356 chr17 20249330 20249356 (A)n Simple_repeat + chr17:20250235-20250267 chr17 20250235 20250267 (AACA)n Simple_repeat + chr17:25642185-25642265 chr17 25642185 25642265 OldhAT1 DNA - chr17:2633815-2633857 chr17 2633815 2633857 (TG)n Simple_repeat + chr17:2636307-2636355 chr17 2636307 2636355 (AAAT)n Simple_repeat + chr17:28930541-28930593 chr17 28930541 28930593 (AC)n Simple_repeat + chr17:28932617-28932724 chr17 28932617 28932724 FLAM_A SINE + chr17:28933105-28933242 chr17 28933105 28933242 L1M4 LINE - chr17:28933801-28933878 chr17 28933801 28933878 Charlie17a DNA - chr17:28934133-28934260 chr17 28934133 28934260 MLT1K LTR - chr17:28935607-28935619 chr17 28935607 28935619 (TA)n Simple_repeat + chr17:28935619-28935657 chr17 28935619 28935657 (TG)n Simple_repeat + chr17:28935657-28935754 chr17 28935657 28935754 (TA)n Simple_repeat + chr17:28936795-28937327 chr17 28936795 28937327 L2c LINE - chr17:28937332-28937458 chr17 28937332 28937458 MIRc SINE - chr17:28937528-28937694 chr17 28937528 28937694 MIRb SINE - chr17:28940469-28940513 chr17 28940469 28940513 (TA)n Simple_repeat + chr17:28940598-28940628 chr17 28940598 28940628 (TA)n Simple_repeat + chr17:28940628-28940646 chr17 28940628 28940646 (ATAG)n Simple_repeat + chr17:28941167-28941238 chr17 28941167 28941238 7SLRNA srpRNA + chr17:28943791-28943867 chr17 28943791 28943867 MIRc SINE + chr17:28943889-28943922 chr17 28943889 28943922 (A)n Simple_repeat + chr17:28944620-28944669 chr17 28944620 28944669 A-rich Low_complexity + chr17:28956837-28956886 chr17 28956837 28956886 (TAAGTTTT)n Simple_repeat + chr17:28957584-28957616 chr17 28957584 28957616 (T)n Simple_repeat + chr17:28957638-28957714 chr17 28957638 28957714 MIRc SINE - chr17:28960364-28960398 chr17 28960364 28960398 (AGAAC)n Simple_repeat + chr17:28960950-28961009 chr17 28960950 28961009 (T)n Simple_repeat + chr17:28988905-28988915 chr17 28988905 28988915 (AG)n Simple_repeat + chr17:28989208-28989224 chr17 28989208 28989224 (AG)n Simple_repeat + chr17:28993188-28993260 chr17 28993188 28993260 AluSz6 SINE + chr17:28994442-28994519 chr17 28994442 28994519 G-rich Low_complexity + chr17:28996598-28996758 chr17 28996598 28996758 MIR SINE + chr17:28998193-28998288 chr17 28998193 28998288 AluSx SINE + chr17:28998658-28998810 chr17 28998658 28998810 AluSx SINE - chr17:28998903-28998986 chr17 28998903 28998986 MIRb SINE + chr17:29003820-29003852 chr17 29003820 29003852 (TTAA)n Simple_repeat + chr17:29009929-29009978 chr17 29009929 29009978 (ACAAT)n Simple_repeat + chr17:29013541-29013598 chr17 29013541 29013598 (AC)n Simple_repeat + chr17:29014791-29014837 chr17 29014791 29014837 (TTAT)n Simple_repeat + chr17:29024343-29024385 chr17 29024343 29024385 L2b LINE + chr17:29025384-29025425 chr17 29025384 29025425 AluJr SINE + chr17:29025385-29025435 chr17 29025385 29025435 SVA_E Retroposon - chr17:29026362-29026400 chr17 29026362 29026400 (ATA)n Simple_repeat + chr17:29026562-29026604 chr17 29026562 29026604 (TTCC)n Simple_repeat + chr17:29032192-29032231 chr17 29032192 29032231 (AAAT)n Simple_repeat + chr17:29033176-29033219 chr17 29033176 29033219 (GC)n Simple_repeat + chr17:29033799-29033857 chr17 29033799 29033857 MIR1_Amn SINE - chr17:29034436-29034467 chr17 29034436 29034467 (CCCCAT)n Simple_repeat + chr17:29038046-29038106 chr17 29038046 29038106 (CT)n Simple_repeat + chr17:29041556-29041770 chr17 29041556 29041770 MER20 DNA - chr17:29046914-29047000 chr17 29046914 29047000 MIRb SINE - chr17:29051324-29051471 chr17 29051324 29051471 MIR SINE - chr17:29054845-29054931 chr17 29054845 29054931 MIR3 SINE - chr17:29056076-29056138 chr17 29056076 29056138 MIRc SINE - chr17:29059672-29059720 chr17 29059672 29059720 MIR SINE - chr17:29060909-29061038 chr17 29060909 29061038 FLAM_A SINE + chr17:29061146-29061445 chr17 29061146 29061445 AluSp SINE - chr17:29062355-29062655 chr17 29062355 29062655 AluSz SINE + chr17:29063806-29063918 chr17 29063806 29063918 AluY SINE - chr17:29063945-29064240 chr17 29063945 29064240 AluSq10 SINE - chr17:29064240-29064535 chr17 29064240 29064535 AluSc8 SINE - chr17:29064540-29064838 chr17 29064540 29064838 AluSx3 SINE - chr17:29065008-29065322 chr17 29065008 29065322 AluSq2 SINE - chr17:29065933-29066343 chr17 29065933 29066343 MER58D DNA - chr17:29066396-29066693 chr17 29066396 29066693 AluSg SINE - chr17:29066837-29067124 chr17 29066837 29067124 AluSp SINE - chr17:29067356-29067783 chr17 29067356 29067783 FLAM_C SINE + chr17:29068952-29069237 chr17 29068952 29069237 AluSp SINE + chr17:29069237-29069273 chr17 29069237 29069273 (AAAAC)n Simple_repeat + chr17:29069855-29069988 chr17 29069855 29069988 L2d2 LINE - chr17:29070480-29070596 chr17 29070480 29070596 L3 LINE - chr17:29072215-29072366 chr17 29072215 29072366 AluSg4 SINE - chr17:29072367-29072669 chr17 29072367 29072669 AluSz SINE - chr17:29073471-29073776 chr17 29073471 29073776 AluYe5 SINE - chr17:29074178-29074471 chr17 29074178 29074471 AluY SINE - chr17:29074471-29074772 chr17 29074471 29074772 AluSz SINE - chr17:29075246-29075550 chr17 29075246 29075550 AluSz SINE - chr17:29075799-29076098 chr17 29075799 29076098 AluSx1 SINE - chr17:29076101-29076395 chr17 29076101 29076395 AluJr SINE - chr17:29076401-29076719 chr17 29076401 29076719 AluSc5 SINE - chr17:29076766-29076791 chr17 29076766 29076791 (TATT)n Simple_repeat + chr17:29091869-29092187 chr17 29091869 29092187 AluSp SINE - chr17:29092295-29092423 chr17 29092295 29092423 FLAM_A SINE + chr17:29092459-29092754 chr17 29092459 29092754 AluSz SINE + chr17:29092800-29093088 chr17 29092800 29093088 AluJr SINE - chr17:29093113-29093280 chr17 29093113 29093280 FRAM SINE + chr17:29094319-29094597 chr17 29094319 29094597 AluJb SINE + chr17:29094627-29094876 chr17 29094627 29094876 AluYk2 SINE + chr17:29096208-29096365 chr17 29096208 29096365 L1ME2z LINE - chr17:29096404-29096544 chr17 29096404 29096544 L2c LINE - chr17:29097190-29097368 chr17 29097190 29097368 L2a LINE - chr17:29152014-29152055 chr17 29152014 29152055 MIR SINE - chr17:29152186-29152230 chr17 29152186 29152230 (TAC)n Simple_repeat + chr17:29223450-29223626 chr17 29223450 29223626 FRAM SINE - chr17:29223627-29223932 chr17 29223627 29223932 AluSp SINE - chr17:29223987-29224172 chr17 29223987 29224172 L2 LINE - chr17:29224353-29224464 chr17 29224353 29224464 FLAM_A SINE - chr17:29224990-29225276 chr17 29224990 29225276 AluJr SINE + chr17:29225854-29225963 chr17 29225854 29225963 AluJo SINE - chr17:29246116-29246151 chr17 29246116 29246151 (T)n Simple_repeat + chr17:29246482-29246550 chr17 29246482 29246550 A-rich Low_complexity + chr17:29331396-29331440 chr17 29331396 29331440 (AAAAG)n Simple_repeat + chr17:29333709-29333747 chr17 29333709 29333747 (TC)n Simple_repeat + chr17:29335709-29335762 chr17 29335709 29335762 (CCG)n Simple_repeat + chr17:29338459-29338501 chr17 29338459 29338501 (AC)n Simple_repeat + chr17:29340544-29340579 chr17 29340544 29340579 (TG)n Simple_repeat + chr17:29349089-29349099 chr17 29349089 29349099 (TA)n Simple_repeat + chr17:29354658-29354729 chr17 29354658 29354729 7SLRNA srpRNA + chr17:29877092-29877164 chr17 29877092 29877164 tRNA-Thr-ACG tRNA + chr17:30410553-30410630 chr17 30410553 30410630 G-rich Low_complexity + chr17:30412714-30412852 chr17 30412714 30412852 MIR SINE + chr17:30412916-30413001 chr17 30412916 30413001 L2a LINE + chr17:30413001-30413294 chr17 30413001 30413294 AluSx SINE - chr17:30413955-30414099 chr17 30413955 30414099 MIR SINE + chr17:30414102-30414236 chr17 30414102 30414236 FLAM_A SINE + chr17:30414295-30414390 chr17 30414295 30414390 AluSq2 SINE + chr17:30414760-30414912 chr17 30414760 30414912 AluSx SINE - chr17:30415005-30415088 chr17 30415005 30415088 MIRb SINE + chr17:30415502-30415714 chr17 30415502 30415714 MER20 DNA - chr17:30416699-30416827 chr17 30416699 30416827 MER5A DNA + chr17:30417335-30417646 chr17 30417335 30417646 AluY SINE + chr17:30418317-30418495 chr17 30418317 30418495 MER58C DNA - chr17:30418677-30418782 chr17 30418677 30418782 MIR3 SINE - chr17:30419041-30419061 chr17 30419041 30419061 (CCA)n Simple_repeat + chr17:30419621-30419655 chr17 30419621 30419655 (TTTAA)n Simple_repeat + chr17:30419657-30419771 chr17 30419657 30419771 AluJo SINE - chr17:30420248-30420446 chr17 30420248 30420446 AluSq2 SINE - chr17:30422252-30422315 chr17 30422252 30422315 L1M LINE + chr17:30422604-30422822 chr17 30422604 30422822 L2d LINE + chr17:30422959-30423184 chr17 30422959 30423184 MIR SINE - chr17:30713411-30713494 chr17 30713411 30713494 MER102b DNA - chr17:33735165-33735451 chr17 33735165 33735451 AluSq2 SINE + chr17:33735842-33736121 chr17 33735842 33736121 AluJr SINE + chr17:33736122-33736609 chr17 33736122 33736609 HERVL74-int LTR + chr17:33736666-33736703 chr17 33736666 33736703 MER74B LTR + chr17:33737264-33737672 chr17 33737264 33737672 HAL1b LINE - chr17:33895591-33896921 chr17 33895591 33896921 L2d2 LINE - chr17:33895853-33896160 chr17 33895853 33896160 AluSg SINE - chr17:33896994-33897295 chr17 33896994 33897295 AluSz SINE + chr17:33898359-33898651 chr17 33898359 33898651 AluSz SINE + chr17:33898653-33898924 chr17 33898653 33898924 AluSx4 SINE + chr17:33899091-33899201 chr17 33899091 33899201 MIR3 SINE + chr17:33899330-33899591 chr17 33899330 33899591 AluSz SINE + chr17:33899600-33899885 chr17 33899600 33899885 AluJr SINE + chr17:33899935-33900206 chr17 33899935 33900206 AluJr4 SINE + chr17:33900231-33900537 chr17 33900231 33900537 AluJb SINE + chr17:33901006-33901315 chr17 33901006 33901315 AluSz SINE + chr17:34511486-34511546 chr17 34511486 34511546 G-rich Low_complexity + chr17:34511656-34511729 chr17 34511656 34511729 MIRb SINE + chr17:34513878-34513959 chr17 34513878 34513959 MER5B DNA + chr17:34517361-34517412 chr17 34517361 34517412 L2 LINE + chr17:34520288-34520339 chr17 34520288 34520339 (GT)n Simple_repeat + chr17:34527746-34527836 chr17 34527746 34527836 L2a LINE + chr17:34528076-34528100 chr17 34528076 34528100 (CA)n Simple_repeat + chr17:34531119-34531152 chr17 34531119 34531152 (TAT)n Simple_repeat + chr17:34531578-34531638 chr17 34531578 34531638 (AT)n Simple_repeat + chr17:34532048-34532114 chr17 34532048 34532114 L2a LINE + chr17:34534366-34534407 chr17 34534366 34534407 OldhAT1 DNA + chr17:36557761-36557837 chr17 36557761 36557837 L2d2 LINE - chr17:36558706-36558997 chr17 36558706 36558997 AluSg SINE + chr17:36559832-36559882 chr17 36559832 36559882 (GT)n Simple_repeat + chr17:36560221-36560254 chr17 36560221 36560254 (A)n Simple_repeat + chr17:37017935-37018008 chr17 37017935 37018008 tRNA-Cys-TGY tRNA - chr17:37082155-37082182 chr17 37082155 37082182 (A)n Simple_repeat + chr17:3709951-3710147 chr17 3709951 3710147 Charlie14a DNA + chr17:3710187-3710304 chr17 3710187 3710304 Charlie14a DNA + chr17:3710821-3710978 chr17 3710821 3710978 L2c LINE - chr17:3711070-3712230 chr17 3711070 3712230 L2b LINE - chr17:3711233-3711710 chr17 3711233 3711710 MamRep137 DNA + chr17:3712036-3712130 chr17 3712036 3712130 FRAM SINE - chr17:3712230-3713472 chr17 3712230 3713472 L1MB8 LINE + chr17:3712278-3712296 chr17 3712278 3712296 SVA_A Retroposon - chr17:3712296-3712435 chr17 3712296 3712435 AluJb SINE + chr17:3712717-3713024 chr17 3712717 3713024 AluSp SINE + chr17:37310742-37310815 chr17 37310742 37310815 tRNA-Cys-TGY tRNA - chr17:40007397-40007488 chr17 40007397 40007488 AluJr SINE + chr17:40007488-40007510 chr17 40007488 40007510 SVA_E Retroposon - chr17:40007573-40007867 chr17 40007573 40007867 AluSg SINE + chr17:40008272-40008568 chr17 40008272 40008568 AluJr SINE - chr17:40008760-40009058 chr17 40008760 40009058 AluSq SINE + chr17:41155572-41155736 chr17 41155572 41155736 MER5A DNA - chr17:41305907-41305921 chr17 41305907 41305921 (AAT)n Simple_repeat + chr17:41400485-41401528 chr17 41400485 41401528 LTR13 LTR - chr17:41445184-41445222 chr17 41445184 41445222 (AC)n Simple_repeat + chr17:41445275-41445450 chr17 41445275 41445450 U2 snRNA - chr17:41464597-41464785 chr17 41464597 41464785 U2 snRNA - chr17:42262367-42262445 chr17 42262367 42262445 L1MB4 LINE + chr17:43235460-43235480 chr17 43235460 43235480 (A)n Simple_repeat + chr17:43586144-43586241 chr17 43586144 43586241 MER91A DNA - chr17:43597702-43597871 chr17 43597702 43597871 MIRc SINE + chr17:43613771-43613835 chr17 43613771 43613835 L5 LINE - chr17:43614567-43614710 chr17 43614567 43614710 L2a LINE + chr17:43616357-43616403 chr17 43616357 43616403 MIR1_Amn SINE + chr17:43686351-43686369 chr17 43686351 43686369 (A)n Simple_repeat + chr17:43698040-43698112 chr17 43698040 43698112 G-rich Low_complexity + chr17:43698664-43698725 chr17 43698664 43698725 Plat_L3 LINE - chr17:44328118-44328190 chr17 44328118 44328190 FLAM_C SINE + chr17:44328190-44328252 chr17 44328190 44328252 (CTTCTC)n Simple_repeat + chr17:44328383-44328481 chr17 44328383 44328481 FRAM SINE + chr17:44328542-44328596 chr17 44328542 44328596 MER20 DNA + chr17:44331753-44331803 chr17 44331753 44331803 (ATTT)n Simple_repeat + chr17:44336385-44336419 chr17 44336385 44336419 (T)n Simple_repeat + chr17:44339101-44339136 chr17 44339101 44339136 GA-rich Low_complexity + chr17:44339725-44339750 chr17 44339725 44339750 (TCT)n Simple_repeat + chr17:44341376-44341430 chr17 44341376 44341430 A-rich Low_complexity + chr17:44341650-44341682 chr17 44341650 44341682 L2d2 LINE + chr17:44342760-44342834 chr17 44342760 44342834 (TCC)n Simple_repeat + chr17:44344384-44344426 chr17 44344384 44344426 (GCCTCA)n Simple_repeat + chr17:44347189-44347215 chr17 44347189 44347215 (TGTTT)n Simple_repeat + chr17:44350496-44350525 chr17 44350496 44350525 (ATAT)n Simple_repeat + chr17:44571740-44571910 chr17 44571740 44571910 MER58B DNA - chr17:45125413-45125430 chr17 45125413 45125430 (T)n Simple_repeat + chr17:45125452-45125528 chr17 45125452 45125528 MIRc SINE - chr17:45131172-45131269 chr17 45131172 45131269 MER91A DNA + chr17:45152507-45152524 chr17 45152507 45152524 (T)n Simple_repeat + chr17:45711765-45711789 chr17 45711765 45711789 (TTTA)n Simple_repeat + chr17:45726416-45726493 chr17 45726416 45726493 MIR3 SINE + chr17:46124296-46124348 chr17 46124296 46124348 FLAM_C SINE + chr17:46143991-46144015 chr17 46143991 46144015 (A)n Simple_repeat + chr17:47072421-47072470 chr17 47072421 47072470 L2a LINE - chr17:47074724-47074745 chr17 47074724 47074745 (T)n Simple_repeat + chr17:47907247-47907539 chr17 47907247 47907539 AluSx1 SINE - chr17:47907541-47907570 chr17 47907541 47907570 (T)n Simple_repeat + chr17:47907580-47907848 chr17 47907580 47907848 AluSz SINE - chr17:47907942-47908151 chr17 47907942 47908151 MIRb SINE - chr17:47907996-47908042 chr17 47907996 47908042 MIRc SINE - chr17:47908381-47908654 chr17 47908381 47908654 AluSz6 SINE + chr17:47908763-47908952 chr17 47908763 47908952 MIRb SINE - chr17:47909029-47909320 chr17 47909029 47909320 AluY SINE - chr17:47909321-47909617 chr17 47909321 47909617 AluSx1 SINE - chr17:47910854-47911227 chr17 47910854 47911227 MLT1H2 LTR + chr17:47911490-47911511 chr17 47911490 47911511 (TGTA)n Simple_repeat + chr17:47926243-47926280 chr17 47926243 47926280 (ATCC)n Simple_repeat + chr17:48228039-48228064 chr17 48228039 48228064 (A)n Simple_repeat + chr17:5079287-5079317 chr17 5079287 5079317 (TTGT)n Simple_repeat + chr17:56088085-56088137 chr17 56088085 56088137 HSMAR2 DNA + chr17:56173152-56175113 chr17 56173152 56175113 MLT2C1 LTR - chr17:57918527-57918559 chr17 57918527 57918559 (T)n Simple_repeat + chr17:57921001-57921084 chr17 57921001 57921084 AluJr4 SINE + chr17:58075112-58075282 chr17 58075112 58075282 FAM SINE + chr17:58179309-58179432 chr17 58179309 58179432 X5a_DNA DNA + chr17:58603830-58603890 chr17 58603830 58603890 Charlie24 DNA - chr17:58604991-58605070 chr17 58604991 58605070 MER53 DNA - chr17:58605197-58605234 chr17 58605197 58605234 MER53 DNA + chr17:60142770-60142852 chr17 60142770 60142852 (CCGG)n Simple_repeat + chr17:60527608-60527637 chr17 60527608 60527637 (T)n Simple_repeat + chr17:60527640-60527803 chr17 60527640 60527803 AluJr4 SINE - chr17:60527903-60528192 chr17 60527903 60528192 AluSq2 SINE + chr17:60528413-60528502 chr17 60528413 60528502 AluJr SINE + chr17:60691085-60691117 chr17 60691085 60691117 (TG)n Simple_repeat + chr17:61685915-61685971 chr17 61685915 61685971 L2a LINE - chr17:62223517-62223555 chr17 62223517 62223555 G-rich Low_complexity + chr17:62493710-62493775 chr17 62493710 62493775 MER5A DNA + chr17:62539384-62539691 chr17 62539384 62539691 AluSx SINE - chr17:62791560-62791584 chr17 62791560 62791584 (GGTG)n Simple_repeat + chr17:62966012-62966053 chr17 62966012 62966053 (AATA)n Simple_repeat + chr17:63096961-63096997 chr17 63096961 63096997 (CCCGC)n Simple_repeat + chr17:63097697-63097766 chr17 63097697 63097766 L2a LINE - chr17:63097894-63098192 chr17 63097894 63098192 AluSz SINE - chr17:63098638-63098709 chr17 63098638 63098709 MIRc SINE - chr17:63100474-63100673 chr17 63100474 63100673 L2c LINE - chr17:63101403-63101655 chr17 63101403 63101655 AluSq SINE - chr17:63101758-63101791 chr17 63101758 63101791 (GGTGG)n Simple_repeat + chr17:63102517-63102564 chr17 63102517 63102564 (GT)n Simple_repeat + chr17:63104307-63104470 chr17 63104307 63104470 MIRc SINE - chr17:63105405-63105473 chr17 63105405 63105473 MSTD LTR - chr17:63105730-63105844 chr17 63105730 63105844 MSTB2 LTR - chr17:63105802-63105854 chr17 63105802 63105854 MLT2B5 LTR - chr17:63106347-63106416 chr17 63106347 63106416 MLT1I LTR + chr17:63106600-63106727 chr17 63106600 63106727 MIR SINE + chr17:63108218-63108247 chr17 63108218 63108247 (T)n Simple_repeat + chr17:66100408-66100427 chr17 66100408 66100427 (A)n Simple_repeat + chr17:66100755-66100799 chr17 66100755 66100799 (AC)n Simple_repeat + chr17:66103202-66103289 chr17 66103202 66103289 MIRb SINE - chr17:66105704-66105822 chr17 66105704 66105822 AluJo SINE + chr17:66105822-66105851 chr17 66105822 66105851 (TATT)n Simple_repeat + chr17:66109261-66109312 chr17 66109261 66109312 L4_C_Mam LINE + chr17:66109780-66109876 chr17 66109780 66109876 (AT)n Simple_repeat + chr17:66114184-66114294 chr17 66114184 66114294 MamRep605 LTR? + chr17:66117775-66117807 chr17 66117775 66117807 Alu SINE + chr17:66119253-66119393 chr17 66119253 66119393 MER2B DNA - chr17:66120647-66120763 chr17 66120647 66120763 AluJb SINE - chr17:66122027-66122069 chr17 66122027 66122069 A-rich Low_complexity + chr17:66122122-66122426 chr17 66122122 66122426 AluJb SINE - chr17:66125455-66125531 chr17 66125455 66125531 MIRc SINE + chr17:66126935-66127893 chr17 66126935 66127893 L1MC4 LINE + chr17:66127263-66127586 chr17 66127263 66127586 AluJb SINE - chr17:66127432-66127459 chr17 66127432 66127459 (T)n Simple_repeat + chr17:66205717-66205745 chr17 66205717 66205745 (TG)n Simple_repeat + chr17:66205745-66205773 chr17 66205745 66205773 (TA)n Simple_repeat + chr17:66208115-66208167 chr17 66208115 66208167 (ATCTAT)n Simple_repeat + chr17:66215513-66215553 chr17 66215513 66215553 L2c LINE + chr17:66216189-66216236 chr17 66216189 66216236 L1MB7 LINE + chr17:66225232-66225267 chr17 66225232 66225267 (CCTC)n Simple_repeat + chr17:66226198-66226228 chr17 66226198 66226228 (TGTTT)n Simple_repeat + chr17:67540034-67540152 chr17 67540034 67540152 MER5B DNA - chr17:67540909-67541024 chr17 67540909 67541024 Tigger22N1 DNA - chr17:67541131-67541288 chr17 67541131 67541288 MARNA DNA + chr17:67541354-67541419 chr17 67541354 67541419 MARNA DNA + chr17:67541689-67541819 chr17 67541689 67541819 MER119 DNA - chr17:67541879-67542179 chr17 67541879 67542179 AluSp SINE + chr17:67543233-67543329 chr17 67543233 67543329 Charlie4z DNA - chr17:67543426-67543646 chr17 67543426 67543646 MER58A DNA - chr17:71183663-71183713 chr17 71183663 71183713 LSU-rRNA_Hsa rRNA - chr17:74559799-74560505 chr17 74559799 74560505 AluSx SINE - chr17:74559835-74559883 chr17 74559835 74559883 (TTTAT)n Simple_repeat + chr17:74559883-74560140 chr17 74559883 74560140 AluSc SINE - chr17:74560195-74560228 chr17 74560195 74560228 (TTG)n Simple_repeat + chr17:74560519-74560598 chr17 74560519 74560598 FLAM_A SINE - chr17:74560652-74560755 chr17 74560652 74560755 THE1A LTR + chr17:75962202-75962239 chr17 75962202 75962239 MIRb SINE + chr17:75962207-75962268 chr17 75962207 75962268 L2a LINE + chr17:75967674-75967746 chr17 75967674 75967746 L1M5 LINE + chr17:75970117-75970174 chr17 75970117 75970174 GA-rich Low_complexity + chr17:75973604-75973639 chr17 75973604 75973639 MIR SINE - chr17:75980906-75980928 chr17 75980906 75980928 (AC)n Simple_repeat + chr17:75991802-75991820 chr17 75991802 75991820 (AC)n Simple_repeat + chr17:78440926-78440947 chr17 78440926 78440947 (T)n Simple_repeat + chr1:78026389-78026441 chr1 78026389 78026441 L3b LINE - chr1:78026972-78027075 chr1 78026972 78027075 MIR SINE + chr1:78028099-78028217 chr1 78028099 78028217 MER112 DNA - chr1:78028539-78028771 chr1 78028539 78028771 MIR SINE + chr17:8076304-8076366 chr17 8076304 8076366 MER63D DNA - chr17:8076368-8076425 chr17 8076368 8076425 FRAM SINE + chr17:8090183-8090265 chr17 8090183 8090265 tRNA-Ser-AGY tRNA + chr17:8107436-8107460 chr17 8107436 8107460 (T)n Simple_repeat + chr17:8107854-8107894 chr17 8107854 8107894 G-rich Low_complexity + chr1:78411994-78412022 chr1 78411994 78412022 A-rich Low_complexity + chr18:1144980-1145031 chr18 1144980 1145031 (TATT)n Simple_repeat + chr18:11622351-11622370 chr18 11622351 11622370 (CT)n Simple_repeat + chr18:11634087-11634118 chr18 11634087 11634118 (TCCA)n Simple_repeat + chr18:11638429-11638441 chr18 11638429 11638441 (TA)n Simple_repeat + chr18:11641099-11641328 chr18 11641099 11641328 MIRb SINE - chr18:14075906-14075938 chr18 14075906 14075938 (ACACACC)n Simple_repeat + chr18:14084216-14084255 chr18 14084216 14084255 (CTCTTCT)n Simple_repeat + chr18:19211089-19211306 chr18 19211089 19211306 AluSz6 SINE - chr18:19211714-19211826 chr18 19211714 19211826 LTR33 LTR - chr18:19211924-19212084 chr18 19211924 19212084 AluJb SINE + chr18:19212141-19212433 chr18 19212141 19212433 AluSx1 SINE + chr18:19214809-19214938 chr18 19214809 19214938 MIR3 SINE - chr18:19215203-19215240 chr18 19215203 19215240 (CTCC)n Simple_repeat + chr18:25529785-25529816 chr18 25529785 25529816 (ATTTAT)n Simple_repeat + chr1:83065385-83065396 chr1 83065385 83065396 (TTTC)n Simple_repeat + chr18:32073176-32073215 chr18 32073176 32073215 (TG)n Simple_repeat + chr1:83212668-83212714 chr1 83212668 83212714 (ATTAA)n Simple_repeat + chr1:83216206-83216268 chr1 83216206 83216268 UCON105 DNA + chr1:83221975-83222000 chr1 83221975 83222000 (CAA)n Simple_repeat + chr1:83224621-83224685 chr1 83224621 83224685 L1MEi LINE - chr1:83228683-83228722 chr1 83228683 83228722 A-rich Low_complexity + chr1:83228817-83228848 chr1 83228817 83228848 (ATAC)n Simple_repeat + chr1:83239247-83239300 chr1 83239247 83239300 Tigger5b DNA - chr1:83239723-83239772 chr1 83239723 83239772 GA-rich Low_complexity + chr1:83240773-83240816 chr1 83240773 83240816 (CAGATGA)n Simple_repeat + chr1:83240857-83240913 chr1 83240857 83240913 MIRb SINE + chr1:83240948-83241019 chr1 83240948 83241019 Kanga11a DNA + chr1:83250256-83250309 chr1 83250256 83250309 L2a LINE - chr1:83251432-83251464 chr1 83251432 83251464 (T)n Simple_repeat + chr1:83254152-83254186 chr1 83254152 83254186 (AC)n Simple_repeat + chr1:83254294-83254375 chr1 83254294 83254375 L2c LINE + chr18:3261344-3261381 chr18 3261344 3261381 (TG)n Simple_repeat + chr1:83264049-83264086 chr1 83264049 83264086 L2a LINE + chr1:83266673-83266707 chr1 83266673 83266707 (TG)n Simple_repeat + chr1:83271245-83271280 chr1 83271245 83271280 (T)n Simple_repeat + chr1:83275176-83275223 chr1 83275176 83275223 A-rich Low_complexity + chr1:83278264-83278309 chr1 83278264 83278309 (ATGTTTC)n Simple_repeat + chr1:83278778-83278817 chr1 83278778 83278817 A-rich Low_complexity + chr1:83282168-83282199 chr1 83282168 83282199 (AGAT)n Simple_repeat + chr1:83282454-83282488 chr1 83282454 83282488 (AAAAC)n Simple_repeat + chr1:83285052-83285087 chr1 83285052 83285087 (CTTTA)n Simple_repeat + chr1:83285722-83285754 chr1 83285722 83285754 (AC)n Simple_repeat + chr1:83285754-83285786 chr1 83285754 83285786 (AAT)n Simple_repeat + chr18:32870684-32870719 chr18 32870684 32870719 MamRTE1 LINE + chr18:32871497-32872530 chr18 32871497 32872530 MIRb SINE + chr18:32871643-32872127 chr18 32871643 32872127 MLT1H2 LTR - chr18:32872136-32872449 chr18 32872136 32872449 AluJr SINE + chr18:32873292-32873829 chr18 32873292 32873829 LTR33 LTR - chr18:32873578-32873675 chr18 32873578 32873675 MER81 DNA + chr18:32877084-32877432 chr18 32877084 32877432 MLT1B LTR - chr18:32877996-32878282 chr18 32877996 32878282 AluJr SINE - chr18:32879431-32879722 chr18 32879431 32879722 AluJb SINE - chr18:32880007-32880458 chr18 32880007 32880458 LTR47A2 LTR - chr18:32880203-32880228 chr18 32880203 32880228 (T)n Simple_repeat + chr18:32881249-32881418 chr18 32881249 32881418 MER105 DNA + chr18:32881902-32882608 chr18 32881902 32882608 LTR40b LTR + chr18:32882000-32882303 chr18 32882000 32882303 AluSc8 SINE + chr18:32883791-32883916 chr18 32883791 32883916 FLAM_A SINE + chr18:32884565-32885015 chr18 32884565 32885015 MER4A1 LTR + chr18:32885502-32885535 chr18 32885502 32885535 (TTTTCT)n Simple_repeat + chr18:32887933-32888089 chr18 32887933 32888089 AluJr SINE + chr18:32888182-32888406 chr18 32888182 32888406 AluSx3 SINE + chr1:83289121-83289149 chr1 83289121 83289149 (T)n Simple_repeat + chr1:83289236-83289280 chr1 83289236 83289280 A-rich Low_complexity + chr1:83289638-83289663 chr1 83289638 83289663 (CAGC)n Simple_repeat + chr1:83295801-83295869 chr1 83295801 83295869 (TA)n Simple_repeat + chr1:83296323-83296362 chr1 83296323 83296362 (AT)n Simple_repeat + chr1:83298285-83298405 chr1 83298285 83298405 L2b LINE + chr1:83301402-83301623 chr1 83301402 83301623 MIRb SINE - chr1:83303458-83303588 chr1 83303458 83303588 LFSINE_Vert SINE - chr1:83303746-83303786 chr1 83303746 83303786 (T)n Simple_repeat + chr1:83304844-83304890 chr1 83304844 83304890 (GTGCACA)n Simple_repeat + chr1:83306495-83306525 chr1 83306495 83306525 (AC)n Simple_repeat + chr1:83306525-83306552 chr1 83306525 83306552 (TC)n Simple_repeat + chr1:83306983-83307025 chr1 83306983 83307025 (AC)n Simple_repeat + chr1:83307495-83307547 chr1 83307495 83307547 (ATAG)n Simple_repeat + chr1:83307940-83307968 chr1 83307940 83307968 (A)n Simple_repeat + chr1:83307975-83308126 chr1 83307975 83308126 MIR3 SINE - chr1:83309427-83309629 chr1 83309427 83309629 UCON1 Unknown - chr1:83310148-83310231 chr1 83310148 83310231 UCON49 LINE - chr1:83310541-83310584 chr1 83310541 83310584 (GAT)n Simple_repeat + chr1:83312537-83312592 chr1 83312537 83312592 (AC)n Simple_repeat + chr1:83313432-83313501 chr1 83313432 83313501 (CATA)n Simple_repeat + chr18:33291930-33292093 chr18 33291930 33292093 FRAM SINE + chr18:33467010-33467044 chr18 33467010 33467044 (CA)n Simple_repeat + chr18:33521916-33521959 chr18 33521916 33521959 (CA)n Simple_repeat + chr18:33528371-33528395 chr18 33528371 33528395 (TTGG)n Simple_repeat + chr18:33758335-33758545 chr18 33758335 33758545 L1MC5 LINE + chr18:33758581-33758593 chr18 33758581 33758593 SVA_A Retroposon + chr18:33758593-33758681 chr18 33758593 33758681 FLAM_C SINE - chr18:3462525-3462688 chr18 3462525 3462688 MER5B DNA + chr1:83621825-83621841 chr1 83621825 83621841 (TGTTTT)n Simple_repeat + chr1:83687216-83687252 chr1 83687216 83687252 (TTCCAC)n Simple_repeat + chr1:83697541-83697570 chr1 83697541 83697570 (GAAT)n Simple_repeat + chr18:39048600-39048615 chr18 39048600 39048615 (TTTC)n Simple_repeat + chr18:39058708-39058735 chr18 39058708 39058735 (AAGAA)n Simple_repeat + chr18:39071534-39071571 chr18 39071534 39071571 (TCTTG)n Simple_repeat + chr18:39074702-39074726 chr18 39074702 39074726 (TC)n Simple_repeat + chr18:39081041-39081058 chr18 39081041 39081058 (CA)n Simple_repeat + chr18:39086275-39086305 chr18 39086275 39086305 (TTTTTA)n Simple_repeat + chr18:39094209-39094249 chr18 39094209 39094249 (AT)n Simple_repeat + chr18:39094393-39094425 chr18 39094393 39094425 (CA)n Simple_repeat + chr18:39095931-39095982 chr18 39095931 39095982 (TTAA)n Simple_repeat + chr18:39095991-39096048 chr18 39095991 39096048 L2d2 LINE + chr18:39098395-39098437 chr18 39098395 39098437 A-rich Low_complexity + chr18:39101105-39101136 chr18 39101105 39101136 U2 snRNA - chr18:39129541-39129565 chr18 39129541 39129565 (CA)n Simple_repeat + chr18:39136150-39136179 chr18 39136150 39136179 (AATG)n Simple_repeat + chr18:39200359-39200388 chr18 39200359 39200388 A-rich Low_complexity + chr18:44633443-44633461 chr18 44633443 44633461 (TCA)n Simple_repeat + chr1:84542767-84542840 chr1 84542767 84542840 L2c LINE - chr18:5241742-5241881 chr18 5241742 5241881 MER5A DNA - chr18:5243653-5243957 chr18 5243653 5243957 AluSz6 SINE + chr18:5244237-5244673 chr18 5244237 5244673 MLT2B2 LTR - chr18:5244766-5244971 chr18 5244766 5244971 MER2 DNA - chr18:5245371-5245389 chr18 5245371 5245389 (TG)n Simple_repeat + chr18:5246009-5246278 chr18 5246009 5246278 MLT1H LTR - chr18:53446297-53446328 chr18 53446297 53446328 (CTCCCC)n Simple_repeat + chr1:85715943-85715965 chr1 85715943 85715965 AluJr4 SINE - chr1:85717504-85717582 chr1 85717504 85717582 L2b LINE - chr18:57571679-57571743 chr18 57571679 57571743 L2d2 LINE - chr18:60189222-60189248 chr18 60189222 60189248 (A)n Simple_repeat + chr18:65150811-65150829 chr18 65150811 65150829 (TTCTT)n Simple_repeat + chr18:75285178-75285184 chr18 75285178 75285184 (TTTTC)n Simple_repeat + chr18:76737713-76737770 chr18 76737713 76737770 A-rich Low_complexity + chr18:76737726-76737748 chr18 76737726 76737748 (AGT)n Simple_repeat + chr18:77730971-77731873 chr18 77730971 77731873 L1MB7 LINE - chr18:77731324-77731630 chr18 77731324 77731630 AluJb SINE - chr18:77732204-77732352 chr18 77732204 77732352 MIRc SINE - chr18:77807856-77807958 chr18 77807856 77807958 MLT1I LTR - chr18:77808545-77808587 chr18 77808545 77808587 G-rich Low_complexity + chr19:1021520-1021627 chr19 1021520 1021627 U6 snRNA + chr19:10762508-10762994 chr19 10762508 10762994 LTR61 LTR - chr19:10763021-10763214 chr19 10763021 10763214 AluSz6 SINE - chr19:10763214-10763517 chr19 10763214 10763517 AluSx1 SINE - chr19:10764101-10764244 chr19 10764101 10764244 MIR3 SINE + chr19:11041279-11041377 chr19 11041279 11041377 AluJr4 SINE + chr19:11041379-11041686 chr19 11041379 11041686 AluJb SINE + chr19:11732055-11732150 chr19 11732055 11732150 AluSp SINE + chr19:11738082-11738120 chr19 11738082 11738120 (GAAA)n Simple_repeat + chr19:11738298-11738381 chr19 11738298 11738381 AluJr SINE + chr19:11740591-11740640 chr19 11740591 11740640 (AAG)n Simple_repeat + chr19:11746523-11746551 chr19 11746523 11746551 Alu SINE + chr19:11751325-11751410 chr19 11751325 11751410 (TA)n Simple_repeat + chr19:11751738-11751779 chr19 11751738 11751779 (AT)n Simple_repeat + chr19:11752519-11752563 chr19 11752519 11752563 AluYj4 SINE + chr19:11761291-11761321 chr19 11761291 11761321 (ATTT)n Simple_repeat + chr19:11761321-11761468 chr19 11761321 11761468 FRAM SINE - chr19:11769021-11769155 chr19 11769021 11769155 MamGypLTR3 LTR + chr19:11772272-11772304 chr19 11772272 11772304 (TTA)n Simple_repeat + chr19:11787007-11787028 chr19 11787007 11787028 (T)n Simple_repeat + chr19:11789669-11789796 chr19 11789669 11789796 FLAM_C SINE - chr19:11797426-11797452 chr19 11797426 11797452 (ATG)n Simple_repeat + chr19:11803278-11803304 chr19 11803278 11803304 (T)n Simple_repeat + chr19:11816269-11816384 chr19 11816269 11816384 FLAM_A SINE + chr19:11831981-11832001 chr19 11831981 11832001 (ATC)n Simple_repeat + chr19:11851090-11851136 chr19 11851090 11851136 A-rich Low_complexity + chr19:11851271-11851305 chr19 11851271 11851305 (CA)n Simple_repeat + chr19:11856544-11856643 chr19 11856544 11856643 FLAM_C SINE + chr19:11869208-11869235 chr19 11869208 11869235 (TTTA)n Simple_repeat + chr19:11869691-11869715 chr19 11869691 11869715 (TATAT)n Simple_repeat + chr19:11873689-11873734 chr19 11873689 11873734 (ATAA)n Simple_repeat + chr19:11877061-11877091 chr19 11877061 11877091 (TTTCTTT)n Simple_repeat + chr19:11895582-11895636 chr19 11895582 11895636 L2b LINE + chr19:11918917-11919211 chr19 11918917 11919211 AluSg SINE + chr19:11923399-11923475 chr19 11923399 11923475 MER94 DNA + chr19:11923697-11923972 chr19 11923697 11923972 AluJb SINE + chr19:11946203-11946215 chr19 11946203 11946215 (TTGGCC)n Simple_repeat + chr19:11946849-11947146 chr19 11946849 11947146 AluSz SINE + chr19:11948641-11948895 chr19 11948641 11948895 AluJb SINE + chr19:11948895-11948918 chr19 11948895 11948918 (TA)n Simple_repeat + chr19:11950933-11951237 chr19 11950933 11951237 AluSz6 SINE + chr19:11952223-11952511 chr19 11952223 11952511 AluSz SINE + chr19:11954307-11954369 chr19 11954307 11954369 (TTTTCA)n Simple_repeat + chr19:11955057-11955183 chr19 11955057 11955183 FLAM_C SINE + chr19:11955194-11955502 chr19 11955194 11955502 MLT1A LTR + chr19:11955691-11955713 chr19 11955691 11955713 (CT)n Simple_repeat + chr19:11956200-11956349 chr19 11956200 11956349 AluSz SINE + chr19:11980410-11980459 chr19 11980410 11980459 (TTTAAT)n Simple_repeat + chr19:11981134-11981441 chr19 11981134 11981441 AluSp SINE + chr19:11982034-11982334 chr19 11982034 11982334 AluSz SINE + chr19:11983624-11983921 chr19 11983624 11983921 AluSz6 SINE + chr19:11984305-11984621 chr19 11984305 11984621 AluSz6 SINE + chr19:11984903-11985241 chr19 11984903 11985241 MER21C LTR + chr19:11985608-11985655 chr19 11985608 11985655 (ATTT)n Simple_repeat + chr19:11987497-11987646 chr19 11987497 11987646 FLAM_C SINE + chr19:11987641-11987951 chr19 11987641 11987951 MLT1A LTR + chr19:11988490-11988606 chr19 11988490 11988606 AluJo SINE - chr19:11996044-11996340 chr19 11996044 11996340 AluYk3 SINE + chr19:11997678-11997982 chr19 11997678 11997982 AluSz SINE + chr19:12025736-12026036 chr19 12025736 12026036 AluSz SINE + chr19:12026438-12026735 chr19 12026438 12026735 AluSz6 SINE + chr19:12027148-12027441 chr19 12027148 12027441 AluSz SINE + chr19:12027723-12028073 chr19 12027723 12028073 MER21C LTR + chr19:12028442-12028604 chr19 12028442 12028604 AluSx3 SINE - chr19:12028983-12029034 chr19 12028983 12029034 L1M5 LINE - chr19:12029669-12029708 chr19 12029669 12029708 (TTTTCA)n Simple_repeat + chr19:12030009-12030037 chr19 12030009 12030037 (TTTTCA)n Simple_repeat + chr19:12030267-12030416 chr19 12030267 12030416 FLAM_C SINE + chr19:12030411-12030728 chr19 12030411 12030728 MLT1A LTR + chr19:12030822-12030916 chr19 12030822 12030916 ERV24_Prim-int LTR - chr19:12031258-12031398 chr19 12031258 12031398 FLAM_C SINE - chr19:12031420-12031571 chr19 12031420 12031571 AluSq2 SINE + chr19:12034347-12034393 chr19 12034347 12034393 (CTCCACT)n Simple_repeat + chr19:12034965-12035276 chr19 12034965 12035276 AluY SINE + chr19:12092666-12092789 chr19 12092666 12092789 MER21A LTR - chr19:12093398-12093514 chr19 12093398 12093514 AluJr4 SINE - chr19:12094914-12095146 chr19 12094914 12095146 AluJr SINE + chr19:12095146-12095257 chr19 12095146 12095257 LTR1 LTR - chr19:12097794-12098081 chr19 12097794 12098081 AluSz SINE + chr19:12100474-12100711 chr19 12100474 12100711 HERVK13-int LTR + chr19:12100775-12101032 chr19 12100775 12101032 LTR13 LTR - chr19:12101152-12101403 chr19 12101152 12101403 MER4D LTR - chr19:12101415-12102087 chr19 12101415 12102087 L1PB1 LINE + chr19:12101647-12101949 chr19 12101647 12101949 AluSx SINE + chr19:12102220-12102505 chr19 12102220 12102505 MER49 LTR - chr19:12102528-12103277 chr19 12102528 12103277 MER4C LTR + chr19:12102667-12102965 chr19 12102667 12102965 AluSg SINE + chr19:12103657-12103788 chr19 12103657 12103788 AluSq2 SINE + chr19:12103788-12104443 chr19 12103788 12104443 AluSz SINE + chr19:12103834-12104324 chr19 12103834 12104324 LTR61 LTR - chr19:12104993-12105219 chr19 12104993 12105219 AluJb SINE - chr19:12105233-12105546 chr19 12105233 12105546 AluSz SINE - chr19:12106501-12106556 chr19 12106501 12106556 HSMAR1 DNA + chr19:12106559-12106884 chr19 12106559 12106884 AluY SINE - chr19:12106884-12107165 chr19 12106884 12107165 AluSz SINE - chr19:12107170-12107621 chr19 12107170 12107621 L1M4 LINE + chr19:12107288-12107585 chr19 12107288 12107585 AluSg SINE + chr19:12107629-12107733 chr19 12107629 12107733 5S rRNA + chr19:12108133-12108459 chr19 12108133 12108459 MER31B LTR - chr19:12108648-12108932 chr19 12108648 12108932 AluSz SINE - chr19:12109129-12109453 chr19 12109129 12109453 AluSp SINE - chr19:12109845-12110144 chr19 12109845 12110144 AluY SINE + chr19:12110409-12111216 chr19 12110409 12111216 LTR1A2 LTR + chr19:12111216-12111279 chr19 12111216 12111279 L1M3 LINE - chr19:12111560-12111629 chr19 12111560 12111629 MER68B LTR - chr19:12112120-12112421 chr19 12112120 12112421 AluY SINE - chr19:12112717-12112992 chr19 12112717 12112992 AluSc8 SINE + chr19:12113349-12113528 chr19 12113349 12113528 AluSz SINE - chr19:12113569-12113842 chr19 12113569 12113842 AluJr SINE + chr19:12113900-12114195 chr19 12113900 12114195 AluSx4 SINE + chr19:12114206-12114472 chr19 12114206 12114472 AluSz SINE + chr19:12114975-12115287 chr19 12114975 12115287 AluSq SINE + chr19:12115287-12115580 chr19 12115287 12115580 HERV35I-int LTR + chr19:12121983-12122829 chr19 12121983 12122829 LTR8 LTR + chr19:12122894-12123175 chr19 12122894 12123175 AluJr SINE + chr19:12124863-12124993 chr19 12124863 12124993 LTR24C LTR + chr19:12147036-12147321 chr19 12147036 12147321 AluJo SINE + chr19:12149057-12149349 chr19 12149057 12149349 AluSx SINE + chr19:12149349-12149656 chr19 12149349 12149656 AluSx SINE + chr19:12149884-12150188 chr19 12149884 12150188 AluSz SINE - chr19:12150221-12150354 chr19 12150221 12150354 FLAM_A SINE - chr19:12150385-12150694 chr19 12150385 12150694 AluSx1 SINE + chr19:12151308-12151607 chr19 12151308 12151607 AluSc SINE + chr19:12151788-12153490 chr19 12151788 12153490 LTR39 LTR + chr19:12151913-12152792 chr19 12151913 12152792 AluJr SINE + chr19:12152057-12152305 chr19 12152057 12152305 AluSx4 SINE + chr19:12152322-12152633 chr19 12152322 12152633 AluY SINE + chr19:12153223-12153355 chr19 12153223 12153355 AluYk2 SINE + chr19:12153664-12153951 chr19 12153664 12153951 AluJr SINE + chr19:12153951-12153980 chr19 12153951 12153980 (AC)n Simple_repeat + chr19:12153982-12154101 chr19 12153982 12154101 (ATAT)n Simple_repeat + chr19:12154107-12154133 chr19 12154107 12154133 (TTAT)n Simple_repeat + chr19:12154133-12154417 chr19 12154133 12154417 AluSp SINE - chr19:12154437-12154537 chr19 12154437 12154537 AluJo SINE - chr19:12168269-12168395 chr19 12168269 12168395 AluSz SINE + chr19:12168525-12168638 chr19 12168525 12168638 LTR24C LTR - chr19:12168751-12168829 chr19 12168751 12168829 PABL_B LTR - chr19:12169826-12169959 chr19 12169826 12169959 FLAM_C SINE - chr19:12171393-12171553 chr19 12171393 12171553 LTR29 LTR - chr19:12172020-12172132 chr19 12172020 12172132 MER41B LTR - chr19:12172138-12172418 chr19 12172138 12172418 AluSx SINE + chr19:12174527-12174688 chr19 12174527 12174688 AluSg4 SINE - chr19:12193358-12193477 chr19 12193358 12193477 MER90a LTR - chr19:12193524-12193826 chr19 12193524 12193826 AluSp SINE + chr19:12193874-12193905 chr19 12193874 12193905 (T)n Simple_repeat + chr19:12195597-12195845 chr19 12195597 12195845 AluSg SINE + chr19:12196421-12196626 chr19 12196421 12196626 FRAM SINE + chr19:12197545-12197579 chr19 12197545 12197579 (TTAT)n Simple_repeat + chr19:12199063-12199157 chr19 12199063 12199157 HY3 scRNA - chr19:12199470-12199607 chr19 12199470 12199607 FLAM_C SINE + chr19:12202557-12202840 chr19 12202557 12202840 AluSq2 SINE + chr19:12202846-12202867 chr19 12202846 12202867 (AATC)n Simple_repeat + chr19:12308299-12308324 chr19 12308299 12308324 (T)n Simple_repeat + chr19:12310399-12310533 chr19 12310399 12310533 AluJr SINE + chr19:12312688-12312719 chr19 12312688 12312719 (TTA)n Simple_repeat + chr19:12315377-12315464 chr19 12315377 12315464 AluSx4 SINE + chr19:12315641-12315692 chr19 12315641 12315692 (TTCT)n Simple_repeat + chr19:12316691-12316741 chr19 12316691 12316741 AluJr SINE - chr19:12317457-12317517 chr19 12317457 12317517 MER68 LTR - chr19:12317586-12317624 chr19 12317586 12317624 (TT)n Simple_repeat + chr19:12317636-12317725 chr19 12317636 12317725 FLAM_C SINE - chr19:12321231-12321350 chr19 12321231 12321350 L1M4 LINE - chr19:12332151-12332249 chr19 12332151 12332249 L1MC LINE + chr19:12332250-12332340 chr19 12332250 12332340 AluSg SINE + chr19:12332496-12332666 chr19 12332496 12332666 L1M5 LINE + chr19:12333021-12333150 chr19 12333021 12333150 AluJr SINE + chr19:12334192-12334392 chr19 12334192 12334392 L1PA16 LINE + chr19:12355118-12355261 chr19 12355118 12355261 LTR44 LTR + chr19:12355371-12355850 chr19 12355371 12355850 MER90a LTR + chr19:12458743-12458765 chr19 12458743 12458765 (GAT)n Simple_repeat + chr19:12743311-12743602 chr19 12743311 12743602 AluSx1 SINE + chr19:12744164-12744253 chr19 12744164 12744253 LTR33C LTR + chr19:12924485-12924519 chr19 12924485 12924519 (ATTTT)n Simple_repeat + chr19:13266203-13266232 chr19 13266203 13266232 MIRb SINE + chr1:91361359-91361385 chr1 91361359 91361385 (TCA)n Simple_repeat + chr1:91380311-91380333 chr1 91380311 91380333 (TTTG)n Simple_repeat + chr19:1597039-1597105 chr19 1597039 1597105 Alu SINE - chr19:1865502-1865543 chr19 1865502 1865543 L2d2 LINE - chr19:19891298-19891329 chr19 19891298 19891329 (TATG)n Simple_repeat + chr19:19963131-19963216 chr19 19963131 19963216 MER5A DNA - chr19:19968976-19969284 chr19 19968976 19969284 AluSx4 SINE + chr19:19969409-19969678 chr19 19969409 19969678 AluSx SINE + chr19:19970310-19970667 chr19 19970310 19970667 L3 LINE + chr19:19970347-19970653 chr19 19970347 19970653 AluSc SINE + chr19:19970802-19971518 chr19 19970802 19971518 MER57E3 LTR + chr19:19971177-19971463 chr19 19971177 19971463 AluSz SINE - chr19:20005639-20005847 chr19 20005639 20005847 AluSp SINE + chr19:20005853-20006018 chr19 20005853 20006018 AluSz SINE - chr19:20006044-20006207 chr19 20006044 20006207 L1MA3 LINE - chr19:20006219-20006367 chr19 20006219 20006367 AluSx SINE + chr19:20006368-20008623 chr19 20006368 20008623 HERVE_a-int LTR + chr19:20046560-20046861 chr19 20046560 20046861 AluSx1 SINE + chr19:20046895-20047164 chr19 20046895 20047164 AluSc SINE + chr19:20047639-20047716 chr19 20047639 20047716 L2 LINE - chr19:20049602-20049798 chr19 20049602 20049798 L1MC4 LINE + chr19:20051235-20051335 chr19 20051235 20051335 MIRb SINE - chr19:20063354-20063400 chr19 20063354 20063400 LTR85a LTR + chr19:20065313-20065354 chr19 20065313 20065354 (CA)n Simple_repeat + chr19:20065358-20065384 chr19 20065358 20065384 (AACA)n Simple_repeat + chr19:20066012-20066081 chr19 20066012 20066081 AluSz SINE - chr19:20066090-20066140 chr19 20066090 20066140 MER57E3 LTR + chr19:20068441-20068509 chr19 20068441 20068509 LTR8 LTR - chr19:20068910-20068972 chr19 20068910 20068972 LTR66 LTR + chr19:20083177-20083229 chr19 20083177 20083229 (T)n Simple_repeat + chr19:20083517-20083600 chr19 20083517 20083600 L2a LINE + chr19:20085410-20085457 chr19 20085410 20085457 Helitron1Na_Mam RC + chr19:20085479-20085667 chr19 20085479 20085667 Helitron1Na_Mam RC + chr19:20085697-20085781 chr19 20085697 20085781 (AT)n Simple_repeat + chr19:20090318-20090354 chr19 20090318 20090354 A-rich Low_complexity + chr19:20090606-20090637 chr19 20090606 20090637 (AC)n Simple_repeat + chr19:20092990-20093118 chr19 20092990 20093118 L1PREC2 LINE + chr19:20094261-20094458 chr19 20094261 20094458 MLT1J LTR + chr19:20106482-20106567 chr19 20106482 20106567 LTR66 LTR - chr19:20107783-20107810 chr19 20107783 20107810 (CA)n Simple_repeat + chr19:20150721-20150785 chr19 20150721 20150785 MER33 DNA - chr19:20151636-20151748 chr19 20151636 20151748 MER5B DNA + chr19:20153204-20153303 chr19 20153204 20153303 L1ME3A LINE - chr19:20153412-20153544 chr19 20153412 20153544 L1MC5 LINE - chr19:20153559-20153664 chr19 20153559 20153664 L1ME2 LINE - chr19:20153672-20153775 chr19 20153672 20153775 MER5A1 DNA - chr19:20154516-20154590 chr19 20154516 20154590 (TATTAA)n Simple_repeat + chr19:20157213-20157258 chr19 20157213 20157258 (TTGTATA)n Simple_repeat + chr19:20158007-20158048 chr19 20158007 20158048 (AAAAT)n Simple_repeat + chr19:20158734-20158755 chr19 20158734 20158755 A-rich Low_complexity + chr19:20159184-20159199 chr19 20159184 20159199 A-rich Low_complexity + chr19:20159711-20159742 chr19 20159711 20159742 (AAAT)n Simple_repeat + chr19:20164843-20164890 chr19 20164843 20164890 A-rich Low_complexity + chr19:20166456-20166476 chr19 20166456 20166476 (AT)n Simple_repeat + chr19:20167408-20167445 chr19 20167408 20167445 (ACAC)n Simple_repeat + chr19:20168673-20168717 chr19 20168673 20168717 (TTAA)n Simple_repeat + chr19:20168751-20168906 chr19 20168751 20168906 AluSx4 SINE - chr19:20171759-20171811 chr19 20171759 20171811 L1PA12 LINE + chr19:20172152-20172196 chr19 20172152 20172196 (AT)n Simple_repeat + chr19:20172938-20173013 chr19 20172938 20173013 Alu SINE + chr19:20176179-20176275 chr19 20176179 20176275 AluSz SINE + chr19:20176515-20176583 chr19 20176515 20176583 LTR8 LTR - chr19:20186163-20186231 chr19 20186163 20186231 AluSc SINE + chr19:20187934-20188002 chr19 20187934 20188002 LTR8 LTR + chr19:20232506-20232705 chr19 20232506 20232705 L1MA2 LINE - chr19:20232756-20233001 chr19 20232756 20233001 AluSx1 SINE + chr19:20233700-20233997 chr19 20233700 20233997 MLT1E1A LTR + chr19:20234021-20234225 chr19 20234021 20234225 FordPrefect DNA - chr19:20236652-20237520 chr19 20236652 20237520 L1MA7 LINE - chr19:20236685-20236976 chr19 20236685 20236976 AluSg SINE - chr19:20237026-20237314 chr19 20237026 20237314 AluSz SINE + chr19:20237528-20237756 chr19 20237528 20237756 AluSz SINE - chr19:20237759-20237796 chr19 20237759 20237796 (TTTC)n Simple_repeat + chr19:20238656-20238956 chr19 20238656 20238956 AluSx SINE + chr19:20238956-20238985 chr19 20238956 20238985 (AT)n Simple_repeat + chr19:20239510-20239547 chr19 20239510 20239547 A-rich Low_complexity + chr19:20239665-20239774 chr19 20239665 20239774 FLAM_A SINE + chr19:20241024-20241315 chr19 20241024 20241315 AluSc8 SINE - chr19:20242233-20242260 chr19 20242233 20242260 (AAAC)n Simple_repeat + chr19:20242371-20242674 chr19 20242371 20242674 AluSg SINE - chr19:20243826-20244148 chr19 20243826 20244148 AluSp SINE - chr19:20244372-20244560 chr19 20244372 20244560 L1MC4 LINE + chr19:20244712-20245030 chr19 20244712 20245030 AluSq2 SINE - chr19:20245950-20246015 chr19 20245950 20246015 MER5B DNA - chr19:20250381-20250638 chr19 20250381 20250638 AluSx SINE + chr19:20251048-20251346 chr19 20251048 20251346 AluY SINE - chr19:20252209-20252491 chr19 20252209 20252491 AluSc8 SINE + chr19:20252491-20252539 chr19 20252491 20252539 (AC)n Simple_repeat + chr19:20252894-20253201 chr19 20252894 20253201 AluJb SINE + chr19:20253332-20253650 chr19 20253332 20253650 AluSp SINE + chr19:20255217-20255502 chr19 20255217 20255502 AluY SINE + chr19:20255502-20255528 chr19 20255502 20255528 (AAAT)n Simple_repeat + chr19:20255653-20255963 chr19 20255653 20255963 AluY SINE - chr19:20256396-20256695 chr19 20256396 20256695 AluSz SINE - chr19:20257369-20257651 chr19 20257369 20257651 AluSp SINE + chr19:20257874-20257894 chr19 20257874 20257894 (CAA)n Simple_repeat + chr19:20263665-20263991 chr19 20263665 20263991 MER57A-int LTR - chr19:20264020-20264243 chr19 20264020 20264243 AluSz SINE + chr19:20264243-20264311 chr19 20264243 20264311 LTR8 LTR - chr19:20265129-20265446 chr19 20265129 20265446 AluYm1 SINE + chr19:20272250-20272718 chr19 20272250 20272718 LTR2B LTR + chr19:20276880-20277128 chr19 20276880 20277128 LTR66 LTR - chr19:20277128-20277232 chr19 20277128 20277232 LTR8 LTR + chr19:20277232-20277452 chr19 20277232 20277452 AluSx3 SINE - chr19:20277479-20277792 chr19 20277479 20277792 MER57A-int LTR + chr19:20311557-20311757 chr19 20311557 20311757 L1MA3 LINE - chr19:20311809-20312085 chr19 20311809 20312085 AluSx SINE + chr19:20313616-20313890 chr19 20313616 20313890 AluSx3 SINE + chr19:20313925-20314044 chr19 20313925 20314044 FLAM_A SINE + chr19:20315099-20315402 chr19 20315099 20315402 AluSx1 SINE + chr19:20317771-20317818 chr19 20317771 20317818 (AC)n Simple_repeat + chr19:20318153-20318444 chr19 20318153 20318444 AluSp SINE - chr19:20318455-20318511 chr19 20318455 20318511 MER5A DNA - chr19:20318669-20318887 chr19 20318669 20318887 L1MC4 LINE + chr19:20319883-20320033 chr19 20319883 20320033 MER5B DNA + chr19:20320411-20320516 chr19 20320411 20320516 MIRb SINE - chr19:20320801-20321110 chr19 20320801 20321110 AluSp SINE + chr19:20321576-20321872 chr19 20321576 20321872 AluSg4 SINE + chr19:20323618-20323922 chr19 20323618 20323922 AluJb SINE + chr19:20324051-20324363 chr19 20324051 20324363 AluSp SINE + chr19:20326675-20327047 chr19 20326675 20327047 MER21C LTR - chr19:20327059-20327877 chr19 20327059 20327877 MER92B LTR + chr19:20327276-20327570 chr19 20327276 20327570 AluSx1 SINE - chr19:20328197-20328300 chr19 20328197 20328300 MIRb SINE + chr19:20328432-20328582 chr19 20328432 20328582 MER5B DNA + chr19:20328590-20328728 chr19 20328590 20328728 MER5A1 DNA - chr19:20329171-20329477 chr19 20329171 20329477 AluY SINE + chr19:20329941-20330234 chr19 20329941 20330234 AluSg4 SINE + chr19:20331249-20332477 chr19 20331249 20332477 LTR70 LTR - chr19:20333727-20334026 chr19 20333727 20334026 AluSx SINE + chr19:20334373-20334667 chr19 20334373 20334667 AluSp SINE + chr19:20334749-20334776 chr19 20334749 20334776 (A)n Simple_repeat + chr19:20334962-20335254 chr19 20334962 20335254 AluSp SINE + chr19:20335307-20342452 chr19 20335307 20342452 L1PREC2 LINE + chr19:20335936-20336246 chr19 20335936 20336246 AluSx4 SINE + chr19:20336588-20336897 chr19 20336588 20336897 AluJb SINE + chr19:20337003-20339290 chr19 20337003 20339290 L1P2 LINE - chr19:20337948-20338234 chr19 20337948 20338234 AluY SINE - chr19:20339288-20341821 chr19 20339288 20341821 L1PA5 LINE + chr19:20341865-20342171 chr19 20341865 20342171 AluSp SINE + chr19:20342978-20343320 chr19 20342978 20343320 MER21B LTR - chr19:20343356-20344441 chr19 20343356 20344441 MER92B LTR + chr19:20343561-20343856 chr19 20343561 20343856 AluSx1 SINE - chr19:20343874-20344135 chr19 20343874 20344135 AluSg4 SINE - chr19:20344880-20345172 chr19 20344880 20345172 AluSz SINE - chr19:20345775-20346058 chr19 20345775 20346058 AluSz6 SINE + chr19:20347096-20347397 chr19 20347096 20347397 AluSc SINE + chr19:20347548-20348740 chr19 20347548 20348740 MER57E3 LTR + chr19:20348011-20348314 chr19 20348011 20348314 AluYe5 SINE + chr19:20348315-20348579 chr19 20348315 20348579 AluSz SINE - chr19:20348598-20348692 chr19 20348598 20348692 AluYm1 SINE - chr19:20349481-20349628 chr19 20349481 20349628 MER57A-int LTR - chr19:20349629-20349745 chr19 20349629 20349745 AluSz SINE - chr19:20349751-20349995 chr19 20349751 20349995 LTR66 LTR + chr19:20349991-20350135 chr19 20349991 20350135 LTR66 LTR + chr19:20350155-20350221 chr19 20350155 20350221 HERVL66-int LTR + chr19:20351770-20351837 chr19 20351770 20351837 LTR8 LTR + chr19:20351837-20352051 chr19 20351837 20352051 AluSx3 SINE - chr19:20352249-20352555 chr19 20352249 20352555 AluSc8 SINE - chr19:20352795-20352982 chr19 20352795 20352982 AluSp SINE + chr19:20353046-20353350 chr19 20353046 20353350 AluSz SINE + chr19:20353357-20353668 chr19 20353357 20353668 AluSz SINE + chr19:20353956-20354254 chr19 20353956 20354254 AluSc8 SINE - chr19:20359298-20359546 chr19 20359298 20359546 LTR5_Hs LTR - chr19:20360346-20360538 chr19 20360346 20360538 (TTCT)n Simple_repeat + chr19:20360538-20360845 chr19 20360538 20360845 AluSp SINE - chr19:20361233-20361259 chr19 20361233 20361259 (TTAT)n Simple_repeat + chr19:20362826-20363109 chr19 20362826 20363109 AluSp SINE + chr19:20364079-20364133 chr19 20364079 20364133 (AT)n Simple_repeat + chr19:20366001-20366258 chr19 20366001 20366258 AluJr SINE + chr19:20367401-20367429 chr19 20367401 20367429 (TG)n Simple_repeat + chr19:20367998-20368029 chr19 20367998 20368029 (TTAT)n Simple_repeat + chr19:20374534-20374791 chr19 20374534 20374791 AluJb SINE + chr19:20375099-20375410 chr19 20375099 20375410 AluSx3 SINE + chr19:20376413-20376475 chr19 20376413 20376475 AluJr SINE + chr19:203803-203905 chr19 203803 203905 MER8 DNA - chr19:20383716-20383948 chr19 20383716 20383948 AluSg SINE + chr19:20384560-20384620 chr19 20384560 20384620 Alu SINE + chr19:20385498-20385527 chr19 20385498 20385527 A-rich Low_complexity + chr19:20387197-20387399 chr19 20387197 20387399 L1P3b LINE + chr19:20401355-20401469 chr19 20401355 20401469 MER67C LTR + chr19:20401835-20401895 chr19 20401835 20401895 Alu SINE - chr19:20414707-20415010 chr19 20414707 20415010 AluSq2 SINE - chr19:20416335-20416633 chr19 20416335 20416633 AluSp SINE + chr19:20416910-20417104 chr19 20416910 20417104 L1MA2 LINE - chr19:20417133-20417152 chr19 20417133 20417152 (AAAAT)n Simple_repeat + chr19:20417152-20417437 chr19 20417152 20417437 AluSz SINE + chr19:20417437-20417447 chr19 20417437 20417447 (AAAAT)n Simple_repeat + chr19:20418127-20418417 chr19 20418127 20418417 AluSg SINE - chr19:20418768-20419124 chr19 20418768 20419124 FordPrefect DNA - chr19:20419572-20419852 chr19 20419572 20419852 AluSx1 SINE - chr19:20421406-20421660 chr19 20421406 20421660 AluSg SINE + chr19:20421873-20422099 chr19 20421873 20422099 AluSx SINE - chr19:20422100-20422147 chr19 20422100 20422147 (CTTT)n Simple_repeat + chr19:20423979-20424272 chr19 20423979 20424272 AluY SINE + chr19:20425287-20425409 chr19 20425287 20425409 (ATAT)n Simple_repeat + chr19:20428316-20428350 chr19 20428316 20428350 (TA)n Simple_repeat + chr19:20433160-20433232 chr19 20433160 20433232 AluSx SINE - chr19:20433564-20433849 chr19 20433564 20433849 AluSx1 SINE - chr19:20436909-20437214 chr19 20436909 20437214 AluSg4 SINE - chr19:20437870-20437974 chr19 20437870 20437974 MIRb SINE + chr19:20438209-20438279 chr19 20438209 20438279 MER5A DNA + chr19:20446746-20446793 chr19 20446746 20446793 GA-rich Low_complexity + chr19:20446794-20447021 chr19 20446794 20447021 AluSg SINE + chr19:20487632-20487830 chr19 20487632 20487830 MER92B LTR - chr19:20487860-20488207 chr19 20487860 20488207 MER21C LTR + chr19:20492589-20492878 chr19 20492589 20492878 AluSx4 SINE - chr19:20496517-20496814 chr19 20496517 20496814 AluSg4 SINE - chr19:20497558-20497662 chr19 20497558 20497662 MIRb SINE + chr19:20498040-20498135 chr19 20498040 20498135 MER5B DNA - chr19:20499732-20499793 chr19 20499732 20499793 MER5A DNA + chr19:20499798-20500107 chr19 20499798 20500107 AluSp SINE + chr19:20500703-20501005 chr19 20500703 20501005 AluSg7 SINE + chr19:20501701-20502004 chr19 20501701 20502004 AluSp SINE - chr19:20504316-20504425 chr19 20504316 20504425 FLAM_A SINE - chr19:20504452-20504748 chr19 20504452 20504748 AluSx3 SINE - chr19:20505970-20506249 chr19 20505970 20506249 AluSx SINE - chr19:20506282-20506297 chr19 20506282 20506297 A-rich Low_complexity + chr19:20506297-20506488 chr19 20506297 20506488 L1MA2 LINE + chr19:20506488-20506527 chr19 20506488 20506527 A-rich Low_complexity + chr19:20507418-20507687 chr19 20507418 20507687 AluSq2 SINE + chr19:20575129-20575408 chr19 20575129 20575408 AluSx SINE - chr19:20575441-20575456 chr19 20575441 20575456 A-rich Low_complexity + chr19:20575456-20575647 chr19 20575456 20575647 L1MA2 LINE + chr19:20575647-20575686 chr19 20575647 20575686 A-rich Low_complexity + chr19:20608540-20608645 chr19 20608540 20608645 LTR8 LTR - chr19:20625343-20625411 chr19 20625343 20625411 LTR8 LTR + chr19:20625655-20625751 chr19 20625655 20625751 AluSq2 SINE - chr19:20627121-20627197 chr19 20627121 20627197 Alu SINE - chr19:20631563-20631635 chr19 20631563 20631635 MER5A DNA + chr19:20636838-20636957 chr19 20636838 20636957 FLAM_A SINE - chr19:20642895-20642965 chr19 20642895 20642965 Alu SINE - chr19:20656344-20656393 chr19 20656344 20656393 MER57E3 LTR - chr19:20671901-20671922 chr19 20671901 20671922 (A)n Simple_repeat + chr19:20672299-20672324 chr19 20672299 20672324 (TG)n Simple_repeat + chr19:20680181-20680256 chr19 20680181 20680256 L2 LINE + chr19:20682067-20682104 chr19 20682067 20682104 A-rich Low_complexity + chr19:20707526-20707580 chr19 20707526 20707580 L1MB2 LINE - chr19:20710896-20710988 chr19 20710896 20710988 (TA)n Simple_repeat + chr19:20716207-20716320 chr19 20716207 20716320 (AT)n Simple_repeat + chr19:20717259-20717297 chr19 20717259 20717297 (TATC)n Simple_repeat + chr19:20717838-20717884 chr19 20717838 20717884 GA-rich Low_complexity + chr19:20749281-20749314 chr19 20749281 20749314 (TAATAAC)n Simple_repeat + chr19:20749412-20749480 chr19 20749412 20749480 LTR8 LTR - chr19:20760503-20760549 chr19 20760503 20760549 (ATTT)n Simple_repeat + chr19:20762057-20762104 chr19 20762057 20762104 Helitron1Na_Mam RC + chr19:20762345-20762439 chr19 20762345 20762439 (AT)n Simple_repeat + chr19:20766622-20766701 chr19 20766622 20766701 (TA)n Simple_repeat + chr19:20770274-20770317 chr19 20770274 20770317 (TA)n Simple_repeat + chr19:20772317-20772417 chr19 20772317 20772417 AluSx3 SINE - chr19:20775578-20775677 chr19 20775578 20775677 MIRb SINE - chr19:20779685-20779799 chr19 20779685 20779799 AluSp SINE - chr19:20779796-20779879 chr19 20779796 20779879 Alu SINE + chr19:20787863-20788033 chr19 20787863 20788033 AluSg4 SINE - chr19:20789038-20789088 chr19 20789038 20789088 (ATGTAT)n Simple_repeat + chr19:20790537-20790613 chr19 20790537 20790613 (ATATAA)n Simple_repeat + chr19:20791957-20791992 chr19 20791957 20791992 A-rich Low_complexity + chr19:20791998-20792046 chr19 20791998 20792046 GA-rich Low_complexity + chr19:20795353-20795401 chr19 20795353 20795401 (TTATAGA)n Simple_repeat + chr19:20801996-20802071 chr19 20801996 20802071 FordPrefect_a DNA + chr1:9208351-9208524 chr1 9208351 9208524 L1MD2 LINE - chr19:20845181-20845242 chr19 20845181 20845242 LTR8 LTR - chr19:20849851-20849875 chr19 20849851 20849875 (T)n Simple_repeat + chr19:20850056-20850092 chr19 20850056 20850092 A-rich Low_complexity + chr19:20850267-20850310 chr19 20850267 20850310 (TATT)n Simple_repeat + chr19:208544-208652 chr19 208544 208652 AluJb SINE - chr19:20859037-20859112 chr19 20859037 20859112 L1MC4 LINE - chr19:20861658-20861679 chr19 20861658 20861679 (TTGT)n Simple_repeat + chr19:20861746-20861823 chr19 20861746 20861823 L2 LINE + chr19:20863416-20863535 chr19 20863416 20863535 FLAM_A SINE - chr19:20869904-20869965 chr19 20869904 20869965 Alu SINE - chr19:20885841-20885924 chr19 20885841 20885924 (ATTTAT)n Simple_repeat + chr19:20887436-20887461 chr19 20887436 20887461 (AT)n Simple_repeat + chr19:20893729-20893806 chr19 20893729 20893806 HERVK3-int LTR - chr19:20893920-20893983 chr19 20893920 20893983 MER41C LTR - chr19:20898714-20898740 chr19 20898714 20898740 (TTGT)n Simple_repeat + chr1:9209012-9209259 chr1 9209012 9209259 AluSx1 SINE + chr19:20916195-20916232 chr19 20916195 20916232 (TTATTAA)n Simple_repeat + chr19:20921048-20921142 chr19 20921048 20921142 MIRb SINE + chr19:20921472-20921510 chr19 20921472 20921510 (AAAC)n Simple_repeat + chr19:20924269-20924307 chr19 20924269 20924307 Alu SINE - chr19:20924308-20924392 chr19 20924308 20924392 AluSx4 SINE + chr19:20924392-20924419 chr19 20924392 20924419 (AAAC)n Simple_repeat + chr19:20926356-20926395 chr19 20926356 20926395 (AT)n Simple_repeat + chr19:20940997-20941063 chr19 20940997 20941063 (AT)n Simple_repeat + chr19:20944610-20944699 chr19 20944610 20944699 (TA)n Simple_repeat + chr19:20944940-20944987 chr19 20944940 20944987 Helitron1Na_Mam RC - chr19:20946493-20946542 chr19 20946493 20946542 (AATA)n Simple_repeat + chr19:20958237-20958305 chr19 20958237 20958305 LTR8 LTR + chr19:20998129-20998365 chr19 20998129 20998365 AluSp SINE + chr19:20998673-20998868 chr19 20998673 20998868 L1MA2 LINE - chr19:21022341-21022374 chr19 21022341 21022374 (AC)n Simple_repeat + chr1:9211304-9211520 chr1 9211304 9211520 MIR SINE + chr19:21136294-21136342 chr19 21136294 21136342 Alu SINE + chr19:21184657-21184698 chr19 21184657 21184698 A-rich Low_complexity + chr19:21184733-21184754 chr19 21184733 21184754 (A)n Simple_repeat + chr19:21243002-21243291 chr19 21243002 21243291 AluSq4 SINE + chr19:21244585-21244609 chr19 21244585 21244609 (A)n Simple_repeat + chr19:21244612-21244904 chr19 21244612 21244904 AluSg7 SINE + chr19:21244909-21245202 chr19 21244909 21245202 AluY SINE + chr19:21245891-21245921 chr19 21245891 21245921 (TTAT)n Simple_repeat + chr19:21247068-21247343 chr19 21247068 21247343 AluSg SINE + chr19:21247343-21247416 chr19 21247343 21247416 AluSx SINE - chr19:21250065-21250346 chr19 21250065 21250346 AluSp SINE + chr19:21250449-21250749 chr19 21250449 21250749 AluSp SINE + chr19:21251435-21251739 chr19 21251435 21251739 AluSc SINE + chr19:21253180-21253481 chr19 21253180 21253481 AluSx1 SINE + chr19:21253690-21253978 chr19 21253690 21253978 AluSg4 SINE + chr19:21254340-21254520 chr19 21254340 21254520 AluSp SINE + chr19:21255068-21255150 chr19 21255068 21255150 L1MA9 LINE - chr19:21255154-21255355 chr19 21255154 21255355 AluSx SINE + chr19:21257011-21257047 chr19 21257011 21257047 (ATT)n Simple_repeat + chr19:21260935-21260990 chr19 21260935 21260990 (TTATT)n Simple_repeat + chr19:21262408-21262689 chr19 21262408 21262689 AluYk2 SINE + chr19:21262689-21262729 chr19 21262689 21262729 (AAAC)n Simple_repeat + chr19:21263979-21264148 chr19 21263979 21264148 AluSx SINE + chr19:21264349-21264590 chr19 21264349 21264590 MER33 DNA + chr19:212814-212855 chr19 212814 212855 (AAC)n Simple_repeat + chr19:21309545-21309627 chr19 21309545 21309627 AluYf1 SINE - chr19:21309652-21309675 chr19 21309652 21309675 (TTG)n Simple_repeat + chr19:21311550-21312074 chr19 21311550 21312074 HERV1_LTRd LTR + chr19:21313554-21313887 chr19 21313554 21313887 HERVH-int LTR + chr19:21318059-21318223 chr19 21318059 21318223 MER57E3 LTR + chr19:21318799-21319115 chr19 21318799 21319115 AluSg7 SINE + chr19:21319180-21319738 chr19 21319180 21319738 AluSg SINE + chr19:21319307-21319564 chr19 21319307 21319564 AluSp SINE + chr19:21320704-21321001 chr19 21320704 21321001 AluSx4 SINE + chr19:21321486-21321730 chr19 21321486 21321730 AluSq2 SINE + chr19:21321745-21322048 chr19 21321745 21322048 MER57B1 LTR + chr19:21322048-21322345 chr19 21322048 21322345 AluSx3 SINE + chr19:21322918-21323023 chr19 21322918 21323023 MIRb SINE + chr19:21323058-21323566 chr19 21323058 21323566 MLT1H LTR + chr19:21324140-21324430 chr19 21324140 21324430 MER33 DNA + chr19:21373457-21373758 chr19 21373457 21373758 AluSp SINE - chr19:21373975-21374269 chr19 21373975 21374269 AluSg SINE + chr19:21374964-21375268 chr19 21374964 21375268 AluSx3 SINE - chr19:21375681-21377241 chr19 21375681 21377241 L1P4 LINE + chr19:21376050-21376336 chr19 21376050 21376336 AluSp SINE + chr19:21377276-21377547 chr19 21377276 21377547 AluSx1 SINE - chr19:21378863-21378893 chr19 21378863 21378893 (GT)n Simple_repeat + chr19:21379192-21379502 chr19 21379192 21379502 AluSx SINE + chr19:21379722-21379825 chr19 21379722 21379825 L2a LINE - chr19:21379829-21380324 chr19 21379829 21380324 L1ME3A LINE + chr1:9213896-9213997 chr1 9213896 9213997 MER5A DNA - chr19:21391127-21391309 chr19 21391127 21391309 L1M5 LINE + chr19:21391289-21391851 chr19 21391289 21391851 L1ME3E LINE + chr19:21391508-21391793 chr19 21391508 21391793 AluSc SINE + chr19:21392612-21392656 chr19 21392612 21392656 A-rich Low_complexity + chr19:21392827-21393278 chr19 21392827 21393278 LTR22E LTR + chr19:21394334-21394638 chr19 21394334 21394638 AluSq2 SINE + chr19:21397479-21397513 chr19 21397479 21397513 A-rich Low_complexity + chr19:21398487-21398798 chr19 21398487 21398798 AluSp SINE + chr19:21399871-21399899 chr19 21399871 21399899 (GAATA)n Simple_repeat + chr19:21401602-21401920 chr19 21401602 21401920 AluSx SINE + chr19:21402660-21402841 chr19 21402660 21402841 L1MA3 LINE + chr19:21403257-21403315 chr19 21403257 21403315 (ATCTTAC)n Simple_repeat + chr19:21405548-21405858 chr19 21405548 21405858 AluYm1 SINE + chr19:21406059-21406353 chr19 21406059 21406353 AluSp SINE + chr19:21406747-21407043 chr19 21406747 21407043 AluSp SINE + chr19:21407043-21407206 chr19 21407043 21407206 L1M4b LINE + chr19:21408889-21409207 chr19 21408889 21409207 AluSq2 SINE + chr19:21410964-21411432 chr19 21410964 21411432 MER9B LTR + chr19:21414794-21415078 chr19 21414794 21415078 AluJr SINE + chr19:21415207-21415375 chr19 21415207 21415375 FLAM_C SINE + chr19:21415498-21415794 chr19 21415498 21415794 AluSq4 SINE + chr19:21416591-21417034 chr19 21416591 21417034 LTR3B LTR + chr19:21417271-21417319 chr19 21417271 21417319 A-rich Low_complexity + chr19:21420432-21420867 chr19 21420432 21420867 LTR3B LTR + chr19:21420884-21421198 chr19 21420884 21421198 AluSp SINE + chr19:21423547-21423860 chr19 21423547 21423860 AluSq2 SINE + chr19:21424683-21424796 chr19 21424683 21424796 AluJr SINE + chr19:21425086-21425300 chr19 21425086 21425300 L1M3a LINE + chr19:21425346-21425382 chr19 21425346 21425382 A-rich Low_complexity + chr19:21425382-21425661 chr19 21425382 21425661 AluSc SINE + chr19:21427028-21427105 chr19 21427028 21427105 L2 LINE - chr19:21428062-21428086 chr19 21428062 21428086 (CA)n Simple_repeat + chr19:21428293-21428328 chr19 21428293 21428328 A-rich Low_complexity + chr19:21428413-21428532 chr19 21428413 21428532 MER5A1 DNA - chr19:21428724-21428930 chr19 21428724 21428930 L1MC4 LINE + chr19:21430159-21430263 chr19 21430159 21430263 MER5A DNA - chr19:21431495-21431540 chr19 21431495 21431540 L2c LINE + chr19:21432425-21432520 chr19 21432425 21432520 LTR23 LTR - chr19:21433804-21434113 chr19 21433804 21434113 AluSg SINE + chr19:21434693-21434986 chr19 21434693 21434986 AluSg SINE + chr19:21435112-21435415 chr19 21435112 21435415 AluSg4 SINE + chr19:21435521-21435811 chr19 21435521 21435811 AluSz SINE + chr19:21435967-21436076 chr19 21435967 21436076 LTR15 LTR + chr19:21444631-21444807 chr19 21444631 21444807 (AAGA)n Simple_repeat + chr19:21444809-21444836 chr19 21444809 21444836 (AGGC)n Simple_repeat + chr19:21447085-21447137 chr19 21447085 21447137 L1PREC2 LINE + chr19:21448510-21448790 chr19 21448510 21448790 AluSc5 SINE + chr19:21448790-21448821 chr19 21448790 21448821 (AAAAT)n Simple_repeat + chr19:21449111-21449417 chr19 21449111 21449417 AluSx1 SINE + chr19:21450685-21450822 chr19 21450685 21450822 MER92B LTR + chr19:21450838-21451288 chr19 21450838 21451288 MER41A LTR + chr19:21451652-21451960 chr19 21451652 21451960 AluSc SINE + chr19:21453066-21453364 chr19 21453066 21453364 AluSc SINE + chr19:21460089-21460225 chr19 21460089 21460225 AluSq SINE - chr19:21462263-21462543 chr19 21462263 21462543 AluSz SINE + chr19:21462612-21462649 chr19 21462612 21462649 (GTTT)n Simple_repeat + chr19:21465627-21469071 chr19 21465627 21469071 L1PA17 LINE - chr19:21466103-21466409 chr19 21466103 21466409 AluSx3 SINE + chr19:21469066-21472324 chr19 21469066 21472324 L1MA8 LINE + chr19:21470954-21471249 chr19 21470954 21471249 AluSz SINE - chr19:21472797-21473091 chr19 21472797 21473091 AluSg SINE + chr19:21473394-21473692 chr19 21473394 21473692 AluY SINE + chr1:9214945-9215004 chr1 9214945 9215004 AluJr4 SINE + chr19:21512902-21513208 chr19 21512902 21513208 AluSq SINE + chr19:21513257-21513432 chr19 21513257 21513432 AluSg4 SINE - chr19:21513839-21514150 chr19 21513839 21514150 AluYa5 SINE + chr19:21514152-21514328 chr19 21514152 21514328 AluSx4 SINE + chr19:21515335-21515414 chr19 21515335 21515414 MIRb SINE - chr19:21515570-21515867 chr19 21515570 21515867 AluJb SINE + chr19:21515950-21516249 chr19 21515950 21516249 AluSp SINE + chr19:21516297-21516602 chr19 21516297 21516602 AluSq2 SINE + chr19:21517153-21517456 chr19 21517153 21517456 AluSq2 SINE + chr19:21517957-21518105 chr19 21517957 21518105 FRAM SINE + chr19:21518212-21518276 chr19 21518212 21518276 AluSp SINE - chr19:21518267-21518316 chr19 21518267 21518316 LTR10E LTR - chr19:21528093-21528146 chr19 21528093 21528146 Alu SINE - chr19:21529146-21529449 chr19 21529146 21529449 AluSc8 SINE + chr19:21530321-21530620 chr19 21530321 21530620 AluSg4 SINE + chr19:21532480-21532762 chr19 21532480 21532762 AluJo SINE + chr19:21533778-21534087 chr19 21533778 21534087 AluSx1 SINE + chr19:21534089-21534391 chr19 21534089 21534391 AluY SINE + chr19:21534400-21534457 chr19 21534400 21534457 AluSq2 SINE - chr19:21539288-21539386 chr19 21539288 21539386 MIRb SINE + chr19:21539439-21539935 chr19 21539439 21539935 MLT1H LTR + chr19:21540491-21540718 chr19 21540491 21540718 MER33 DNA + chr19:21541307-21541377 chr19 21541307 21541377 MER33 DNA + chr19:21563197-21563338 chr19 21563197 21563338 MIR3 SINE + chr19:21564291-21564594 chr19 21564291 21564594 AluY SINE - chr19:21564855-21565031 chr19 21564855 21565031 AluSz SINE - chr19:21565041-21565336 chr19 21565041 21565336 AluSc SINE - chr19:21567976-21568286 chr19 21567976 21568286 AluSx3 SINE + chr19:21569523-21569806 chr19 21569523 21569806 AluSp SINE - chr19:21569993-21570291 chr19 21569993 21570291 AluSq2 SINE - chr19:21571522-21571700 chr19 21571522 21571700 L1MA3 LINE - chr19:21571703-21572001 chr19 21571703 21572001 AluSx1 SINE + chr19:21576256-21576348 chr19 21576256 21576348 AluJo SINE + chr19:21576563-21576969 chr19 21576563 21576969 MIR SINE + chr19:21577100-21577227 chr19 21577100 21577227 AluYh3 SINE + chr19:21577595-21577639 chr19 21577595 21577639 FLAM_C SINE - chr19:21579038-21579105 chr19 21579038 21579105 (TTTC)n Simple_repeat + chr19:21579111-21579160 chr19 21579111 21579160 (TC)n Simple_repeat + chr19:21579478-21579536 chr19 21579478 21579536 MER33 DNA + chr19:215828-215854 chr19 215828 215854 (ATTTT)n Simple_repeat + chr19:21610530-21610565 chr19 21610530 21610565 (ATTTTT)n Simple_repeat + chr19:21610750-21611039 chr19 21610750 21611039 AluSx1 SINE + chr19:21611039-21611086 chr19 21611039 21611086 (ATTTTT)n Simple_repeat + chr19:21611117-21611308 chr19 21611117 21611308 AluSg SINE + chr19:21611824-21611855 chr19 21611824 21611855 (TTTTCTT)n Simple_repeat + chr19:21624851-21625467 chr19 21624851 21625467 LTR43 LTR - chr19:21625783-21627216 chr19 21625783 21627216 SVA_B Retroposon - chr19:21628427-21628729 chr19 21628427 21628729 AluSx1 SINE - chr19:21628944-21630298 chr19 21628944 21630298 L1PA7 LINE - chr19:21630307-21630396 chr19 21630307 21630396 MER57-int LTR + chr19:21630396-21631161 chr19 21630396 21631161 L1P3 LINE - chr19:21632222-21632501 chr19 21632222 21632501 AluSx4 SINE - chr19:21632939-21633233 chr19 21632939 21633233 AluSx1 SINE + chr19:21633355-21633655 chr19 21633355 21633655 AluSg7 SINE + chr19:21633720-21633877 chr19 21633720 21633877 AluSq4 SINE + chr19:21633877-21633925 chr19 21633877 21633925 AluSz6 SINE - chr19:21634334-21634630 chr19 21634334 21634630 AluSz6 SINE + chr19:21634633-21634786 chr19 21634633 21634786 L1P4 LINE - chr19:21634838-21635076 chr19 21634838 21635076 AluSp SINE - chr19:21635293-21635485 chr19 21635293 21635485 L1MA2 LINE + chr19:21635805-21636096 chr19 21635805 21636096 AluSp SINE + chr19:21636330-21636636 chr19 21636330 21636636 AluSq4 SINE + chr19:21637101-21638020 chr19 21637101 21638020 MER41-int LTR - chr19:21637467-21637777 chr19 21637467 21637777 AluSc SINE + chr19:21638020-21638185 chr19 21638020 21638185 AluSg SINE + chr19:21638187-21638253 chr19 21638187 21638253 FRAM SINE + chr19:21638257-21639312 chr19 21638257 21639312 MER4-int LTR - chr19:21639385-21639799 chr19 21639385 21639799 LTR23 LTR - chr19:21639832-21640561 chr19 21639832 21640561 AluSx SINE + chr19:21639916-21640219 chr19 21639916 21640219 AluSg7 SINE + chr19:21640219-21640396 chr19 21640219 21640396 AluSx3 SINE + chr19:21640571-21641159 chr19 21640571 21641159 LTR4 LTR - chr19:21641262-21641541 chr19 21641262 21641541 AluSx1 SINE - chr19:21641643-21641949 chr19 21641643 21641949 AluSx SINE - chr19:21642244-21642552 chr19 21642244 21642552 AluY SINE + chr19:21642580-21643766 chr19 21642580 21643766 MSTA-int LTR - chr19:21642700-21642998 chr19 21642700 21642998 AluSx SINE - chr19:21643051-21643354 chr19 21643051 21643354 AluSx1 SINE - chr19:21643776-21643864 chr19 21643776 21643864 MLT1A LTR - chr19:21643887-21644406 chr19 21643887 21644406 L1M4b LINE + chr19:21643944-21644243 chr19 21643944 21644243 AluY SINE - chr19:21644406-21644696 chr19 21644406 21644696 AluSg7 SINE + chr19:21645138-21646251 chr19 21645138 21646251 MER57E3 LTR + chr19:21645510-21645806 chr19 21645510 21645806 AluSp SINE + chr19:21645869-21646179 chr19 21645869 21646179 AluSx SINE - chr19:21647180-21647491 chr19 21647180 21647491 AluSq2 SINE + chr19:21647551-21647787 chr19 21647551 21647787 L1M3d LINE + chr19:21647787-21647917 chr19 21647787 21647917 AluSx4 SINE + chr19:21647922-21648223 chr19 21647922 21648223 AluY SINE + chr19:21652536-21652666 chr19 21652536 21652666 Chap1_Mam DNA + chr19:21652666-21652963 chr19 21652666 21652963 AluSx SINE + chr19:21652963-21653023 chr19 21652963 21653023 (AAGG)n Simple_repeat + chr19:21653033-21653074 chr19 21653033 21653074 A-rich Low_complexity + chr19:21653511-21653653 chr19 21653511 21653653 AluJb SINE - chr19:21656371-21656448 chr19 21656371 21656448 AluJb SINE + chr19:21657422-21657510 chr19 21657422 21657510 MIR3 SINE + chr19:21658637-21658939 chr19 21658637 21658939 AluSq SINE + chr19:21659343-21659404 chr19 21659343 21659404 Alu SINE - chr19:21659584-21659888 chr19 21659584 21659888 AluSz SINE + chr19:21660055-21660335 chr19 21660055 21660335 AluSp SINE + chr19:21664426-21664719 chr19 21664426 21664719 AluJb SINE + chr19:21664780-21664787 chr19 21664780 21664787 (TTTTAAT)n Simple_repeat + chr19:21664787-21664832 chr19 21664787 21664832 (ATTT)n Simple_repeat + chr19:21664850-21664983 chr19 21664850 21664983 AluJo SINE - chr19:21665163-21665460 chr19 21665163 21665460 AluSx SINE + chr19:21666960-21667054 chr19 21666960 21667054 (TCTTC)n Simple_repeat + chr19:21674272-21674489 chr19 21674272 21674489 AluSp SINE + chr19:21676812-21677104 chr19 21676812 21677104 BSR/Beta Satellite - chr19:21681656-21681795 chr19 21681656 21681795 MER41B LTR - chr19:21681985-21682278 chr19 21681985 21682278 AluSx1 SINE + chr19:21682283-21682575 chr19 21682283 21682575 AluSg7 SINE + chr19:21682730-21682774 chr19 21682730 21682774 (TG)n Simple_repeat + chr19:21685945-21685970 chr19 21685945 21685970 (T)n Simple_repeat + chr19:21686296-21686356 chr19 21686296 21686356 (AAT)n Simple_repeat + chr19:21686384-21686483 chr19 21686384 21686483 MLT1H LTR + chr19:21687400-21687526 chr19 21687400 21687526 MER33 DNA + chr19:21687920-21688061 chr19 21687920 21688061 MER33 DNA + chr1:9219601-9219627 chr1 9219601 9219627 (A)n Simple_repeat + chr19:222732-223116 chr19 222732 223116 L1ME4c LINE + chr19:22278669-22278678 chr19 22278669 22278678 (TATG)n Simple_repeat + chr19:222872-222992 chr19 222872 222992 AluJr4 SINE - chr19:22303289-22303305 chr19 22303289 22303305 (TGTGTA)n Simple_repeat + chr19:22303595-22303609 chr19 22303595 22303609 (TGTGTA)n Simple_repeat + chr19:223157-223260 chr19 223157 223260 U6 snRNA - chr19:223762-223869 chr19 223762 223869 Charlie29b DNA - chr1:9225201-9225248 chr1 9225201 9225248 MIRc SINE - chr1:9228567-9228605 chr1 9228567 9228605 (GT)n Simple_repeat + chr19:23018318-23018347 chr19 23018318 23018347 (TTTG)n Simple_repeat + chr19:23028691-23028709 chr19 23028691 23028709 (T)n Simple_repeat + chr19:23029615-23029643 chr19 23029615 23029643 (T)n Simple_repeat + chr19:23120097-23120161 chr19 23120097 23120161 MIRc SINE - chr19:23141456-23141620 chr19 23141456 23141620 AluSz6 SINE + chr19:23143359-23143444 chr19 23143359 23143444 MER5A DNA + chr19:23143534-23143624 chr19 23143534 23143624 THE1D LTR + chr19:23143735-23143801 chr19 23143735 23143801 Tigger2 DNA + chr19:23330372-23330425 chr19 23330372 23330425 Alu SINE + chr19:23330425-23332535 chr19 23330425 23332535 L1M2 LINE - chr19:23330837-23331130 chr19 23330837 23331130 AluSx SINE + chr19:23331437-23331469 chr19 23331437 23331469 (T)n Simple_repeat + chr19:23333635-23333661 chr19 23333635 23333661 L1P4 LINE + chr1:9233851-9233881 chr1 9233851 9233881 (AAAAT)n Simple_repeat + chr19:23396777-23397277 chr19 23396777 23397277 L1MA7 LINE + chr19:23399648-23399945 chr19 23399648 23399945 AluSg SINE - chr19:23400072-23400286 chr19 23400072 23400286 AluSx4 SINE + chr19:23400312-23400969 chr19 23400312 23400969 L1M2 LINE + chr19:23400603-23400862 chr19 23400603 23400862 AluYk2 SINE + chr19:23401076-23401374 chr19 23401076 23401374 AluSx SINE - chr19:23402191-23402477 chr19 23402191 23402477 AluSx1 SINE - chr19:23402477-23402565 chr19 23402477 23402565 L1MA2 LINE + chr19:23402568-23402765 chr19 23402568 23402765 L1MA2 LINE + chr19:23403207-23403256 chr19 23403207 23403256 (CTTACAT)n Simple_repeat + chr19:23403453-23403734 chr19 23403453 23403734 AluSx SINE + chr19:23403738-23403949 chr19 23403738 23403949 AluSx3 SINE + chr19:23437492-23437585 chr19 23437492 23437585 L2b LINE + chr19:23438232-23440591 chr19 23438232 23440591 BSR/Beta Satellite + chr19:23438270-23438562 chr19 23438270 23438562 AluSx1 SINE - chr19:23440194-23440496 chr19 23440194 23440496 AluSp SINE + chr19:23440871-23440949 chr19 23440871 23440949 BSR/Beta Satellite + chr19:23441420-23445010 chr19 23441420 23445010 BSR/Beta Satellite + chr19:23443232-23443540 chr19 23443232 23443540 AluSp SINE + chr19:23449797-23449981 chr19 23449797 23449981 MER92B LTR + chr19:23450000-23450170 chr19 23450000 23450170 AluSg4 SINE + chr19:23450185-23450459 chr19 23450185 23450459 AluSx SINE + chr19:23452418-23452524 chr19 23452418 23452524 MIR SINE - chr19:23452819-23453116 chr19 23452819 23453116 AluSq2 SINE + chr19:23453516-23453738 chr19 23453516 23453738 AluSx3 SINE - chr19:23453759-23453919 chr19 23453759 23453919 AluSx SINE + chr19:23454260-23454867 chr19 23454260 23454867 L1PA13 LINE - chr19:23455285-23455543 chr19 23455285 23455543 AluSq2 SINE + chr19:23455777-23456556 chr19 23455777 23456556 MER57E3 LTR + chr19:23456229-23456527 chr19 23456229 23456527 AluSz SINE + chr19:23464549-23464587 chr19 23464549 23464587 FLAM_A SINE + chr19:23464843-23464893 chr19 23464843 23464893 (TTCTGT)n Simple_repeat + chr19:23465381-23465452 chr19 23465381 23465452 A-rich Low_complexity + chr19:23465498-23465523 chr19 23465498 23465523 (TC)n Simple_repeat + chr19:23465588-23465658 chr19 23465588 23465658 FRAM SINE + chr19:23465700-23465746 chr19 23465700 23465746 A-rich Low_complexity + chr19:23466459-23466559 chr19 23466459 23466559 (TGTC)n Simple_repeat + chr19:23466707-23466755 chr19 23466707 23466755 GA-rich Low_complexity + chr19:23466832-23466923 chr19 23466832 23466923 AluJb SINE + chr19:23467036-23467061 chr19 23467036 23467061 (AACAAT)n Simple_repeat + chr19:23467349-23467397 chr19 23467349 23467397 (AACAAT)n Simple_repeat + chr19:23467449-23467507 chr19 23467449 23467507 (TGTCTG)n Simple_repeat + chr19:23467686-23467745 chr19 23467686 23467745 A-rich Low_complexity + chr19:23467823-23467938 chr19 23467823 23467938 AluJb SINE + chr19:23469206-23469235 chr19 23469206 23469235 (TC)n Simple_repeat + chr19:23469413-23469453 chr19 23469413 23469453 FLAM_A SINE + chr19:23469721-23469740 chr19 23469721 23469740 (CT)n Simple_repeat + chr19:23469925-23470010 chr19 23469925 23470010 AluJb SINE + chr19:23470518-23470603 chr19 23470518 23470603 AluJb SINE + chr19:23471057-23471153 chr19 23471057 23471153 MIR SINE + chr19:23477203-23477224 chr19 23477203 23477224 (GT)n Simple_repeat + chr19:23487992-23488051 chr19 23487992 23488051 (AT)n Simple_repeat + chr19:23507319-23507404 chr19 23507319 23507404 (TATA)n Simple_repeat + chr19:23508825-23508965 chr19 23508825 23508965 L2c LINE + chr19:23516569-23516596 chr19 23516569 23516596 (TAT)n Simple_repeat + chr19:23520088-23520173 chr19 23520088 23520173 (TA)n Simple_repeat + chr1:9235427-9235675 chr1 9235427 9235675 MIR SINE + chr19:23578983-23579105 chr19 23578983 23579105 AluSz SINE + chr19:23581354-23581381 chr19 23581354 23581381 (GTTTT)n Simple_repeat + chr1:9235816-9235888 chr1 9235816 9235888 MIRc SINE - chr19:23582074-23582380 chr19 23582074 23582380 MER4E LTR - chr19:23582380-23582762 chr19 23582380 23582762 BSR/Beta Satellite + chr19:23582770-23583081 chr19 23582770 23583081 AluSx SINE + chr19:23583081-23583819 chr19 23583081 23583819 BSR/Beta Satellite + chr19:23585931-23588160 chr19 23585931 23588160 BSR/Beta Satellite + chr19:23586160-23586807 chr19 23586160 23586807 AluSx3 SINE - chr19:23586807-23586921 chr19 23586807 23586921 AluSx3 SINE - chr1:9235895-9235971 chr1 9235895 9235971 FLAM_C SINE + chr19:23590086-23590398 chr19 23590086 23590398 AluSx SINE + chr19:23591160-23591467 chr19 23591160 23591467 AluSp SINE + chr19:23591694-23591756 chr19 23591694 23591756 (ATAG)n Simple_repeat + chr19:23591757-23592044 chr19 23591757 23592044 AluJr SINE + chr19:23592157-23592191 chr19 23592157 23592191 (AAAAAG)n Simple_repeat + chr19:23592753-23592806 chr19 23592753 23592806 Alu SINE + chr19:23592819-23592878 chr19 23592819 23592878 (GGGA)n Simple_repeat + chr19:23592900-23592999 chr19 23592900 23592999 FLAM_C SINE + chr19:23593006-23593053 chr19 23593006 23593053 GA-rich Low_complexity + chr19:23593070-23593248 chr19 23593070 23593248 LTR22A LTR - chr19:23593248-23593443 chr19 23593248 23593443 AluSg4 SINE + chr19:23594259-23594554 chr19 23594259 23594554 AluSx1 SINE + chr19:23595149-23595226 chr19 23595149 23595226 AluSx3 SINE - chr19:23595246-23595427 chr19 23595246 23595427 AluSz SINE + chr19:23595483-23595537 chr19 23595483 23595537 L2b LINE + chr19:23597140-23597386 chr19 23597140 23597386 AluSq SINE + chr19:23597621-23598384 chr19 23597621 23598384 MER57E3 LTR + chr19:23598058-23598340 chr19 23598058 23598340 AluSz6 SINE + chr19:23600674-23600753 chr19 23600674 23600753 AluJb SINE - chr19:23601063-23601112 chr19 23601063 23601112 (AC)n Simple_repeat + chr19:23601091-23601152 chr19 23601091 23601152 (AT)n Simple_repeat + chr19:23606179-23606209 chr19 23606179 23606209 (GT)n Simple_repeat + chr19:23609479-23609535 chr19 23609479 23609535 (AACTAAC)n Simple_repeat + chr19:23609535-23609544 chr19 23609535 23609544 (AAT)n Simple_repeat + chr19:23609593-23609627 chr19 23609593 23609627 (TCTCTC)n Simple_repeat + chr19:23609752-23609791 chr19 23609752 23609791 (TA)n Simple_repeat + chr19:23609810-23609873 chr19 23609810 23609873 A-rich Low_complexity + chr19:23610174-23610226 chr19 23610174 23610226 (AAT)n Simple_repeat + chr19:23610373-23610428 chr19 23610373 23610428 AluJb SINE - chr19:23610671-23610762 chr19 23610671 23610762 AluJb SINE + chr19:23611535-23611580 chr19 23611535 23611580 A-rich Low_complexity + chr19:23612519-23612607 chr19 23612519 23612607 AluJr SINE + chr19:23612717-23612780 chr19 23612717 23612780 A-rich Low_complexity + chr19:23612840-23612873 chr19 23612840 23612873 (TC)n Simple_repeat + chr19:23619237-23619329 chr19 23619237 23619329 AluYi6 SINE + chr19:23619438-23619497 chr19 23619438 23619497 (AACA)n Simple_repeat + chr19:23620191-23620213 chr19 23620191 23620213 (T)n Simple_repeat + chr19:23620240-23620279 chr19 23620240 23620279 GA-rich Low_complexity + chr19:23620329-23620389 chr19 23620329 23620389 (ATTT)n Simple_repeat + chr19:23620557-23620642 chr19 23620557 23620642 AluJb SINE - chr19:23621023-23621106 chr19 23621023 23621106 A-rich Low_complexity + chr19:23621201-23621232 chr19 23621201 23621232 (A)n Simple_repeat + chr19:23621265-23621382 chr19 23621265 23621382 A-rich Low_complexity + chr19:23621389-23621474 chr19 23621389 23621474 AluJr SINE + chr19:23621652-23621728 chr19 23621652 23621728 A-rich Low_complexity + chr19:23621764-23621799 chr19 23621764 23621799 (TC)n Simple_repeat + chr19:23622762-23622831 chr19 23622762 23622831 A-rich Low_complexity + chr19:23622882-23622911 chr19 23622882 23622911 (CA)n Simple_repeat + chr19:23623006-23623041 chr19 23623006 23623041 A-rich Low_complexity + chr19:23623110-23623200 chr19 23623110 23623200 AluJb SINE + chr19:23623584-23623627 chr19 23623584 23623627 A-rich Low_complexity + chr19:23623694-23623788 chr19 23623694 23623788 AluJb SINE + chr19:23623903-23623944 chr19 23623903 23623944 (AACAAT)n Simple_repeat + chr19:23624024-23624071 chr19 23624024 23624071 (CT)n Simple_repeat + chr19:23625417-23625482 chr19 23625417 23625482 LTR54 LTR + chr19:23626728-23626802 chr19 23626728 23626802 MIR SINE + chr19:23630939-23630977 chr19 23630939 23630977 A-rich Low_complexity + chr19:23631697-23631726 chr19 23631697 23631726 (GT)n Simple_repeat + chr19:23633668-23633703 chr19 23633668 23633703 (TTTTC)n Simple_repeat + chr19:23648115-23648139 chr19 23648115 23648139 (TTAA)n Simple_repeat + chr19:23655174-23655252 chr19 23655174 23655252 (TTATT)n Simple_repeat + chr19:23655944-23656019 chr19 23655944 23656019 L2d2 LINE - chr19:23657471-23657505 chr19 23657471 23657505 MIR SINE + chr19:23657625-23657701 chr19 23657625 23657701 MER20 DNA + chr19:23659826-23659877 chr19 23659826 23659877 AluSx4 SINE - chr19:23661547-23661637 chr19 23661547 23661637 L1P5 LINE + chr1:9236650-9236766 chr1 9236650 9236766 hAT-N1a_Mam DNA - chr19:23667878-23667911 chr19 23667878 23667911 (AAC)n Simple_repeat + chr19:23680402-23680434 chr19 23680402 23680434 (AT)n Simple_repeat + chr19:23681688-23681746 chr19 23681688 23681746 (AATT)n Simple_repeat + chr19:23682296-23682387 chr19 23682296 23682387 (TTCT)n Simple_repeat + chr19:23682568-23682617 chr19 23682568 23682617 MSTA1 LTR - chr19:23685317-23685358 chr19 23685317 23685358 (TA)n Simple_repeat + chr19:23687711-23687745 chr19 23687711 23687745 (AAATA)n Simple_repeat + chr19:23707886-23707989 chr19 23707886 23707989 BSR/Beta Satellite + chr1:9237265-9237367 chr1 9237265 9237367 AluSg SINE - chr1:9239842-9240053 chr1 9239842 9240053 MIRb SINE - chr19:24011738-24011771 chr19 24011738 24011771 (AC)n Simple_repeat + chr19:24012100-24012402 chr19 24012100 24012402 AluSp SINE - chr19:24012950-24013246 chr19 24012950 24013246 AluSx SINE - chr19:24017729-24017924 chr19 24017729 24017924 L1MA2 LINE - chr19:24019158-24019192 chr19 24019158 24019192 (AC)n Simple_repeat + chr19:24024021-24024282 chr19 24024021 24024282 AluYm1 SINE + chr19:24024846-24024999 chr19 24024846 24024999 MER5A1 DNA + chr19:24026303-24026368 chr19 24026303 24026368 L2 LINE + chr19:24027120-24027255 chr19 24027120 24027255 L1P5 LINE - chr19:24027504-24027531 chr19 24027504 24027531 (ATA)n Simple_repeat + chr19:24028754-24028839 chr19 24028754 24028839 L1P4 LINE - chr1:9240319-9240490 chr1 9240319 9240490 L2a LINE + chr19:24041037-24041211 chr19 24041037 24041211 L1PB4 LINE + chr19:24042442-24042517 chr19 24042442 24042517 L1M LINE - chr19:24043507-24043547 chr19 24043507 24043547 (ATA)n Simple_repeat + chr19:24045528-24045573 chr19 24045528 24045573 L1PA4 LINE + chr19:24045694-24045798 chr19 24045694 24045798 AluSc SINE - chr19:24055164-24055203 chr19 24055164 24055203 (GTTAGAG)n Simple_repeat + chr19:24056309-24056387 chr19 24056309 24056387 MER20 DNA - chr19:24057694-24057719 chr19 24057694 24057719 (ATTT)n Simple_repeat + chr19:24057999-24058066 chr19 24057999 24058066 L2d2 LINE + chr19:24060888-24060938 chr19 24060888 24060938 (AATA)n Simple_repeat + chr19:24082615-24082644 chr19 24082615 24082644 (TGT)n Simple_repeat + chr1:9241632-9241827 chr1 9241632 9241827 MIRb SINE - chr1:9244960-9244994 chr1 9244960 9244994 (GAAT)n Simple_repeat + chr19:29196416-29196458 chr19 29196416 29196458 L2a LINE + chr19:29201856-29201917 chr19 29201856 29201917 (GT)n Simple_repeat + chr19:29213083-29213117 chr19 29213083 29213117 (CTTTC)n Simple_repeat + chr19:29217048-29217088 chr19 29217048 29217088 (TTTCTCC)n Simple_repeat + chr19:29694533-29694550 chr19 29694533 29694550 (T)n Simple_repeat + chr19:34398268-34398441 chr19 34398268 34398441 MIRc SINE + chr19:34961280-34961402 chr19 34961280 34961402 FLAM_A SINE + chr19:35304445-35304468 chr19 35304445 35304468 (TTTG)n Simple_repeat + chr1:93611720-93611748 chr1 93611720 93611748 (GT)n Simple_repeat + chr19:36379013-36379055 chr19 36379013 36379055 G-rich Low_complexity + chr19:36808055-36808359 chr19 36808055 36808359 AluSx SINE - chr19:36815774-36816331 chr19 36815774 36816331 LTR6B LTR - chr19:36816331-36821945 chr19 36816331 36821945 HERVS71-int LTR - chr19:37268758-37268777 chr19 37268758 37268777 (TAA)n Simple_repeat + chr19:37271115-37271153 chr19 37271115 37271153 Alu SINE - chr19:37298133-37298163 chr19 37298133 37298163 (TGTTT)n Simple_repeat + chr19:37302536-37302589 chr19 37302536 37302589 MADE1 DNA - chr19:37307842-37307947 chr19 37307842 37307947 L2a LINE - chr19:37735580-37735590 chr19 37735580 37735590 (TTTATT)n Simple_repeat + chr19:37735613-37735658 chr19 37735613 37735658 A-rich Low_complexity + chr19:37753194-37753364 chr19 37753194 37753364 MER5A DNA + chr19:37755750-37756038 chr19 37755750 37756038 AluSx1 SINE - chr19:37756813-37756924 chr19 37756813 37756924 MER96B DNA - chr19:37794112-37794170 chr19 37794112 37794170 (CAGAGG)n Simple_repeat + chr19:37794813-37794840 chr19 37794813 37794840 (CA)n Simple_repeat + chr19:37797108-37797139 chr19 37797108 37797139 (CA)n Simple_repeat + chr19:37799736-37799768 chr19 37799736 37799768 (GT)n Simple_repeat + chr19:37801018-37801040 chr19 37801018 37801040 (AAAC)n Simple_repeat + chr1:93797242-93797282 chr1 93797242 93797282 MLT1M LTR - chr19:37977151-37977403 chr19 37977151 37977403 MIRb SINE + chr19:37977400-37977487 chr19 37977400 37977487 MIR SINE - chr19:37978301-37978448 chr19 37978301 37978448 L2a LINE - chr19:37989815-37989830 chr19 37989815 37989830 (TAA)n Simple_repeat + chr19:37990114-37990132 chr19 37990114 37990132 (TAA)n Simple_repeat + chr19:37992589-37992646 chr19 37992589 37992646 A-rich Low_complexity + chr1:93802956-93803078 chr1 93802956 93803078 MIR SINE + chr1:93806929-93807023 chr1 93806929 93807023 L2c LINE - chr19:38221042-38221106 chr19 38221042 38221106 MamTip2 DNA + chr19:38223388-38223554 chr19 38223388 38223554 L1MC5a LINE + chr19:38309751-38309775 chr19 38309751 38309775 (AAC)n Simple_repeat + chr19:38312729-38312842 chr19 38312729 38312842 AluJr SINE + chr19:39980870-39981380 chr19 39980870 39981380 MER102b DNA - chr19:39981017-39981328 chr19 39981017 39981328 AluJr SINE - chr19:39982160-39982662 chr19 39982160 39982662 AluJr SINE - chr19:39982693-39983033 chr19 39982693 39983033 MIR SINE + chr19:39982837-39982954 chr19 39982837 39982954 AluJr4 SINE + chr19:39983036-39983149 chr19 39983036 39983149 MIRb SINE + chr19:40487649-40487772 chr19 40487649 40487772 MER3 DNA + chr19:40487773-40488087 chr19 40487773 40488087 AluSz SINE - chr19:40824713-40824760 chr19 40824713 40824760 L2a LINE + chr19:42377007-42377149 chr19 42377007 42377149 MIR SINE - chr19:42733994-42734095 chr19 42733994 42734095 MIRc SINE + chr19:42901628-42901680 chr19 42901628 42901680 (TCAC)n Simple_repeat + chr19:44353418-44353529 chr19 44353418 44353529 MER5C DNA + chr19:44615588-44615612 chr19 44615588 44615612 (AAAC)n Simple_repeat + chr19:45582014-45582055 chr19 45582014 45582055 MIR1_Amn SINE + chr19:48407517-48407649 chr19 48407517 48407649 AluYa5 SINE + chr19:48434019-48434151 chr19 48434019 48434151 AluYa5 SINE + chr19:48444659-48445213 chr19 48444659 48445213 L1MC4 LINE + chr19:48444759-48444891 chr19 48444759 48444891 AluYa5 SINE + chr19:48450014-48450576 chr19 48450014 48450576 L1MC4 LINE + chr19:48450114-48450246 chr19 48450114 48450246 AluYa5 SINE + chr19:48455505-48455637 chr19 48455505 48455637 AluYa5 SINE + chr19:4909672-4909723 chr19 4909672 4909723 G-rich Low_complexity + chr19:4910523-4910558 chr19 4910523 4910558 (GAAT)n Simple_repeat + chr19:50342742-50343732 chr19 50342742 50343732 Charlie8 DNA + chr19:50352571-50352810 chr19 50352571 50352810 L2 LINE - chr19:50353032-50353210 chr19 50353032 50353210 L2 LINE + chr19:50598826-50599379 chr19 50598826 50599379 L1MC4 LINE - chr19:50599147-50599279 chr19 50599147 50599279 AluYa5 SINE - chr19:50601890-50602444 chr19 50601890 50602444 L1MC4 LINE - chr19:50602212-50602344 chr19 50602212 50602344 AluYa5 SINE - chr19:50604955-50605509 chr19 50604955 50605509 L1MC4 LINE - chr19:50605277-50605409 chr19 50605277 50605409 AluYa5 SINE - chr19:50608018-50608572 chr19 50608018 50608572 L1MC4 LINE - chr19:50608340-50608472 chr19 50608340 50608472 AluYa5 SINE - chr19:50613363-50613916 chr19 50613363 50613916 L1MC4 LINE - chr19:50613684-50613816 chr19 50613684 50613816 AluYa5 SINE - chr19:50618716-50619269 chr19 50618716 50619269 L1MC4 LINE - chr19:50619037-50619169 chr19 50619037 50619169 AluYa5 SINE - chr19:50624067-50624621 chr19 50624067 50624621 L1MC4 LINE - chr19:50624389-50624521 chr19 50624389 50624521 AluYa5 SINE - chr19:50629422-50629976 chr19 50629422 50629976 L1MC4 LINE - chr19:50629744-50629876 chr19 50629744 50629876 AluYa5 SINE - chr19:50634757-50635311 chr19 50634757 50635311 L1MC4 LINE - chr19:50635079-50635211 chr19 50635079 50635211 AluYa5 SINE - chr19:50640121-50640684 chr19 50640121 50640684 L1MC4 LINE - chr19:50640452-50640584 chr19 50640452 50640584 AluYa5 SINE - chr1:95151207-95151236 chr1 95151207 95151236 (AG)n Simple_repeat + chr1:95170371-95170402 chr1 95170371 95170402 (AG)n Simple_repeat + chr19:52333388-52333405 chr19 52333388 52333405 (A)n Simple_repeat + chr19:52347303-52347325 chr19 52347303 52347325 (T)n Simple_repeat + chr19:52358620-52358661 chr19 52358620 52358661 (TG)n Simple_repeat + chr19:52450256-52450310 chr19 52450256 52450310 L2d2 LINE + chr19:52463299-52463316 chr19 52463299 52463316 (A)n Simple_repeat + chr19:52730968-52731039 chr19 52730968 52731039 MER20 DNA - chr19:52731607-52731689 chr19 52731607 52731689 LTR16A1 LTR - chr19:52798383-52798407 chr19 52798383 52798407 (T)n Simple_repeat + chr19:52889146-52889454 chr19 52889146 52889454 AluY SINE + chr19:52895511-52895538 chr19 52895511 52895538 (CTTT)n Simple_repeat + chr19:52896651-52896676 chr19 52896651 52896676 (T)n Simple_repeat + chr19:52898622-52898731 chr19 52898622 52898731 L1M3 LINE - chr19:53016150-53016247 chr19 53016150 53016247 AluSz SINE + chr19:53016574-53016614 chr19 53016574 53016614 (T)n Simple_repeat + chr19:53060523-53060817 chr19 53060523 53060817 AluSq2 SINE - chr19:53065664-53065799 chr19 53065664 53065799 MLT1A0 LTR - chr19:53066589-53066793 chr19 53066589 53066793 AluJb SINE + chr19:53066794-53067035 chr19 53066794 53067035 HSMAR2 DNA + chr19:53094427-53094443 chr19 53094427 53094443 (TA)n Simple_repeat + chr19:53094733-53094746 chr19 53094733 53094746 (TA)n Simple_repeat + chr19:53194367-53194407 chr19 53194367 53194407 (TC)n Simple_repeat + chr19:53195649-53195678 chr19 53195649 53195678 (TTTG)n Simple_repeat + chr19:53199207-53199293 chr19 53199207 53199293 (AT)n Simple_repeat + chr19:53239256-53239364 chr19 53239256 53239364 AluYk11 SINE + chr19:53239529-53239566 chr19 53239529 53239566 (TAT)n Simple_repeat + chr19:53247876-53247904 chr19 53247876 53247904 (AAAC)n Simple_repeat + chr19:53248176-53248272 chr19 53248176 53248272 FLAM_C SINE + chr19:53251592-53251674 chr19 53251592 53251674 X8_LINE LINE + chr19:53260748-53260902 chr19 53260748 53260902 AluSz6 SINE + chr19:53261348-53261411 chr19 53261348 53261411 (TATGTG)n Simple_repeat + chr19:53261411-53261445 chr19 53261411 53261445 (TA)n Simple_repeat + chr19:53265731-53265751 chr19 53265731 53265751 (A)n Simple_repeat + chr19:53267358-53267407 chr19 53267358 53267407 GA-rich Low_complexity + chr19:53292696-53292798 chr19 53292696 53292798 LTR5 LTR + chr19:53293480-53293777 chr19 53293480 53293777 AluSx4 SINE + chr19:53293777-53293926 chr19 53293777 53293926 FRAM SINE + chr19:53295279-53295365 chr19 53295279 53295365 MER5B DNA + chr19:53295693-53295824 chr19 53295693 53295824 AluSx SINE + chr19:53296894-53297016 chr19 53296894 53297016 AluSq2 SINE + chr19:53297017-53297071 chr19 53297017 53297071 (CA)n Simple_repeat + chr19:53297826-53298124 chr19 53297826 53298124 AluSx3 SINE + chr19:53299146-53299450 chr19 53299146 53299450 AluJb SINE + chr19:53299459-53299507 chr19 53299459 53299507 MER51C LTR + chr19:53361361-53361444 chr19 53361361 53361444 AluJb SINE + chr19:53361825-53361920 chr19 53361825 53361920 L1M4 LINE - chr19:53364194-53364257 chr19 53364194 53364257 Alu SINE + chr19:53364257-53364289 chr19 53364257 53364289 (AAAC)n Simple_repeat + chr19:53364776-53364875 chr19 53364776 53364875 AluSz SINE - chr19:53364917-53364951 chr19 53364917 53364951 (AACTC)n Simple_repeat + chr19:53366123-53366248 chr19 53366123 53366248 AluSx3 SINE + chr19:53366280-53366440 chr19 53366280 53366440 AluSz6 SINE - chr19:53366456-53366499 chr19 53366456 53366499 (AT)n Simple_repeat + chr19:53408435-53408701 chr19 53408435 53408701 LTR7 LTR + chr19:53408768-53408867 chr19 53408768 53408867 AluSz6 SINE - chr19:53408909-53408943 chr19 53408909 53408943 (AACTC)n Simple_repeat + chr19:53411941-53412117 chr19 53411941 53412117 AluSz6 SINE + chr19:53412863-53412926 chr19 53412863 53412926 (ATATA)n Simple_repeat + chr19:53421460-53421622 chr19 53421460 53421622 AluSz SINE + chr19:53424938-53425212 chr19 53424938 53425212 AluSp SINE + chr19:53425285-53425428 chr19 53425285 53425428 AluSq2 SINE + chr19:53427682-53427786 chr19 53427682 53427786 AluJb SINE + chr19:53427844-53427914 chr19 53427844 53427914 L1M4 LINE - chr19:53428493-53428806 chr19 53428493 53428806 AluSx1 SINE - chr19:53430361-53430387 chr19 53430361 53430387 (T)n Simple_repeat + chr19:53506032-53506086 chr19 53506032 53506086 (TTTTGT)n Simple_repeat + chr19:53521047-53521074 chr19 53521047 53521074 (TCTC)n Simple_repeat + chr19:53608032-53608057 chr19 53608032 53608057 (TGTTA)n Simple_repeat + chr19:53609515-53609550 chr19 53609515 53609550 (ATGA)n Simple_repeat + chr19:53858127-53858175 chr19 53858127 53858175 FRAM SINE - chr19:53859288-53859508 chr19 53859288 53859508 HSMAR2 DNA + chr19:53859508-53859805 chr19 53859508 53859805 AluJr SINE + chr19:53927264-53927420 chr19 53927264 53927420 LTR40b LTR + chr19:53929070-53929219 chr19 53929070 53929219 AluSc SINE + chr19:53929219-53929271 chr19 53929219 53929271 LTR13A LTR + chr19:53929763-53930094 chr19 53929763 53930094 MER1B DNA + chr19:53932112-53932300 chr19 53932112 53932300 L1M4a2 LINE + chr19:53932357-53932442 chr19 53932357 53932442 AluY SINE + chr19:53932564-53932682 chr19 53932564 53932682 MER5A DNA + chr19:53933061-53933368 chr19 53933061 53933368 AluSx1 SINE + chr19:53934466-53934580 chr19 53934466 53934580 L1M4 LINE + chr19:53935139-53935179 chr19 53935139 53935179 (CCGCC)n Simple_repeat + chr19:53936192-53936256 chr19 53936192 53936256 (GAGCA)n Simple_repeat + chr1:95393972-95394095 chr1 95393972 95394095 AluJr4 SINE + chr19:53940288-53940590 chr19 53940288 53940590 AluSx3 SINE + chr19:53942248-53942539 chr19 53942248 53942539 AluSg4 SINE + chr19:53942553-53942707 chr19 53942553 53942707 AluYh7 SINE - chr1:95394305-95394379 chr1 95394305 95394379 MamSINE1 SINE - chr19:53943287-53943593 chr19 53943287 53943593 AluJo SINE + chr19:53943920-53943943 chr19 53943920 53943943 (TTAA)n Simple_repeat + chr19:53944259-53944563 chr19 53944259 53944563 AluSx SINE + chr19:53944605-53944663 chr19 53944605 53944663 (ATTT)n Simple_repeat + chr1:95394621-95394740 chr1 95394621 95394740 L1MB4 LINE + chr19:53948220-53948397 chr19 53948220 53948397 AluSp SINE - chr19:53949046-53949302 chr19 53949046 53949302 L2 LINE + chr19:53950035-53950173 chr19 53950035 53950173 AluSz SINE - chr19:53950476-53950514 chr19 53950476 53950514 GA-rich Low_complexity + chr19:53952944-53953236 chr19 53952944 53953236 AluJr SINE - chr19:53953276-53953574 chr19 53953276 53953574 AluSc5 SINE + chr19:53955269-53955304 chr19 53955269 53955304 (TCCTG)n Simple_repeat + chr19:53955454-53955730 chr19 53955454 53955730 AluSx SINE + chr19:53960958-53961057 chr19 53960958 53961057 AluSz SINE + chr19:53961081-53961928 chr19 53961081 53961928 L1M3 LINE - chr19:53962746-53962937 chr19 53962746 53962937 HSMAR2 DNA + chr19:53962937-53962963 chr19 53962937 53962963 (TTTG)n Simple_repeat + chr19:53970244-53970353 chr19 53970244 53970353 L1M4 LINE + chr1:95397602-95397640 chr1 95397602 95397640 L2a LINE - chr1:95397660-95397715 chr1 95397660 95397715 MER94 DNA - chr1:95398383-95398464 chr1 95398383 95398464 L1M8 LINE - chr1:95410277-95410306 chr1 95410277 95410306 (GGAA)n Simple_repeat + chr1:95419716-95419761 chr1 95419716 95419761 (CA)n Simple_repeat + chr19:54449687-54449704 chr19 54449687 54449704 (TG)n Simple_repeat + chr19:54957058-54957106 chr19 54957058 54957106 MLT1A0 LTR - chr19:55551997-55552212 chr19 55551997 55552212 MER4-int LTR + chr19:55552719-55552814 chr19 55552719 55552814 MER20 DNA + chr19:55553508-55553528 chr19 55553508 55553528 (A)n Simple_repeat + chr19:55553748-55553845 chr19 55553748 55553845 AluSx3 SINE - chr19:55554012-55554127 chr19 55554012 55554127 MLT1F2 LTR + chr19:55554124-55554398 chr19 55554124 55554398 MLT1F2 LTR - chr19:55554487-55554768 chr19 55554487 55554768 AluJo SINE + chr19:55555028-55555084 chr19 55555028 55555084 MER20 DNA - chr19:55555097-55555187 chr19 55555097 55555187 MER96B DNA + chr19:55823901-55823945 chr19 55823901 55823945 (A)n Simple_repeat + chr19:56881395-56881967 chr19 56881395 56881967 L1ME2z LINE - chr19:56881736-56881951 chr19 56881736 56881951 Tigger4a DNA - chr19:56881988-56882178 chr19 56881988 56882178 AluJo SINE + chr19:56882234-56882371 chr19 56882234 56882371 L1ME3A LINE + chr19:56883665-56883795 chr19 56883665 56883795 MLT1G LTR - chr19:56883981-56884105 chr19 56883981 56884105 MLT1H LTR - chr19:56885408-56886610 chr19 56885408 56886610 MER68 LTR - chr19:56885491-56886146 chr19 56885491 56886146 MER77 LTR - chr19:56905902-56905980 chr19 56905902 56905980 MIR SINE + chr19:56908183-56908251 chr19 56908183 56908251 MIRb SINE + chr19:56908283-56908351 chr19 56908283 56908351 L1MD LINE + chr19:56910099-56910210 chr19 56910099 56910210 MER83 LTR + chr19:56989921-56989994 chr19 56989921 56989994 MER58B DNA + chr19:56990065-56990160 chr19 56990065 56990160 MER58B DNA + chr19:56990220-56990245 chr19 56990220 56990245 (TGAT)n Simple_repeat + chr19:56991730-56991835 chr19 56991730 56991835 L2a LINE - chr19:56993196-56993334 chr19 56993196 56993334 AluSq SINE - chr19:56997202-56997325 chr19 56997202 56997325 MER85 DNA + chr19:56999373-56999409 chr19 56999373 56999409 (AGTCATG)n Simple_repeat + chr19:57002746-57002792 chr19 57002746 57002792 L2a LINE - chr19:57004778-57004998 chr19 57004778 57004998 Helitron3Na_Mam RC + chr19:57005756-57005861 chr19 57005756 57005861 L2 LINE + chr19:57724990-57730218 chr19 57724990 57730218 L1MDa LINE - chr19:57725704-57726019 chr19 57725704 57726019 AluJb SINE - chr19:57728783-57729080 chr19 57728783 57729080 AluSg7 SINE - chr19:57729152-57729413 chr19 57729152 57729413 AluSg SINE - chr19:57730463-57730539 chr19 57730463 57730539 Alu SINE + chr19:57733872-57733891 chr19 57733872 57733891 (TC)n Simple_repeat + chr19:57733890-57733923 chr19 57733890 57733923 (TA)n Simple_repeat + chr19:57766620-57771214 chr19 57766620 57771214 L1MDa LINE - chr19:57769066-57769374 chr19 57769066 57769374 AluSq SINE - chr19:57769375-57769670 chr19 57769375 57769670 AluSx1 SINE - chr19:57769670-57769753 chr19 57769670 57769753 L1MD LINE - chr19:57770860-57770888 chr19 57770860 57770888 (TTTGT)n Simple_repeat + chr19:57770888-57771173 chr19 57770888 57771173 AluY SINE - chr19:57772254-57772468 chr19 57772254 57772468 MIR SINE - chr19:57773083-57773584 chr19 57773083 57773584 MER68 LTR - chr19:57805527-57805658 chr19 57805527 57805658 FLAM_A SINE - chr19:57806232-57806310 chr19 57806232 57806310 LTR23 LTR - chr19:57806321-57806487 chr19 57806321 57806487 AluJb SINE - chr19:57806487-57814941 chr19 57806487 57814941 L1M2a LINE - chr19:57807483-57807783 chr19 57807483 57807783 AluY SINE - chr19:57808673-57809027 chr19 57808673 57809027 AluJr SINE - chr19:57808871-57808909 chr19 57808871 57808909 (T)n Simple_repeat + chr19:57809722-57809759 chr19 57809722 57809759 (A)n Simple_repeat + chr19:57809835-57810135 chr19 57809835 57810135 AluSx SINE - chr19:57810578-57810881 chr19 57810578 57810881 AluSz SINE - chr19:57810881-57811249 chr19 57810881 57811249 L1M2 LINE - chr19:57811275-57811583 chr19 57811275 57811583 AluSx3 SINE - chr19:57811615-57811926 chr19 57811615 57811926 AluSq2 SINE - chr19:57812288-57812594 chr19 57812288 57812594 AluSz SINE - chr19:57814945-57815818 chr19 57814945 57815818 L1M4 LINE - chr19:57815284-57815584 chr19 57815284 57815584 AluSq2 SINE - chr19:57815822-57815922 chr19 57815822 57815922 FLAM_C SINE - chr19:57816021-57817540 chr19 57816021 57817540 L1ME3 LINE + chr19:57816138-57816426 chr19 57816138 57816426 AluYm1 SINE + chr19:57816885-57817168 chr19 57816885 57817168 AluJo SINE - chr19:57817558-57817809 chr19 57817558 57817809 L1ME3D LINE - chr19:57818321-57818404 chr19 57818321 57818404 AluJr4 SINE + chr19:57818752-57818891 chr19 57818752 57818891 AluJr SINE + chr19:57819408-57819694 chr19 57819408 57819694 L1MEd LINE - chr19:57819694-57819859 chr19 57819694 57819859 MLT1J-int LTR + chr19:57842150-57842180 chr19 57842150 57842180 (TTAT)n Simple_repeat + chr19:58134754-58135676 chr19 58134754 58135676 MLT1F-int LTR + chr19:58135676-58136199 chr19 58135676 58136199 MER41G LTR + chr19:58273723-58273747 chr19 58273723 58273747 (T)n Simple_repeat + chr19:58432668-58432859 chr19 58432668 58432859 AluJr4 SINE - chr19:58807758-58808049 chr19 58807758 58808049 AluSg SINE - chr19:58808054-58808264 chr19 58808054 58808264 MER20 DNA + chr19:58808316-58808624 chr19 58808316 58808624 AluSz6 SINE + chr19:58808783-58809051 chr19 58808783 58809051 AluJr SINE - chr19:58809180-58810046 chr19 58809180 58810046 Charlie1a DNA + chr19:58809697-58809990 chr19 58809697 58809990 AluSz SINE - chr19:58810050-58810192 chr19 58810050 58810192 L1MC5 LINE - chr19:58810196-58810473 chr19 58810196 58810473 AluJb SINE - chr19:58811484-58812838 chr19 58811484 58812838 MIR SINE - chr19:58812449-58812736 chr19 58812449 58812736 L2 LINE + chr19:58813157-58813364 chr19 58813157 58813364 L1ME4b LINE + chr19:58813409-58814403 chr19 58813409 58814403 Tigger4a DNA - chr19:58813593-58813788 chr19 58813593 58813788 L1ME4a LINE - chr19:58814018-58814316 chr19 58814018 58814316 L1ME4b LINE + chr19:58814410-58814960 chr19 58814410 58814960 L1ME4b LINE + chr19:58814492-58814795 chr19 58814492 58814795 AluSp SINE + chr19:58815451-58829206 chr19 58815451 58829206 MER3 DNA - chr19:58816807-58816904 chr19 58816807 58816904 (AGTGGTG)n Simple_repeat + chr19:58817036-58826633 chr19 58817036 58826633 HERVK3-int LTR + chr19:58821622-58822614 chr19 58821622 58822614 LTR13 LTR - chr19:58824644-58824956 chr19 58824644 58824956 AluSg7 SINE - chr19:58825710-58826016 chr19 58825710 58826016 AluY SINE + chr19:58826692-58827054 chr19 58826692 58827054 L1MB7 LINE - chr19:58828222-58828319 chr19 58828222 58828319 MIRb SINE - chr19:58829010-58829065 chr19 58829010 58829065 MER3 DNA + chr19:58830035-58830215 chr19 58830035 58830215 MIR SINE - chr19:58832314-58832346 chr19 58832314 58832346 (GTTTTTTT)n Simple_repeat + chr19:58832346-58832623 chr19 58832346 58832623 AluSg4 SINE - chr19:58832853-58832995 chr19 58832853 58832995 MIRb SINE - chr19:58834089-58834143 chr19 58834089 58834143 LTR25 LTR - chr19:58836240-58836372 chr19 58836240 58836372 AluJr SINE + chr19:64727-64979 chr19 64727 64979 MIR SINE - chr19:65411-66056 chr19 65411 66056 L2b LINE + chr19:65679-65805 chr19 65679 65805 MIR SINE + chr19:67968-68020 chr19 67968 68020 MIR1_Amn SINE + chr19:68190-68745 chr19 68190 68745 L2c LINE - chr19:69440-69622 chr19 69440 69622 MIRc SINE - chr19:69770-69905 chr19 69770 69905 MIRb SINE - chr1:97144338-97144366 chr1 97144338 97144366 (T)n Simple_repeat + chr19:8010072-8010103 chr19 8010072 8010103 (CACTA)n Simple_repeat + chr19:8079563-8079597 chr19 8079563 8079597 (T)n Simple_repeat + chr19:8373791-8373822 chr19 8373791 8373822 (AATT)n Simple_repeat + chr19:8375938-8376029 chr19 8375938 8376029 L2c LINE + chr19:8454695-8454752 chr19 8454695 8454752 MIR1_Amn SINE - chr19:893483-893585 chr19 893483 893585 U6 snRNA + chr19:9576386-9576690 chr19 9576386 9576690 AluSx SINE + chr19:9576740-9577045 chr19 9576740 9577045 AluSx SINE + chr19:9633849-9634248 chr19 9633849 9634248 MLT1B LTR - chr19:9634265-9634591 chr19 9634265 9634591 MER1B DNA - chr19:9635175-9635484 chr19 9635175 9635484 AluSp SINE + chr19:9636462-9636672 chr19 9636462 9636672 AluSz6 SINE - chr19:9636672-9637805 chr19 9636672 9637805 L1MCa LINE + chr19:9638369-9638653 chr19 9638369 9638653 MLT1B LTR - chr19:9668650-9672625 chr19 9668650 9672625 L1MC4 LINE + chr19:9671018-9671525 chr19 9671018 9671525 L1MB1 LINE - chr19:9672280-9672596 chr19 9672280 9672596 AluJr SINE + chr19:9756740-9757044 chr19 9756740 9757044 AluSp SINE - chr19:9757761-9758055 chr19 9757761 9758055 AluSc SINE - chr19:9758076-9758205 chr19 9758076 9758205 AluJr SINE - chr19:9758246-9758542 chr19 9758246 9758542 AluSq2 SINE + chr19:9758592-9758720 chr19 9758592 9758720 AluJo SINE - chr19:9758889-9758973 chr19 9758889 9758973 L1M5 LINE + chr19:9758985-9759278 chr19 9758985 9759278 AluSz SINE - chr20:10604483-10604564 chr20 10604483 10604564 MER5A DNA + chr20:10604577-10604620 chr20 10604577 10604620 MER5A DNA + chr20:11514742-11514766 chr20 11514742 11514766 (GAA)n Simple_repeat + chr20:12742341-12742534 chr20 12742341 12742534 MIRb SINE - chr20:12742570-12742717 chr20 12742570 12742717 Charlie15a DNA - chr20:12743257-12743280 chr20 12743257 12743280 (A)n Simple_repeat + chr20:1310085-1310180 chr20 1310085 1310180 L1M5 LINE + chr20:1310621-1310749 chr20 1310621 1310749 L1ME4b LINE + chr20:1311078-1311260 chr20 1311078 1311260 MIRb SINE - chr20:1313225-1313366 chr20 1313225 1313366 MIR SINE + chr20:1313420-1313469 chr20 1313420 1313469 MLT1K LTR - chr20:1313815-1313900 chr20 1313815 1313900 MLT1J LTR - chr20:1313932-1313995 chr20 1313932 1313995 MIR3 SINE + chr20:1314732-1315018 chr20 1314732 1315018 MLT1A0 LTR + chr20:1319033-1319150 chr20 1319033 1319150 MIR1_Amn SINE + chr20:1322125-1322229 chr20 1322125 1322229 MIRc SINE + chr20:1322791-1322816 chr20 1322791 1322816 (CA)n Simple_repeat + chr20:1323482-1323534 chr20 1323482 1323534 L2a LINE + chr20:1339203-1339293 chr20 1339203 1339293 AluSg SINE + chr20:1341689-1341864 chr20 1341689 1341864 Charlie1a DNA + chr20:1342853-1342883 chr20 1342853 1342883 (A)n Simple_repeat + chr20:1343628-1343745 chr20 1343628 1343745 AluJb SINE + chr20:1345987-1346105 chr20 1345987 1346105 MLT1L LTR + chr20:18548679-18548911 chr20 18548679 18548911 L1MB8 LINE + chr20:18549004-18549138 chr20 18549004 18549138 FLAM_C SINE + chr20:18549244-18549422 chr20 18549244 18549422 AluSg4 SINE - chr20:18549423-18549722 chr20 18549423 18549722 AluSx SINE - chr20:20014806-20014832 chr20 20014806 20014832 (A)n Simple_repeat + chr20:21108364-21108489 chr20 21108364 21108489 MIR3 SINE + chr20:21109751-21109964 chr20 21109751 21109964 L3b LINE + chr20:21112246-21112409 chr20 21112246 21112409 L2a LINE + chr20:21112902-21113221 chr20 21112902 21113221 AluSz SINE - chr20:21114326-21114639 chr20 21114326 21114639 LTR16E2 LTR - chr20:21114968-21115141 chr20 21114968 21115141 MIR SINE + chr20:21115301-21115607 chr20 21115301 21115607 AluSx SINE - chr20:21117240-21117354 chr20 21117240 21117354 FLAM_A SINE - chr20:21117301-21117365 chr20 21117301 21117365 SVA_B Retroposon + chr20:21118430-21118710 chr20 21118430 21118710 AluJr SINE - chr20:21119020-21119196 chr20 21119020 21119196 MER3 DNA + chr20:21119591-21119713 chr20 21119591 21119713 5S rRNA - chr20:21121339-21121657 chr20 21121339 21121657 AluJr4 SINE + chr20:21121836-21122019 chr20 21121836 21122019 LTR16C LTR - chr20:21122439-21122465 chr20 21122439 21122465 (AC)n Simple_repeat + chr20:21122465-21122505 chr20 21122465 21122505 (TC)n Simple_repeat + chr20:21122720-21122765 chr20 21122720 21122765 (CA)n Simple_repeat + chr20:21122774-21123040 chr20 21122774 21123040 L2c LINE + chr20:21123236-21123431 chr20 21123236 21123431 AluJb SINE + chr20:21123431-21123463 chr20 21123431 21123463 (AAAT)n Simple_repeat + chr20:21125906-21125944 chr20 21125906 21125944 (TA)n Simple_repeat + chr20:21128602-21128636 chr20 21128602 21128636 (TG)n Simple_repeat + chr20:21129612-21129846 chr20 21129612 21129846 MIR SINE - chr20:21130498-21130912 chr20 21130498 21130912 LTR16C LTR - chr20:21131655-21131819 chr20 21131655 21131819 MIR SINE - chr20:21132374-21132586 chr20 21132374 21132586 L1ME4c LINE + chr20:21133669-21133772 chr20 21133669 21133772 MIRc SINE + chr20:21134231-21134599 chr20 21134231 21134599 MLT1B LTR - chr20:21136434-21136720 chr20 21136434 21136720 L1ME4c LINE - chr20:21136711-21136966 chr20 21136711 21136966 L1MD3 LINE - chr20:21137038-21137246 chr20 21137038 21137246 Tigger3b DNA + chr20:21137250-21137618 chr20 21137250 21137618 L1MC4 LINE + chr20:21137618-21137746 chr20 21137618 21137746 FLAM_A SINE + chr20:21137849-21138189 chr20 21137849 21138189 Charlie20a DNA + chr20:21138716-21138801 chr20 21138716 21138801 L1ME4c LINE + chr20:21138999-21139199 chr20 21138999 21139199 L1ME4b LINE + chr20:21139443-21139599 chr20 21139443 21139599 AluJb SINE - chr20:21139604-21139659 chr20 21139604 21139659 (ATAT)n Simple_repeat + chr20:21139659-21139917 chr20 21139659 21139917 AluSq2 SINE - chr20:21140666-21141076 chr20 21140666 21141076 MER54A LTR + chr20:21141302-21141662 chr20 21141302 21141662 MLT1A0 LTR + chr20:21141989-21142271 chr20 21141989 21142271 AluSx1 SINE - chr20:21143950-21144004 chr20 21143950 21144004 (TTTC)n Simple_repeat + chr20:21144566-21144652 chr20 21144566 21144652 MIR3 SINE - chr20:21146478-21146602 chr20 21146478 21146602 AluSg4 SINE - chr20:21147329-21147532 chr20 21147329 21147532 AluSz SINE - chr20:21148199-21148493 chr20 21148199 21148493 AluSq2 SINE - chr20:21152086-21152384 chr20 21152086 21152384 AluSx SINE - chr20:21152962-21153249 chr20 21152962 21153249 AluJb SINE + chr20:21153249-21153390 chr20 21153249 21153390 L2a LINE - chr20:21153935-21154243 chr20 21153935 21154243 AluSx1 SINE + chr20:21154333-21154525 chr20 21154333 21154525 L2-1_AMi LINE - chr20:21154725-21154824 chr20 21154725 21154824 MIR SINE - chr20:21154837-21154994 chr20 21154837 21154994 MIR SINE - chr20:21155151-21155175 chr20 21155151 21155175 (AGAAA)n Simple_repeat + chr20:21156367-21156663 chr20 21156367 21156663 AluSz SINE + chr20:21156667-21156952 chr20 21156667 21156952 AluSz6 SINE + chr20:21161376-21161678 chr20 21161376 21161678 MLT1G LTR + chr20:21162700-21162910 chr20 21162700 21162910 MLT1A LTR + chr20:21163153-21163459 chr20 21163153 21163459 AluSx SINE + chr20:21163489-21163525 chr20 21163489 21163525 (TC)n Simple_repeat + chr20:21163858-21163906 chr20 21163858 21163906 L1ME4a LINE + chr20:21163923-21164054 chr20 21163923 21164054 L1MB8 LINE + chr20:21165416-21165698 chr20 21165416 21165698 AluJr SINE + chr20:21165702-21165738 chr20 21165702 21165738 (TG)n Simple_repeat + chr20:21166354-21166516 chr20 21166354 21166516 AluSx3 SINE - chr20:21167164-21167263 chr20 21167164 21167263 Charlie22a DNA - chr20:21167613-21167832 chr20 21167613 21167832 Tigger4a DNA + chr20:21169650-21169773 chr20 21169650 21169773 FLAM_C SINE - chr20:21172919-21172941 chr20 21172919 21172941 (T)n Simple_repeat + chr20:21172957-21173088 chr20 21172957 21173088 FLAM_A SINE - chr20:21175348-21175485 chr20 21175348 21175485 FLAM_C SINE + chr20:21175570-21175813 chr20 21175570 21175813 L2d LINE - chr20:21175952-21176077 chr20 21175952 21176077 Zaphod3 DNA + chr20:21176144-21176235 chr20 21176144 21176235 L2d2 LINE - chr20:21176250-21176452 chr20 21176250 21176452 MER102b DNA + chr20:21176804-21177051 chr20 21176804 21177051 L2d2 LINE + chr20:21181540-21181835 chr20 21181540 21181835 AluJb SINE + chr20:21183274-21183469 chr20 21183274 21183469 L1ME2z LINE - chr20:21185569-21185634 chr20 21185569 21185634 MER5B DNA + chr20:21185634-21185750 chr20 21185634 21185750 AluJb SINE + chr20:21185802-21185926 chr20 21185802 21185926 MER5B DNA + chr20:21188686-21188881 chr20 21188686 21188881 Tigger16a DNA + chr20:21197314-21197631 chr20 21197314 21197631 Tigger19b DNA - chr20:21198107-21198141 chr20 21198107 21198141 (TGTTTG)n Simple_repeat + chr20:21199147-21199332 chr20 21199147 21199332 MER103C DNA - chr20:21199753-21199815 chr20 21199753 21199815 L3 LINE + chr20:21199951-21200255 chr20 21199951 21200255 AluJb SINE - chr20:21200691-21200845 chr20 21200691 21200845 (TA)n Simple_repeat + chr20:21200915-21201100 chr20 21200915 21201100 MIRb SINE - chr20:21201111-21201417 chr20 21201111 21201417 AluSz6 SINE - chr20:21201924-21201981 chr20 21201924 21201981 L2a LINE + chr20:21202923-21203028 chr20 21202923 21203028 MER5B DNA + chr20:21204303-21204615 chr20 21204303 21204615 AluSx1 SINE - chr20:21204618-21204916 chr20 21204618 21204916 AluSp SINE - chr20:21205413-21205511 chr20 21205413 21205511 UCON5 Unknown - chr20:21206561-21206707 chr20 21206561 21206707 L3b LINE - chr20:21206770-21206964 chr20 21206770 21206964 MER102a DNA + chr20:21207396-21207531 chr20 21207396 21207531 Charlie30a DNA + chr20:21208411-21208530 chr20 21208411 21208530 MER112 DNA - chr20:21210191-21210231 chr20 21210191 21210231 (TTATT)n Simple_repeat + chr20:21210232-21210511 chr20 21210232 21210511 AluJb SINE - chr20:21210709-21210832 chr20 21210709 21210832 L1MC5a LINE - chr20:21210832-21211122 chr20 21210832 21211122 AluJr SINE + chr20:21211477-21211547 chr20 21211477 21211547 MIR3 SINE - chr20:21211688-21211981 chr20 21211688 21211981 AluSx1 SINE + chr20:21215379-21215432 chr20 21215379 21215432 GA-rich Low_complexity + chr20:21218469-21218765 chr20 21218469 21218765 AluSx3 SINE - chr20:21218972-21219055 chr20 21218972 21219055 (GT)n Simple_repeat + chr20:21219750-21219861 chr20 21219750 21219861 MIRb SINE - chr20:21220014-21220144 chr20 21220014 21220144 MIR3 SINE + chr20:21220557-21220635 chr20 21220557 21220635 L1ME2z LINE + chr20:21220733-21220770 chr20 21220733 21220770 (ATTA)n Simple_repeat + chr20:21220770-21221053 chr20 21220770 21221053 AluSx SINE - chr20:21222580-21222629 chr20 21222580 21222629 (AATATTG)n Simple_repeat + chr20:21223682-21223703 chr20 21223682 21223703 (GT)n Simple_repeat + chr20:21225466-21225654 chr20 21225466 21225654 L2c LINE + chr20:21225967-21226182 chr20 21225967 21226182 MIRb SINE + chr20:21226319-21226679 chr20 21226319 21226679 LTR16C LTR + chr20:2632633-2632669 chr20 2632633 2632669 A-rich Low_complexity + chr20:30774875-30775163 chr20 30774875 30775163 AluJr SINE + chr20:30775169-30775283 chr20 30775169 30775283 FLAM_C SINE + chr20:31438889-31439192 chr20 31438889 31439192 AluJb SINE - chr20:31439762-31439859 chr20 31439762 31439859 MER5A DNA - chr20:31439927-31440140 chr20 31439927 31440140 MIRc SINE + chr20:31443682-31443714 chr20 31443682 31443714 (T)n Simple_repeat + chr20:31444158-31444392 chr20 31444158 31444392 AluJr SINE - chr20:3156843-3156871 chr20 3156843 3156871 (TTTGT)n Simple_repeat + chr20:32670031-32670089 chr20 32670031 32670089 MIRb SINE + chr20:32862015-32862046 chr20 32862015 32862046 L2a LINE - chr20:32863992-32864124 chr20 32863992 32864124 MER5A DNA + chr20:32865011-32865198 chr20 32865011 32865198 MIR3 SINE + chr20:32867292-32867394 chr20 32867292 32867394 Chap1a_Mam DNA + chr20:32867394-32867463 chr20 32867394 32867463 MamRep137 DNA + chr20:34146714-34146740 chr20 34146714 34146740 (AGC)n Simple_repeat + chr20:34634464-34634507 chr20 34634464 34634507 (CCCTTC)n Simple_repeat + chr20:35184814-35184876 chr20 35184814 35184876 Tigger4a DNA + chr20:36130524-36130705 chr20 36130524 36130705 MIRb SINE + chr20:36130901-36131020 chr20 36130901 36131020 L2c LINE - chr20:36136263-36136305 chr20 36136263 36136305 (GT)n Simple_repeat + chr20:36137699-36137821 chr20 36137699 36137821 MIR3 SINE - chr20:36139515-36139555 chr20 36139515 36139555 (TCTTC)n Simple_repeat + chr20:36140348-36140382 chr20 36140348 36140382 A-rich Low_complexity + chr20:36141594-36141717 chr20 36141594 36141717 MIR3 SINE - chr20:36145152-36145253 chr20 36145152 36145253 MIRc SINE - chr20:37051226-37052516 chr20 37051226 37052516 L1MA9 LINE + chr20:37051760-37052090 chr20 37051760 37052090 AluJo SINE + chr20:37053204-37053394 chr20 37053204 37053394 L2b LINE - chr20:37053579-37053803 chr20 37053579 37053803 LTR32 LTR + chr20:37054136-37054314 chr20 37054136 37054314 MER5A DNA - chr20:37055632-37055676 chr20 37055632 37055676 (AC)n Simple_repeat + chr20:37056366-37056791 chr20 37056366 37056791 MER68B LTR + chr20:37057711-37057919 chr20 37057711 37057919 AluJb SINE - chr20:37058677-37058988 chr20 37058677 37058988 AluSx1 SINE + chr20:37058990-37059289 chr20 37058990 37059289 AluSx1 SINE + chr20:37060285-37060327 chr20 37060285 37060327 MIR SINE - chr20:37061343-37061592 chr20 37061343 37061592 AluSz6 SINE - chr20:37061616-37061918 chr20 37061616 37061918 AluSz6 SINE - chr20:37062010-37062253 chr20 37062010 37062253 AluJr SINE + chr20:37062828-37062932 chr20 37062828 37062932 L2c LINE - chr20:37075876-37076020 chr20 37075876 37076020 MIRb SINE - chr20:37077193-37077232 chr20 37077193 37077232 MIRb SINE - chr20:37078381-37078487 chr20 37078381 37078487 L2d LINE - chr20:3849653-3850234 chr20 3849653 3850234 AluJr4 SINE - chr20:3849815-3850119 chr20 3849815 3850119 AluY SINE - chr20:3850246-3850549 chr20 3850246 3850549 AluSx1 SINE - chr20:3851164-3851323 chr20 3851164 3851323 FLAM_C SINE + chr20:3851533-3851827 chr20 3851533 3851827 AluSx1 SINE - chr20:3851832-3852026 chr20 3851832 3852026 LTR83 LTR - chr20:3852521-3852656 chr20 3852521 3852656 MIR SINE - chr20:3852804-3853088 chr20 3852804 3853088 AluJr SINE + chr20:3853456-3853585 chr20 3853456 3853585 L2a LINE - chr20:3853736-3854999 chr20 3853736 3854999 L1ME3A LINE + chr20:3853808-3854475 chr20 3853808 3854475 MLT1A0 LTR + chr20:3853897-3854196 chr20 3853897 3854196 AluSz SINE + chr20:3855622-3855701 chr20 3855622 3855701 L2d LINE + chr20:42092378-42092535 chr20 42092378 42092535 MIR SINE + chr20:42824623-42824694 chr20 42824623 42824694 Helitron3Na_Mam RC + chr20:44514014-44514117 chr20 44514014 44514117 MIRb SINE + chr20:44516380-44516566 chr20 44516380 44516566 MIRc SINE + chr20:44516936-44516996 chr20 44516936 44516996 MER5B DNA + chr20:44560814-44560980 chr20 44560814 44560980 MIRc SINE + chr20:44562074-44562291 chr20 44562074 44562291 MIR SINE - chr20:45311200-45311283 chr20 45311200 45311283 MIR SINE + chr20:458527-458564 chr20 458527 458564 (AAAAC)n Simple_repeat + chr20:45987965-45987989 chr20 45987965 45987989 (CCTC)n Simple_repeat + chr20:45988401-45988516 chr20 45988401 45988516 MIRc SINE - chr20:45988631-45988721 chr20 45988631 45988721 AluJb SINE - chr20:45988753-45988837 chr20 45988753 45988837 MIR3 SINE - chr20:45988926-45989135 chr20 45988926 45989135 MER20 DNA + chr20:45990098-45990301 chr20 45990098 45990301 MER20 DNA + chr20:45990305-45990413 chr20 45990305 45990413 L2b LINE + chr20:45990485-45990515 chr20 45990485 45990515 (AC)n Simple_repeat + chr20:45990546-45990863 chr20 45990546 45990863 AluSc8 SINE - chr20:45990865-45991191 chr20 45990865 45991191 AluSz SINE - chr20:45991717-45991951 chr20 45991717 45991951 MIR SINE + chr20:45991960-45992392 chr20 45991960 45992392 MIR SINE - chr20:45991973-45992284 chr20 45991973 45992284 AluSz SINE - chr20:45992410-45992706 chr20 45992410 45992706 AluSx SINE - chr20:45993002-45993903 chr20 45993002 45993903 AluJr SINE - chr20:45993487-45993789 chr20 45993487 45993789 AluSp SINE + chr20:45993983-45994085 chr20 45993983 45994085 L2a LINE - chr20:45994738-45994881 chr20 45994738 45994881 AluSx3 SINE + chr20:45994883-45994919 chr20 45994883 45994919 (AAT)n Simple_repeat + chr20:45995754-45995897 chr20 45995754 45995897 MIR SINE + chr20:45995908-45996159 chr20 45995908 45996159 AluSx1 SINE + chr20:45997313-45997469 chr20 45997313 45997469 MIR SINE - chr20:47714859-47714901 chr20 47714859 47714901 (TTG)n Simple_repeat + chr20:47895879-47896183 chr20 47895879 47896183 AluSx SINE + chr20:47897647-47900663 chr20 47897647 47900663 HERVIP10B3-int LTR - chr20:47898670-47898907 chr20 47898670 47898907 AluSg SINE - chr20:47900665-47904036 chr20 47900665 47904036 HERVIP10B3-int LTR - chr20:47901124-47901428 chr20 47901124 47901428 AluSg4 SINE - chr20:47904947-47905141 chr20 47904947 47905141 AluJo SINE - chr20:47906704-47906721 chr20 47906704 47906721 (T)n Simple_repeat + chr20:50399089-50399113 chr20 50399089 50399113 (A)n Simple_repeat + chr20:50400280-50400567 chr20 50400280 50400567 AluSg SINE + chr20:50863438-50863605 chr20 50863438 50863605 MER21B LTR - chr20:54979686-54980020 chr20 54979686 54980020 AluY SINE - chr20:54980244-54980278 chr20 54980244 54980278 (GTTTT)n Simple_repeat + chr20:54980278-54980564 chr20 54980278 54980564 AluSp SINE - chr20:57396940-57396969 chr20 57396940 57396969 (CTCCT)n Simple_repeat + chr20:57406752-57406782 chr20 57406752 57406782 (TTCA)n Simple_repeat + chr20:57410421-57410503 chr20 57410421 57410503 L2d2 LINE + chr20:57410748-57410844 chr20 57410748 57410844 L2d2 LINE + chr20:57414112-57414158 chr20 57414112 57414158 (CCAGCT)n Simple_repeat + chr20:5978271-5978524 chr20 5978271 5978524 AluJo SINE - chr20:62494676-62494810 chr20 62494676 62494810 L2b LINE - chr2:10075150-10075762 chr2 10075150 10075762 L2a LINE - chr2:10075839-10076159 chr2 10075839 10076159 AluJb SINE - chr2:10076731-10076865 chr2 10076731 10076865 AluJr SINE - chr2:10076865-10077128 chr2 10076865 10077128 L1ME1 LINE + chr2:101193546-101193848 chr2 101193546 101193848 AluSz SINE - chr2:101887822-101888062 chr2 101887822 101888062 AluJr SINE + chr2:101888062-101888080 chr2 101888062 101888080 (A)n Simple_repeat + chr2:101889662-101889729 chr2 101889662 101889729 (GACAGCAG)n Simple_repeat + chr2:10261776-10261915 chr2 10261776 10261915 FLAM_C SINE - chr2:10275348-10275421 chr2 10275348 10275421 7SLRNA srpRNA + chr2:103332195-103332237 chr2 103332195 103332237 MADE2 DNA + chr2:105761018-105761062 chr2 105761018 105761062 (CCA)n Simple_repeat + chr2:105952441-105952547 chr2 105952441 105952547 MIR3 SINE + chr2:110969292-110969412 chr2 110969292 110969412 MIRc SINE - chr2:111394871-111394904 chr2 111394871 111394904 GA-rich Low_complexity + chr2:111395162-111395198 chr2 111395162 111395198 (GT)n Simple_repeat + chr2:111997641-111997675 chr2 111997641 111997675 (TCATTA)n Simple_repeat + chr2:112002264-112002307 chr2 112002264 112002307 (AC)n Simple_repeat + chr2:112004003-112004027 chr2 112004003 112004027 (TC)n Simple_repeat + chr2:112010052-112010088 chr2 112010052 112010088 A-rich Low_complexity + chr2:112018824-112018855 chr2 112018824 112018855 (AAATAA)n Simple_repeat + chr2:112025730-112025780 chr2 112025730 112025780 (CCTT)n Simple_repeat + chr2:112027963-112028001 chr2 112027963 112028001 (TCCCT)n Simple_repeat + chr2:112046067-112046092 chr2 112046067 112046092 (CCCT)n Simple_repeat + chr2:112046764-112046783 chr2 112046764 112046783 (CTC)n Simple_repeat + chr2:112053454-112053476 chr2 112053454 112053476 (T)n Simple_repeat + chr2:112062871-112062905 chr2 112062871 112062905 (AG)n Simple_repeat + chr2:112065396-112065424 chr2 112065396 112065424 (ATTA)n Simple_repeat + chr2:112066215-112066249 chr2 112066215 112066249 (GT)n Simple_repeat + chr2:112085733-112085781 chr2 112085733 112085781 GA-rich Low_complexity + chr2:112092156-112092179 chr2 112092156 112092179 (A)n Simple_repeat + chr2:112093673-112093731 chr2 112093673 112093731 AluJb SINE - chr2:112096632-112096726 chr2 112096632 112096726 MIR1_Amn SINE + chr2:112097246-112097273 chr2 112097246 112097273 (GCA)n Simple_repeat + chr2:112099790-112099858 chr2 112099790 112099858 MER21A LTR + chr2:112101380-112101415 chr2 112101380 112101415 (TGC)n Simple_repeat + chr2:112103845-112103880 chr2 112103845 112103880 A-rich Low_complexity + chr2:112104923-112105019 chr2 112104923 112105019 MIR1_Amn SINE + chr2:112105197-112105240 chr2 112105197 112105240 MIR3 SINE + chr2:112113858-112113904 chr2 112113858 112113904 (GA)n Simple_repeat + chr2:112127525-112127592 chr2 112127525 112127592 MIR3 SINE - chr2:112144019-112144042 chr2 112144019 112144042 (AT)n Simple_repeat + chr2:112149219-112149253 chr2 112149219 112149253 (TG)n Simple_repeat + chr2:112152754-112152899 chr2 112152754 112152899 AluJb SINE - chr2:112154870-112154901 chr2 112154870 112154901 (ATC)n Simple_repeat + chr2:112159774-112159843 chr2 112159774 112159843 X6B_LINE LINE - chr2:112164841-112164889 chr2 112164841 112164889 L1PA3 LINE - chr2:112165197-112165237 chr2 112165197 112165237 (CCTCC)n Simple_repeat + chr2:112166099-112166133 chr2 112166099 112166133 (CATT)n Simple_repeat + chr2:112169615-112169665 chr2 112169615 112169665 MIRb SINE - chr2:112170949-112170988 chr2 112170949 112170988 (AC)n Simple_repeat + chr2:112173008-112173046 chr2 112173008 112173046 (GT)n Simple_repeat + chr2:112175769-112175788 chr2 112175769 112175788 (AC)n Simple_repeat + chr2:112176655-112176695 chr2 112176655 112176695 (TTCCTC)n Simple_repeat + chr2:112177933-112177976 chr2 112177933 112177976 (TTTG)n Simple_repeat + chr2:112179063-112179100 chr2 112179063 112179100 (ACAT)n Simple_repeat + chr2:112180538-112180564 chr2 112180538 112180564 (TATT)n Simple_repeat + chr2:112184463-112184507 chr2 112184463 112184507 MER3 DNA + chr2:112189264-112189430 chr2 112189264 112189430 MIR3 SINE - chr2:112193130-112193163 chr2 112193130 112193163 GA-rich Low_complexity + chr2:112194028-112194072 chr2 112194028 112194072 A-rich Low_complexity + chr2:112197750-112197778 chr2 112197750 112197778 (TAAA)n Simple_repeat + chr2:112201717-112201786 chr2 112201717 112201786 MER2B DNA + chr2:112202245-112202378 chr2 112202245 112202378 L2b LINE + chr2:112203087-112203128 chr2 112203087 112203128 (ATT)n Simple_repeat + chr2:112203130-112203244 chr2 112203130 112203244 MIRc SINE - chr2:112205850-112205986 chr2 112205850 112205986 X17_LINE LINE - chr2:112211878-112211897 chr2 112211878 112211897 (AC)n Simple_repeat + chr2:112216793-112216817 chr2 112216793 112216817 (TCAT)n Simple_repeat + chr2:112217206-112217247 chr2 112217206 112217247 MIR3 SINE - chr2:112217695-112218184 chr2 112217695 112218184 MLT1B LTR - chr2:112217914-112218007 chr2 112217914 112218007 L1PA5 LINE - chr2:112218238-112218293 chr2 112218238 112218293 L2c LINE - chr2:112223153-112223242 chr2 112223153 112223242 MIRc SINE - chr2:112224502-112224537 chr2 112224502 112224537 MER57C2 LTR - chr2:112225337-112225363 chr2 112225337 112225363 (G)n Simple_repeat + chr2:112225363-112225373 chr2 112225363 112225373 (GTGG)n Simple_repeat + chr2:112225560-112225870 chr2 112225560 112225870 AluY SINE - chr2:112226695-112226741 chr2 112226695 112226741 A-rich Low_complexity + chr2:112226779-112226820 chr2 112226779 112226820 (TG)n Simple_repeat + chr2:112227679-112227833 chr2 112227679 112227833 MIRb SINE - chr2:112228026-112228336 chr2 112228026 112228336 AluSx SINE + chr2:112228336-112228376 chr2 112228336 112228376 (AT)n Simple_repeat + chr2:112231896-112231984 chr2 112231896 112231984 OldhAT1 DNA - chr2:112232430-112232477 chr2 112232430 112232477 (CA)n Simple_repeat + chr2:112232875-112232996 chr2 112232875 112232996 MER103C DNA - chr2:112234254-112234400 chr2 112234254 112234400 MER45A DNA - chr2:112234807-112234846 chr2 112234807 112234846 (GGCCT)n Simple_repeat + chr2:112235595-112235667 chr2 112235595 112235667 G-rich Low_complexity + chr2:112235949-112236003 chr2 112235949 112236003 (ATT)n Simple_repeat + chr2:112239655-112239765 chr2 112239655 112239765 L1ME4b LINE + chr2:112240125-112240249 chr2 112240125 112240249 MIRb SINE + chr2:112242979-112243074 chr2 112242979 112243074 MIRc SINE - chr2:112245223-112245389 chr2 112245223 112245389 MamGypLTR1b LTR + chr2:112247593-112247625 chr2 112247593 112247625 (CCT)n Simple_repeat + chr2:112247710-112247878 chr2 112247710 112247878 MLT1J LTR + chr2:112248811-112248966 chr2 112248811 112248966 Tigger14a DNA + chr2:112249365-112249411 chr2 112249365 112249411 (TGA)n Simple_repeat + chr2:112249661-112249767 chr2 112249661 112249767 MIR SINE - chr2:113337062-113337161 chr2 113337062 113337161 HY3 scRNA - chr2:113337659-113337688 chr2 113337659 113337688 (T)n Simple_repeat + chr2:113613868-113613884 chr2 113613868 113613884 (AT)n Simple_repeat + chr2:114342733-114342868 chr2 114342733 114342868 MIRb SINE + chr2:114343895-114344435 chr2 114343895 114344435 L2c LINE + chr2:114343956-114344227 chr2 114343956 114344227 AluSp SINE - chr2:114344605-114344657 chr2 114344605 114344657 MIR1_Amn SINE - chr2:114346569-114347193 chr2 114346569 114347193 L2b LINE - chr2:114346825-114346930 chr2 114346825 114346930 MIR SINE - chr2:114347677-114347892 chr2 114347677 114347892 MIR SINE + chr2:114369044-114370336 chr2 114369044 114370336 MER92-int LTR + chr2:114466938-114467021 chr2 114466938 114467021 MIR3 SINE - chr2:114467253-114467756 chr2 114467253 114467756 MER5A DNA + chr2:114467385-114467679 chr2 114467385 114467679 AluJo SINE - chr21:15756231-15756265 chr21 15756231 15756265 (AAAAAC)n Simple_repeat + chr2:11623566-11623596 chr2 11623566 11623596 (GT)n Simple_repeat + chr2:11623813-11623860 chr2 11623813 11623860 (GT)n Simple_repeat + chr2:11625363-11625388 chr2 11625363 11625388 (TTTAT)n Simple_repeat + chr2:11626681-11626729 chr2 11626681 11626729 Alu SINE + chr2:11627121-11627171 chr2 11627121 11627171 (ATTAT)n Simple_repeat + chr2:11628999-11629016 chr2 11628999 11629016 (A)n Simple_repeat + chr2:11648235-11648268 chr2 11648235 11648268 GA-rich Low_complexity + chr2:11656437-11656474 chr2 11656437 11656474 (GT)n Simple_repeat + chr2:11657295-11657338 chr2 11657295 11657338 (GCCCTCT)n Simple_repeat + chr2:11658867-11658893 chr2 11658867 11658893 (A)n Simple_repeat + chr2:11664157-11664206 chr2 11664157 11664206 (CA)n Simple_repeat + chr2:11671995-11672009 chr2 11671995 11672009 (TTA)n Simple_repeat + chr2:11673117-11673169 chr2 11673117 11673169 L2c LINE + chr21:18826990-18827077 chr21 18826990 18827077 AluSp SINE - chr21:18827103-18827177 chr21 18827103 18827177 tRNA-Gly-GGY tRNA - chr2:120975302-120975343 chr2 120975302 120975343 Charlie1b DNA - chr2:120978025-120978341 chr2 120978025 120978341 AluSp SINE + chr2:121493542-121493567 chr2 121493542 121493567 (GGC)n Simple_repeat + chr2:122408600-122408650 chr2 122408600 122408650 L2c LINE - chr2:122463509-122463534 chr2 122463509 122463534 (T)n Simple_repeat + chr2:122465717-122465758 chr2 122465717 122465758 (T)n Simple_repeat + chr2:122465758-122465778 chr2 122465758 122465778 (TTTA)n Simple_repeat + chr2:122466299-122466359 chr2 122466299 122466359 (TCA)n Simple_repeat + chr2:122472799-122472866 chr2 122472799 122472866 L1ME4b LINE + chr2:122474312-122474366 chr2 122474312 122474366 (TTAT)n Simple_repeat + chr2:122477277-122477338 chr2 122477277 122477338 MIR SINE + chr2:122479284-122479324 chr2 122479284 122479324 (AT)n Simple_repeat + chr2:122482738-122482892 chr2 122482738 122482892 FLAM_C SINE + chr21:26473444-26473683 chr21 26473444 26473683 7SK RNA + chr2:128051995-128052013 chr2 128051995 128052013 (GA)n Simple_repeat + chr2:128601249-128601927 chr2 128601249 128601927 MLT1A1 LTR + chr2:128601400-128601700 chr2 128601400 128601700 AluJr SINE + chr2:128602221-128602523 chr2 128602221 128602523 AluSq2 SINE - chr2:128602809-128602905 chr2 128602809 128602905 U6 snRNA + chr2:128602947-128603248 chr2 128602947 128603248 AluSp SINE - chr2:128603371-128603541 chr2 128603371 128603541 MIR SINE - chr2:131104496-131105482 chr2 131104496 131105482 L1MA9 LINE - chr2:131105082-131105416 chr2 131105082 131105416 MLT1A0 LTR + chr2:131185946-131186078 chr2 131185946 131186078 AluY SINE - chr2:132181026-132181062 chr2 132181026 132181062 (AG)n Simple_repeat + chr2:132251237-132251270 chr2 132251237 132251270 (AAAAC)n Simple_repeat + chr2:132254038-132254323 chr2 132254038 132254323 AluJo SINE + chr2:132254429-132254733 chr2 132254429 132254733 AluJr SINE + chr2:132255009-132255211 chr2 132255009 132255211 MIRc SINE + chr2:132255301-132255426 chr2 132255301 132255426 FLAM_A SINE + chr2:132255426-132255457 chr2 132255426 132255457 (TGAGAAG)n Simple_repeat + chr2:132256702-132256925 chr2 132256702 132256925 MER20 DNA + chr2:132257127-132257407 chr2 132257127 132257407 AluJr SINE + chr2:132260293-132260330 chr2 132260293 132260330 (CA)n Simple_repeat + chr2:132261001-132261273 chr2 132261001 132261273 AluSx1 SINE - chr2:132261481-132261566 chr2 132261481 132261566 SVA_B Retroposon + chr2:132262784-132262967 chr2 132262784 132262967 AluJb SINE + chr2:132263062-132263274 chr2 132263062 132263274 AluJb SINE - chr2:132263277-132263580 chr2 132263277 132263580 AluJr SINE - chr2:132264052-132264361 chr2 132264052 132264361 AluSx1 SINE + chr2:132265431-132265731 chr2 132265431 132265731 AluJr SINE - chr2:132265733-132266091 chr2 132265733 132266091 L1M4 LINE - chr2:132266701-132266740 chr2 132266701 132266740 (CCCCCT)n Simple_repeat + chr2:132268114-132268144 chr2 132268114 132268144 (CCTGC)n Simple_repeat + chr2:132270410-132270437 chr2 132270410 132270437 (AGGTG)n Simple_repeat + chr2:132270904-132271203 chr2 132270904 132271203 AluSz SINE - chr2:132271988-132272246 chr2 132271988 132272246 AluSx3 SINE + chr2:132272418-132272703 chr2 132272418 132272703 AluJr SINE - chr2:132273671-132273759 chr2 132273671 132273759 MIRc SINE + chr2:132457129-132457182 chr2 132457129 132457182 (TTTTATT)n Simple_repeat + chr2:132465943-132466024 chr2 132465943 132466024 (TAGA)n Simple_repeat + chr2:132469193-132469231 chr2 132469193 132469231 (TTG)n Simple_repeat + chr2:132469851-132469885 chr2 132469851 132469885 (ATAT)n Simple_repeat + chr2:132472863-132472889 chr2 132472863 132472889 (TG)n Simple_repeat + chr21:33042941-33042967 chr21 33042941 33042967 (CA)n Simple_repeat + chr2:133104471-133104495 chr2 133104471 133104495 (GGTA)n Simple_repeat + chr2:134353661-134353900 chr2 134353661 134353900 7SK RNA + chr21:34875527-34875824 chr21 34875527 34875824 AluY SINE - chr21:34875832-34876120 chr21 34875832 34876120 AluSc8 SINE - chr21:37480249-37480340 chr21 37480249 37480340 OldhAT1 DNA + chr21:38739168-38739200 chr21 38739168 38739200 (GGC)n Simple_repeat + chr2:139030080-139030087 chr2 139030080 139030087 (ACATAC)n Simple_repeat + chr21:41101625-41101647 chr21 41101625 41101647 (AATA)n Simple_repeat + chr21:44303424-44303441 chr21 44303424 44303441 (T)n Simple_repeat + chr21:44467587-44467703 chr21 44467587 44467703 MIR SINE - chr21:44469169-44470383 chr21 44469169 44470383 AluJb SINE - chr21:44471440-44471581 chr21 44471440 44471581 AluSz SINE + chr21:44471582-44471782 chr21 44471582 44471782 AluSz SINE + chr21:44471782-44472334 chr21 44471782 44472334 AluSx1 SINE + chr21:44471856-44472160 chr21 44471856 44472160 AluSg SINE + chr21:44472711-44473011 chr21 44472711 44473011 AluSx SINE + chr21:45225664-45225700 chr21 45225664 45225700 (TTTTGAG)n Simple_repeat + chr21:45905222-45906040 chr21 45905222 45906040 LTR1A2 LTR + chr21:45916370-45916442 chr21 45916370 45916442 UCON47 Unknown - chr21:46710942-46711375 chr21 46710942 46711375 LTR42 LTR - chr21:46715623-46715852 chr21 46715623 46715852 MLT1A LTR - chr21:46716712-46716937 chr21 46716712 46716937 MER58A DNA + chr21:47649317-47649353 chr21 47649317 47649353 G-rich Low_complexity + chr21:47654765-47654902 chr21 47654765 47654902 L2c LINE + chr2:150423448-150423500 chr2 150423448 150423500 MER53 DNA - chr2:150424074-150424219 chr2 150424074 150424219 MIR3 SINE + chr2:150424832-150425040 chr2 150424832 150425040 MER20 DNA - chr2:150425059-150425435 chr2 150425059 150425435 L1ME3A LINE + chr2:152647714-152647748 chr2 152647714 152647748 (AACC)n Simple_repeat + chr2:152651822-152651930 chr2 152651822 152651930 L1ME4c LINE + chr2:152654072-152654243 chr2 152654072 152654243 UCON44 DNA + chr2:152654926-152655233 chr2 152654926 152655233 AluY SINE + chr2:157263442-157263708 chr2 157263442 157263708 AluSx SINE + chr2:157575593-157575623 chr2 157575593 157575623 (ATT)n Simple_repeat + chr2:160511153-160511183 chr2 160511153 160511183 (AGAAA)n Simple_repeat + chr2:160530875-160530934 chr2 160530875 160530934 A-rich Low_complexity + chr2:160533158-160533192 chr2 160533158 160533192 (CA)n Simple_repeat + chr2:160535857-160535907 chr2 160535857 160535907 L1P5 LINE - chr2:160537232-160537268 chr2 160537232 160537268 (TCCTTA)n Simple_repeat + chr2:160537956-160537983 chr2 160537956 160537983 A-rich Low_complexity + chr2:160552641-160552675 chr2 160552641 160552675 (CTATTTT)n Simple_repeat + chr2:160554191-160554256 chr2 160554191 160554256 (ATATTAA)n Simple_repeat + chr2:160558538-160558559 chr2 160558538 160558559 (TA)n Simple_repeat + chr2:160560949-160560980 chr2 160560949 160560980 (CCTC)n Simple_repeat + chr2:160562595-160562621 chr2 160562595 160562621 (AC)n Simple_repeat + chr2:160562737-160562789 chr2 160562737 160562789 A-rich Low_complexity + chr2:160563024-160563059 chr2 160563024 160563059 (GT)n Simple_repeat + chr2:160563904-160563923 chr2 160563904 160563923 (AAT)n Simple_repeat + chr2:160565648-160565670 chr2 160565648 160565670 (A)n Simple_repeat + chr2:160565682-160565746 chr2 160565682 160565746 AluSq SINE + chr2:160568777-160568812 chr2 160568777 160568812 (GCCA)n Simple_repeat + chr2:166558859-166558884 chr2 166558859 166558884 (TTGT)n Simple_repeat + chr2:168155069-168155147 chr2 168155069 168155147 (TA)n Simple_repeat + chr2:168155137-168155177 chr2 168155137 168155177 (ATAGA)n Simple_repeat + chr2:168156713-168156736 chr2 168156713 168156736 A-rich Low_complexity + chr2:168349387-168349412 chr2 168349387 168349412 (TG)n Simple_repeat + chr2:168350821-168350859 chr2 168350821 168350859 Alu SINE + chr2:168356474-168356515 chr2 168356474 168356515 (GT)n Simple_repeat + chr2:168373223-168373249 chr2 168373223 168373249 (TTG)n Simple_repeat + chr2:168374529-168374554 chr2 168374529 168374554 (ACA)n Simple_repeat + chr2:168389048-168389087 chr2 168389048 168389087 (AC)n Simple_repeat + chr2:168392075-168392111 chr2 168392075 168392111 A-rich Low_complexity + chr2:168394840-168394924 chr2 168394840 168394924 (TGTATA)n Simple_repeat + chr2:168404890-168405318 chr2 168404890 168405318 MLT1J LTR + chr2:168405185-168405237 chr2 168405185 168405237 (GT)n Simple_repeat + chr2:168406315-168406352 chr2 168406315 168406352 (TATTTT)n Simple_repeat + chr2:168433015-168433064 chr2 168433015 168433064 (T)n Simple_repeat + chr2:168435868-168435911 chr2 168435868 168435911 MER5B DNA + chr2:168457564-168457589 chr2 168457564 168457589 (GTTT)n Simple_repeat + chr2:168463695-168463724 chr2 168463695 168463724 A-rich Low_complexity + chr2:168464019-168464045 chr2 168464019 168464045 (TG)n Simple_repeat + chr2:168467420-168467437 chr2 168467420 168467437 (A)n Simple_repeat + chr2:168468877-168468906 chr2 168468877 168468906 (TTA)n Simple_repeat + chr2:168471228-168471279 chr2 168471228 168471279 A-rich Low_complexity + chr2:168473204-168473229 chr2 168473204 168473229 (AATA)n Simple_repeat + chr2:168479132-168479218 chr2 168479132 168479218 Kanga1c DNA + chr2:168479192-168479232 chr2 168479192 168479232 MER104 DNA + chr2:168483664-168483683 chr2 168483664 168483683 (TG)n Simple_repeat + chr2:168488233-168488268 chr2 168488233 168488268 (CT)n Simple_repeat + chr2:168488269-168488298 chr2 168488269 168488298 (T)n Simple_repeat + chr2:168499105-168499146 chr2 168499105 168499146 Alu SINE + chr2:168511305-168511325 chr2 168511305 168511325 (T)n Simple_repeat + chr2:168533026-168533065 chr2 168533026 168533065 (AC)n Simple_repeat + chr2:168536884-168536936 chr2 168536884 168536936 (AG)n Simple_repeat + chr2:168537339-168537379 chr2 168537339 168537379 (ATGAA)n Simple_repeat + chr2:168544128-168544167 chr2 168544128 168544167 A-rich Low_complexity + chr2:168555890-168555915 chr2 168555890 168555915 (T)n Simple_repeat + chr2:168565235-168565268 chr2 168565235 168565268 (TCTAGC)n Simple_repeat + chr2:168577468-168577503 chr2 168577468 168577503 (TATTGT)n Simple_repeat + chr2:168596244-168596267 chr2 168596244 168596267 (AATG)n Simple_repeat + chr2:168607244-168607264 chr2 168607244 168607264 (A)n Simple_repeat + chr2:168609079-168609118 chr2 168609079 168609118 (CC)n Simple_repeat + chr2:168611331-168611360 chr2 168611331 168611360 A-rich Low_complexity + chr2:168614198-168614217 chr2 168614198 168614217 (AT)n Simple_repeat + chr2:168619084-168619106 chr2 168619084 168619106 (A)n Simple_repeat + chr2:168619606-168619636 chr2 168619606 168619636 (TTAT)n Simple_repeat + chr2:168624881-168624910 chr2 168624881 168624910 (TTCT)n Simple_repeat + chr2:168626576-168626617 chr2 168626576 168626617 (TTGT)n Simple_repeat + chr2:168632192-168632213 chr2 168632192 168632213 (CA)n Simple_repeat + chr2:168632550-168632588 chr2 168632550 168632588 (CA)n Simple_repeat + chr2:168633470-168633505 chr2 168633470 168633505 (GTTTT)n Simple_repeat + chr2:168643426-168643461 chr2 168643426 168643461 (TGTT)n Simple_repeat + chr2:168659591-168659631 chr2 168659591 168659631 (AC)n Simple_repeat + chr2:171627827-171627869 chr2 171627827 171627869 (GGCCCCG)n Simple_repeat + chr2:171629516-171629547 chr2 171629516 171629547 (TGTTT)n Simple_repeat + chr2:171630112-171630224 chr2 171630112 171630224 L2b LINE + chr2:171632271-171632342 chr2 171632271 171632342 LTR16D LTR - chr2:171632877-171632899 chr2 171632877 171632899 (TGT)n Simple_repeat + chr2:171634645-171634676 chr2 171634645 171634676 U2 snRNA + chr2:171635029-171635069 chr2 171635029 171635069 (TA)n Simple_repeat + chr2:171639627-171639676 chr2 171639627 171639676 A-rich Low_complexity + chr2:171639787-171639805 chr2 171639787 171639805 A-rich Low_complexity + chr2:173374105-173374282 chr2 173374105 173374282 MER5B DNA + chr2:173374429-173374553 chr2 173374429 173374553 MIR SINE + chr2:173374570-173374597 chr2 173374570 173374597 (T)n Simple_repeat + chr2:173374982-173375058 chr2 173374982 173375058 MIR3 SINE - chr2:173375805-173375967 chr2 173375805 173375967 MER5A1 DNA - chr2:173376361-173376431 chr2 173376361 173376431 X4b_DNA DNA + chr2:173376602-173376717 chr2 173376602 173376717 LTR67B LTR + chr2:179280084-179280313 chr2 179280084 179280313 AluSz6 SINE + chr2:179280313-179280553 chr2 179280313 179280553 MER33 DNA + chr2:179280810-179280954 chr2 179280810 179280954 MIRc SINE - chr2:179281779-179281910 chr2 179281779 179281910 MLT1H LTR + chr2:179281966-179282173 chr2 179281966 179282173 L1MEb LINE + chr2:179283494-179283642 chr2 179283494 179283642 MIR SINE - chr2:179285634-179285734 chr2 179285634 179285734 U5 snRNA - chr2:179285752-179285790 chr2 179285752 179285790 (ATATT)n Simple_repeat + chr2:179288714-179288965 chr2 179288714 179288965 AluSp SINE + chr2:179294593-179294649 chr2 179294593 179294649 L2a LINE + chr2:179295068-179295184 chr2 179295068 179295184 CR1_Mam LINE - chr2:181937847-181937864 chr2 181937847 181937864 (T)n Simple_repeat + chr2:186290837-186290879 chr2 186290837 186290879 A-rich Low_complexity + chr2:186291441-186291472 chr2 186291441 186291472 (ATCTAT)n Simple_repeat + chr2:186292439-186292468 chr2 186292439 186292468 (TTAAT)n Simple_repeat + chr2:186295100-186295142 chr2 186295100 186295142 (TTATA)n Simple_repeat + chr2:186302413-186302448 chr2 186302413 186302448 A-rich Low_complexity + chr2:186310032-186310065 chr2 186310032 186310065 (ATACAC)n Simple_repeat + chr2:186317827-186317850 chr2 186317827 186317850 (AC)n Simple_repeat + chr2:186369365-186369403 chr2 186369365 186369403 L2d2 LINE - chr2:186385405-186385427 chr2 186385405 186385427 (AT)n Simple_repeat + chr2:186387005-186387033 chr2 186387005 186387033 (ATATCT)n Simple_repeat + chr2:186389885-186389911 chr2 186389885 186389911 (TAA)n Simple_repeat + chr2:187375485-187375703 chr2 187375485 187375703 MER30 DNA + chr2:187375955-187376093 chr2 187375955 187376093 Tigger19a DNA + chr2:187377363-187377451 chr2 187377363 187377451 L2d LINE - chr2:188895002-188905999 chr2 188895002 188905999 L1MDa LINE + chr2:190341507-190341835 chr2 190341507 190341835 L1MB8 LINE - chr2:190341814-190341925 chr2 190341814 190341925 L1M3 LINE - chr2:192071403-192071409 chr2 192071403 192071409 (GCCTCT)n Simple_repeat + chr2:202897175-202897205 chr2 202897175 202897205 (TG)n Simple_repeat + chr2:202897205-202897251 chr2 202897205 202897251 GA-rich Low_complexity + chr2:202898826-202898942 chr2 202898826 202898942 (GCG)n Simple_repeat + chr2:203170746-203170841 chr2 203170746 203170841 MER5A DNA - chr2:204162351-204162418 chr2 204162351 204162418 AluSx3 SINE + chr2:204162418-204162731 chr2 204162418 204162731 AluSx SINE + chr2:204162732-204162823 chr2 204162732 204162823 L1M LINE + chr2:204162828-204163134 chr2 204162828 204163134 AluJr SINE + chr2:204163793-204163834 chr2 204163793 204163834 (TTACACT)n Simple_repeat + chr2:204164032-204164162 chr2 204164032 204164162 FRAM SINE + chr2:204164315-204164613 chr2 204164315 204164613 AluSp SINE + chr2:204165967-204166293 chr2 204165967 204166293 AluJo SINE - chr2:204167267-204167322 chr2 204167267 204167322 (AT)n Simple_repeat + chr2:204168030-204168074 chr2 204168030 204168074 AluSx SINE - chr2:204168156-204168448 chr2 204168156 204168448 AluSq2 SINE + chr2:204168449-204168617 chr2 204168449 204168617 AluSz6 SINE + chr2:204169377-204169653 chr2 204169377 204169653 AluJb SINE + chr2:206764842-206766266 chr2 206764842 206766266 MLT1J2 LTR + chr2:206765353-206765671 chr2 206765353 206765671 7SK RNA + chr2:206765671-206765710 chr2 206765671 206765710 (TGTT)n Simple_repeat + chr2:206766004-206766027 chr2 206766004 206766027 (AAAC)n Simple_repeat + chr2:206766946-206767097 chr2 206766946 206767097 MER134 DNA? + chr2:206768868-206768961 chr2 206768868 206768961 L2c LINE + chr2:206770755-206771059 chr2 206770755 206771059 AluY SINE + chr2:206771785-206772032 chr2 206771785 206772032 L2d2 LINE + chr2:206774896-206774928 chr2 206774896 206774928 (CAGAAG)n Simple_repeat + chr2:206776925-206777000 chr2 206776925 206777000 (GATG)n Simple_repeat + chr2:206777835-206778144 chr2 206777835 206778144 AluSz SINE + chr2:206778334-206778399 chr2 206778334 206778399 (TGAA)n Simple_repeat + chr2:206780027-206780193 chr2 206780027 206780193 Tigger14a DNA + chr2:206780976-206781287 chr2 206780976 206781287 AluJo SINE + chr2:206781297-206781614 chr2 206781297 206781614 AluJb SINE + chr2:206781617-206781945 chr2 206781617 206781945 L1MC1 LINE + chr2:206781946-206782009 chr2 206781946 206782009 (AC)n Simple_repeat + chr2:206783644-206783992 chr2 206783644 206783992 THE1D LTR + chr2:206784051-206784783 chr2 206784051 206784783 HUERS-P3-int LTR + chr2:206784783-206784952 chr2 206784783 206784952 LTR9 LTR + chr2:206784956-206785021 chr2 206784956 206785021 (AGAA)n Simple_repeat + chr2:206785311-206785533 chr2 206785311 206785533 MIR SINE + chr2:206786273-206786372 chr2 206786273 206786372 MIRb SINE + chr2:206787665-206787809 chr2 206787665 206787809 X17_LINE LINE + chr2:206789878-206790139 chr2 206789878 206790139 AluJb SINE + chr2:206793100-206793164 chr2 206793100 206793164 (AATG)n Simple_repeat + chr2:206793366-206793520 chr2 206793366 206793520 MIR3 SINE + chr2:206794237-206794271 chr2 206794237 206794271 (AAT)n Simple_repeat + chr2:206796642-206797492 chr2 206796642 206797492 MER41B LTR + chr2:206797578-206797915 chr2 206797578 206797915 MLT1A0 LTR + chr2:206797964-206798070 chr2 206797964 206798070 L2 LINE + chr2:206798083-206798207 chr2 206798083 206798207 Tigger13a DNA + chr2:206798445-206799057 chr2 206798445 206799057 LTR48 LTR + chr2:206799511-206799602 chr2 206799511 206799602 Tigger13a DNA + chr2:206799638-206799940 chr2 206799638 206799940 AluSq2 SINE + chr2:206800450-206800766 chr2 206800450 206800766 AluSz6 SINE + chr2:206803891-206804649 chr2 206803891 206804649 LTR17 LTR + chr2:206805095-206805406 chr2 206805095 206805406 AluY SINE + chr2:206805988-206806326 chr2 206805988 206806326 THE1B LTR + chr2:206807160-206807458 chr2 206807160 206807458 AluSg SINE + chr2:206807584-206807885 chr2 206807584 206807885 AluSz SINE + chr2:206808729-206809032 chr2 206808729 206809032 AluSz SINE + chr2:206809032-206809073 chr2 206809032 206809073 (AC)n Simple_repeat + chr2:206809942-206810247 chr2 206809942 206810247 AluSx4 SINE + chr2:206811821-206812112 chr2 206811821 206812112 AluJb SINE + chr2:206812469-206812616 chr2 206812469 206812616 AluJb SINE + chr2:206813464-206813734 chr2 206813464 206813734 AluJb SINE + chr2:206814182-206814735 chr2 206814182 206814735 AluSx SINE + chr2:206815069-206815105 chr2 206815069 206815105 GA-rich Low_complexity + chr2:206815111-206815407 chr2 206815111 206815407 AluSz SINE + chr2:206815714-206815785 chr2 206815714 206815785 MIR SINE + chr2:206816118-206816409 chr2 206816118 206816409 MLT1G1 LTR + chr2:206816471-206816491 chr2 206816471 206816491 (A)n Simple_repeat + chr2:206816531-206816677 chr2 206816531 206816677 L2a LINE + chr2:206816755-206816792 chr2 206816755 206816792 (AT)n Simple_repeat + chr2:206816996-206819181 chr2 206816996 206819181 HAL1 LINE + chr2:206819197-206819346 chr2 206819197 206819346 L1ME4a LINE + chr2:206819726-206819845 chr2 206819726 206819845 AluJo SINE + chr2:206819857-206820193 chr2 206819857 206820193 AluJr SINE + chr2:206820193-206820240 chr2 206820193 206820240 MER5B DNA + chr2:206821245-206821437 chr2 206821245 206821437 MER20 DNA + chr2:206822839-206823131 chr2 206822839 206823131 AluSp SINE + chr2:206823488-206824226 chr2 206823488 206824226 L1MB7 LINE + chr2:206824255-206824297 chr2 206824255 206824297 MamTip2 DNA + chr2:206824995-206825275 chr2 206824995 206825275 AluJb SINE + chr2:206826635-206827406 chr2 206826635 206827406 MER31A LTR + chr2:206827720-206827882 chr2 206827720 206827882 AluJr SINE + chr2:206829487-206829582 chr2 206829487 206829582 (AT)n Simple_repeat + chr2:206832626-206833669 chr2 206832626 206833669 LTR64 LTR + chr2:206832756-206833062 chr2 206832756 206833062 AluSq2 SINE + chr2:206834706-206834996 chr2 206834706 206834996 AluJr SINE + chr2:206835025-206836925 chr2 206835025 206836925 LTR49-int LTR + chr2:206835632-206835820 chr2 206835632 206835820 MER34B-int LTR + chr2:206836193-206836335 chr2 206836193 206836335 MER31-int LTR + chr2:206837129-206837230 chr2 206837129 206837230 HERV35I-int LTR + chr2:206837230-206837348 chr2 206837230 206837348 AluSz6 SINE + chr2:206837357-206837386 chr2 206837357 206837386 (TAAAA)n Simple_repeat + chr2:206837397-206837989 chr2 206837397 206837989 AluJb SINE + chr2:206837996-206838295 chr2 206837996 206838295 AluSx SINE + chr2:206838731-206839035 chr2 206838731 206839035 AluJr SINE + chr2:206838849-206838881 chr2 206838849 206838881 (AT)n Simple_repeat + chr2:206839068-206839349 chr2 206839068 206839349 AluY SINE + chr2:206839349-206839374 chr2 206839349 206839374 (AAAAG)n Simple_repeat + chr2:206839724-206839809 chr2 206839724 206839809 L1MB8 LINE + chr2:206841463-206841765 chr2 206841463 206841765 AluSp SINE + chr2:206841781-206843026 chr2 206841781 206843026 LTR12E LTR + chr2:206843026-206843153 chr2 206843026 206843153 LTR12C LTR + chr2:206843454-206843804 chr2 206843454 206843804 THE1B LTR + chr2:206844099-206844167 chr2 206844099 206844167 (AT)n Simple_repeat + chr2:206845451-206845756 chr2 206845451 206845756 AluSq2 SINE + chr2:206845871-206846018 chr2 206845871 206846018 L3 LINE + chr2:206846032-206846335 chr2 206846032 206846335 AluSx4 SINE + chr2:206846541-206846566 chr2 206846541 206846566 (A)n Simple_repeat + chr2:206848800-206849116 chr2 206848800 206849116 AluSz SINE + chr2:206849357-206849401 chr2 206849357 206849401 A-rich Low_complexity + chr2:206849515-206849706 chr2 206849515 206849706 Tigger23a DNA + chr2:206851444-206852155 chr2 206851444 206852155 HSMAR2 DNA + chr2:206853472-206853689 chr2 206853472 206853689 (TAAAA)n Simple_repeat + chr2:206854433-206854512 chr2 206854433 206854512 AluSz SINE + chr2:206854977-206855340 chr2 206854977 206855340 MLT1A1 LTR + chr2:206855576-206855874 chr2 206855576 206855874 AluSx SINE + chr2:206856432-206856723 chr2 206856432 206856723 AluJb SINE + chr2:206856763-206856869 chr2 206856763 206856869 AluSc8 SINE + chr2:206857044-206857320 chr2 206857044 206857320 AluJr SINE + chr2:206857612-206857721 chr2 206857612 206857721 AluJo SINE + chr2:206857723-206858028 chr2 206857723 206858028 AluJb SINE + chr2:206951403-206951448 chr2 206951403 206951448 (TTTATG)n Simple_repeat + chr2:206951448-206951457 chr2 206951448 206951457 (TTTA)n Simple_repeat + chr2:206953067-206953183 chr2 206953067 206953183 FLAM_C SINE + chr2:206953390-206953679 chr2 206953390 206953679 AluSq2 SINE + chr2:206954178-206954226 chr2 206954178 206954226 (TCTATGC)n Simple_repeat + chr2:206955196-206955486 chr2 206955196 206955486 AluSx1 SINE + chr2:206955768-206955927 chr2 206955768 206955927 FRAM SINE + chr2:206955927-206956234 chr2 206955927 206956234 AluSx3 SINE + chr2:206956234-206956378 chr2 206956234 206956378 (AT)n Simple_repeat + chr2:206957182-206957350 chr2 206957182 206957350 Tigger16a DNA + chr2:206958155-206958249 chr2 206958155 206958249 MIR SINE + chr2:206958674-206958765 chr2 206958674 206958765 MIR SINE + chr2:206959020-206959579 chr2 206959020 206959579 AluJb SINE + chr2:206959162-206959388 chr2 206959162 206959388 AluSx SINE + chr2:206959388-206959417 chr2 206959388 206959417 (AC)n Simple_repeat + chr2:206959419-206959494 chr2 206959419 206959494 (TG)n Simple_repeat + chr2:206959800-206959931 chr2 206959800 206959931 L2a LINE + chr2:206962151-206962226 chr2 206962151 206962226 (AT)n Simple_repeat + chr2:206962253-206962291 chr2 206962253 206962291 A-rich Low_complexity + chr2:206962498-206962559 chr2 206962498 206962559 AluJr SINE + chr2:206962559-206962866 chr2 206962559 206962866 AluSx1 SINE + chr2:206962881-206962937 chr2 206962881 206962937 Tigger5b DNA + chr2:206962935-206963575 chr2 206962935 206963575 Tigger5 DNA + chr2:206962981-206963275 chr2 206962981 206963275 AluYf1 SINE + chr2:206963931-206964225 chr2 206963931 206964225 AluSx SINE + chr2:206965051-206965102 chr2 206965051 206965102 (TTTC)n Simple_repeat + chr2:206969267-206969543 chr2 206969267 206969543 AluJo SINE + chr2:206969548-206969665 chr2 206969548 206969665 FLAM_C SINE + chr2:206970553-206970847 chr2 206970553 206970847 AluSg SINE + chr2:206971510-206971639 chr2 206971510 206971639 MER135 DNA + chr2:206972719-206972818 chr2 206972719 206972818 (AT)n Simple_repeat + chr2:206974695-206974764 chr2 206974695 206974764 GA-rich Low_complexity + chr2:206974710-206974742 chr2 206974710 206974742 G-rich Low_complexity + chr2:206974763-206974778 chr2 206974763 206974778 (GCAG)n Simple_repeat + chr2:206974778-206975061 chr2 206974778 206975061 AluY SINE + chr2:206975061-206975090 chr2 206975061 206975090 (AAAAG)n Simple_repeat + chr2:206975664-206976307 chr2 206975664 206976307 AluJb SINE + chr2:206975798-206976110 chr2 206975798 206976110 AluSz SINE + chr2:206976875-206977456 chr2 206976875 206977456 MLT1G LTR + chr2:206977474-206977592 chr2 206977474 206977592 MLT1J LTR + chr2:207027788-207028077 chr2 207027788 207028077 AluJr SINE + chr2:207029565-207029863 chr2 207029565 207029863 AluSc8 SINE + chr2:207030068-207030317 chr2 207030068 207030317 AluSc SINE + chr2:207033188-207034845 chr2 207033188 207034845 THE1B-int LTR + chr2:207039389-207039867 chr2 207039389 207039867 MLT1H1 LTR + chr2:207039637-207039663 chr2 207039637 207039663 (GGGA)n Simple_repeat + chr2:207083054-207083360 chr2 207083054 207083360 MER102a DNA + chr2:207083364-207083402 chr2 207083364 207083402 (TTTCTA)n Simple_repeat + chr2:207083601-207083890 chr2 207083601 207083890 MER97b DNA + chr2:207083904-207085089 chr2 207083904 207085089 MER97b DNA + chr2:207084649-207084928 chr2 207084649 207084928 AluJr SINE + chr2:207085178-207085695 chr2 207085178 207085695 MER97c DNA + chr2:207085297-207085575 chr2 207085297 207085575 AluJr SINE + chr2:207086038-207086276 chr2 207086038 207086276 7SK RNA + chr2:207657451-207657627 chr2 207657451 207657627 MIR SINE - chr2:207657666-207657974 chr2 207657666 207657974 AluSc SINE + chr2:207658036-207658125 chr2 207658036 207658125 MIR3 SINE - chr2:207658202-207658285 chr2 207658202 207658285 MIR3 SINE + chr2:207658527-207658738 chr2 207658527 207658738 L1M5 LINE + chr2:207658765-207658972 chr2 207658765 207658972 L1MA10 LINE - chr2:207659783-207659816 chr2 207659783 207659816 (CACAG)n Simple_repeat + chr2:208973655-208973768 chr2 208973655 208973768 MER91C DNA + chr2:208973811-208973838 chr2 208973811 208973838 (TTTTG)n Simple_repeat + chr2:208975662-208975743 chr2 208975662 208975743 L1PA4 LINE - chr2:208976075-208976101 chr2 208976075 208976101 (CT)n Simple_repeat + chr2:208976100-208976157 chr2 208976100 208976157 (TA)n Simple_repeat + chr2:208977234-208977260 chr2 208977234 208977260 (GCAAG)n Simple_repeat + chr2:208977362-208977400 chr2 208977362 208977400 (GGCGG)n Simple_repeat + chr2:208985182-208985234 chr2 208985182 208985234 (CT)n Simple_repeat + chr2:208985467-208985495 chr2 208985467 208985495 (T)n Simple_repeat + chr2:217072645-217072940 chr2 217072645 217072940 AluSz SINE - chr2:217073182-217073263 chr2 217073182 217073263 MER94 DNA + chr2:217074576-217074673 chr2 217074576 217074673 MIRb SINE + chr2:217076493-217082304 chr2 217076493 217082304 MER101-int LTR - chr2:217077384-217078017 chr2 217077384 217078017 LOR1-int LTR - chr2:217079413-217079464 chr2 217079413 217079464 AluYj4 SINE + chr2:217079470-217079750 chr2 217079470 217079750 LOR1-int LTR - chr2:217079777-217080876 chr2 217079777 217080876 LTR57-int LTR - chr2:217082750-217082957 chr2 217082750 217082957 MIR SINE + chr2:217083799-217083964 chr2 217083799 217083964 MLT1C LTR - chr2:217084455-217084983 chr2 217084455 217084983 LTR32 LTR + chr22:18038077-18038116 chr22 18038077 18038116 Zaphod3 DNA + chr22:18697715-18697746 chr22 18697715 18697746 (AGAC)n Simple_repeat + chr22:19159729-19159784 chr22 19159729 19159784 L3 LINE + chr22:22011363-22011429 chr22 22011363 22011429 GA-rich Low_complexity + chr2:223428171-223428189 chr2 223428171 223428189 (GTG)n Simple_repeat + chr22:23879376-23879437 chr22 23879376 23879437 LTR5B LTR + chr22:23879711-23879759 chr22 23879711 23879759 (TG)n Simple_repeat + chr22:23879926-23889087 chr22 23879926 23889087 HERVK-int LTR + chr22:23889087-23890083 chr22 23889087 23890083 MER11A LTR + chr22:24016086-24016099 chr22 24016086 24016099 (TCTTCAC)n Simple_repeat + chr22:24029392-24029520 chr22 24029392 24029520 MLT1A0 LTR + chr22:24029523-24029581 chr22 24029523 24029581 MLT1F2 LTR - chr22:24029894-24030022 chr22 24029894 24030022 MIR SINE - chr22:24046887-24047009 chr22 24046887 24047009 L1MA6 LINE + chr22:24047036-24047206 chr22 24047036 24047206 L1M2 LINE - chr22:24047372-24047397 chr22 24047372 24047397 (AG)n Simple_repeat + chr22:24050277-24050307 chr22 24050277 24050307 (GTGC)n Simple_repeat + chr22:24050539-24050565 chr22 24050539 24050565 (AAC)n Simple_repeat + chr22:24051833-24051856 chr22 24051833 24051856 (TG)n Simple_repeat + chr22:24051858-24051898 chr22 24051858 24051898 (ATACAC)n Simple_repeat + chr22:24051914-24052018 chr22 24051914 24052018 L1M2 LINE - chr22:24055197-24055328 chr22 24055197 24055328 FLAM_C SINE - chr22:24055373-24055438 chr22 24055373 24055438 FRAM SINE + chr22:24083107-24083139 chr22 24083107 24083139 GA-rich Low_complexity + chr22:24374328-24374633 chr22 24374328 24374633 AluSp SINE + chr22:25851920-25852031 chr22 25851920 25852031 MIRb SINE + chr22:25855780-25855869 chr22 25855780 25855869 MIRc SINE + chr22:25855898-25855986 chr22 25855898 25855986 AluSq4 SINE - chr22:25856355-25856555 chr22 25856355 25856555 MER1B DNA + chr22:25856554-25856619 chr22 25856554 25856619 MER1B DNA + chr22:25856776-25857156 chr22 25856776 25857156 L1PA8 LINE + chr22:25857233-25857342 chr22 25857233 25857342 L1PA13 LINE + chr22:25857366-25857542 chr22 25857366 25857542 L2b LINE - chr22:25858901-25859024 chr22 25858901 25859024 MIRb SINE + chr22:25859360-25859397 chr22 25859360 25859397 (TCAGG)n Simple_repeat + chr22:25865325-25865360 chr22 25865325 25865360 (TAT)n Simple_repeat + chr22:25867133-25867180 chr22 25867133 25867180 MIR1_Amn SINE - chr22:25899706-25899750 chr22 25899706 25899750 (ATT)n Simple_repeat + chr22:25902869-25902910 chr22 25902869 25902910 (ATCC)n Simple_repeat + chr22:25902917-25902959 chr22 25902917 25902959 (AT)n Simple_repeat + chr22:25908548-25908582 chr22 25908548 25908582 (AATG)n Simple_repeat + chr22:25915254-25915278 chr22 25915254 25915278 (GCTT)n Simple_repeat + chr22:25924197-25924223 chr22 25924197 25924223 (TCA)n Simple_repeat + chr22:25942705-25942726 chr22 25942705 25942726 (A)n Simple_repeat + chr22:26908677-26908802 chr22 26908677 26908802 MIR SINE + chr22:26909007-26909038 chr22 26909007 26909038 (AATT)n Simple_repeat + chr22:26909383-26909438 chr22 26909383 26909438 MIRc SINE + chr22:26909474-26909592 chr22 26909474 26909592 L2d2 LINE + chr22:27044355-27044405 chr22 27044355 27044405 G-rich Low_complexity + chr22:27048293-27048308 chr22 27048293 27048308 (CT)n Simple_repeat + chr22:27048619-27048629 chr22 27048619 27048629 (CT)n Simple_repeat + chr22:27054212-27054424 chr22 27054212 27054424 MIRb SINE - chr22:27055519-27055655 chr22 27055519 27055655 FLAM_C SINE + chr22:27056153-27056454 chr22 27056153 27056454 AluSx SINE + chr22:27056496-27056637 chr22 27056496 27056637 L1ME4c LINE - chr22:27056735-27056925 chr22 27056735 27056925 MIRb SINE + chr22:27057545-27057688 chr22 27057545 27057688 MIRb SINE - chr22:27057945-27058219 chr22 27057945 27058219 AluJr SINE - chr22:27058264-27058353 chr22 27058264 27058353 MIRb SINE + chr22:27058916-27059071 chr22 27058916 27059071 MIRc SINE - chr22:27059673-27059954 chr22 27059673 27059954 L1ME1 LINE - chr22:27059969-27060269 chr22 27059969 27060269 AluSz SINE - chr22:27060322-27060716 chr22 27060322 27060716 L1MB8 LINE - chr22:27060765-27060826 chr22 27060765 27060826 Charlie16a DNA + chr22:27060859-27061354 chr22 27060859 27061354 MIRb SINE - chr22:27060918-27061205 chr22 27060918 27061205 AluSx SINE + chr22:27061205-27061254 chr22 27061205 27061254 (AGAA)n Simple_repeat + chr22:27062460-27062554 chr22 27062460 27062554 MIR1_Amn SINE - chr22:27062910-27062938 chr22 27062910 27062938 (GAGG)n Simple_repeat + chr22:27063124-27063223 chr22 27063124 27063223 L2c LINE - chr22:27063296-27063426 chr22 27063296 27063426 (GT)n Simple_repeat + chr22:27063640-27063933 chr22 27063640 27063933 AluJr SINE - chr22:27065214-27065606 chr22 27065214 27065606 MLT1B LTR - chr22:27065838-27065980 chr22 27065838 27065980 MIRb SINE + chr22:27066212-27066505 chr22 27066212 27066505 L2d LINE - chr22:27066565-27066589 chr22 27066565 27066589 (A)n Simple_repeat + chr22:27066625-27066747 chr22 27066625 27066747 MER103C DNA + chr22:27067643-27067755 chr22 27067643 27067755 MIRb SINE + chr22:27070799-27070840 chr22 27070799 27070840 L2a LINE - chr22:27070840-27073891 chr22 27070840 27073891 L2b LINE - chr22:27070969-27071069 chr22 27070969 27071069 L2a LINE - chr22:28071976-28072192 chr22 28071976 28072192 MamRep137 DNA + chr22:28083004-28083058 chr22 28083004 28083058 L2b LINE - chr22:28138294-28141116 chr22 28138294 28141116 HERVH-int LTR + chr22:28319525-28319778 chr22 28319525 28319778 MIRb SINE + chr22:28320153-28320546 chr22 28320153 28320546 HSMAR1 DNA + chr22:28320551-28320805 chr22 28320551 28320805 HSMAR1 DNA + chr22:28333208-28333262 chr22 28333208 28333262 L2c LINE - chr22:28336626-28336680 chr22 28336626 28336680 (TCTC)n Simple_repeat + chr22:28342952-28343006 chr22 28342952 28343006 (GT)n Simple_repeat + chr22:28357748-28357783 chr22 28357748 28357783 (AATTTTC)n Simple_repeat + chr22:28358706-28358736 chr22 28358706 28358736 (AAT)n Simple_repeat + chr22:28359087-28359130 chr22 28359087 28359130 (TTTTAT)n Simple_repeat + chr22:28371776-28371814 chr22 28371776 28371814 (AC)n Simple_repeat + chr22:29190273-29190318 chr22 29190273 29190318 MIRc SINE + chr22:30883817-30883888 chr22 30883817 30883888 MIR1_Amn SINE + chr22:31365836-31365957 chr22 31365836 31365957 MIR1_Amn SINE + chr22:31365977-31366032 chr22 31365977 31366032 MIRc SINE + chr22:31366045-31366297 chr22 31366045 31366297 MIR3 SINE - chr22:31366080-31366259 chr22 31366080 31366259 Charlie4z DNA + chr22:31367741-31368084 chr22 31367741 31368084 L2c LINE + chr22:31368653-31368692 chr22 31368653 31368692 (TTTTCTG)n Simple_repeat + chr22:31369584-31369788 chr22 31369584 31369788 MIRc SINE - chr22:31371217-31371397 chr22 31371217 31371397 Charlie15a DNA - chr22:31374417-31374882 chr22 31374417 31374882 MLT1K LTR + chr22:31375042-31375248 chr22 31375042 31375248 L1ME4a LINE + chr22:31744730-31744846 chr22 31744730 31744846 MIRb SINE - chr22:31746254-31746374 chr22 31746254 31746374 MIR3 SINE - chr22:31746901-31747027 chr22 31746901 31747027 L2d2 LINE + chr22:31832827-31832920 chr22 31832827 31832920 MLT1L LTR - chr2:232367413-232367458 chr2 232367413 232367458 UCON71_Crp Unknown + chr2:232370357-232370382 chr2 232370357 232370382 (TTAT)n Simple_repeat + chr2:232376600-232376635 chr2 232376600 232376635 U6 snRNA - chr2:232377433-232377456 chr2 232377433 232377456 (T)n Simple_repeat + chr2:232378611-232378641 chr2 232378611 232378641 (A)n Simple_repeat + chr2:234776109-234776421 chr2 234776109 234776421 AluSq SINE - chr22:35827246-35827303 chr22 35827246 35827303 MIR1_Amn SINE - chr2:238968619-238968644 chr2 238968619 238968644 (A)n Simple_repeat + chr22:39081120-39081248 chr22 39081120 39081248 MIR SINE - chr22:39919600-39919678 chr22 39919600 39919678 MIR SINE - chr22:39920508-39920610 chr22 39920508 39920610 MIR3 SINE - chr22:39920801-39920978 chr22 39920801 39920978 L2a LINE + chr22:39921015-39921115 chr22 39921015 39921115 MIR SINE - chr2:241522532-241522638 chr2 241522532 241522638 MIRb SINE + chr22:41683420-41683461 chr22 41683420 41683461 AluYg6 SINE - chr22:41685236-41685330 chr22 41685236 41685330 MIR1_Amn SINE - chr22:41687117-41687241 chr22 41687117 41687241 L2a LINE - chr22:41692346-41692368 chr22 41692346 41692368 (AAAC)n Simple_repeat + chr22:41696432-41696484 chr22 41696432 41696484 (CA)n Simple_repeat + chr22:41818444-41818454 chr22 41818444 41818454 (T)n Simple_repeat + chr22:41844447-41844511 chr22 41844447 41844511 (CCCCCT)n Simple_repeat + chr22:41844759-41844899 chr22 41844759 41844899 MIRb SINE + chr2:242166268-242166304 chr2 242166268 242166304 (CTC)n Simple_repeat + chr22:42222961-42223066 chr22 42222961 42223066 MIR1_Amn SINE + chr22:42223416-42223765 chr22 42223416 42223765 MER51B LTR - chr22:42224569-42224596 chr22 42224569 42224596 (CTCC)n Simple_repeat + chr22:42224964-42225175 chr22 42224964 42225175 MER20 DNA - chr22:42225553-42225682 chr22 42225553 42225682 L2b LINE - chr22:42225767-42226073 chr22 42225767 42226073 AluSc SINE - chr22:42226871-42227187 chr22 42226871 42227187 AluSx SINE - chr22:42227193-42227490 chr22 42227193 42227490 AluSz SINE - chr22:42227573-42227898 chr22 42227573 42227898 L2c LINE + chr22:42227904-42228010 chr22 42227904 42228010 MIR SINE - chr22:42228101-42228229 chr22 42228101 42228229 L1M5 LINE - chr22:42520285-42520324 chr22 42520285 42520324 (GGCA)n Simple_repeat + chr22:42760540-42760567 chr22 42760540 42760567 (TTTA)n Simple_repeat + chr22:42761881-42762002 chr22 42761881 42762002 MIRc SINE - chr22:42761994-42762210 chr22 42761994 42762210 MIRb SINE - chr22:42762609-42762634 chr22 42762609 42762634 (A)n Simple_repeat + chr22:42763210-42763414 chr22 42763210 42763414 L2b LINE - chr22:42764199-42764305 chr22 42764199 42764305 MIRc SINE + chr22:42971526-42971572 chr22 42971526 42971572 (AC)n Simple_repeat + chr2:243031641-243031673 chr2 243031641 243031673 (CTGGCT)n Simple_repeat + chr2:243033053-243033083 chr2 243033053 243033083 (TTG)n Simple_repeat + chr2:243037905-243037973 chr2 243037905 243037973 Tigger12A DNA + chr2:243040985-243041021 chr2 243040985 243041021 (TCTCT)n Simple_repeat + chr2:243043628-243043661 chr2 243043628 243043661 (TTTCC)n Simple_repeat + chr22:44346025-44346135 chr22 44346025 44346135 AluJo SINE - chr22:44346096-44346150 chr22 44346096 44346150 SVA_C Retroposon + chr22:44346490-44346791 chr22 44346490 44346791 AluJr SINE - chr22:44346914-44347189 chr22 44346914 44347189 AluSx1 SINE + chr22:45543835-45543874 chr22 45543835 45543874 (T)n Simple_repeat + chr22:45554671-45554795 chr22 45554671 45554795 Charlie19a DNA + chr22:46647282-46647317 chr22 46647282 46647317 Zaphod DNA + chr22:47157780-47157976 chr22 47157780 47157976 MER33 DNA - chr2:25378719-25378831 chr2 25378719 25378831 FLAM_C SINE - chr2:25454813-25454834 chr2 25454813 25454834 (GT)n Simple_repeat + chr2:25455650-25455687 chr2 25455650 25455687 (ATAATA)n Simple_repeat + chr2:26529858-26529887 chr2 26529858 26529887 (TGTTT)n Simple_repeat + chr2:27979431-27979597 chr2 27979431 27979597 MIR3 SINE + chr2:27986824-27986915 chr2 27986824 27986915 L2a LINE - chr2:27990196-27990241 chr2 27990196 27990241 MER5B DNA + chr2:27990250-27990339 chr2 27990250 27990339 Charlie24 DNA + chr2:27990696-27990724 chr2 27990696 27990724 (CTCAC)n Simple_repeat + chr2:27993121-27993207 chr2 27993121 27993207 MIR3 SINE - chr2:27993932-27994040 chr2 27993932 27994040 MIRb SINE + chr2:27994049-27994125 chr2 27994049 27994125 L2a LINE - chr2:32086002-32086015 chr2 32086002 32086015 A-rich Low_complexity + chr2:32581108-32581280 chr2 32581108 32581280 L1MD2 LINE + chr2:32581280-32581392 chr2 32581280 32581392 L1MC3 LINE - chr2:32581496-32581530 chr2 32581496 32581530 (AC)n Simple_repeat + chr2:33834748-33834766 chr2 33834748 33834766 (AC)n Simple_repeat + chr2:3608968-3609025 chr2 3608968 3609025 Alu SINE - chr2:38521408-38521708 chr2 38521408 38521708 AluSc8 SINE + chr2:38969905-38970074 chr2 38969905 38970074 L1ME4b LINE + chr2:38970113-38970158 chr2 38970113 38970158 (GTACA)n Simple_repeat + chr2:39457238-39457497 chr2 39457238 39457497 AluSp SINE + chr2:39668729-39668748 chr2 39668729 39668748 (TTTA)n Simple_repeat + chr2:39685609-39685646 chr2 39685609 39685646 (AC)n Simple_repeat + chr2:39691951-39691994 chr2 39691951 39691994 (ATAT)n Simple_repeat + chr2:39693050-39693109 chr2 39693050 39693109 (CCTTT)n Simple_repeat + chr2:39697588-39697651 chr2 39697588 39697651 (TATC)n Simple_repeat + chr2:39699502-39699525 chr2 39699502 39699525 (T)n Simple_repeat + chr2:39701768-39701822 chr2 39701768 39701822 (GT)n Simple_repeat + chr2:39705398-39705437 chr2 39705398 39705437 (GT)n Simple_repeat + chr2:39706747-39706764 chr2 39706747 39706764 (T)n Simple_repeat + chr2:39707892-39707924 chr2 39707892 39707924 (AT)n Simple_repeat + chr2:39715076-39715113 chr2 39715076 39715113 (TCCC)n Simple_repeat + chr2:39720694-39720735 chr2 39720694 39720735 (TCTT)n Simple_repeat + chr2:39728595-39728622 chr2 39728595 39728622 (TTCC)n Simple_repeat + chr2:39728626-39728659 chr2 39728626 39728659 (TC)n Simple_repeat + chr2:39728845-39728883 chr2 39728845 39728883 (TTCC)n Simple_repeat + chr2:39731005-39731040 chr2 39731005 39731040 (A)n Simple_repeat + chr2:39755127-39755146 chr2 39755127 39755146 (CTT)n Simple_repeat + chr2:42665333-42665403 chr2 42665333 42665403 AluJo SINE + chr2:42667621-42667649 chr2 42667621 42667649 (A)n Simple_repeat + chr2:42669019-42669135 chr2 42669019 42669135 L2d2 LINE - chr2:47562453-47562653 chr2 47562453 47562653 BC200 scRNA + chr2:48133205-48133228 chr2 48133205 48133228 (GCG)n Simple_repeat + chr2:48133418-48133465 chr2 48133418 48133465 (TC)n Simple_repeat + chr2:48540967-48541065 chr2 48540967 48541065 MER53 DNA + chr2:55463010-55463065 chr2 55463010 55463065 MER20 DNA - chr2:55463066-55463309 chr2 55463066 55463309 AluJo SINE + chr2:55514837-55514885 chr2 55514837 55514885 MamRTE1 LINE + chr2:55861213-55861252 chr2 55861213 55861252 (TAATATT)n Simple_repeat + chr2:56355703-56355721 chr2 56355703 56355721 (TG)n Simple_repeat + chr2:56370577-56370619 chr2 56370577 56370619 (AAAAACA)n Simple_repeat + chr2:56383872-56383890 chr2 56383872 56383890 A-rich Low_complexity + chr2:5869118-5869172 chr2 5869118 5869172 MIR SINE - chr2:58712136-58712159 chr2 58712136 58712159 (TTTG)n Simple_repeat + chr2:58790890-58790916 chr2 58790890 58790916 (AATG)n Simple_repeat + chr2:58797097-58797107 chr2 58797097 58797107 (TGG)n Simple_repeat + chr2:58810684-58810701 chr2 58810684 58810701 (A)n Simple_repeat + chr2:58845145-58845163 chr2 58845145 58845163 (TG)n Simple_repeat + chr2:58854600-58854621 chr2 58854600 58854621 (GT)n Simple_repeat + chr2:58858721-58858745 chr2 58858721 58858745 (CA)n Simple_repeat + chr2:58862176-58862196 chr2 58862176 58862196 (T)n Simple_repeat + chr2:58885879-58885910 chr2 58885879 58885910 GA-rich Low_complexity + chr2:58893005-58893019 chr2 58893005 58893019 (CTTACTT)n Simple_repeat + chr2:58912865-58912885 chr2 58912865 58912885 (TCC)n Simple_repeat + chr2:58965091-58965118 chr2 58965091 58965118 (AC)n Simple_repeat + chr2:59020242-59020260 chr2 59020242 59020260 (GAT)n Simple_repeat + chr2:59077865-59077897 chr2 59077865 59077897 (A)n Simple_repeat + chr2:59084457-59084489 chr2 59084457 59084489 (TTCTCT)n Simple_repeat + chr2:59099362-59099399 chr2 59099362 59099399 (TA)n Simple_repeat + chr2:59099399-59099430 chr2 59099399 59099430 (AC)n Simple_repeat + chr2:59107995-59108044 chr2 59107995 59108044 (CT)n Simple_repeat + chr2:59108044-59108071 chr2 59108044 59108071 (AC)n Simple_repeat + chr2:59120059-59120088 chr2 59120059 59120088 (ATT)n Simple_repeat + chr2:59120400-59120433 chr2 59120400 59120433 (ATT)n Simple_repeat + chr2:59131072-59131106 chr2 59131072 59131106 (TTGTT)n Simple_repeat + chr2:59140209-59140238 chr2 59140209 59140238 (CT)n Simple_repeat + chr2:59140981-59141005 chr2 59140981 59141005 (T)n Simple_repeat + chr2:59146197-59146220 chr2 59146197 59146220 (A)n Simple_repeat + chr2:61370679-61370701 chr2 61370679 61370701 (T)n Simple_repeat + chr2:61371097-61371120 chr2 61371097 61371120 (AG)n Simple_repeat + chr2:61703278-61703313 chr2 61703278 61703313 SVA_B Retroposon + chr2:64315564-64315609 chr2 64315564 64315609 L2a LINE - chr2:64460137-64460165 chr2 64460137 64460165 (CAATAA)n Simple_repeat + chr2:64460611-64460641 chr2 64460611 64460641 (AG)n Simple_repeat + chr2:64461507-64461559 chr2 64461507 64461559 L2b LINE - chr2:64474175-64474215 chr2 64474175 64474215 (T)n Simple_repeat + chr2:64476124-64476167 chr2 64476124 64476167 (TGTTTCT)n Simple_repeat + chr2:64479280-64485604 chr2 64479280 64485604 Zaphod3 DNA - chr2:64480032-64484780 chr2 64480032 64484780 HERVH-int LTR + chr2:66498623-66498646 chr2 66498623 66498646 (TG)n Simple_repeat + chr2:67452639-67452656 chr2 67452639 67452656 (T)n Simple_repeat + chr2:67557670-67565075 chr2 67557670 67565075 L1ME1 LINE + chr2:67558648-67564733 chr2 67558648 67564733 HERVH-int LTR + chr2:67565756-67566187 chr2 67565756 67566187 MSTB1 LTR - chr2:67566399-67566633 chr2 67566399 67566633 MIR SINE - chr2:67637840-67637903 chr2 67637840 67637903 MIR3 SINE - chr2:67638465-67638826 chr2 67638465 67638826 MER47B DNA - chr2:68404209-68404228 chr2 68404209 68404228 (AGT)n Simple_repeat + chr2:68884178-68884249 chr2 68884178 68884249 MIRc SINE + chr2:69685839-69685874 chr2 69685839 69685874 (CA)n Simple_repeat + chr2:69686375-69686392 chr2 69686375 69686392 (CATTT)n Simple_repeat + chr2:69686695-69686711 chr2 69686695 69686711 (CATTT)n Simple_repeat + chr2:70258290-70258379 chr2 70258290 70258379 MIRb SINE - chr2:70274221-70274338 chr2 70274221 70274338 L2b LINE - chr2:70274808-70274853 chr2 70274808 70274853 G-rich Low_complexity + chr2:70279121-70279188 chr2 70279121 70279188 LTR54 LTR + chr2:70280574-70280635 chr2 70280574 70280635 MIRb SINE - chr2:70281046-70281171 chr2 70281046 70281171 L2d LINE - chr2:70281708-70281741 chr2 70281708 70281741 (AATA)n Simple_repeat + chr2:70282047-70282085 chr2 70282047 70282085 (ATAC)n Simple_repeat + chr2:70282088-70282136 chr2 70282088 70282136 X6b_DNA DNA + chr2:70284251-70284403 chr2 70284251 70284403 FLAM_C SINE + chr2:70286383-70286405 chr2 70286383 70286405 (T)n Simple_repeat + chr2:70298038-70298074 chr2 70298038 70298074 L3 LINE + chr2:70310934-70311096 chr2 70310934 70311096 MIR3 SINE - chr2:70311256-70311295 chr2 70311256 70311295 L3 LINE + chr2:70311772-70311892 chr2 70311772 70311892 MER112 DNA + chr2:70312711-70312887 chr2 70312711 70312887 MIR SINE + chr2:71504531-71504582 chr2 71504531 71504582 MER31A LTR + chr2:71506960-71506983 chr2 71506960 71506983 (TTTG)n Simple_repeat + chr2:71514049-71514078 chr2 71514049 71514078 (TTA)n Simple_repeat + chr2:71523732-71523798 chr2 71523732 71523798 FLAM_C SINE + chr2:71524605-71524641 chr2 71524605 71524641 (TTCC)n Simple_repeat + chr2:71527015-71527061 chr2 71527015 71527061 (CTCTCTGT)n Simple_repeat + chr2:71540423-71540435 chr2 71540423 71540435 (CCTTT)n Simple_repeat + chr2:71540435-71540467 chr2 71540435 71540467 (TCCCCT)n Simple_repeat + chr2:71543025-71543064 chr2 71543025 71543064 (AT)n Simple_repeat + chr2:71543064-71543097 chr2 71543064 71543097 (TG)n Simple_repeat + chr2:71543097-71543115 chr2 71543097 71543115 (AT)n Simple_repeat + chr2:71556355-71556391 chr2 71556355 71556391 (AC)n Simple_repeat + chr2:73978579-73978589 chr2 73978579 73978589 (TTTTGT)n Simple_repeat + chr2:73989104-73989168 chr2 73989104 73989168 MamRep605b LTR? + chr2:74376508-74376704 chr2 74376508 74376704 L1PA16 LINE - chr2:74376704-74376880 chr2 74376704 74376880 MLT1K LTR + chr2:74376995-74377148 chr2 74376995 74377148 AluSx SINE + chr2:76816133-76816182 chr2 76816133 76816182 (GT)n Simple_repeat + chr2:76821015-76821074 chr2 76821015 76821074 (TA)n Simple_repeat + chr2:76827580-76827616 chr2 76827580 76827616 L2 LINE - chr2:76828965-76829007 chr2 76828965 76829007 L2a LINE + chr2:76832573-76832597 chr2 76832573 76832597 A-rich Low_complexity + chr2:76832889-76832914 chr2 76832889 76832914 A-rich Low_complexity + chr2:76834012-76834037 chr2 76834012 76834037 (AC)n Simple_repeat + chr2:76838074-76838099 chr2 76838074 76838099 (TAT)n Simple_repeat + chr2:76840157-76840186 chr2 76840157 76840186 (GTTT)n Simple_repeat + chr2:76841322-76841374 chr2 76841322 76841374 (ATTAAT)n Simple_repeat + chr2:76841921-76841942 chr2 76841921 76841942 (T)n Simple_repeat + chr2:76843389-76843435 chr2 76843389 76843435 (AAC)n Simple_repeat + chr2:76851574-76851619 chr2 76851574 76851619 (TG)n Simple_repeat + chr2:76861219-76861246 chr2 76861219 76861246 (ATTC)n Simple_repeat + chr2:76865525-76865559 chr2 76865525 76865559 (ATTCAA)n Simple_repeat + chr2:76868654-76868709 chr2 76868654 76868709 L2b LINE + chr2:76901955-76901981 chr2 76901955 76901981 (A)n Simple_repeat + chr2:76920627-76920665 chr2 76920627 76920665 (T)n Simple_repeat + chr2:76921182-76921216 chr2 76921182 76921216 (GT)n Simple_repeat + chr2:76926838-76926850 chr2 76926838 76926850 (TTTC)n Simple_repeat + chr2:76949593-76949605 chr2 76949593 76949605 (ATTTT)n Simple_repeat + chr2:76960199-76960221 chr2 76960199 76960221 (T)n Simple_repeat + chr2:82156606-82156641 chr2 82156606 82156641 A-rich Low_complexity + chr2:82221444-82221470 chr2 82221444 82221470 (AAAT)n Simple_repeat + chr2:82228294-82228320 chr2 82228294 82228320 (CAAA)n Simple_repeat + chr2:82231423-82231458 chr2 82231423 82231458 (TG)n Simple_repeat + chr2:85188847-85188940 chr2 85188847 85188940 L2c LINE + chr2:85190325-85190478 chr2 85190325 85190478 L2 LINE - chr2:85193613-85193897 chr2 85193613 85193897 AluSx SINE + chr2:85193897-85193927 chr2 85193897 85193927 (AAAT)n Simple_repeat + chr2:85195171-85195347 chr2 85195171 85195347 L1MC4a LINE - chr2:85196882-85197074 chr2 85196882 85197074 MIRb SINE - chr2:85197162-85197280 chr2 85197162 85197280 MIRb SINE - chr2:87280506-87280768 chr2 87280506 87280768 AluYm1 SINE - chr2:87757844-87757948 chr2 87757844 87757948 MIR SINE + chr2:87758200-87758238 chr2 87758200 87758238 (ATC)n Simple_repeat + chr2:87758648-87758803 chr2 87758648 87758803 Tigger14a DNA - chr2:87759736-87759904 chr2 87759736 87759904 MLT1J LTR - chr2:87759989-87760021 chr2 87759989 87760021 GA-rich Low_complexity + chr2:87762224-87762390 chr2 87762224 87762390 MamGypLTR1b LTR - chr2:87764539-87764634 chr2 87764539 87764634 MIRc SINE + chr2:87767050-87767174 chr2 87767050 87767174 MIRb SINE - chr2:87767430-87767496 chr2 87767430 87767496 L1M5 LINE - chr2:87767534-87767720 chr2 87767534 87767720 L1ME4b LINE - chr2:87771302-87771356 chr2 87771302 87771356 (AAT)n Simple_repeat + chr2:87771649-87771721 chr2 87771649 87771721 (CCCT)n Simple_repeat + chr2:87772470-87772509 chr2 87772470 87772509 (CCAGG)n Simple_repeat + chr2:87772916-87773062 chr2 87772916 87773062 MER45A DNA + chr2:87774320-87774441 chr2 87774320 87774441 MER103C DNA + chr2:87774839-87774888 chr2 87774839 87774888 (GT)n Simple_repeat + chr2:87775334-87775422 chr2 87775334 87775422 OldhAT1 DNA + chr2:87778935-87778963 chr2 87778935 87778963 (TA)n Simple_repeat + chr2:87778963-87779279 chr2 87778963 87779279 AluSx SINE - chr2:87779472-87779626 chr2 87779472 87779626 MIRb SINE + chr2:87780484-87780519 chr2 87780484 87780519 (AC)n Simple_repeat + chr2:87780557-87780597 chr2 87780557 87780597 (T)n Simple_repeat + chr2:87781421-87781732 chr2 87781421 87781732 AluY SINE + chr2:87781924-87782004 chr2 87781924 87782004 (CA)n Simple_repeat + chr2:87784088-87784177 chr2 87784088 87784177 MIRc SINE + chr2:87789037-87789092 chr2 87789037 87789092 L2c LINE + chr2:87789146-87789635 chr2 87789146 87789635 MLT1B LTR + chr2:87789323-87789416 chr2 87789323 87789416 L1PA5 LINE + chr2:87790083-87790124 chr2 87790083 87790124 MIR3 SINE + chr2:87790514-87790538 chr2 87790514 87790538 (AATG)n Simple_repeat + chr2:87796039-87796058 chr2 87796039 87796058 (GT)n Simple_repeat + chr2:87798726-87798782 chr2 87798726 87798782 (ATTTTAT)n Simple_repeat + chr2:87800357-87800455 chr2 87800357 87800455 MIR3 SINE - chr2:87801945-87802081 chr2 87801945 87802081 X17_LINE LINE + chr2:87804686-87804800 chr2 87804686 87804800 MIRc SINE + chr2:87804802-87804843 chr2 87804802 87804843 (AAT)n Simple_repeat + chr2:87805552-87805685 chr2 87805552 87805685 L2b LINE - chr2:87805917-87806213 chr2 87805917 87806213 MER2 DNA - chr2:87810149-87810173 chr2 87810149 87810173 (TTTA)n Simple_repeat + chr2:87813851-87813913 chr2 87813851 87813913 (TTTC)n Simple_repeat + chr2:87814760-87814793 chr2 87814760 87814793 (TTC)n Simple_repeat + chr2:87818491-87818657 chr2 87818491 87818657 MIR3 SINE + chr2:87894016-87894079 chr2 87894016 87894079 (TC)n Simple_repeat + chr2:87904045-87904080 chr2 87904045 87904080 (TTTC)n Simple_repeat + chr2:87906510-87906545 chr2 87906510 87906545 (CAG)n Simple_repeat + chr2:87908067-87908135 chr2 87908067 87908135 MER21A LTR - chr2:87910652-87910679 chr2 87910652 87910679 (TGC)n Simple_repeat + chr2:87914197-87914255 chr2 87914197 87914255 AluJb SINE + chr2:87915749-87915770 chr2 87915749 87915770 (T)n Simple_repeat + chr2:87941705-87941741 chr2 87941705 87941741 (AC)n Simple_repeat + chr2:87945116-87945152 chr2 87945116 87945152 (AC)n Simple_repeat + chr2:87954555-87954573 chr2 87954555 87954573 (A)n Simple_repeat + chr2:87961247-87961266 chr2 87961247 87961266 (AGG)n Simple_repeat + chr2:87961938-87961962 chr2 87961938 87961962 (GAGG)n Simple_repeat + chr2:88746148-88746246 chr2 88746148 88746246 BLACKJACK DNA - chr2:88746422-88746729 chr2 88746422 88746729 MIR SINE + chr2:88746887-88746938 chr2 88746887 88746938 MER102c DNA + chr2:88747564-88747718 chr2 88747564 88747718 MER5A1 DNA + chr2:88748710-88748758 chr2 88748710 88748758 FLAM_C SINE + chr2:95874679-95874812 chr2 95874679 95874812 L2d2 LINE - chr2:95879320-95879378 chr2 95879320 95879378 (TTTTCTC)n Simple_repeat + chr2:95882422-95886352 chr2 95882422 95886352 L1MDa LINE - chr2:95882689-95883713 chr2 95882689 95883713 MLT1A-int LTR - chr2:95883685-95884713 chr2 95883685 95884713 MLT1B-int LTR - chr2:95884741-95885052 chr2 95884741 95885052 AluYk2 SINE - chr2:95886793-95886957 chr2 95886793 95886957 MIRc SINE + chr2:95887657-95887757 chr2 95887657 95887757 (CTT)n Simple_repeat + chr2:95887774-95887865 chr2 95887774 95887865 L1MD2 LINE - chr2:96678495-96678582 chr2 96678495 96678582 CR1_Mam LINE + chr2:96678599-96678695 chr2 96678599 96678695 L2b LINE - chr2:96678983-96679240 chr2 96678983 96679240 L2c LINE + chr2:96679855-96679976 chr2 96679855 96679976 MIR3 SINE - chr2:96684561-96684612 chr2 96684561 96684612 MIR SINE + chr2:96937756-96937932 chr2 96937756 96937932 MER106A DNA + chr2:96938087-96938161 chr2 96938087 96938161 Charlie1a DNA + chr2:96938159-96938220 chr2 96938159 96938220 Charlie1a DNA + chr2:96938218-96939659 chr2 96938218 96939659 Charlie1a DNA + chr2:96938272-96938563 chr2 96938272 96938563 AluSp SINE + chr2:96939120-96939424 chr2 96939120 96939424 AluSg4 SINE + chr2:96939664-96939802 chr2 96939664 96939802 AluSz6 SINE + chr2:96939856-96939894 chr2 96939856 96939894 MLT1A LTR + chr2:96995290-96995313 chr2 96995290 96995313 (T)n Simple_repeat + chr2:97499654-97499942 chr2 97499654 97499942 AluSx1 SINE - chr2:97499946-97500031 chr2 97499946 97500031 MER5B DNA - chr2:97500386-97500573 chr2 97500386 97500573 L1MD3 LINE - chr2:98081907-98081923 chr2 98081907 98081923 SVA_E Retroposon - chr2:98127600-98127646 chr2 98127600 98127646 (TTCTCT)n Simple_repeat + chr2:98138176-98138229 chr2 98138176 98138229 MER47C DNA + chr2:98154282-98154318 chr2 98154282 98154318 (TTTCTC)n Simple_repeat + chr2:98158185-98158263 chr2 98158185 98158263 MER5A1 DNA + chr2:98161963-98162016 chr2 98161963 98162016 MER5A1 DNA + chr2:98162340-98162392 chr2 98162340 98162392 (ATAC)n Simple_repeat + chr2:98169717-98169748 chr2 98169717 98169748 (AAAT)n Simple_repeat + chr2:98193517-98193560 chr2 98193517 98193560 (TAAT)n Simple_repeat + chr2:98194025-98194084 chr2 98194025 98194084 U6 snRNA - chr2:98197313-98197419 chr2 98197313 98197419 L2c LINE + chr2:98200082-98200120 chr2 98200082 98200120 (TGT)n Simple_repeat + chr2:98201155-98201196 chr2 98201155 98201196 (TTAT)n Simple_repeat + chr2:98285072-98285113 chr2 98285072 98285113 Tigger2b_Pri DNA + chr3:10060879-10061047 chr3 10060879 10061047 MIRb SINE + chr3:10063428-10063526 chr3 10063428 10063526 L2a LINE - chr3:10063521-10063612 chr3 10063521 10063612 L2b LINE + chr3:10063616-10063733 chr3 10063616 10063733 MIRc SINE + chr3:10064194-10064243 chr3 10064194 10064243 (TG)n Simple_repeat + chr3:10064264-10064294 chr3 10064264 10064294 (GT)n Simple_repeat + chr3:10064301-10064358 chr3 10064301 10064358 AluJo SINE - chr3:10064358-10064478 chr3 10064358 10064478 SVA_A Retroposon + chr3:10065533-10065603 chr3 10065533 10065603 L1MB7 LINE + chr3:10065885-10065938 chr3 10065885 10065938 Alu SINE + chr3:10066149-10066275 chr3 10066149 10066275 AluJo SINE + chr3:10067116-10067152 chr3 10067116 10067152 (AAATT)n Simple_repeat + chr3:101399351-101399643 chr3 101399351 101399643 AluJb SINE - chr3:10173291-10173301 chr3 10173291 10173301 (TTTA)n Simple_repeat + chr3:10194544-10195142 chr3 10194544 10195142 AluSq2 SINE + chr3:10194679-10194985 chr3 10194679 10194985 AluYk3 SINE + chr3:108261039-108261407 chr3 108261039 108261407 L1MC2 LINE - chr3:108264535-108264568 chr3 108264535 108264568 (ACAC)n Simple_repeat + chr3:108266607-108266788 chr3 108266607 108266788 L1MC4 LINE + chr3:108266848-108267254 chr3 108266848 108267254 L1MEf LINE + chr3:108267284-108267456 chr3 108267284 108267456 MER58A DNA + chr3:108268464-108268611 chr3 108268464 108268611 MER3 DNA - chr3:109058107-109058260 chr3 109058107 109058260 MIR SINE + chr3:109058329-109058624 chr3 109058329 109058624 AluJb SINE + chr3:109058689-109058825 chr3 109058689 109058825 FLAM_C SINE - chr3:109059440-109059469 chr3 109059440 109059469 (TCCC)n Simple_repeat + chr3:109061663-109061828 chr3 109061663 109061828 MER91A DNA - chr3:109062835-109062931 chr3 109062835 109062931 AluJb SINE - chr3:109067412-109067481 chr3 109067412 109067481 MER3 DNA + chr3:109069321-109069353 chr3 109069321 109069353 (ATGA)n Simple_repeat + chr3:109069892-109069917 chr3 109069892 109069917 (ATTT)n Simple_repeat + chr3:109070289-109070364 chr3 109070289 109070364 L1MC5a LINE - chr3:109072827-109072877 chr3 109072827 109072877 FRAM SINE - chr3:109089709-109089744 chr3 109089709 109089744 (TCTT)n Simple_repeat + chr3:112082108-112082192 chr3 112082108 112082192 L1MC4 LINE - chr3:112144989-112145028 chr3 112144989 112145028 A-rich Low_complexity + chr3:113351550-113351746 chr3 113351550 113351746 7SLRNA srpRNA + chr3:113435047-113435116 chr3 113435047 113435116 L2a LINE + chr3:115039723-115039752 chr3 115039723 115039752 (TTG)n Simple_repeat + chr3:119386668-119386697 chr3 119386668 119386697 A-rich Low_complexity + chr3:119387112-119387175 chr3 119387112 119387175 L3 LINE + chr3:119814886-119814960 chr3 119814886 119814960 MamTip2b DNA + chr3:119815069-119815371 chr3 119815069 119815371 MER102c DNA - chr3:119816230-119816294 chr3 119816230 119816294 L2c LINE - chr3:119816380-119816597 chr3 119816380 119816597 L1ME4c LINE + chr3:119816866-119816994 chr3 119816866 119816994 LTR90A LTR + chr3:119817853-119817871 chr3 119817853 119817871 (A)n Simple_repeat + chr3:12188688-12188728 chr3 12188688 12188728 (GT)n Simple_repeat + chr3:12192355-12192502 chr3 12192355 12192502 MIRb SINE + chr3:12192555-12192677 chr3 12192555 12192677 L2d2 LINE + chr3:12208090-12208170 chr3 12208090 12208170 MIRc SINE - chr3:12220163-12220204 chr3 12220163 12220204 MamTip2 DNA + chr3:12221744-12221763 chr3 12221744 12221763 (TTTA)n Simple_repeat + chr3:124464215-124464355 chr3 124464215 124464355 AluSx3 SINE - chr3:124464712-124464897 chr3 124464712 124464897 MER5A DNA - chr3:124465602-124465644 chr3 124465602 124465644 (TG)n Simple_repeat + chr3:124465847-124466063 chr3 124465847 124466063 AluJb SINE - chr3:124466276-124466541 chr3 124466276 124466541 MLT1H LTR + chr3:128883297-128883313 chr3 128883297 128883313 GA-rich Low_complexity + chr3:128887075-128887140 chr3 128887075 128887140 MIR3 SINE + chr3:128967981-128968019 chr3 128967981 128968019 A-rich Low_complexity + chr3:129106807-129106942 chr3 129106807 129106942 FLAM_C SINE - chr3:129107300-129107345 chr3 129107300 129107345 (GA)n Simple_repeat + chr3:129107345-129107368 chr3 129107345 129107368 (TG)n Simple_repeat + chr3:129107387-129107590 chr3 129107387 129107590 MIRb SINE + chr3:129108227-129108518 chr3 129108227 129108518 LTR14A LTR + chr3:129108628-129108762 chr3 129108628 129108762 X7C_LINE LINE + chr3:129112566-129112674 chr3 129112566 129112674 MIRb SINE + chr3:129113904-129114023 chr3 129113904 129114023 AluSc8 SINE - chr3:129114055-129114218 chr3 129114055 129114218 FAM SINE + chr3:129115144-129115168 chr3 129115144 129115168 (T)n Simple_repeat + chr3:129115557-129115598 chr3 129115557 129115598 MIR SINE + chr3:129116335-129116433 chr3 129116335 129116433 MIRc SINE + chr3:129837116-129837150 chr3 129837116 129837150 (CA)n Simple_repeat + chr3:131174550-131174684 chr3 131174550 131174684 MER5B DNA - chr3:131177526-131177571 chr3 131177526 131177571 A-rich Low_complexity + chr3:131178279-131179335 chr3 131178279 131179335 Tigger1 DNA + chr3:131179390-131179942 chr3 131179390 131179942 L1M5 LINE - chr3:131180667-131180977 chr3 131180667 131180977 AluJo SINE + chr3:139109073-139109097 chr3 139109073 139109097 (GT)n Simple_repeat + chr3:139109738-139109755 chr3 139109738 139109755 (T)n Simple_repeat + chr3:139110522-139110586 chr3 139110522 139110586 L2a LINE - chr3:139112372-139112414 chr3 139112372 139112414 A-rich Low_complexity + chr3:139145621-139145648 chr3 139145621 139145648 (TG)n Simple_repeat + chr3:141876767-141876793 chr3 141876767 141876793 (GTT)n Simple_repeat + chr3:141877092-141877107 chr3 141877092 141877107 (GTT)n Simple_repeat + chr3:141877918-141877975 chr3 141877918 141877975 AluJr SINE - chr3:141878990-141879125 chr3 141878990 141879125 FLAM_C SINE - chr3:141879927-141880216 chr3 141879927 141880216 AluSp SINE - chr3:141880370-141880430 chr3 141880370 141880430 L2c LINE - chr3:141880631-141880660 chr3 141880631 141880660 (ATTG)n Simple_repeat + chr3:141881111-141881316 chr3 141881111 141881316 MER20 DNA + chr3:141882555-141882687 chr3 141882555 141882687 AluJr SINE + chr3:14252311-14252333 chr3 14252311 14252333 (T)n Simple_repeat + chr3:14443214-14443246 chr3 14443214 14443246 (AG)n Simple_repeat + chr3:149681117-149681281 chr3 149681117 149681281 L1M5 LINE - chr3:14984925-14985007 chr3 14984925 14985007 L2b LINE - chr3:14985198-14985301 chr3 14985198 14985301 MER5A DNA - chr3:14986072-14986508 chr3 14986072 14986508 FLAM_C SINE + chr3:14986186-14986479 chr3 14986186 14986479 AluSq2 SINE - chr3:14986579-14987797 chr3 14986579 14987797 HSMAR1 DNA - chr3:150259064-150259090 chr3 150259064 150259090 (A)n Simple_repeat + chr3:152559052-152559087 chr3 152559052 152559087 (TG)n Simple_repeat + chr3:154979723-154980355 chr3 154979723 154980355 MLT2B3 LTR - chr3:154979761-154979806 chr3 154979761 154979806 (GGAT)n Simple_repeat + chr3:154981960-154981995 chr3 154981960 154981995 (CTGTTG)n Simple_repeat + chr3:154988110-154988261 chr3 154988110 154988261 MIRb SINE - chr3:154988377-154999769 chr3 154988377 154999769 L1PBa LINE + chr3:154990526-154992223 chr3 154990526 154992223 L1PB LINE + chr3:154990804-154991100 chr3 154990804 154991100 AluSq2 SINE + chr3:155008182-155008315 chr3 155008182 155008315 FLAM_C SINE - chr3:156257046-156257215 chr3 156257046 156257215 MIR3 SINE - chr3:156257761-156257836 chr3 156257761 156257836 L1PA8 LINE + chr3:158411205-158411354 chr3 158411205 158411354 MIR3 SINE - chr3:15902542-15902565 chr3 15902542 15902565 (A)n Simple_repeat + chr3:15916373-15916421 chr3 15916373 15916421 AluJr SINE + chr3:163904230-163904242 chr3 163904230 163904242 (AT)n Simple_repeat + chr3:167387504-167387526 chr3 167387504 167387526 (TTG)n Simple_repeat + chr3:167389499-167389559 chr3 167389499 167389559 L2a LINE - chr3:167400138-167400328 chr3 167400138 167400328 MIRb SINE + chr3:167400296-167400333 chr3 167400296 167400333 L2a LINE + chr3:167972029-167972056 chr3 167972029 167972056 (CTTA)n Simple_repeat + chr3:167998313-167998338 chr3 167998313 167998338 (AAACA)n Simple_repeat + chr3:168004144-168004164 chr3 168004144 168004164 (AAC)n Simple_repeat + chr3:168008227-168008254 chr3 168008227 168008254 (AATAT)n Simple_repeat + chr3:168009776-168009799 chr3 168009776 168009799 (TG)n Simple_repeat + chr3:168010050-168010069 chr3 168010050 168010069 MIR SINE + chr3:168016468-168016494 chr3 168016468 168016494 (TTTTC)n Simple_repeat + chr3:168239577-168239595 chr3 168239577 168239595 (T)n Simple_repeat + chr3:168241056-168241109 chr3 168241056 168241109 (TG)n Simple_repeat + chr3:168249219-168249254 chr3 168249219 168249254 (TC)n Simple_repeat + chr3:168249254-168249274 chr3 168249254 168249274 (TG)n Simple_repeat + chr3:168267741-168267751 chr3 168267741 168267751 (TGTTTTT)n Simple_repeat + chr3:168527227-168527237 chr3 168527227 168527237 (AATT)n Simple_repeat + chr3:169483954-169483996 chr3 169483954 169483996 (CTCC)n Simple_repeat + chr3:169803475-169803660 chr3 169803475 169803660 MER20 DNA - chr3:169803939-169804062 chr3 169803939 169804062 MER112 DNA - chr3:176623961-176623974 chr3 176623961 176623974 (TTGTTTT)n Simple_repeat + chr3:18083250-18083278 chr3 18083250 18083278 (GAGTT)n Simple_repeat + chr3:181419344-181419364 chr3 181419344 181419364 (ATT)n Simple_repeat + chr3:181432898-181432925 chr3 181432898 181432925 (T)n Simple_repeat + chr3:181433221-181433271 chr3 181433221 181433271 (T)n Simple_repeat + chr3:181434075-181434127 chr3 181434075 181434127 (AT)n Simple_repeat + chr3:181436037-181436071 chr3 181436037 181436071 (ATTT)n Simple_repeat + chr3:181438574-181438607 chr3 181438574 181438607 (TTGTTT)n Simple_repeat + chr3:181439960-181439977 chr3 181439960 181439977 (TG)n Simple_repeat + chr3:181441884-181441923 chr3 181441884 181441923 (CA)n Simple_repeat + chr3:181441923-181441931 chr3 181441923 181441931 (CTCACA)n Simple_repeat + chr3:181442587-181442609 chr3 181442587 181442609 (T)n Simple_repeat + chr3:181442826-181442876 chr3 181442826 181442876 (T)n Simple_repeat + chr3:181444779-181444808 chr3 181444779 181444808 (T)n Simple_repeat + chr3:181446014-181446045 chr3 181446014 181446045 (TG)n Simple_repeat + chr3:181449141-181449181 chr3 181449141 181449181 GA-rich Low_complexity + chr3:181454465-181454508 chr3 181454465 181454508 (TTTTG)n Simple_repeat + chr3:181458105-181458157 chr3 181458105 181458157 (CA)n Simple_repeat + chr3:183169847-183170142 chr3 183169847 183170142 AluSz6 SINE - chr3:183170482-183170783 chr3 183170482 183170783 AluSx1 SINE - chr3:183171151-183171583 chr3 183171151 183171583 Tigger2a DNA - chr3:183172168-183172468 chr3 183172168 183172468 AluSq SINE - chr3:183172469-183172542 chr3 183172469 183172542 MER3 DNA + chr3:18489905-18489927 chr3 18489905 18489927 (AT)n Simple_repeat + chr3:185544697-185544780 chr3 185544697 185544780 MIRb SINE + chr3:185545326-185545348 chr3 185545326 185545348 (TTG)n Simple_repeat + chr3:185546395-185546461 chr3 185546395 185546461 MIRc SINE - chr3:185547381-185547432 chr3 185547381 185547432 MIR3 SINE + chr3:185631440-185631603 chr3 185631440 185631603 Tigger2a DNA - chr3:185632103-185632132 chr3 185632103 185632132 (CA)n Simple_repeat + chr3:190142438-190142703 chr3 190142438 190142703 AluSx1 SINE + chr3:191632847-191632884 chr3 191632847 191632884 (TGTTTT)n Simple_repeat + chr3:191634817-191634934 chr3 191634817 191634934 MIRb SINE + chr3:191641081-191641293 chr3 191641081 191641293 L1PBa LINE - chr3:195364848-195364949 chr3 195364848 195364949 MIRb SINE + chr3:195377591-195377623 chr3 195377591 195377623 (CTT)n Simple_repeat + chr3:195391755-195392062 chr3 195391755 195392062 AluSx SINE - chr3:195392405-195392587 chr3 195392405 195392587 MER3 DNA + chr3:195393225-195393282 chr3 195393225 195393282 MIRb SINE + chr3:195393527-195394747 chr3 195393527 195394747 L1MA9 LINE + chr3:197339366-197339394 chr3 197339366 197339394 (AATAT)n Simple_repeat + chr3:197339404-197340074 chr3 197339404 197340074 L1MA7 LINE + chr3:197339538-197339687 chr3 197339538 197339687 FLAM_C SINE - chr3:197339695-197339818 chr3 197339695 197339818 L1PA16 LINE + chr3:197339828-197339851 chr3 197339828 197339851 (AAAT)n Simple_repeat + chr3:197340124-197340848 chr3 197340124 197340848 LTR8A LTR - chr3:197344955-197345213 chr3 197344955 197345213 L1MA9 LINE - chr3:197345228-197346168 chr3 197345228 197346168 L1MA9 LINE - chr3:197346409-197346470 chr3 197346409 197346470 MIRb SINE - chr3:197347113-197347290 chr3 197347113 197347290 MER3 DNA - chr3:197347991-197348271 chr3 197347991 197348271 AluJr4 SINE - chr3:197902914-197902975 chr3 197902914 197902975 (GATA)n Simple_repeat + chr3:197905195-197905230 chr3 197905195 197905230 (TTTGTT)n Simple_repeat + chr3:197906530-197906651 chr3 197906530 197906651 AluSx SINE - chr3:197908996-197909079 chr3 197908996 197909079 MIR1_Amn SINE + chr3:197909339-197909390 chr3 197909339 197909390 AluSq2 SINE + chr3:197921019-197921036 chr3 197921019 197921036 (A)n Simple_repeat + chr3:197923008-197923115 chr3 197923008 197923115 Charlie29b DNA + chr3:197925050-197925191 chr3 197925050 197925191 L1ME4b LINE - chr3:197925533-197925653 chr3 197925533 197925653 AluJb SINE + chr3:197943834-197943981 chr3 197943834 197943981 FLAM_C SINE + chr3:197943983-197944149 chr3 197943983 197944149 L1ME4c LINE - chr3:32613383-32613633 chr3 32613383 32613633 MIRb SINE + chr3:32858143-32858174 chr3 32858143 32858174 (GAG)n Simple_repeat + chr3:32942304-32942440 chr3 32942304 32942440 L1MC LINE + chr3:39447556-39447576 chr3 39447556 39447576 (A)n Simple_repeat + chr3:40490099-40490137 chr3 40490099 40490137 (ATAAAA)n Simple_repeat + chr3:40492319-40492396 chr3 40492319 40492396 L2a LINE - chr3:40492902-40492938 chr3 40492902 40492938 (CA)n Simple_repeat + chr3:40503864-40504166 chr3 40503864 40504166 AluYk4 SINE - chr3:40507889-40508011 chr3 40507889 40508011 AluSx4 SINE + chr3:40508103-40508187 chr3 40508103 40508187 MIRb SINE + chr3:40560254-40563144 chr3 40560254 40563144 L1ME1 LINE - chr3:40562190-40562362 chr3 40562190 40562362 FAM SINE - chr3:42824273-42825160 chr3 42824273 42825160 L1M7 LINE + chr3:42824829-42825110 chr3 42824829 42825110 AluSz6 SINE + chr3:42825111-42825136 chr3 42825111 42825136 (AAAC)n Simple_repeat + chr3:42825286-42825585 chr3 42825286 42825585 AluSx SINE + chr3:44061529-44061556 chr3 44061529 44061556 GA-rich Low_complexity + chr3:44111650-44111680 chr3 44111650 44111680 (CCACC)n Simple_repeat + chr3:44129003-44129035 chr3 44129003 44129035 (AAAC)n Simple_repeat + chr3:44135923-44135974 chr3 44135923 44135974 (AC)n Simple_repeat + chr3:44140166-44140199 chr3 44140166 44140199 A-rich Low_complexity + chr3:44155399-44155514 chr3 44155399 44155514 Charlie4z DNA - chr3:44533242-44533640 chr3 44533242 44533640 MER95 LTR - chr3:44534535-44535590 chr3 44534535 44535590 MLT-int LTR + chr3:44534733-44534981 chr3 44534733 44534981 AluJo SINE - chr3:44536691-44536851 chr3 44536691 44536851 MIR SINE - chr3:44705473-44705605 chr3 44705473 44705605 Charlie4z DNA - chr3:44709072-44709116 chr3 44709072 44709116 L1ME4a LINE + chr3:45728128-45728156 chr3 45728128 45728156 (AT)n Simple_repeat + chr3:45729715-45729742 chr3 45729715 45729742 (ATTG)n Simple_repeat + chr3:46624677-46624869 chr3 46624677 46624869 AluJb SINE - chr3:46624922-46625238 chr3 46624922 46625238 L1MB4 LINE - chr3:46625626-46625728 chr3 46625626 46625728 L1M5 LINE + chr3:46625866-46626174 chr3 46625866 46626174 AluSz SINE + chr3:46626371-46626529 chr3 46626371 46626529 LTR16A LTR - chr3:46626609-46626912 chr3 46626609 46626912 ERV3-16A3_I-int LTR - chr3:46626912-46627038 chr3 46626912 46627038 LTR16 LTR - chr3:46627173-46627620 chr3 46627173 46627620 Tigger2a DNA - chr3:47625259-47625281 chr3 47625259 47625281 (AGCT)n Simple_repeat + chr3:49024244-49024297 chr3 49024244 49024297 L2b LINE - chr3:49024360-49024421 chr3 49024360 49024421 MIR SINE - chr3:49060935-49061095 chr3 49060935 49061095 AluSg4 SINE - chr3:49061095-49061391 chr3 49061095 49061391 AluSz SINE - chr3:49895221-49895240 chr3 49895221 49895240 (ACC)n Simple_repeat + chr3:51572887-51572926 chr3 51572887 51572926 (CGGCG)n Simple_repeat + chr3:52744494-52744787 chr3 52744494 52744787 AluJb SINE + chr3:52933312-52933460 chr3 52933312 52933460 Plat_L3 LINE + chr3:52934338-52934368 chr3 52934338 52934368 (A)n Simple_repeat + chr3:52934368-52934391 chr3 52934368 52934391 A-rich Low_complexity + chr3:53900143-53900426 chr3 53900143 53900426 AluJr SINE + chr3:58412271-58412559 chr3 58412271 58412559 AluJb SINE - chr3:61547424-61547460 chr3 61547424 61547460 (CTCCC)n Simple_repeat + chr3:61547523-61547581 chr3 61547523 61547581 (CGCCG)n Simple_repeat + chr3:62287696-62287844 chr3 62287696 62287844 L1M5 LINE + chr3:62290097-62290127 chr3 62290097 62290127 (AC)n Simple_repeat + chr3:62299757-62299822 chr3 62299757 62299822 MER47C DNA + chr3:62299817-62299908 chr3 62299817 62299908 Tigger5b DNA + chr3:62299930-62300040 chr3 62299930 62300040 MER39 LTR + chr3:62302250-62302413 chr3 62302250 62302413 MIRb SINE + chr3:62940050-62940141 chr3 62940050 62940141 L2a LINE - chr3:62940160-62940234 chr3 62940160 62940234 MIRb SINE + chr3:62941269-62941367 chr3 62941269 62941367 LTR16C LTR - chr3:62943723-62943756 chr3 62943723 62943756 (TG)n Simple_repeat + chr3:62945667-62945790 chr3 62945667 62945790 L1PA16 LINE + chr3:62947180-62947297 chr3 62947180 62947297 L2a LINE - chr3:62947473-62947570 chr3 62947473 62947570 UCON48 Unknown - chr3:62948548-62948650 chr3 62948548 62948650 Tigger23a DNA - chr3:62949938-62950090 chr3 62949938 62950090 MIRb SINE + chr3:62951811-62952006 chr3 62951811 62952006 MIRb SINE + chr3:62953218-62953262 chr3 62953218 62953262 A-rich Low_complexity + chr3:62955102-62955147 chr3 62955102 62955147 L2b LINE + chr3:62955725-62955854 chr3 62955725 62955854 Charlie5 DNA + chr3:62956991-62957111 chr3 62956991 62957111 MIR3 SINE + chr3:62957713-62957878 chr3 62957713 62957878 L2d2 LINE - chr3:62957848-62957915 chr3 62957848 62957915 MIRb SINE - chr3:62958105-62958138 chr3 62958105 62958138 (TG)n Simple_repeat + chr3:62959819-62959892 chr3 62959819 62959892 (CTATA)n Simple_repeat + chr3:62960872-62960925 chr3 62960872 62960925 (TG)n Simple_repeat + chr3:62962176-62962266 chr3 62962176 62962266 L2a LINE - chr3:62962995-62963023 chr3 62962995 62963023 (T)n Simple_repeat + chr3:62963695-62963734 chr3 62963695 62963734 (AATAT)n Simple_repeat + chr3:62964298-62964419 chr3 62964298 62964419 L2c LINE + chr3:62966327-62966417 chr3 62966327 62966417 L2c LINE - chr3:62967280-62967399 chr3 62967280 62967399 Eulor4 Unknown + chr3:62969161-62969219 chr3 62969161 62969219 A-rich Low_complexity + chr3:62969290-62969317 chr3 62969290 62969317 (ATGA)n Simple_repeat + chr3:62969586-62969613 chr3 62969586 62969613 (ATGA)n Simple_repeat + chr3:62970522-62970979 chr3 62970522 62970979 MLT1H LTR + chr3:62971392-62971593 chr3 62971392 62971593 MIR SINE - chr3:62971595-62971631 chr3 62971595 62971631 (AC)n Simple_repeat + chr3:62973403-62973598 chr3 62973403 62973598 MIRb SINE - chr3:62975636-62975861 chr3 62975636 62975861 L2a LINE + chr3:62979036-62979084 chr3 62979036 62979084 L2b LINE + chr3:62979867-62979896 chr3 62979867 62979896 (TATTT)n Simple_repeat + chr3:62980519-62980698 chr3 62980519 62980698 MER5B DNA - chr3:62981377-62981479 chr3 62981377 62981479 MER91C DNA - chr3:62982040-62982107 chr3 62982040 62982107 G-rich Low_complexity + chr3:62982576-62982674 chr3 62982576 62982674 (ATTT)n Simple_repeat + chr3:62984406-62984679 chr3 62984406 62984679 Charlie8 DNA - chr3:62984774-62984853 chr3 62984774 62984853 MIRb SINE + chr3:62984910-62985056 chr3 62984910 62985056 MIR3 SINE - chr3:62985428-62985467 chr3 62985428 62985467 A-rich Low_complexity + chr3:62986706-62986822 chr3 62986706 62986822 MIRb SINE - chr3:62987122-62987273 chr3 62987122 62987273 L3 LINE - chr3:62990667-62990738 chr3 62990667 62990738 MER53 DNA - chr3:62991597-62991651 chr3 62991597 62991651 GA-rich Low_complexity + chr3:62992730-62992910 chr3 62992730 62992910 AluSg SINE - chr3:62993182-62993383 chr3 62993182 62993383 MIR SINE + chr3:62993657-62993823 chr3 62993657 62993823 MIRb SINE + chr3:62994188-62994308 chr3 62994188 62994308 MIRc SINE - chr3:62994454-62994527 chr3 62994454 62994527 L2a LINE - chr3:63004996-63005218 chr3 63004996 63005218 MER30 DNA - chr3:63008994-63009118 chr3 63008994 63009118 FRAM SINE - chr3:63009862-63009904 chr3 63009862 63009904 (TCCC)n Simple_repeat + chr3:63010463-63010485 chr3 63010463 63010485 (GAAT)n Simple_repeat + chr3:63010904-63011086 chr3 63010904 63011086 FRAM SINE - chr3:63014832-63014921 chr3 63014832 63014921 MIR SINE - chr3:63015876-63016003 chr3 63015876 63016003 AluJr SINE + chr3:63016016-63016101 chr3 63016016 63016101 AluJb SINE + chr3:63016103-63016153 chr3 63016103 63016153 GA-rich Low_complexity + chr3:63016536-63016672 chr3 63016536 63016672 L2d2 LINE + chr3:63018079-63018279 chr3 63018079 63018279 MIRb SINE + chr3:63018287-63018360 chr3 63018287 63018360 Tigger3c DNA + chr3:63022762-63022971 chr3 63022762 63022971 MIR SINE - chr3:63022992-63023171 chr3 63022992 63023171 MIRc SINE + chr3:63025495-63025529 chr3 63025495 63025529 (T)n Simple_repeat + chr3:63026352-63026518 chr3 63026352 63026518 MER5B DNA + chr3:63028004-63028223 chr3 63028004 63028223 MIRb SINE - chr3:63031813-63031951 chr3 63031813 63031951 MIRb SINE - chr3:63031981-63032061 chr3 63031981 63032061 MIR3 SINE + chr3:63035198-63035323 chr3 63035198 63035323 L2a LINE - chr3:63035444-63035465 chr3 63035444 63035465 (TG)n Simple_repeat + chr3:63035836-63035974 chr3 63035836 63035974 MIRb SINE + chr3:63035984-63036129 chr3 63035984 63036129 Tigger4a DNA + chr3:63036995-63037240 chr3 63036995 63037240 MIR SINE - chr3:63037584-63037714 chr3 63037584 63037714 AmnSINE2 SINE + chr3:63040108-63040302 chr3 63040108 63040302 MIRb SINE - chr3:63041828-63041992 chr3 63041828 63041992 Charlie8 DNA + chr3:63042177-63042216 chr3 63042177 63042216 (T)n Simple_repeat + chr3:63042692-63042895 chr3 63042692 63042895 MLT1L LTR - chr3:63042903-63043008 chr3 63042903 63043008 MER102c DNA + chr3:63043368-63043407 chr3 63043368 63043407 GA-rich Low_complexity + chr3:63044191-63044333 chr3 63044191 63044333 MLT1H LTR - chr3:63044755-63044921 chr3 63044755 63044921 MamTip2 DNA - chr3:63045750-63045950 chr3 63045750 63045950 Tigger12c DNA + chr3:63046011-63046236 chr3 63046011 63046236 MIR SINE - chr3:63046272-63046432 chr3 63046272 63046432 Tigger12c DNA + chr3:63046419-63046623 chr3 63046419 63046623 Tigger12A DNA + chr3:63047472-63047596 chr3 63047472 63047596 MLT1N2 LTR + chr3:63047882-63047926 chr3 63047882 63047926 (AC)n Simple_repeat + chr3:63048114-63048205 chr3 63048114 63048205 Eulor1 DNA + chr3:63048131-63048218 chr3 63048131 63048218 Eulor1 DNA - chr3:63048766-63049193 chr3 63048766 63049193 LTR16C LTR - chr3:63049403-63049584 chr3 63049403 63049584 MER5A DNA + chr3:63050833-63050948 chr3 63050833 63050948 MIRb SINE + chr3:63051987-63052034 chr3 63051987 63052034 A-rich Low_complexity + chr3:63052214-63052457 chr3 63052214 63052457 MIR SINE + chr3:63052573-63052801 chr3 63052573 63052801 MIR SINE - chr3:63053316-63053483 chr3 63053316 63053483 MER5A1 DNA + chr3:63055206-63055394 chr3 63055206 63055394 MIR SINE - chr3:63055450-63055472 chr3 63055450 63055472 (A)n Simple_repeat + chr3:63055819-63056033 chr3 63055819 63056033 MIRb SINE - chr3:63056646-63056810 chr3 63056646 63056810 MER5A DNA + chr3:63056861-63056991 chr3 63056861 63056991 L2b LINE + chr3:63057286-63057431 chr3 63057286 63057431 L3b LINE + chr3:63058654-63058742 chr3 63058654 63058742 L2a LINE + chr3:63058793-63058839 chr3 63058793 63058839 GA-rich Low_complexity + chr3:63058859-63058907 chr3 63058859 63058907 MER5B DNA + chr3:63061662-63061693 chr3 63061662 63061693 (TG)n Simple_repeat + chr3:63062203-63062258 chr3 63062203 63062258 L2c LINE - chr3:63062793-63062956 chr3 63062793 63062956 Zaphod3 DNA - chr3:63063079-63063219 chr3 63063079 63063219 MIRb SINE - chr3:63063225-63063410 chr3 63063225 63063410 MER20 DNA - chr3:63063575-63063739 chr3 63063575 63063739 MER5A DNA + chr3:63063747-63063950 chr3 63063747 63063950 MER5B DNA + chr3:63064009-63064108 chr3 63064009 63064108 MIR3 SINE + chr3:63064159-63064229 chr3 63064159 63064229 MIR SINE + chr3:63064931-63065072 chr3 63064931 63065072 MER5A DNA - chr3:63065141-63065216 chr3 63065141 63065216 MIR1_Amn SINE + chr3:63065249-63065365 chr3 63065249 63065365 L2c LINE + chr3:63066394-63066459 chr3 63066394 63066459 (TA)n Simple_repeat + chr3:63067493-63067627 chr3 63067493 63067627 MIR SINE - chr3:63070017-63070062 chr3 63070017 63070062 MER5A DNA - chr3:63070340-63070538 chr3 63070340 63070538 L2a LINE - chr3:63070650-63070685 chr3 63070650 63070685 (GATA)n Simple_repeat + chr3:63071167-63071497 chr3 63071167 63071497 AluJr SINE - chr3:63071636-63071805 chr3 63071636 63071805 MIRb SINE + chr3:63072657-63072858 chr3 63072657 63072858 L3 LINE - chr3:63072889-63073025 chr3 63072889 63073025 MIRb SINE + chr3:63073693-63073913 chr3 63073693 63073913 L1ME3G LINE - chr3:63074880-63074941 chr3 63074880 63074941 MIRc SINE - chr3:63075122-63075154 chr3 63075122 63075154 (A)n Simple_repeat + chr3:63076128-63076320 chr3 63076128 63076320 MamRep4096 DNA - chr3:63076648-63076686 chr3 63076648 63076686 tRNA-Met tRNA - chr3:63078651-63078741 chr3 63078651 63078741 L2b LINE + chr3:63079120-63079314 chr3 63079120 63079314 MIRc SINE - chr3:63081202-63081445 chr3 63081202 63081445 MIRb SINE - chr3:63084551-63084629 chr3 63084551 63084629 (TA)n Simple_repeat + chr3:63085474-63085618 chr3 63085474 63085618 MIRc SINE + chr3:63086159-63086238 chr3 63086159 63086238 (TA)n Simple_repeat + chr3:63087085-63087216 chr3 63087085 63087216 MamRep1527 LTR + chr3:63087936-63088145 chr3 63087936 63088145 MIR SINE + chr3:63088809-63088899 chr3 63088809 63088899 MIRb SINE + chr3:63089695-63089813 chr3 63089695 63089813 MIR3 SINE - chr3:63092688-63092825 chr3 63092688 63092825 MIRb SINE - chr3:63093195-63093361 chr3 63093195 63093361 MER5A DNA - chr3:63094269-63094408 chr3 63094269 63094408 L1ME4a LINE + chr3:63095170-63095339 chr3 63095170 63095339 MIRb SINE + chr3:63096019-63096113 chr3 63096019 63096113 MER58C DNA + chr3:63096114-63096145 chr3 63096114 63096145 (GAG)n Simple_repeat + chr3:63096183-63096242 chr3 63096183 63096242 MER58A DNA + chr3:63096268-63096335 chr3 63096268 63096335 MER5A DNA + chr3:63096681-63096890 chr3 63096681 63096890 MER20 DNA - chr3:63097607-63097653 chr3 63097607 63097653 (TCTT)n Simple_repeat + chr3:63098903-63099047 chr3 63098903 63099047 L2a LINE - chr3:63099874-63100060 chr3 63099874 63100060 MIRb SINE - chr3:63100514-63100607 chr3 63100514 63100607 MamSINE1 SINE - chr3:63101181-63101243 chr3 63101181 63101243 MER91C DNA + chr3:63103171-63103313 chr3 63103171 63103313 MER5A1 DNA - chr3:63104154-63104201 chr3 63104154 63104201 L2d2 LINE - chr3:63104537-63104676 chr3 63104537 63104676 MER5B DNA + chr3:63107077-63107157 chr3 63107077 63107157 L2a LINE + chr3:63107824-63107973 chr3 63107824 63107973 MIRc SINE - chr3:63108652-63108896 chr3 63108652 63108896 L2b LINE - chr3:63110406-63110781 chr3 63110406 63110781 LTR16A LTR + chr3:63111625-63111676 chr3 63111625 63111676 L3b LINE + chr3:63113867-63113924 chr3 63113867 63113924 MER81 DNA + chr3:63118013-63118059 chr3 63118013 63118059 (ACAACT)n Simple_repeat + chr3:63120140-63120152 chr3 63120140 63120152 L1M3 LINE + chr3:63130145-63130191 chr3 63130145 63130191 (CA)n Simple_repeat + chr3:67716361-67716391 chr3 67716361 67716391 (GT)n Simple_repeat + chr3:67718017-67718048 chr3 67718017 67718048 (GATGAG)n Simple_repeat + chr3:67725614-67725636 chr3 67725614 67725636 (ATTT)n Simple_repeat + chr3:67728799-67728833 chr3 67728799 67728833 (TG)n Simple_repeat + chr3:67731407-67731450 chr3 67731407 67731450 MADE1 DNA + chr3:67733834-67733857 chr3 67733834 67733857 (T)n Simple_repeat + chr3:67742395-67742439 chr3 67742395 67742439 MER5B DNA + chr3:67795716-67795743 chr3 67795716 67795743 (A)n Simple_repeat + chr3:75472834-75472879 chr3 75472834 75472879 (AC)n Simple_repeat + chr3:75472940-75473131 chr3 75472940 75473131 AluJb SINE - chr3:75473612-75473787 chr3 75473612 75473787 MER30 DNA - chr3:75475304-75475368 chr3 75475304 75475368 MIR SINE - chr3:75478528-75478653 chr3 75478528 75478653 FLAM_A SINE + chr3:75483244-75483284 chr3 75483244 75483284 MIR SINE + chr3:88211101-88211130 chr3 88211101 88211130 (T)n Simple_repeat + chr3:88211410-88211556 chr3 88211410 88211556 L2d LINE + chr3:88211534-88211639 chr3 88211534 88211639 MIR SINE - chr3:88212986-88213175 chr3 88212986 88213175 L2a LINE + chr3:88213253-88213304 chr3 88213253 88213304 L2c LINE + chr3:88214193-88214249 chr3 88214193 88214249 MIR3 SINE + chr3:90136007-90136018 chr3 90136007 90136018 (ATAA)n Simple_repeat + chr3:9429263-9432125 chr3 9429263 9432125 Charlie1 DNA - chr3:9429617-9429848 chr3 9429617 9429848 AluSx SINE + chr3:9430477-9430548 chr3 9430477 9430548 MER2 DNA + chr3:9430576-9430735 chr3 9430576 9430735 MER2 DNA + chr3:9431198-9431501 chr3 9431198 9431501 AluJr SINE + chr3:9432451-9432530 chr3 9432451 9432530 MIRb SINE + chr3:9432559-9433517 chr3 9432559 9433517 Tigger1 DNA - chr3:9432940-9433241 chr3 9432940 9433241 AluSz SINE - chr3:9433848-9433885 chr3 9433848 9433885 A-rich Low_complexity + chr3:9436144-9436211 chr3 9436144 9436211 Charlie5 DNA - chr3:9436743-9436965 chr3 9436743 9436965 MER30 DNA - chr3:97517485-97517609 chr3 97517485 97517609 L2a LINE - chr3:97518514-97518690 chr3 97518514 97518690 MIR SINE - chr3:97518830-97518864 chr3 97518830 97518864 (T)n Simple_repeat + chr3:98115592-98116040 chr3 98115592 98116040 LTR7 LTR + chr4:100023031-100023050 chr4 100023031 100023050 (A)n Simple_repeat + chr4:10073996-10074024 chr4 10073996 10074024 (CA)n Simple_repeat + chr4:102747-102816 chr4 102747 102816 (GATG)n Simple_repeat + chr4:103715271-103715442 chr4 103715271 103715442 MER5A DNA - chr4:104801-104822 chr4 104801 104822 (T)n Simple_repeat + chr4:105389-105408 chr4 105389 105408 (AG)n Simple_repeat + chr4:110351219-110351238 chr4 110351219 110351238 (A)n Simple_repeat + chr4:113617-113689 chr4 113617 113689 (TTTC)n Simple_repeat + chr4:113618383-113618409 chr4 113618383 113618409 (TGT)n Simple_repeat + chr4:113619052-113619348 chr4 113619052 113619348 AluSx SINE - chr4:113625182-113625273 chr4 113625182 113625273 MIRb SINE - chr4:113627548-113627580 chr4 113627548 113627580 (CACA)n Simple_repeat + chr4:113627631-113627701 chr4 113627631 113627701 (AC)n Simple_repeat + chr4:113629438-113629470 chr4 113629438 113629470 (ATTGAA)n Simple_repeat + chr4:113629707-113629795 chr4 113629707 113629795 L2c LINE - chr4:113631193-113631372 chr4 113631193 113631372 MIRb SINE - chr4:113633187-113633212 chr4 113633187 113633212 (AC)n Simple_repeat + chr4:113633212-113633226 chr4 113633212 113633226 (TACA)n Simple_repeat + chr4:113643502-113643562 chr4 113643502 113643562 (AC)n Simple_repeat + chr4:113650050-113650090 chr4 113650050 113650090 AluYm1 SINE + chr4:113650092-113650376 chr4 113650092 113650376 AluJr SINE + chr4:113653312-113653391 chr4 113653312 113653391 MIR SINE - chr4:113654806-113654845 chr4 113654806 113654845 (TTCAA)n Simple_repeat + chr4:113655268-113655351 chr4 113655268 113655351 L1ME4b LINE + chr4:113656013-113656071 chr4 113656013 113656071 MARE9 Unknown + chr4:113656487-113656517 chr4 113656487 113656517 (AAAAT)n Simple_repeat + chr4:113660019-113660060 chr4 113660019 113660060 (AACA)n Simple_repeat + chr4:113662862-113663011 chr4 113662862 113663011 FLAM_A SINE + chr4:113662974-113663000 chr4 113662974 113663000 (AAAC)n Simple_repeat + chr4:113663552-113663579 chr4 113663552 113663579 (TG)n Simple_repeat + chr4:113664629-113664700 chr4 113664629 113664700 (TCTT)n Simple_repeat + chr4:113665000-113665023 chr4 113665000 113665023 (TCTT)n Simple_repeat + chr4:113665278-113665332 chr4 113665278 113665332 MADE1 DNA + chr4:113666433-113666450 chr4 113666433 113666450 (TATTGT)n Simple_repeat + chr4:113667134-113667167 chr4 113667134 113667167 (TTG)n Simple_repeat + chr4:113677073-113677100 chr4 113677073 113677100 (TTA)n Simple_repeat + chr4:113688346-113688396 chr4 113688346 113688396 L2d LINE - chr4:113688722-113688759 chr4 113688722 113688759 (AATA)n Simple_repeat + chr4:113689819-113689846 chr4 113689819 113689846 (AAAC)n Simple_repeat + chr4:113690-113746 chr4 113690 113746 FRAM SINE - chr4:113695241-113695286 chr4 113695241 113695286 AluYm1 SINE - chr4:113695385-113695401 chr4 113695385 113695401 (TAAC)n Simple_repeat + chr4:113695691-113695720 chr4 113695691 113695720 (TAAC)n Simple_repeat + chr4:113696671-113696701 chr4 113696671 113696701 (CA)n Simple_repeat + chr4:113702073-113702088 chr4 113702073 113702088 (TATAA)n Simple_repeat + chr4:113704784-113704825 chr4 113704784 113704825 (TTAT)n Simple_repeat + chr4:113707391-113707417 chr4 113707391 113707417 (A)n Simple_repeat + chr4:113717808-113717839 chr4 113717808 113717839 (T)n Simple_repeat + chr4:113720650-113720688 chr4 113720650 113720688 (ATTTTT)n Simple_repeat + chr4:113725779-113725817 chr4 113725779 113725817 AluJr4 SINE + chr4:113735250-113735298 chr4 113735250 113735298 MLT1J LTR - chr4:113735861-113735938 chr4 113735861 113735938 L2 LINE - chr4:115377740-115377766 chr4 115377740 115377766 (TAT)n Simple_repeat + chr4:115378060-115378084 chr4 115378060 115378084 (TAT)n Simple_repeat + chr4:115933-115964 chr4 115933 115964 (TG)n Simple_repeat + chr4:119518447-119518511 chr4 119518447 119518511 MIR1_Amn SINE + chr4:119518790-119518841 chr4 119518790 119518841 AluSq2 SINE + chr4:120353079-120353103 chr4 120353079 120353103 (A)n Simple_repeat + chr4:120355159-120355262 chr4 120355159 120355262 U6 snRNA - chr4:120369521-120369572 chr4 120369521 120369572 AluSq2 SINE - chr4:120369851-120369915 chr4 120369851 120369915 MIR1_Amn SINE - chr4:120374473-120374499 chr4 120374473 120374499 (TAGC)n Simple_repeat + chr4:120376909-120376990 chr4 120376909 120376990 AluSx SINE + chr4:120377049-120377264 chr4 120377049 120377264 AluJb SINE + chr4:120377448-120377772 chr4 120377448 120377772 AluJr4 SINE - chr4:120377813-120377967 chr4 120377813 120377967 AluSc SINE - chr4:120377967-120378054 chr4 120377967 120378054 FRAM SINE + chr4:120378721-120378760 chr4 120378721 120378760 (ATTATTT)n Simple_repeat + chr4:120379497-120379687 chr4 120379497 120379687 MER3 DNA - chr4:120379826-120379981 chr4 120379826 120379981 MER5A1 DNA - chr4:120380014-120380301 chr4 120380014 120380301 MER33 DNA + chr4:120380818-120381194 chr4 120380818 120381194 L1ME3 LINE - chr4:120384166-120384559 chr4 120384166 120384559 L1PA6 LINE - chr4:120385128-120385423 chr4 120385128 120385423 AluSp SINE + chr4:120386605-120387116 chr4 120386605 120387116 AluJr SINE + chr4:120386733-120387022 chr4 120386733 120387022 AluSq SINE + chr4:120387128-120387268 chr4 120387128 120387268 Charlie18a DNA - chr4:120387945-120387985 chr4 120387945 120387985 L2c LINE - chr4:120387985-120388210 chr4 120387985 120388210 L2a LINE - chr4:120388423-120388575 chr4 120388423 120388575 MIRb SINE - chr4:120388759-120389446 chr4 120388759 120389446 L2d LINE + chr4:120389822-120389944 chr4 120389822 120389944 MIRc SINE - chr4:120390136-120390644 chr4 120390136 120390644 X4b_DNA DNA + chr4:120391178-120391439 chr4 120391178 120391439 MamRTE1 LINE + chr4:120393137-120393196 chr4 120393137 120393196 MER91C DNA + chr4:120394599-120394630 chr4 120394599 120394630 (ATCC)n Simple_repeat + chr4:120395759-120395858 chr4 120395759 120395858 X34_DNA DNA + chr4:120396236-120396618 chr4 120396236 120396618 LTR16C LTR + chr4:120396618-120396738 chr4 120396618 120396738 L1ME3C LINE - chr4:120397907-120398202 chr4 120397907 120398202 AluJo SINE - chr4:120398471-120398675 chr4 120398471 120398675 MIRb SINE + chr4:120399452-120399707 chr4 120399452 120399707 L1ME4a LINE - chr4:120400724-120400947 chr4 120400724 120400947 MIR SINE + chr4:120402068-120402130 chr4 120402068 120402130 L2d2 LINE + chr4:120402192-120402334 chr4 120402192 120402334 MER5A DNA - chr4:120402405-120402606 chr4 120402405 120402606 MIRc SINE + chr4:120402815-120402885 chr4 120402815 120402885 Tigger10 DNA - chr4:120402952-120403486 chr4 120402952 120403486 L1MC1 LINE + chr4:120403542-120404046 chr4 120403542 120404046 MLT1D LTR + chr4:120409976-120410075 chr4 120409976 120410075 LTR79 LTR - chr4:120411413-120411485 chr4 120411413 120411485 (ATATTT)n Simple_repeat + chr4:120411516-120411793 chr4 120411516 120411793 L2b LINE + chr4:120413140-120413299 chr4 120413140 120413299 AluSx4 SINE - chr4:120413363-120413396 chr4 120413363 120413396 (GA)n Simple_repeat + chr4:120413648-120413906 chr4 120413648 120413906 AluSz SINE + chr4:120415160-120415379 chr4 120415160 120415379 MIRb SINE + chr4:120976627-120976648 chr4 120976627 120976648 (T)n Simple_repeat + chr4:120990813-120990858 chr4 120990813 120990858 L2a LINE + chr4:120991094-120991183 chr4 120991094 120991183 MER5A DNA - chr4:120991490-120991528 chr4 120991490 120991528 MER5A DNA + chr4:123749-123798 chr4 123749 123798 (GCGT)n Simple_repeat + chr4:124324952-124324987 chr4 124324952 124324987 (TGCTTTT)n Simple_repeat + chr4:1245895-1246197 chr4 1245895 1246197 AluSq2 SINE - chr4:124751343-124751352 chr4 124751343 124751352 (ATGTGT)n Simple_repeat + chr4:124853-125039 chr4 124853 125039 MER57E3 LTR - chr4:125070-125431 chr4 125070 125431 MER21C LTR + chr4:126115-126705 chr4 126115 126705 MER67C LTR + chr4:126705-127006 chr4 126705 127006 AluSc SINE - chr4:127008-127090 chr4 127008 127090 MER30B DNA - chr4:127257-127329 chr4 127257 127329 (ATAT)n Simple_repeat + chr4:127329-127510 chr4 127329 127510 MER6C DNA - chr4:127537-127861 chr4 127537 127861 L1MA9 LINE - chr4:127879-128186 chr4 127879 128186 AluY SINE - chr4:128194-130394 chr4 128194 130394 L1M3a LINE - chr4:128546-128645 chr4 128546 128645 FLAM_C SINE + chr4:128652-129413 chr4 128652 129413 MER4A1 LTR - chr4:128704-129002 chr4 128704 129002 AluSc SINE + chr4:129190250-129190287 chr4 129190250 129190287 (GT)n Simple_repeat + chr4:129477-129524 chr4 129477 129524 (TA)n Simple_repeat + chr4:130081-130257 chr4 130081 130257 L1M3a LINE - chr4:130392-131779 chr4 130392 131779 L1MB1 LINE - chr4:130662-131080 chr4 130662 131080 MSTA LTR + chr4:130952891-130952984 chr4 130952891 130952984 MLT1I LTR + chr4:130955889-130955934 chr4 130955889 130955934 (AT)n Simple_repeat + chr4:130957365-130957441 chr4 130957365 130957441 A-rich Low_complexity + chr4:130964550-130964566 chr4 130964550 130964566 (AAT)n Simple_repeat + chr4:130964852-130964874 chr4 130964852 130964874 (AAT)n Simple_repeat + chr4:130965581-130965618 chr4 130965581 130965618 (CATACA)n Simple_repeat + chr4:130966929-130966961 chr4 130966929 130966961 (GT)n Simple_repeat + chr4:130973596-130973684 chr4 130973596 130973684 L2b LINE - chr4:130976586-130976615 chr4 130976586 130976615 (ATTTAA)n Simple_repeat + chr4:130976622-130976653 chr4 130976622 130976653 (ATCTAT)n Simple_repeat + chr4:130976932-130976959 chr4 130976932 130976959 (TATG)n Simple_repeat + chr4:130979672-130979711 chr4 130979672 130979711 (TTAAT)n Simple_repeat + chr4:130980008-130980039 chr4 130980008 130980039 (TTTTGTA)n Simple_repeat + chr4:130983735-130983784 chr4 130983735 130983784 (ATTTATA)n Simple_repeat + chr4:130986567-130986621 chr4 130986567 130986621 (TG)n Simple_repeat + chr4:130994999-130995062 chr4 130994999 130995062 (GATA)n Simple_repeat + chr4:131004268-131004341 chr4 131004268 131004341 L3 LINE - chr4:131010425-131010458 chr4 131010425 131010458 (A)n Simple_repeat + chr4:131010464-131010489 chr4 131010464 131010489 (CTTT)n Simple_repeat + chr4:131015481-131015532 chr4 131015481 131015532 (AT)n Simple_repeat + chr4:131027617-131027643 chr4 131027617 131027643 (TGTTT)n Simple_repeat + chr4:131030628-131030660 chr4 131030628 131030660 (T)n Simple_repeat + chr4:131031088-131031112 chr4 131031088 131031112 (AC)n Simple_repeat + chr4:131031112-131031136 chr4 131031112 131031136 (ACATAC)n Simple_repeat + chr4:131031873-131031911 chr4 131031873 131031911 (AGATA)n Simple_repeat + chr4:131033327-131033366 chr4 131033327 131033366 (TG)n Simple_repeat + chr4:131034900-131034954 chr4 131034900 131034954 (ATTATA)n Simple_repeat + chr4:131037187-131037243 chr4 131037187 131037243 (AT)n Simple_repeat + chr4:131037243-131037269 chr4 131037243 131037269 (TG)n Simple_repeat + chr4:131038074-131038119 chr4 131038074 131038119 MIR SINE + chr4:131041810-131041837 chr4 131041810 131041837 (TG)n Simple_repeat + chr4:131042553-131042564 chr4 131042553 131042564 (TA)n Simple_repeat + chr4:131042564-131042601 chr4 131042564 131042601 (AC)n Simple_repeat + chr4:131042601-131042655 chr4 131042601 131042655 (TA)n Simple_repeat + chr4:131047063-131047108 chr4 131047063 131047108 (T)n Simple_repeat + chr4:131058300-131058320 chr4 131058300 131058320 (TA)n Simple_repeat + chr4:131058320-131058345 chr4 131058320 131058345 (TG)n Simple_repeat + chr4:131058345-131058380 chr4 131058345 131058380 (TA)n Simple_repeat + chr4:131062811-131062830 chr4 131062811 131062830 (TG)n Simple_repeat + chr4:131778-142912 chr4 131778 142912 L1MA3 LINE - chr4:133171-135549 chr4 133171 135549 MER51-int LTR + chr4:134066043-134066071 chr4 134066043 134066071 (AC)n Simple_repeat + chr4:134768-134831 chr4 134768 134831 MER4A1 LTR + chr4:135606-138086 chr4 135606 138086 MER51-int LTR + chr4:136982-137267 chr4 136982 137267 AluSg7 SINE - chr4:138847-138968 chr4 138847 138968 MSTC LTR - chr4:139251-139537 chr4 139251 139537 AluJb SINE - chr4:139599-139664 chr4 139599 139664 AluJr4 SINE - chr4:139967166-139967289 chr4 139967166 139967289 AluJo SINE + chr4:139968370-139968660 chr4 139968370 139968660 AluSq2 SINE + chr4:139976930-139976975 chr4 139976930 139976975 A-rich Low_complexity + chr4:140370257-140370313 chr4 140370257 140370313 AluYg6 SINE - chr4:140745-140971 chr4 140745 140971 AluSx4 SINE - chr4:141391-141663 chr4 141391 141663 AluSx3 SINE + chr4:142110-142417 chr4 142110 142417 AluSx1 SINE + chr4:143668-144140 chr4 143668 144140 L1MB2 LINE - chr4:144151-144244 chr4 144151 144244 L1M3 LINE - chr4:144252-147444 chr4 144252 147444 L1MA6 LINE - chr4:144672-144693 chr4 144672 144693 (TG)n Simple_repeat + chr4:144891-145187 chr4 144891 145187 AluSx SINE - chr4:145244-145520 chr4 145244 145520 AluSq SINE - chr4:146490-146531 chr4 146490 146531 Alu SINE - chr4:147446-147587 chr4 147446 147587 L1M2 LINE + chr4:150897-151209 chr4 150897 151209 AluSp SINE - chr4:151939716-151939746 chr4 151939716 151939746 (AT)n Simple_repeat + chr4:152032778-152032799 chr4 152032778 152032799 (TA)n Simple_repeat + chr4:152150648-152150673 chr4 152150648 152150673 (CA)n Simple_repeat + chr4:152151501-152151640 chr4 152151501 152151640 X9a_DNA DNA - chr4:152152498-152152545 chr4 152152498 152152545 (AT)n Simple_repeat + chr4:152152851-152152967 chr4 152152851 152152967 LFSINE_Vert SINE + chr4:152153557-152153633 chr4 152153557 152153633 MIRb SINE + chr4:152153693-152153827 chr4 152153693 152153827 MIRb SINE + chr4:152153854-152153927 chr4 152153854 152153927 L2d LINE + chr4:152160370-152160484 chr4 152160370 152160484 L2d2 LINE + chr4:152161135-152161258 chr4 152161135 152161258 AluJr4 SINE + chr4:152162698-152162735 chr4 152162698 152162735 (TTTA)n Simple_repeat + chr4:152162735-152162844 chr4 152162735 152162844 AluJo SINE - chr4:152162844-152162908 chr4 152162844 152162908 L1MB7 LINE + chr4:152163513-152163674 chr4 152163513 152163674 MIRb SINE - chr4:152165351-152165380 chr4 152165351 152165380 (AAC)n Simple_repeat + chr4:152165413-152165440 chr4 152165413 152165440 (TTTTG)n Simple_repeat + chr4:152166298-152166332 chr4 152166298 152166332 (AAAAT)n Simple_repeat + chr4:152167940-152168027 chr4 152167940 152168027 X9a_DNA DNA + chr4:152169283-152169414 chr4 152169283 152169414 FLAM_A SINE - chr4:152169821-152169903 chr4 152169821 152169903 MIRb SINE + chr4:152169960-152169992 chr4 152169960 152169992 (AAACA)n Simple_repeat + chr4:152171660-152171681 chr4 152171660 152171681 (AG)n Simple_repeat + chr4:152174915-152174939 chr4 152174915 152174939 (CAA)n Simple_repeat + chr4:152175178-152175275 chr4 152175178 152175275 MIRc SINE + chr4:152177833-152177861 chr4 152177833 152177861 (T)n Simple_repeat + chr4:152179154-152179200 chr4 152179154 152179200 (GTCCCAT)n Simple_repeat + chr4:152213704-152213813 chr4 152213704 152213813 L4_C_Mam LINE + chr4:152217277-152217331 chr4 152217277 152217331 L1MB8 LINE + chr4:152217640-152217670 chr4 152217640 152217670 (AAAT)n Simple_repeat + chr4:152221669-152221765 chr4 152221669 152221765 U6 snRNA + chr4:152223667-152223788 chr4 152223667 152223788 MER58B DNA - chr4:152223830-152223929 chr4 152223830 152223929 MIR3 SINE - chr4:152224643-152224749 chr4 152224643 152224749 HAL1ME LINE - chr4:152224898-152224995 chr4 152224898 152224995 MamSINE1 SINE - chr4:152225137-152225268 chr4 152225137 152225268 FLAM_A SINE - chr4:152226481-152226609 chr4 152226481 152226609 L1MD LINE - chr4:152227482-152227574 chr4 152227482 152227574 MIR SINE + chr4:152229390-152229486 chr4 152229390 152229486 L2a LINE - chr4:152231154-152231218 chr4 152231154 152231218 AluJb SINE + chr4:152232173-152232266 chr4 152232173 152232266 L1M2 LINE - chr4:152232267-152232294 chr4 152232267 152232294 (TATA)n Simple_repeat + chr4:152233537-152233665 chr4 152233537 152233665 MER5B DNA + chr4:152233695-152233768 chr4 152233695 152233768 MER5A1 DNA + chr4:152234256-152234354 chr4 152234256 152234354 MER5A1 DNA + chr4:152235558-152235712 chr4 152235558 152235712 MIRc SINE - chr4:152236811-152236949 chr4 152236811 152236949 FLAM_C SINE + chr4:152237129-152237194 chr4 152237129 152237194 MER31A LTR - chr4:152238456-152238558 chr4 152238456 152238558 MIR3 SINE - chr4:152240785-152240970 chr4 152240785 152240970 MIRc SINE + chr4:152241046-152241213 chr4 152241046 152241213 MIRb SINE + chr4:152241516-152241565 chr4 152241516 152241565 Charlie24 DNA - chr4:152242355-152242464 chr4 152242355 152242464 MER81 DNA - chr4:152242509-152242546 chr4 152242509 152242546 (CTAACA)n Simple_repeat + chr4:152325068-152325099 chr4 152325068 152325099 (TG)n Simple_repeat + chr4:152326024-152326046 chr4 152326024 152326046 (ATT)n Simple_repeat + chr4:152815-153125 chr4 152815 153125 AluSx3 SINE - chr4:153457847-153457876 chr4 153457847 153457876 (AATG)n Simple_repeat + chr4:153457876-153457961 chr4 153457876 153457961 MIRc SINE + chr4:153674-153741 chr4 153674 153741 L3 LINE - chr4:154339-154640 chr4 154339 154640 AluSx3 SINE - chr4:156555261-156555287 chr4 156555261 156555287 (T)n Simple_repeat + chr4:15691607-15691659 chr4 15691607 15691659 L2a LINE + chr4:157667-157858 chr4 157667 157858 L1MA2 LINE - chr4:159306-159600 chr4 159306 159600 AluSx1 SINE + chr4:159638-165778 chr4 159638 165778 L1PA4 LINE - chr4:16230455-16230656 chr4 16230455 16230656 Tigger19b DNA + chr4:16232032-16232177 chr4 16232032 16232177 MIR3 SINE + chr4:16233687-16233714 chr4 16233687 16233714 (T)n Simple_repeat + chr4:164442261-164442297 chr4 164442261 164442297 MamSINE1 SINE - chr4:164442910-164445234 chr4 164442910 164445234 L2b LINE + chr4:164444175-164445089 chr4 164444175 164445089 LTR75 LTR + chr4:164444697-164445020 chr4 164444697 164445020 MER2 DNA + chr4:165799287-165799375 chr4 165799287 165799375 A-rich Low_complexity + chr4:165800208-165800433 chr4 165800208 165800433 L1MC5a LINE + chr4:165800563-165800618 chr4 165800563 165800618 (TCCTC)n Simple_repeat + chr4:165800618-165800890 chr4 165800618 165800890 AluJb SINE - chr4:165802904-165803168 chr4 165802904 165803168 AluJr SINE + chr4:165803243-165803555 chr4 165803243 165803555 AluSp SINE - chr4:165803730-165803749 chr4 165803730 165803749 (ATT)n Simple_repeat + chr4:165803755-165804134 chr4 165803755 165804134 L1PA4 LINE - chr4:165804632-165804937 chr4 165804632 165804937 AluJo SINE - chr4:165805068-165805389 chr4 165805068 165805389 GA-rich Low_complexity + chr4:165805389-165806246 chr4 165805389 165806246 L2c LINE + chr4:165805720-165805940 chr4 165805720 165805940 MIRc SINE + chr4:165806277-165806582 chr4 165806277 165806582 AluSz SINE - chr4:165806610-165806903 chr4 165806610 165806903 AluSx1 SINE + chr4:165807522-165807811 chr4 165807522 165807811 AluJr SINE + chr4:165807959-165808279 chr4 165807959 165808279 AluSq SINE - chr4:165808665-165810116 chr4 165808665 165810116 L2b LINE + chr4:165808768-165809063 chr4 165808768 165809063 AluSq2 SINE - chr4:165809343-165809783 chr4 165809343 165809783 MER89 LTR - chr4:165810124-165810148 chr4 165810124 165810148 (GT)n Simple_repeat + chr4:165810160-165810282 chr4 165810160 165810282 AluSq2 SINE - chr4:165810316-165810353 chr4 165810316 165810353 (GGTGGG)n Simple_repeat + chr4:165810468-165810528 chr4 165810468 165810528 (TA)n Simple_repeat + chr4:165810705-165810826 chr4 165810705 165810826 L1PA8 LINE - chr4:165810832-165811392 chr4 165810832 165811392 L1ME4b LINE - chr4:165810855-165811196 chr4 165810855 165811196 MER2 DNA + chr4:165815115-165815151 chr4 165815115 165815151 A-rich Low_complexity + chr4:165815192-165815461 chr4 165815192 165815461 AluSz SINE + chr4:165815558-165815856 chr4 165815558 165815856 AluSz6 SINE - chr4:165815865-165815976 chr4 165815865 165815976 FLAM_C SINE - chr4:165816214-165816367 chr4 165816214 165816367 AluSz6 SINE + chr4:165817247-165817474 chr4 165817247 165817474 AluSz6 SINE - chr4:165817938-165818231 chr4 165817938 165818231 AluJb SINE - chr4:165892-166168 chr4 165892 166168 L1MA6 LINE - chr4:166233-166442 chr4 166233 166442 MIR SINE - chr4:166248174-166248218 chr4 166248174 166248218 MIRb SINE + chr4:166264323-166264346 chr4 166264323 166264346 (T)n Simple_repeat + chr4:169641-169790 chr4 169641 169790 AluYm1 SINE - chr4:171166137-171166166 chr4 171166137 171166166 (TG)n Simple_repeat + chr4:171191477-171191500 chr4 171191477 171191500 (AAC)n Simple_repeat + chr4:171201464-171201494 chr4 171201464 171201494 (T)n Simple_repeat + chr4:171652-171865 chr4 171652 171865 LTR60 LTR + chr4:173304-173339 chr4 173304 173339 (TGTATG)n Simple_repeat + chr4:173612-173657 chr4 173612 173657 (ATTTT)n Simple_repeat + chr4:174247205-174247379 chr4 174247205 174247379 MIRb SINE - chr4:174248214-174248287 chr4 174248214 174248287 L2a LINE - chr4:174249775-174250055 chr4 174249775 174250055 AluJb SINE - chr4:174251067-174251145 chr4 174251067 174251145 MIRc SINE - chr4:174251838-174252026 chr4 174251838 174252026 Tigger7 DNA + chr4:174252207-174252480 chr4 174252207 174252480 AluSz SINE + chr4:174947-174974 chr4 174947 174974 (T)n Simple_repeat + chr4:176193-176238 chr4 176193 176238 (TATT)n Simple_repeat + chr4:177261036-177261094 chr4 177261036 177261094 MADE1 DNA - chr4:177261643-177261689 chr4 177261643 177261689 MIRb SINE - chr4:180096306-180096401 chr4 180096306 180096401 AluSz6 SINE - chr4:180105229-180105286 chr4 180105229 180105286 (AC)n Simple_repeat + chr4:180105344-180105382 chr4 180105344 180105382 (ATTTA)n Simple_repeat + chr4:180106625-180106758 chr4 180106625 180106758 L1M6 LINE + chr4:180111675-180111708 chr4 180111675 180111708 (TG)n Simple_repeat + chr4:180112920-180112987 chr4 180112920 180112987 AluJb SINE - chr4:180121449-180121475 chr4 180121449 180121475 (AAAAG)n Simple_repeat + chr4:180125956-180125986 chr4 180125956 180125986 (GT)n Simple_repeat + chr4:180126284-180126318 chr4 180126284 180126318 (CA)n Simple_repeat + chr4:180142199-180142251 chr4 180142199 180142251 (TGTT)n Simple_repeat + chr4:180151517-180151543 chr4 180151517 180151543 (TG)n Simple_repeat + chr4:180977-180999 chr4 180977 180999 (T)n Simple_repeat + chr4:182938730-182938749 chr4 182938730 182938749 (AC)n Simple_repeat + chr4:182968422-182968434 chr4 182968422 182968434 (AATG)n Simple_repeat + chr4:182968735-182968751 chr4 182968735 182968751 (AATG)n Simple_repeat + chr4:182978443-182978464 chr4 182978443 182978464 (AG)n Simple_repeat + chr4:182987752-182987781 chr4 182987752 182987781 (AT)n Simple_repeat + chr4:182988066-182988078 chr4 182988066 182988078 (AT)n Simple_repeat + chr4:183000367-183000387 chr4 183000367 183000387 (AGAGTAA)n Simple_repeat + chr4:183000659-183000681 chr4 183000659 183000681 (AGAGTAA)n Simple_repeat + chr4:183798132-183798139 chr4 183798132 183798139 (AACAA)n Simple_repeat + chr4:187508426-187508454 chr4 187508426 187508454 MIR SINE + chr4:188926398-188926745 chr4 188926398 188926745 MLT1B LTR - chr4:188928140-188928165 chr4 188928140 188928165 (A)n Simple_repeat + chr4:189388337-189388373 chr4 189388337 189388373 (GGAT)n Simple_repeat + chr4:189391300-189391350 chr4 189391300 189391350 A-rich Low_complexity + chr4:189664-189774 chr4 189664 189774 HERV9NC-int LTR - chr4:189774-189854 chr4 189774 189854 (TC)n Simple_repeat + chr4:191656-191724 chr4 191656 191724 (GATG)n Simple_repeat + chr4:192869-193009 chr4 192869 193009 MIR SINE + chr4:193249-193395 chr4 193249 193395 MamTip2b DNA - chr4:199851-199889 chr4 199851 199889 (GT)n Simple_repeat + chr4:200627-200727 chr4 200627 200727 MIR1_Amn SINE - chr4:201298-201370 chr4 201298 201370 MER5A1 DNA + chr4:203051-203125 chr4 203051 203125 L2d2 LINE + chr4:203296-203468 chr4 203296 203468 MER5B DNA - chr4:206096-206125 chr4 206096 206125 (GTGT)n Simple_repeat + chr4:206907-207099 chr4 206907 207099 MER57E3 LTR - chr4:207130-207477 chr4 207130 207477 MER21C LTR + chr4:210555-210603 chr4 210555 210603 L2c LINE - chr4:212109-212410 chr4 212109 212410 AluY SINE + chr4:213363-213665 chr4 213363 213665 AluSx1 SINE - chr4:214132-214319 chr4 214132 214319 MER30B DNA - chr4:214450-214759 chr4 214450 214759 AluSx1 SINE + chr4:214854-215262 chr4 214854 215262 MER6C DNA - chr4:214933-215148 chr4 214933 215148 AluSx3 SINE + chr4:217000-217133 chr4 217000 217133 FLAM_C SINE + chr4:218422-218840 chr4 218422 218840 MSTA LTR + chr4:218924-219222 chr4 218924 219222 AluSz SINE + chr4:220404-220532 chr4 220404 220532 L1PA13 LINE + chr4:220729-221034 chr4 220729 221034 AluSx1 SINE + chr4:222243-222845 chr4 222243 222845 AluSx1 SINE + chr4:222379-222676 chr4 222379 222676 AluY SINE + chr4:22387080-22387107 chr4 22387080 22387107 (AAAAC)n Simple_repeat + chr4:224272-224567 chr4 224272 224567 AluSx SINE - chr4:225107-225419 chr4 225107 225419 AluSc8 SINE - chr4:225619-225641 chr4 225619 225641 (AAAT)n Simple_repeat + chr4:226783-227285 chr4 226783 227285 MER92B LTR - chr4:227336-227692 chr4 227336 227692 MER21C LTR + chr4:227709-227998 chr4 227709 227998 AluJb SINE + chr4:228061-228089 chr4 228061 228089 (TTG)n Simple_repeat + chr4:228717-228849 chr4 228717 228849 MER67C LTR + chr4:229818-230181 chr4 229818 230181 MSTD LTR - chr4:230475-230750 chr4 230475 230750 AluJb SINE - chr4:230802-230876 chr4 230802 230876 FLAM_C SINE - chr4:231502-231736 chr4 231502 231736 L1MA2 LINE - chr4:234011-234295 chr4 234011 234295 AluSp SINE + chr4:234295-234314 chr4 234295 234314 (CAA)n Simple_repeat + chr4:234489-234797 chr4 234489 234797 AluY SINE + chr4:239003-239096 chr4 239003 239096 AluSq2 SINE - chr4:239369-239459 chr4 239369 239459 LTR5B LTR - chr4:240059-240124 chr4 240059 240124 L1MA6 LINE - chr4:240488-240700 chr4 240488 240700 AluSq SINE + chr4:241790-241878 chr4 241790 241878 AluSq2 SINE + chr4:242785-243004 chr4 242785 243004 L1M2 LINE + chr4:243029-243330 chr4 243029 243330 AluSx1 SINE + chr4:244739-245040 chr4 244739 245040 AluY SINE + chr4:24520842-24520907 chr4 24520842 24520907 L2c LINE - chr4:24524685-24525926 chr4 24524685 24525926 L1ME1 LINE + chr4:24524725-24525021 chr4 24524725 24525021 AluSp SINE + chr4:24526417-24526826 chr4 24526417 24526826 L3 LINE + chr4:24528185-24528325 chr4 24528185 24528325 MER135 DNA + chr4:245356-245663 chr4 245356 245663 L1M4c LINE - chr4:246615-246682 chr4 246615 246682 L3 LINE - chr4:248743-249254 chr4 248743 249254 L1MA3 LINE - chr4:248835-249136 chr4 248835 249136 AluYk3 SINE + chr4:250292-250663 chr4 250292 250663 SVA_F Retroposon - chr4:251780-252199 chr4 251780 252199 L1MA8 LINE - chr4:252301-252591 chr4 252301 252591 AluSx4 SINE - chr4:252598-252791 chr4 252598 252791 MIR SINE - chr4:252918-253905 chr4 252918 253905 LTR13 LTR + chr4:254283-254579 chr4 254283 254579 MER52-int LTR + chr4:255960-256260 chr4 255960 256260 AluYk3 SINE - chr4:258293-258957 chr4 258293 258957 LTR60B LTR + chr4:259782-260076 chr4 259782 260076 AluSc SINE + chr4:260704-260768 chr4 260704 260768 L1MA2 LINE + chr4:260768-261275 chr4 260768 261275 AluSx SINE + chr4:260812-261090 chr4 260812 261090 AluYe5 SINE + chr4:261275-261410 chr4 261275 261410 L1MA3 LINE + chr4:2612988-2613013 chr4 2612988 2613013 (TATT)n Simple_repeat + chr4:261641-261933 chr4 261641 261933 AluSg SINE + chr4:2626583-2626607 chr4 2626583 2626607 (TGTG)n Simple_repeat + chr4:263008-263041 chr4 263008 263041 (GTACAG)n Simple_repeat + chr4:263358-263658 chr4 263358 263658 AluYk2 SINE + chr4:2937564-2938201 chr4 2937564 2938201 LTR8 LTR + chr4:299558-299577 chr4 299558 299577 (CA)n Simple_repeat + chr4:303251-303325 chr4 303251 303325 L2d2 LINE - chr4:303493-303554 chr4 303493 303554 Alu SINE - chr4:304295-304391 chr4 304295 304391 L1ME2z LINE - chr4:304432-304524 chr4 304432 304524 MER5A1 DNA - chr4:307676-307783 chr4 307676 307783 GA-rich Low_complexity + chr4:311815-311883 chr4 311815 311883 (CATC)n Simple_repeat + chr4:315735-315838 chr4 315735 315838 SVA_F Retroposon + chr4:323299-323342 chr4 323299 323342 (ATAC)n Simple_repeat + chr4:328792-328860 chr4 328792 328860 (GATG)n Simple_repeat + chr4:331191-331321 chr4 331191 331321 (TG)n Simple_repeat + chr4:384880-384945 chr4 384880 384945 L2c LINE - chr4:385039-385075 chr4 385039 385075 (TTA)n Simple_repeat + chr4:39454805-39455074 chr4 39454805 39455074 AluJr4 SINE + chr4:39455324-39455429 chr4 39455324 39455429 L2 LINE - chr4:39533557-39533699 chr4 39533557 39533699 AluJb SINE - chr4:39533841-39534002 chr4 39533841 39534002 AluSg7 SINE + chr4:39534563-39534753 chr4 39534563 39534753 AluSx3 SINE - chr4:39537250-39537448 chr4 39537250 39537448 Charlie2a DNA + chr4:3956126-3956170 chr4 3956126 3956170 MIR SINE + chr4:40160948-40161398 chr4 40160948 40161398 MLT1J LTR - chr4:40165462-40165585 chr4 40165462 40165585 MIRb SINE - chr4:409696-409734 chr4 409696 409734 (CA)n Simple_repeat + chr4:412491-412518 chr4 412491 412518 (T)n Simple_repeat + chr4:415119-415191 chr4 415119 415191 L1M4 LINE - chr4:415697-415778 chr4 415697 415778 FLAM_C SINE - chr4:4546319-4546395 chr4 4546319 4546395 FLAM_A SINE - chr4:4546503-4546901 chr4 4546503 4546901 Tigger2a DNA + chr4:4556135-4556157 chr4 4556135 4556157 (TTCA)n Simple_repeat + chr4:4562416-4562450 chr4 4562416 4562450 A-rich Low_complexity + chr4:4580681-4580722 chr4 4580681 4580722 (ACA)n Simple_repeat + chr4:4581113-4581150 chr4 4581113 4581150 (AC)n Simple_repeat + chr4:4592543-4592563 chr4 4592543 4592563 (TG)n Simple_repeat + chr4:4635433-4635481 chr4 4635433 4635481 L2c LINE + chr4:4635481-4635527 chr4 4635481 4635527 L2b LINE + chr4:4645373-4645404 chr4 4645373 4645404 (T)n Simple_repeat + chr4:4708893-4708920 chr4 4708893 4708920 (TTCTT)n Simple_repeat + chr4:47842455-47842615 chr4 47842455 47842615 L2c LINE - chr4:47843331-47843436 chr4 47843331 47843436 MIR SINE + chr4:47843470-47843585 chr4 47843470 47843585 MIR SINE - chr4:47843676-47843707 chr4 47843676 47843707 L2b LINE - chr4:47843755-47843921 chr4 47843755 47843921 MLT1C2 LTR + chr4:47843922-47844126 chr4 47843922 47844126 L2a LINE - chr4:47845677-47846154 chr4 47845677 47846154 L2a LINE + chr4:47846267-47846306 chr4 47846267 47846306 MIRb SINE + chr4:53528488-53528605 chr4 53528488 53528605 MST-int LTR - chr4:53578113-53581687 chr4 53578113 53581687 L2a LINE - chr4:53579897-53580378 chr4 53579897 53580378 MIR SINE - chr4:53579929-53580342 chr4 53579929 53580342 LTR21A LTR + chr4:53580800-53580928 chr4 53580800 53580928 MSTA LTR + chr4:53580933-53581132 chr4 53580933 53581132 AluJr SINE + chr4:53581133-53581216 chr4 53581133 53581216 ERV24_Prim-int LTR - chr4:53581216-53581409 chr4 53581216 53581409 MSTA LTR + chr4:53582261-53582304 chr4 53582261 53582304 U6 snRNA + chr4:53582343-53582417 chr4 53582343 53582417 L2a LINE - chr4:53582437-53582493 chr4 53582437 53582493 MER3 DNA - chr4:53582757-53582835 chr4 53582757 53582835 MER3 DNA - chr4:53607547-53607574 chr4 53607547 53607574 (TG)n Simple_repeat + chr4:57327686-57327838 chr4 57327686 57327838 AluJr SINE - chr4:57328169-57328675 chr4 57328169 57328675 L2a LINE - chr4:57328673-57328786 chr4 57328673 57328786 MIR SINE + chr4:57328886-57329188 chr4 57328886 57329188 AluSp SINE + chr4:6673444-6678619 chr4 6673444 6678619 L2b LINE - chr4:68335358-68335408 chr4 68335358 68335408 L1PBb LINE - chr4:68335649-68335803 chr4 68335649 68335803 MER3 DNA + chr4:68336335-68337327 chr4 68336335 68337327 L1M4a1 LINE + chr4:68567351-68567506 chr4 68567351 68567506 MIR3 SINE - chr4:68567861-68567916 chr4 68567861 68567916 MamTip2b DNA - chr4:68567952-68568208 chr4 68567952 68568208 LTR54B LTR - chr4:68568275-68568323 chr4 68568275 68568323 MER104 DNA + chr4:68568395-68568665 chr4 68568395 68568665 HAL1M8 LINE + chr4:68569939-68569984 chr4 68569939 68569984 MADE1 DNA + chr4:68570221-68570263 chr4 68570221 68570263 (GT)n Simple_repeat + chr4:68571904-68572052 chr4 68571904 68572052 L1M2 LINE - chr4:68572449-68572805 chr4 68572449 68572805 THE1B LTR - chr4:68576416-68576599 chr4 68576416 68576599 MIR3 SINE - chr4:68576889-68577149 chr4 68576889 68577149 MLT1A0 LTR + chr4:68578718-68578756 chr4 68578718 68578756 Tigger19b DNA - chr4:68579477-68579554 chr4 68579477 68579554 MIR3 SINE + chr4:68579972-68580029 chr4 68579972 68580029 Charlie4z DNA - chr4:68583476-68583537 chr4 68583476 68583537 MIRb SINE + chr4:68583798-68583841 chr4 68583798 68583841 (TCC)n Simple_repeat + chr4:68586966-68588276 chr4 68586966 68588276 LTR58 LTR + chr4:68587379-68588008 chr4 68587379 68588008 MER41B LTR - chr4:69270452-69276254 chr4 69270452 69276254 MER4-int LTR + chr4:69272289-69272324 chr4 69272289 69272324 (ACA)n Simple_repeat + chr4:69272921-69273321 chr4 69272921 69273321 LTR7 LTR - chr4:69274962-69275092 chr4 69274962 69275092 LTR8 LTR - chr4:69276886-69276975 chr4 69276886 69276975 L1M5 LINE + chr4:69310120-69310142 chr4 69310120 69310142 (A)n Simple_repeat + chr4:69794-70102 chr4 69794 70102 LTR22B LTR - chr4:70233-70527 chr4 70233 70527 AluSz SINE - chr4:71673244-71673516 chr4 71673244 71673516 AluJr SINE - chr4:71673644-71673988 chr4 71673644 71673988 MER2B DNA - chr4:72996-73498 chr4 72996 73498 MER92B LTR - chr4:73537-73907 chr4 73537 73907 MER21C LTR + chr4:73918-74136 chr4 73918 74136 AluJb SINE + chr4:74125256-74125316 chr4 74125256 74125316 MIR3 SINE + chr4:74125844-74125884 chr4 74125844 74125884 L2c LINE - chr4:74368-74814 chr4 74368 74814 MER4A1 LTR - chr4:75111-75468 chr4 75111 75468 MSTD LTR - chr4:75695-75719 chr4 75695 75719 (T)n Simple_repeat + chr4:75801-76086 chr4 75801 76086 AluJb SINE - chr4:76125-76200 chr4 76125 76200 FLAM_C SINE - chr4:76869742-76869876 chr4 76869742 76869876 MamRep605 LTR? + chr4:77071412-77071467 chr4 77071412 77071467 MER30 DNA + chr4:773175-773350 chr4 773175 773350 AluJo SINE + chr4:773507-773653 chr4 773507 773653 AluJb SINE + chr4:773713-773825 chr4 773713 773825 FRAM SINE - chr4:773825-774336 chr4 773825 774336 L1MC3 LINE - chr4:773975-774277 chr4 773975 774277 AluSp SINE - chr4:774404-774507 chr4 774404 774507 MER34B LTR + chr4:77864403-77864462 chr4 77864403 77864462 MIR3 SINE - chr4:77889-78199 chr4 77889 78199 AluY SINE - chr4:78604-78884 chr4 78604 78884 AluSp SINE - chr4:78884-79330 chr4 78884 79330 L1MB2 LINE - chr4:78978525-78978558 chr4 78978525 78978558 (GCGGT)n Simple_repeat + chr4:79332-79869 chr4 79332 79869 L1M2 LINE - chr4:79884-80330 chr4 79884 80330 L1M2 LINE + chr4:79920-80210 chr4 79920 80210 AluSp SINE - chr4:80340-81075 chr4 80340 81075 L1PA8 LINE - chr4:80358-80725 chr4 80358 80725 LTR7 LTR - chr4:82249-82575 chr4 82249 82575 AluSp SINE - chr4:83229-83540 chr4 83229 83540 AluY SINE + chr4:83297802-83297829 chr4 83297802 83297829 (AC)n Simple_repeat + chr4:85887833-85887856 chr4 85887833 85887856 (CTGA)n Simple_repeat + chr4:87441-87933 chr4 87441 87933 L1MA3 LINE - chr4:87604-87907 chr4 87604 87907 AluSx3 SINE - chr4:87955-87992 chr4 87955 87992 (TTATAA)n Simple_repeat + chr4:88856871-88856912 chr4 88856871 88856912 MER50 LTR + chr4:88857073-88858699 chr4 88857073 88858699 HERVH-int LTR - chr4:89478-91126 chr4 89478 91126 L1MB2 LINE - chr4:89797-90128 chr4 89797 90128 AluJb SINE - chr4:90602411-90602828 chr4 90602411 90602828 MER61C LTR + chr4:90603321-90603568 chr4 90603321 90603568 L1M5 LINE - chr4:90603907-90604154 chr4 90603907 90604154 LTR89B LTR - chr4:90605745-90605784 chr4 90605745 90605784 L2d2 LINE + chr4:90608119-90610866 chr4 90608119 90610866 L2a LINE - chr4:90609152-90609593 chr4 90609152 90609593 MER21B LTR + chr4:90611699-90611822 chr4 90611699 90611822 AluSx4 SINE - chr4:90612295-90612395 chr4 90612295 90612395 L1MEd LINE + chr4:90612552-90612680 chr4 90612552 90612680 FRAM SINE + chr4:90614467-90614615 chr4 90614467 90614615 HAL1ME LINE + chr4:90614694-90614763 chr4 90614694 90614763 HAL1ME LINE + chr4:90636807-90636841 chr4 90636807 90636841 (AC)n Simple_repeat + chr4:90637079-90637111 chr4 90637079 90637111 (TTG)n Simple_repeat + chr4:90639856-90639890 chr4 90639856 90639890 (TTGT)n Simple_repeat + chr4:91146-91184 chr4 91146 91184 (TGTGTG)n Simple_repeat + chr4:93165798-93180216 chr4 93165798 93180216 L1ME3A LINE - chr4:93178669-93178733 chr4 93178669 93178733 (ATATTTA)n Simple_repeat + chr4:93178678-93178714 chr4 93178678 93178714 (ATATA)n Simple_repeat + chr4:93178714-93178720 chr4 93178714 93178720 (AT)n Simple_repeat + chr4:93179380-93179449 chr4 93179380 93179449 L1MEc LINE - chr4:93179449-93179854 chr4 93179449 93179854 MSTA LTR - chr4:93180325-93181013 chr4 93180325 93181013 L1PA6 LINE - chr4:93182016-93182063 chr4 93182016 93182063 (TAATTT)n Simple_repeat + chr4:93182094-93182228 chr4 93182094 93182228 L2a LINE + chr4:93183215-93183257 chr4 93183215 93183257 A-rich Low_complexity + chr4:93186069-93186101 chr4 93186069 93186101 (TGA)n Simple_repeat + chr4:93186911-93187334 chr4 93186911 93187334 MLT1L LTR - chr4:93187382-93187418 chr4 93187382 93187418 (TTTTATA)n Simple_repeat + chr4:93187642-93188089 chr4 93187642 93188089 LTR37B LTR + chr4:93190416-93190571 chr4 93190416 93190571 MER5A1 DNA + chr4:93190751-93191022 chr4 93190751 93191022 L2a LINE - chr4:93191518-93191718 chr4 93191518 93191718 LTR16A LTR - chr4:93191829-93192234 chr4 93191829 93192234 LTR16B2 LTR - chr4:93192642-93198799 chr4 93192642 93198799 HERVH-int LTR - chr4:96505-96534 chr4 96505 96534 (AC)n Simple_repeat + chr4:98030037-98030102 chr4 98030037 98030102 (CCTCTT)n Simple_repeat + chr4:98030218-98030251 chr4 98030218 98030251 (AG)n Simple_repeat + chr4:99987881-99987903 chr4 99987881 99987903 (TTG)n Simple_repeat + chr5:10226265-10226399 chr5 10226265 10226399 L2a LINE + chr5:106950-106979 chr5 106950 106979 (TG)n Simple_repeat + chr5:107007798-107007821 chr5 107007798 107007821 (GCA)n Simple_repeat + chr5:108416-108450 chr5 108416 108450 (CTTC)n Simple_repeat + chr5:112206940-112206967 chr5 112206940 112206967 (T)n Simple_repeat + chr5:114541786-114541849 chr5 114541786 114541849 (ATATCT)n Simple_repeat + chr5:114543223-114543305 chr5 114543223 114543305 L1ME2 LINE - chr5:114543315-114544457 chr5 114543315 114544457 L1M5 LINE - chr5:114544558-114545377 chr5 114544558 114545377 L1M8 LINE - chr5:114545464-114545654 chr5 114545464 114545654 MIRb SINE - chr5:115633152-115633196 chr5 115633152 115633196 MER58A DNA + chr5:115636332-115636364 chr5 115636332 115636364 (AC)n Simple_repeat + chr5:115638932-115638959 chr5 115638932 115638959 (T)n Simple_repeat + chr5:115910848-115910870 chr5 115910848 115910870 (A)n Simple_repeat + chr5:121364414-121364450 chr5 121364414 121364450 L1MC4 LINE - chr5:121364591-121365522 chr5 121364591 121365522 L1MEc LINE - chr5:121364742-121364954 chr5 121364742 121364954 MER20 DNA + chr5:121365544-121365622 chr5 121365544 121365622 L1MC4 LINE - chr5:121365622-121368921 chr5 121365622 121368921 L1MC4a LINE - chr5:121365803-121367827 chr5 121365803 121367827 L1MB7 LINE + chr5:121366377-121366456 chr5 121366377 121366456 L1M4 LINE - chr5:121366485-121366576 chr5 121366485 121366576 L1M4 LINE + chr5:121368617-121368665 chr5 121368617 121368665 (T)n Simple_repeat + chr5:12650683-12650718 chr5 12650683 12650718 (TACTAA)n Simple_repeat + chr5:12651082-12652504 chr5 12651082 12652504 L1MEc LINE + chr5:12651957-12652001 chr5 12651957 12652001 (GT)n Simple_repeat + chr5:12653032-12653165 chr5 12653032 12653165 AluJo SINE + chr5:12653510-12653989 chr5 12653510 12653989 L1PB1 LINE + chr5:12654316-12654827 chr5 12654316 12654827 L1ME3Cz LINE - chr5:12655068-12655767 chr5 12655068 12655767 L1MEf LINE - chr5:12655802-12657634 chr5 12655802 12657634 L1MEc LINE + chr5:12656482-12656518 chr5 12656482 12656518 (ATCT)n Simple_repeat + chr5:12660493-12661271 chr5 12660493 12661271 LTR17 LTR - chr5:12663571-12663660 chr5 12663571 12663660 HAL1 LINE - chr5:12663719-12668442 chr5 12663719 12668442 HERVH-int LTR - chr5:127397133-127397217 chr5 127397133 127397217 MER34A LTR + chr5:127403832-127403856 chr5 127403832 127403856 (AATA)n Simple_repeat + chr5:127410291-127410328 chr5 127410291 127410328 (AACCAA)n Simple_repeat + chr5:127411766-127411879 chr5 127411766 127411879 Plat_L3 LINE + chr5:127412256-127412304 chr5 127412256 127412304 (AAGAGATT)n Simple_repeat + chr5:127455-127495 chr5 127455 127495 (TTA)n Simple_repeat + chr5:128794883-128794923 chr5 128794883 128794923 (GT)n Simple_repeat + chr5:130158-130204 chr5 130158 130204 (AG)n Simple_repeat + chr5:133737581-133737622 chr5 133737581 133737622 (ATGGT)n Simple_repeat + chr5:135797-135843 chr5 135797 135843 (AT)n Simple_repeat + chr5:135803104-135803131 chr5 135803104 135803131 L1M3 LINE + chr5:135812188-135812215 chr5 135812188 135812215 L1P1 LINE - chr5:135814087-135814105 chr5 135814087 135814105 (T)n Simple_repeat + chr5:135820592-135820619 chr5 135820592 135820619 (TTGTT)n Simple_repeat + chr5:135841218-135841248 chr5 135841218 135841248 (ATT)n Simple_repeat + chr5:135855897-135855960 chr5 135855897 135855960 L2c LINE - chr5:137880867-137880945 chr5 137880867 137880945 MIR3 SINE - chr5:138668684-138668801 chr5 138668684 138668801 MER5A DNA - chr5:138668797-138668982 chr5 138668797 138668982 7SK RNA - chr5:138669103-138669164 chr5 138669103 138669164 MER5A DNA - chr5:138727436-138727476 chr5 138727436 138727476 (AC)n Simple_repeat + chr5:139008931-139008958 chr5 139008931 139008958 (CAA)n Simple_repeat + chr5:139010887-139010898 chr5 139010887 139010898 (CTTT)n Simple_repeat + chr5:140105848-140105971 chr5 140105848 140105971 L1MC3 LINE + chr5:140478172-140478222 chr5 140478172 140478222 L2a LINE + chr5:141230189-141230218 chr5 141230189 141230218 (GGGGT)n Simple_repeat + chr5:141687567-141687625 chr5 141687567 141687625 MIRc SINE + chr5:141706120-141706155 chr5 141706120 141706155 G-rich Low_complexity + chr5:141706967-141707014 chr5 141706967 141707014 (ATTC)n Simple_repeat + chr5:141732888-141732914 chr5 141732888 141732914 (CCA)n Simple_repeat + chr5:141736063-141736086 chr5 141736063 141736086 (T)n Simple_repeat + chr5:141773231-141773259 chr5 141773231 141773259 L2a LINE - chr5:142088118-142088412 chr5 142088118 142088412 AluJb SINE + chr5:142089013-142089263 chr5 142089013 142089263 MLT2A2 LTR + chr5:142089979-142090154 chr5 142089979 142090154 MER102a DNA - chr5:142090635-142090765 chr5 142090635 142090765 LTR103b_Mam LTR - chr5:145136935-145137025 chr5 145136935 145137025 MER5A DNA + chr5:145137964-145138126 chr5 145137964 145138126 MER5B DNA - chr5:145486477-145486530 chr5 145486477 145486530 L2 LINE + chr5:147235232-147235783 chr5 147235232 147235783 MER44C DNA + chr5:147235779-147235988 chr5 147235779 147235988 Tigger7 DNA + chr5:147236441-147236576 chr5 147236441 147236576 L3 LINE + chr5:147238049-147238166 chr5 147238049 147238166 L3 LINE - chr5:147238203-147238645 chr5 147238203 147238645 MLT1H1 LTR + chr5:147238969-147239038 chr5 147238969 147239038 MIRc SINE - chr5:147239066-147239150 chr5 147239066 147239150 L1MC4 LINE + chr5:147239451-147239682 chr5 147239451 147239682 MIR SINE - chr5:147239848-147248601 chr5 147239848 147248601 HERVH-int LTR + chr5:147242605-147243411 chr5 147242605 147243411 MER57A1 LTR + chr5:147243569-147243816 chr5 147243569 147243816 LTR75 LTR - chr5:151195958-151196089 chr5 151195958 151196089 MIR3 SINE - chr5:154064461-154064499 chr5 154064461 154064499 (GGATAG)n Simple_repeat + chr5:1572778-1572995 chr5 1572778 1572995 Tigger4a DNA + chr5:1577804-1578461 chr5 1577804 1578461 L1M5 LINE - chr5:1577976-1578447 chr5 1577976 1578447 MER9a3 LTR - chr5:1578461-1585502 chr5 1578461 1585502 HERVK9-int LTR - chr5:1587464-1587651 chr5 1587464 1587651 MER9a3 LTR - chr5:1587711-1587806 chr5 1587711 1587806 L2a LINE + chr5:1588224-1588342 chr5 1588224 1588342 MER3 DNA - chr5:1609473-1609518 chr5 1609473 1609518 G-rich Low_complexity + chr5:1613994-1614045 chr5 1613994 1614045 FRAM SINE + chr5:1615835-1615872 chr5 1615835 1615872 GA-rich Low_complexity + chr5:1626187-1626234 chr5 1626187 1626234 MADE1 DNA + chr5:1628598-1628629 chr5 1628598 1628629 (AAAC)n Simple_repeat + chr5:1629201-1629272 chr5 1629201 1629272 AluJo SINE + chr5:1631210-1631304 chr5 1631210 1631304 MIRb SINE - chr5:167974865-167974945 chr5 167974865 167974945 L1MA1 LINE + chr5:170188712-170188743 chr5 170188712 170188743 (CTCTCC)n Simple_repeat + chr5:170838216-170838478 chr5 170838216 170838478 AluSz SINE - chr5:170838478-170838574 chr5 170838478 170838574 MER105 DNA - chr5:172233609-172233623 chr5 172233609 172233623 (TTCTGTA)n Simple_repeat + chr5:173030919-173032088 chr5 173030919 173032088 MLT1J-int LTR + chr5:173031282-173031304 chr5 173031282 173031304 (T)n Simple_repeat + chr5:173034141-173034308 chr5 173034141 173034308 MER5A1 DNA + chr5:175055191-175055430 chr5 175055191 175055430 7SK RNA + chr5:176559790-176559843 chr5 176559790 176559843 G-rich Low_complexity + chr5:176560041-176560068 chr5 176560041 176560068 (GTG)n Simple_repeat + chr5:177038060-177038103 chr5 177038060 177038103 MER91C DNA + chr5:177059278-177059297 chr5 177059278 177059297 (TGC)n Simple_repeat + chr5:177097718-177097758 chr5 177097718 177097758 L2a LINE - chr5:177319552-177319574 chr5 177319552 177319574 (A)n Simple_repeat + chr5:177320382-177320399 chr5 177320382 177320399 (T)n Simple_repeat + chr5:177553172-177553478 chr5 177553172 177553478 AluSc8 SINE - chr5:177553530-177554103 chr5 177553530 177554103 MER34C2 LTR + chr5:180273801-180273859 chr5 180273801 180273859 L2a LINE + chr5:180634754-180634830 chr5 180634754 180634830 tRNA-Lys-AAG tRNA + chr5:180637636-180637939 chr5 180637636 180637939 AluSp SINE - chr5:180678442-180678476 chr5 180678442 180678476 (AAC)n Simple_repeat + chr5:180680483-180680706 chr5 180680483 180680706 MER20 DNA + chr5:180690760-180690883 chr5 180690760 180690883 L2a LINE + chr5:180726346-180726363 chr5 180726346 180726363 (A)n Simple_repeat + chr5:180728359-180728466 chr5 180728359 180728466 Charlie29b DNA + chr5:180728968-180729071 chr5 180728968 180729071 U6 snRNA + chr5:180729236-180729356 chr5 180729236 180729356 AluJr4 SINE + chr5:21463557-21463841 chr5 21463557 21463841 AluSx1 SINE - chr5:21465674-21465718 chr5 21465674 21465718 L1MA3 LINE - chr5:21473377-21473420 chr5 21473377 21473420 (T)n Simple_repeat + chr5:21500857-21500888 chr5 21500857 21500888 (CATT)n Simple_repeat + chr5:21503212-21503305 chr5 21503212 21503305 A-rich Low_complexity + chr5:25413671-25413943 chr5 25413671 25413943 AluSx SINE - chr5:25423631-25423730 chr5 25423631 25423730 Charlie15a DNA + chr5:25425708-25425881 chr5 25425708 25425881 MER58A DNA + chr5:25426201-25426350 chr5 25426201 25426350 MER5B DNA - chr5:25426846-25427019 chr5 25426846 25427019 AluSp SINE - chr5:25427213-25427352 chr5 25427213 25427352 MER104 DNA - chr5:25430178-25430207 chr5 25430178 25430207 (AC)n Simple_repeat + chr5:25431401-25431756 chr5 25431401 25431756 MER2 DNA - chr5:25431897-25432192 chr5 25431897 25432192 AluSx1 SINE - chr5:25432673-25434476 chr5 25432673 25434476 L1MEd LINE - chr5:25433911-25434220 chr5 25433911 25434220 AluY SINE - chr5:25434741-25436929 chr5 25434741 25436929 L1MC1 LINE + chr5:25438395-25438718 chr5 25438395 25438718 AluSp SINE - chr5:25439224-25439408 chr5 25439224 25439408 MER20 DNA - chr5:25441980-25442264 chr5 25441980 25442264 MLT1A LTR + chr5:25442305-25443504 chr5 25442305 25443504 L1M4c LINE + chr5:25442868-25442963 chr5 25442868 25442963 L1PA3 LINE + chr5:25443207-25443350 chr5 25443207 25443350 L1MDa LINE + chr5:25443903-25445100 chr5 25443903 25445100 L1MEf LINE - chr5:25444256-25444289 chr5 25444256 25444289 (TG)n Simple_repeat + chr5:25445931-25446330 chr5 25445931 25446330 LTR7 LTR - chr5:27471670-27479936 chr5 27471670 27479936 L1MEf LINE + chr5:27472180-27478080 chr5 27472180 27478080 MER61-int LTR + chr5:27478685-27479483 chr5 27478685 27479483 L1PA3 LINE + chr5:27479936-27480037 chr5 27479936 27480037 L2a LINE + chr5:27481651-27481776 chr5 27481651 27481776 MIRb SINE + chr5:27482599-27482802 chr5 27482599 27482802 MIR SINE - chr5:27483295-27483346 chr5 27483295 27483346 (TA)n Simple_repeat + chr5:27484669-27484828 chr5 27484669 27484828 AluSq2 SINE - chr5:27487236-27487323 chr5 27487236 27487323 GA-rich Low_complexity + chr5:29948934-29949169 chr5 29948934 29949169 7SK RNA + chr5:34160908-34160952 chr5 34160908 34160952 GA-rich Low_complexity + chr5:34165092-34165551 chr5 34165092 34165551 MLT2B3 LTR + chr5:34166078-34166142 chr5 34166078 34166142 U4 snRNA - chr5:34168372-34168417 chr5 34168372 34168417 (TG)n Simple_repeat + chr5:34168953-34169338 chr5 34168953 34169338 MLT1A1 LTR + chr5:34174564-34174643 chr5 34174564 34174643 (TTCTCC)n Simple_repeat + chr5:34174570-34174608 chr5 34174570 34174608 (TTCCCTC)n Simple_repeat + chr5:34176961-34176994 chr5 34176961 34176994 (ATGA)n Simple_repeat + chr5:34208507-34208656 chr5 34208507 34208656 MER20 DNA - chr5:34235641-34235670 chr5 34235641 34235670 (T)n Simple_repeat + chr5:36871813-36872043 chr5 36871813 36872043 MER112 DNA - chr5:36872467-36872775 chr5 36872467 36872775 AluY SINE + chr5:36874791-36874835 chr5 36874791 36874835 L2a LINE + chr5:36874836-36874962 chr5 36874836 36874962 MamSINE1 SINE - chr5:36875202-36875631 chr5 36875202 36875631 L2a LINE - chr5:43288935-43289024 chr5 43288935 43289024 L3 LINE - chr5:43289256-43289384 chr5 43289256 43289384 L2c LINE + chr5:44744163-44744182 chr5 44744163 44744182 (CA)n Simple_repeat + chr5:44746550-44746578 chr5 44746550 44746578 (AT)n Simple_repeat + chr5:44751575-44751594 chr5 44751575 44751594 (T)n Simple_repeat + chr5:44754140-44754163 chr5 44754140 44754163 (T)n Simple_repeat + chr5:44780197-44780233 chr5 44780197 44780233 (GT)n Simple_repeat + chr5:44800889-44800916 chr5 44800889 44800916 (TC)n Simple_repeat + chr5:44801009-44801041 chr5 44801009 44801041 (TAGA)n Simple_repeat + chr5:44803479-44803549 chr5 44803479 44803549 MIR SINE - chr5:44815642-44815940 chr5 44815642 44815940 AluSz6 SINE + chr5:44816126-44816237 chr5 44816126 44816237 L2a LINE + chr5:44816305-44816608 chr5 44816305 44816608 AluSp SINE - chr5:44816854-44817210 chr5 44816854 44817210 L2 LINE + chr5:44817652-44818008 chr5 44817652 44818008 MLT1A0 LTR + chr5:44819226-44819458 chr5 44819226 44819458 Charlie8 DNA + chr5:44819813-44820093 chr5 44819813 44820093 AluSz SINE - chr5:44820393-44821086 chr5 44820393 44821086 L1MEg LINE + chr5:44821173-44821501 chr5 44821173 44821501 MLT1F2 LTR - chr5:44822093-44822557 chr5 44822093 44822557 LTR42 LTR + chr5:44824362-44824605 chr5 44824362 44824605 L3 LINE - chr5:44824605-44826575 chr5 44824605 44826575 L1PA4 LINE - chr5:44826633-44826688 chr5 44826633 44826688 (T)n Simple_repeat + chr5:44826713-44826925 chr5 44826713 44826925 L3 LINE - chr5:44826935-44827044 chr5 44826935 44827044 MIRb SINE - chr5:44827383-44827408 chr5 44827383 44827408 (T)n Simple_repeat + chr5:44827731-44828629 chr5 44827731 44828629 L1ME3Cz LINE + chr5:60166068-60166145 chr5 60166068 60166145 L2a LINE - chr5:60449897-60451791 chr5 60449897 60451791 L1PA6 LINE - chr5:64315542-64315585 chr5 64315542 64315585 MER5A DNA - chr5:64885218-64885287 chr5 64885218 64885287 U2 snRNA + chr5:6848336-6848575 chr5 6848336 6848575 7SK RNA - chr5:68506362-68506661 chr5 68506362 68506661 AluSz SINE - chr5:68507504-68508033 chr5 68507504 68508033 MLT1J-int LTR - chr5:68507692-68507827 chr5 68507692 68507827 FLAM_C SINE - chr5:68508758-68508821 chr5 68508758 68508821 HERV16-int LTR + chr5:68508872-68509029 chr5 68508872 68509029 FRAM SINE + chr5:68890263-68890305 chr5 68890263 68890305 (AC)n Simple_repeat + chr5:68891431-68891470 chr5 68891431 68891470 (AAC)n Simple_repeat + chr5:68891768-68891779 chr5 68891768 68891779 (AAC)n Simple_repeat + chr5:68891781-68892207 chr5 68891781 68892207 LTR16D1 LTR - chr5:68892936-68893050 chr5 68892936 68893050 MER102a DNA - chr5:68893056-68893123 chr5 68893056 68893123 L1ME4b LINE + chr5:68893228-68893545 chr5 68893228 68893545 AluJr SINE - chr5:68894115-68894401 chr5 68894115 68894401 AluJr SINE - chr5:68984411-68987847 chr5 68984411 68987847 MER110 LTR + chr5:68987154-68987190 chr5 68987154 68987190 A-rich Low_complexity + chr5:68990989-68991059 chr5 68990989 68991059 MER47A DNA + chr5:68994769-68996690 chr5 68994769 68996690 MLT1D-int LTR - chr5:68995224-68995251 chr5 68995224 68995251 (GTTT)n Simple_repeat + chr5:68997051-68997084 chr5 68997051 68997084 (T)n Simple_repeat + chr5:69149793-69149828 chr5 69149793 69149828 (A)n Simple_repeat + chr5:69151628-69151655 chr5 69151628 69151655 (AAAC)n Simple_repeat + chr5:69159693-69159729 chr5 69159693 69159729 (TTTTTG)n Simple_repeat + chr5:69171149-69171213 chr5 69171149 69171213 LTR79 LTR + chr5:69172133-69172200 chr5 69172133 69172200 MADE1 DNA - chr5:69176342-69176376 chr5 69176342 69176376 (ATTC)n Simple_repeat + chr5:69180050-69180175 chr5 69180050 69180175 L1PA13 LINE - chr5:69215628-69215655 chr5 69215628 69215655 (TTCA)n Simple_repeat + chr5:69217976-69218069 chr5 69217976 69218069 A-rich Low_complexity + chr5:69218174-69218234 chr5 69218174 69218234 Alu SINE + chr5:69218597-69218786 chr5 69218597 69218786 ERVL-E-int LTR - chr5:69219183-69219436 chr5 69219183 69219436 MLT2D LTR - chr5:69219451-69219497 chr5 69219451 69219497 (AT)n Simple_repeat + chr5:69219811-69219872 chr5 69219811 69219872 (TAATA)n Simple_repeat + chr5:69224329-69224552 chr5 69224329 69224552 MIRb SINE + chr5:69225048-69225638 chr5 69225048 69225638 L2c LINE + chr5:69225068-69225424 chr5 69225068 69225424 MSTB LTR - chr5:69231523-69231901 chr5 69231523 69231901 THE1C LTR - chr5:69235107-69235147 chr5 69235107 69235147 (TTTTG)n Simple_repeat + chr5:69272086-69272133 chr5 69272086 69272133 (T)n Simple_repeat + chr5:69281327-69281377 chr5 69281327 69281377 GA-rich Low_complexity + chr5:69428450-69428501 chr5 69428450 69428501 (TCTTTC)n Simple_repeat + chr5:69437274-69437393 chr5 69437274 69437393 L2a LINE - chr5:69437703-69437750 chr5 69437703 69437750 A-rich Low_complexity + chr5:69477895-69478273 chr5 69477895 69478273 THE1C LTR + chr5:69479295-69479324 chr5 69479295 69479324 (TG)n Simple_repeat + chr5:69480990-69481046 chr5 69480990 69481046 L1P4 LINE + chr5:69482916-69483295 chr5 69482916 69483295 L1PA13 LINE - chr5:69483338-69483372 chr5 69483338 69483372 A-rich Low_complexity + chr5:69483372-69483690 chr5 69483372 69483690 AluSz SINE + chr5:69484351-69484707 chr5 69484351 69484707 MSTB LTR + chr5:69485223-69485446 chr5 69485223 69485446 MIRb SINE - chr5:69489903-69489964 chr5 69489903 69489964 (TATTA)n Simple_repeat + chr5:69490278-69490324 chr5 69490278 69490324 (AT)n Simple_repeat + chr5:69490339-69490592 chr5 69490339 69490592 MLT2D LTR + chr5:69490989-69491178 chr5 69490989 69491178 ERVL-E-int LTR + chr5:69491541-69491601 chr5 69491541 69491601 Alu SINE - chr5:69491706-69491799 chr5 69491706 69491799 (CTTTTCC)n Simple_repeat + chr5:69493872-69494120 chr5 69493872 69494120 AluJo SINE + chr5:69494120-69494147 chr5 69494120 69494147 (TGAA)n Simple_repeat + chr5:69495230-69495536 chr5 69495230 69495536 AluSz SINE + chr5:69517198-69517300 chr5 69517198 69517300 MER5A DNA + chr5:69517292-69517349 chr5 69517292 69517349 MIR3 SINE + chr5:69517945-69518286 chr5 69517945 69518286 AluSz6 SINE + chr5:69522078-69522358 chr5 69522078 69522358 AluSx SINE - chr5:69553654-69553721 chr5 69553654 69553721 MADE1 DNA + chr5:69554641-69554705 chr5 69554641 69554705 LTR79 LTR - chr5:69556909-69556964 chr5 69556909 69556964 (AC)n Simple_repeat + chr5:69564150-69567587 chr5 69564150 69567587 MER110 LTR + chr5:69566894-69566930 chr5 69566894 69566930 A-rich Low_complexity + chr5:69570729-69570799 chr5 69570729 69570799 MER47A DNA + chr5:69570870-69570911 chr5 69570870 69570911 (AC)n Simple_repeat + chr5:69574507-69576428 chr5 69574507 69576428 MLT1D-int LTR - chr5:69574962-69574989 chr5 69574962 69574989 (GTTT)n Simple_repeat + chr5:69576789-69576821 chr5 69576789 69576821 (T)n Simple_repeat + chr5:69744039-69744471 chr5 69744039 69744471 LTR87 LTR + chr5:69745409-69745439 chr5 69745409 69745439 (AC)n Simple_repeat + chr5:69746569-69746608 chr5 69746569 69746608 (AAC)n Simple_repeat + chr5:69746906-69746917 chr5 69746906 69746917 (AAC)n Simple_repeat + chr5:69746919-69747345 chr5 69746919 69747345 LTR16D1 LTR - chr5:69748076-69748188 chr5 69748076 69748188 MER102a DNA - chr5:69748194-69748261 chr5 69748194 69748261 L1ME4b LINE + chr5:69748366-69748689 chr5 69748366 69748689 AluJr SINE - chr5:69749259-69749545 chr5 69749259 69749545 AluJr SINE - chr5:69813588-69813690 chr5 69813588 69813690 MER5A DNA + chr5:69813682-69813739 chr5 69813682 69813739 MIR3 SINE + chr5:69814335-69814688 chr5 69814335 69814688 AluSz6 SINE + chr5:69841147-69841302 chr5 69841147 69841302 MER20 DNA - chr5:69842056-69842181 chr5 69842056 69842181 L1PA13 LINE + chr5:69845856-69845890 chr5 69845856 69845890 (AATG)n Simple_repeat + chr5:69849990-69850057 chr5 69849990 69850057 MADE1 DNA + chr5:69850977-69851041 chr5 69850977 69851041 LTR79 LTR - chr5:69859714-69863151 chr5 69859714 69863151 MER110 LTR + chr5:69862458-69862494 chr5 69862458 69862494 A-rich Low_complexity + chr5:69866292-69866362 chr5 69866292 69866362 MER47A DNA + chr5:69866433-69866486 chr5 69866433 69866486 (AC)n Simple_repeat + chr5:69872363-69872396 chr5 69872363 69872396 (T)n Simple_repeat + chr5:70024942-70024976 chr5 70024942 70024976 (A)n Simple_repeat + chr5:70025287-70027258 chr5 70025287 70027258 MLT1D-int LTR + chr5:70026776-70026803 chr5 70026776 70026803 (AAAC)n Simple_repeat + chr5:70034841-70034877 chr5 70034841 70034877 (TTTTTG)n Simple_repeat + chr5:70044806-70044858 chr5 70044806 70044858 (TG)n Simple_repeat + chr5:70047062-70047126 chr5 70047062 70047126 LTR79 LTR + chr5:70048046-70048113 chr5 70048046 70048113 MADE1 DNA - chr5:70090676-70090703 chr5 70090676 70090703 (TTCA)n Simple_repeat + chr5:70093025-70093118 chr5 70093025 70093118 A-rich Low_complexity + chr5:70093223-70093283 chr5 70093223 70093283 Alu SINE + chr5:70093646-70093835 chr5 70093646 70093835 ERVL-E-int LTR - chr5:70094232-70094485 chr5 70094232 70094485 MLT2D LTR - chr5:70094500-70094546 chr5 70094500 70094546 (AT)n Simple_repeat + chr5:70094860-70094921 chr5 70094860 70094921 (TAATA)n Simple_repeat + chr5:70099378-70099601 chr5 70099378 70099601 MIRb SINE + chr5:70100097-70100687 chr5 70100097 70100687 L2c LINE + chr5:70100117-70100473 chr5 70100117 70100473 MSTB LTR - chr5:70105507-70105546 chr5 70105507 70105546 (AC)n Simple_repeat + chr5:70106563-70106941 chr5 70106563 70106941 THE1C LTR - chr5:70110147-70110187 chr5 70110147 70110187 (TTTTG)n Simple_repeat + chr5:70145579-70145611 chr5 70145579 70145611 A-rich Low_complexity + chr5:70156410-70156460 chr5 70156410 70156460 GA-rich Low_complexity + chr5:70325108-70325131 chr5 70325108 70325131 A-rich Low_complexity + chr5:70325131-70325451 chr5 70325131 70325451 AluJr SINE + chr5:70325987-70326305 chr5 70325987 70326305 AluJr SINE + chr5:70326419-70326486 chr5 70326419 70326486 L1ME4b LINE - chr5:70326492-70326606 chr5 70326492 70326606 MER102a DNA + chr5:70327335-70327761 chr5 70327335 70327761 LTR16D1 LTR + chr5:70327763-70327774 chr5 70327763 70327774 (TTG)n Simple_repeat + chr5:70328070-70328109 chr5 70328070 70328109 (TTG)n Simple_repeat + chr5:70329239-70329277 chr5 70329239 70329277 (GT)n Simple_repeat + chr5:70479670-70479717 chr5 70479670 70479717 (TG)n Simple_repeat + chr5:70483730-70483764 chr5 70483730 70483764 A-rich Low_complexity + chr5:70485626-70485849 chr5 70485626 70485849 MIRb SINE - chr5:70490293-70490354 chr5 70490293 70490354 (TATTA)n Simple_repeat + chr5:70490668-70490714 chr5 70490668 70490714 (AT)n Simple_repeat + chr5:70490739-70490982 chr5 70490739 70490982 MLT2D LTR + chr5:70491379-70491568 chr5 70491379 70491568 ERVL-E-int LTR + chr5:70491931-70491991 chr5 70491931 70491991 Alu SINE - chr5:70492096-70492189 chr5 70492096 70492189 (CTTTTCC)n Simple_repeat + chr5:70494511-70494538 chr5 70494511 70494538 (TGAA)n Simple_repeat + chr5:70517562-70517664 chr5 70517562 70517664 MER5A DNA + chr5:70517656-70517713 chr5 70517656 70517713 MIR3 SINE + chr5:70518309-70518658 chr5 70518309 70518658 AluSz6 SINE + chr5:70518591-70518630 chr5 70518591 70518630 (AAAC)n Simple_repeat + chr5:70522431-70522701 chr5 70522431 70522701 AluSx SINE - chr5:70563861-70567119 chr5 70563861 70567119 MER110 LTR + chr5:70566426-70566462 chr5 70566426 70566462 A-rich Low_complexity + chr5:70570261-70570331 chr5 70570261 70570331 Tigger5 DNA + chr5:70574049-70575970 chr5 70574049 70575970 MLT1D-int LTR - chr5:70574504-70574531 chr5 70574504 70574531 (GTTT)n Simple_repeat + chr5:70576331-70576364 chr5 70576331 70576364 (T)n Simple_repeat + chr5:71655441-71655574 chr5 71655441 71655574 BSR/Beta Satellite + chr5:71655593-71655660 chr5 71655593 71655660 MIRc SINE - chr5:72877884-72877992 chr5 72877884 72877992 MIRb SINE - chr5:74322432-74322614 chr5 74322432 74322614 MIRc SINE - chr5:74327197-74327396 chr5 74327197 74327396 MER58A DNA - chr5:74328697-74328748 chr5 74328697 74328748 (GT)n Simple_repeat + chr5:74331252-74331401 chr5 74331252 74331401 MIRb SINE + chr5:74331807-74332049 chr5 74331807 74332049 MER8 DNA - chr5:74332096-74332313 chr5 74332096 74332313 MIR SINE - chr5:74335222-74335458 chr5 74335222 74335458 MIR SINE - chr5:74336008-74336101 chr5 74336008 74336101 AluSx4 SINE - chr5:74336288-74336465 chr5 74336288 74336465 MIRc SINE + chr5:74337509-74337535 chr5 74337509 74337535 (AAC)n Simple_repeat + chr5:74339166-74339446 chr5 74339166 74339446 MLT1J LTR + chr5:74340278-74340360 chr5 74340278 74340360 MIRb SINE + chr5:74340631-74340684 chr5 74340631 74340684 L1MC4 LINE + chr5:74341518-74341595 chr5 74341518 74341595 L2a LINE - chr5:74343191-74343384 chr5 74343191 74343384 MER110A LTR - chr5:74344350-74344393 chr5 74344350 74344393 A-rich Low_complexity + chr5:74344727-74344824 chr5 74344727 74344824 MER5A DNA - chr5:74345592-74345728 chr5 74345592 74345728 MIRc SINE + chr5:74345749-74345985 chr5 74345749 74345985 MIR SINE - chr5:74347395-74347427 chr5 74347395 74347427 (CCCTCT)n Simple_repeat + chr5:74348063-74348100 chr5 74348063 74348100 (A)n Simple_repeat + chr5:74349668-74349786 chr5 74349668 74349786 MIR3 SINE - chr5:74659056-74659160 chr5 74659056 74659160 MER5A DNA - chr5:76383427-76383552 chr5 76383427 76383552 MLT1I LTR - chr5:76383603-76383742 chr5 76383603 76383742 MER63B DNA - chr5:76384516-76384552 chr5 76384516 76384552 (GCTCTTCT)n Simple_repeat + chr5:76392843-76392894 chr5 76392843 76392894 (TTCCTTT)n Simple_repeat + chr5:76412029-76412049 chr5 76412029 76412049 (TA)n Simple_repeat + chr5:76414117-76414141 chr5 76414117 76414141 (GTT)n Simple_repeat + chr5:79287418-79287453 chr5 79287418 79287453 L2b LINE + chr5:79295482-79295548 chr5 79295482 79295548 X6a_DNA DNA + chr5:80570434-80570472 chr5 80570434 80570472 (AC)n Simple_repeat + chr5:80589051-80589082 chr5 80589051 80589082 (AG)n Simple_repeat + chr5:80592582-80592643 chr5 80592582 80592643 L2c LINE + chr5:80593911-80593986 chr5 80593911 80593986 MIRb SINE + chr5:80594757-80594885 chr5 80594757 80594885 L1MD2 LINE + chr5:80597223-80597306 chr5 80597223 80597306 L2b LINE + chr5:80609915-80609932 chr5 80609915 80609932 (TG)n Simple_repeat + chr5:81552449-81552534 chr5 81552449 81552534 MIR3 SINE + chr5:81554022-81554050 chr5 81554022 81554050 (TTTGT)n Simple_repeat + chr5:82878371-82878520 chr5 82878371 82878520 MIR SINE - chr5:87564959-87565040 chr5 87564959 87565040 G-rich Low_complexity + chr5:87565577-87565661 chr5 87565577 87565661 (TAGA)n Simple_repeat + chr5:87566316-87566340 chr5 87566316 87566340 (T)n Simple_repeat + chr5:87567502-87567638 chr5 87567502 87567638 L2d LINE + chr5:87567852-87568140 chr5 87567852 87568140 AluJr SINE + chr5:87568153-87568529 chr5 87568153 87568529 MLT1A0 LTR + chr5:87568668-87568695 chr5 87568668 87568695 (TTTA)n Simple_repeat + chr5:87568706-87568989 chr5 87568706 87568989 AluSz6 SINE + chr5:87569369-87569892 chr5 87569369 87569892 L2b LINE - chr5:87570074-87570193 chr5 87570074 87570193 5S rRNA - chr5:87571882-87572013 chr5 87571882 87572013 AluJr SINE + chr5:87573605-87574064 chr5 87573605 87574064 L1MB8 LINE + chr5:87576617-87576734 chr5 87576617 87576734 AluJr SINE - chr5:87579727-87579837 chr5 87579727 87579837 MER94 DNA + chr5:87581975-87582409 chr5 87581975 87582409 LTR54 LTR + chr5:87583075-87583516 chr5 87583075 87583516 MLT1C2 LTR + chr5:87584017-87584099 chr5 87584017 87584099 (TAGA)n Simple_repeat + chr5:87586346-87586419 chr5 87586346 87586419 L1ME4b LINE + chr5:87587069-87587167 chr5 87587069 87587167 MIR3 SINE + chr5:87594873-87594919 chr5 87594873 87594919 (TTG)n Simple_repeat + chr5:87595888-87595936 chr5 87595888 87595936 (ATC)n Simple_repeat + chr5:87611337-87611374 chr5 87611337 87611374 (ATGA)n Simple_repeat + chr5:87618909-87618960 chr5 87618909 87618960 (AT)n Simple_repeat + chr5:87619655-87619736 chr5 87619655 87619736 LFSINE_Vert SINE + chr5:87620139-87620165 chr5 87620139 87620165 (AAAAC)n Simple_repeat + chr5:87621049-87621079 chr5 87621049 87621079 A-rich Low_complexity + chr5:87622259-87622292 chr5 87622259 87622292 (TG)n Simple_repeat + chr5:87624390-87624465 chr5 87624390 87624465 L3b LINE + chr5:87625584-87625619 chr5 87625584 87625619 A-rich Low_complexity + chr5:87635704-87635735 chr5 87635704 87635735 MADE1 DNA - chr5:87641032-87641083 chr5 87641032 87641083 A-rich Low_complexity + chr5:87644662-87644687 chr5 87644662 87644687 (AAAGA)n Simple_repeat + chr5:87660588-87660617 chr5 87660588 87660617 (T)n Simple_repeat + chr5:87662540-87662572 chr5 87662540 87662572 (A)n Simple_repeat + chr5:87663123-87663153 chr5 87663123 87663153 (AACAA)n Simple_repeat + chr5:87663226-87663310 chr5 87663226 87663310 MLT1L LTR + chr5:87664723-87664782 chr5 87664723 87664782 (TACA)n Simple_repeat + chr5:87664737-87664767 chr5 87664737 87664767 (CA)n Simple_repeat + chr5:87675431-87675494 chr5 87675431 87675494 (TTTAT)n Simple_repeat + chr5:87680096-87680147 chr5 87680096 87680147 L2c LINE + chr5:87681335-87681364 chr5 87681335 87681364 A-rich Low_complexity + chr5:87684561-87684589 chr5 87684561 87684589 (ATA)n Simple_repeat + chr5:87693430-87693467 chr5 87693430 87693467 (CA)n Simple_repeat + chr5:87693915-87693947 chr5 87693915 87693947 (AATAA)n Simple_repeat + chr5:87697413-87697444 chr5 87697413 87697444 (GGTG)n Simple_repeat + chr5:87705075-87705140 chr5 87705075 87705140 (TTCTT)n Simple_repeat + chr5:87706083-87706104 chr5 87706083 87706104 (T)n Simple_repeat + chr5:87707500-87707538 chr5 87707500 87707538 (CAA)n Simple_repeat + chr5:87707774-87707806 chr5 87707774 87707806 (ATT)n Simple_repeat + chr5:87713116-87713165 chr5 87713116 87713165 L2a LINE + chr5:87717446-87717482 chr5 87717446 87717482 A-rich Low_complexity + chr5:87719304-87719366 chr5 87719304 87719366 (TTA)n Simple_repeat + chr5:87723519-87723575 chr5 87723519 87723575 (CACACA)n Simple_repeat + chr5:87731228-87731290 chr5 87731228 87731290 (GAAG)n Simple_repeat + chr5:87731326-87731347 chr5 87731326 87731347 A-rich Low_complexity + chr5:89706629-89706731 chr5 89706629 89706731 L2d LINE - chr5:90690505-90690520 chr5 90690505 90690520 (TAT)n Simple_repeat + chr5:90713400-90713430 chr5 90713400 90713430 (AAACC)n Simple_repeat + chr5:90713964-90713989 chr5 90713964 90713989 (AC)n Simple_repeat + chr5:94039691-94039711 chr5 94039691 94039711 (A)n Simple_repeat + chr5:9548184-9548209 chr5 9548184 9548209 (A)n Simple_repeat + chr5:9548516-9548566 chr5 9548516 9548566 MIRb SINE + chr5:9548727-9548749 chr5 9548727 9548749 (TTTG)n Simple_repeat + chr5:97533999-97534025 chr5 97533999 97534025 (AAAAC)n Simple_repeat + chr5:97547944-97547952 chr5 97547944 97547952 (TCATTC)n Simple_repeat + chr5:97656184-97656221 chr5 97656184 97656221 (CA)n Simple_repeat + chr5:97665631-97665676 chr5 97665631 97665676 (GAGG)n Simple_repeat + chr5:97665676-97665713 chr5 97665676 97665713 (AGGA)n Simple_repeat + chr5:97675620-97675646 chr5 97675620 97675646 (TTTGT)n Simple_repeat + chr5:97676110-97676148 chr5 97676110 97676148 (AAGAAA)n Simple_repeat + chr5:97684888-97684934 chr5 97684888 97684934 FAM SINE + chr5:97692904-97692937 chr5 97692904 97692937 (ATT)n Simple_repeat + chr5:97708651-97708689 chr5 97708651 97708689 (TA)n Simple_repeat + chr5:97709905-97709947 chr5 97709905 97709947 A-rich Low_complexity + chr5:97724641-97724683 chr5 97724641 97724683 (AC)n Simple_repeat + chr5:97726950-97726988 chr5 97726950 97726988 (ATTTTT)n Simple_repeat + chr5:97727501-97727518 chr5 97727501 97727518 (T)n Simple_repeat + chr5:97735802-97735822 chr5 97735802 97735822 (CT)n Simple_repeat + chr5:97735917-97735952 chr5 97735917 97735952 (TG)n Simple_repeat + chr5:97753042-97753081 chr5 97753042 97753081 MER2B DNA + chr5:97753992-97754033 chr5 97753992 97754033 MER2B DNA + chr5:97754033-97754086 chr5 97754033 97754086 L1MD LINE + chr5:97764449-97764484 chr5 97764449 97764484 (ACAC)n Simple_repeat + chr5:97765595-97765638 chr5 97765595 97765638 (AATTTAA)n Simple_repeat + chr5:97769478-97769504 chr5 97769478 97769504 (AAAT)n Simple_repeat + chr5:97780994-97781034 chr5 97780994 97781034 (GATT)n Simple_repeat + chr5:97781102-97781142 chr5 97781102 97781142 (TATTTT)n Simple_repeat + chr5:97781690-97781718 chr5 97781690 97781718 (TATAAT)n Simple_repeat + chr5:97782006-97782017 chr5 97782006 97782017 (TATAAT)n Simple_repeat + chr5:97782274-97782308 chr5 97782274 97782308 MamRTE1 LINE + chr5:97783331-97783363 chr5 97783331 97783363 (TATA)n Simple_repeat + chr5:97794698-97794730 chr5 97794698 97794730 (TTGG)n Simple_repeat + chr5:97807873-97807914 chr5 97807873 97807914 L2a LINE + chr5:97816013-97816035 chr5 97816013 97816035 (TG)n Simple_repeat + chr5:97817829-97817860 chr5 97817829 97817860 (AAC)n Simple_repeat + chr5:97835249-97835296 chr5 97835249 97835296 MADE1 DNA + chr5:97835299-97835329 chr5 97835299 97835329 (AATA)n Simple_repeat + chr5:97837966-97838003 chr5 97837966 97838003 (TATTAA)n Simple_repeat + chr5:97844713-97844746 chr5 97844713 97844746 (TTG)n Simple_repeat + chr5:97846854-97846882 chr5 97846854 97846882 (TTTTA)n Simple_repeat + chr5:97849632-97849672 chr5 97849632 97849672 (CA)n Simple_repeat + chr5:97849874-97849905 chr5 97849874 97849905 (TATT)n Simple_repeat + chr5:97852865-97852890 chr5 97852865 97852890 (A)n Simple_repeat + chr5:97854463-97854485 chr5 97854463 97854485 (TC)n Simple_repeat + chr5:97854798-97854822 chr5 97854798 97854822 (A)n Simple_repeat + chr5:97858753-97858782 chr5 97858753 97858782 (AAAAT)n Simple_repeat + chr5:97859319-97859357 chr5 97859319 97859357 (TGTTT)n Simple_repeat + chr5:97861212-97861245 chr5 97861212 97861245 (TTTAT)n Simple_repeat + chr5:97863216-97863269 chr5 97863216 97863269 MIR3 SINE - chr5:97870485-97870522 chr5 97870485 97870522 (TTA)n Simple_repeat + chr5:97870569-97870611 chr5 97870569 97870611 (ATAT)n Simple_repeat + chr5:97875971-97876032 chr5 97875971 97876032 L1MA4A LINE + chr5:97876061-97876109 chr5 97876061 97876109 AluJr SINE + chr5:97890595-97890611 chr5 97890595 97890611 (ATT)n Simple_repeat + chr5:97890883-97890900 chr5 97890883 97890900 (ATT)n Simple_repeat + chr5:97895205-97895234 chr5 97895205 97895234 (TG)n Simple_repeat + chr5:97914890-97914933 chr5 97914890 97914933 (CA)n Simple_repeat + chr5:97920184-97920237 chr5 97920184 97920237 MER5B DNA + chr5:97924537-97924593 chr5 97924537 97924593 (ACA)n Simple_repeat + chr5:97943441-97943486 chr5 97943441 97943486 L2c LINE + chr5:97947295-97947319 chr5 97947295 97947319 (AG)n Simple_repeat + chr5:97952733-97952764 chr5 97952733 97952764 A-rich Low_complexity + chr5:97956927-97956978 chr5 97956927 97956978 L1MC4 LINE - chr5:97970536-97970556 chr5 97970536 97970556 (A)n Simple_repeat + chr5:97972065-97972105 chr5 97972065 97972105 (TTTA)n Simple_repeat + chr5:97976649-97976710 chr5 97976649 97976710 MER91B DNA - chr5:97976957-97976995 chr5 97976957 97976995 (A)n Simple_repeat + chr5:97977319-97977363 chr5 97977319 97977363 (T)n Simple_repeat + chr5:97978158-97978199 chr5 97978158 97978199 (TTTA)n Simple_repeat + chr5:97980754-97980802 chr5 97980754 97980802 (GATA)n Simple_repeat + chr5:98013906-98013948 chr5 98013906 98013948 L2a LINE - chr5:98016253-98016284 chr5 98016253 98016284 (ATG)n Simple_repeat + chr5:98026070-98026107 chr5 98026070 98026107 (GT)n Simple_repeat + chr5:98026395-98026435 chr5 98026395 98026435 (TACTATA)n Simple_repeat + chr5:98044410-98044467 chr5 98044410 98044467 X24_LINE LINE + chr5:98048570-98048605 chr5 98048570 98048605 A-rich Low_complexity + chr5:98057715-98057746 chr5 98057715 98057746 (CT)n Simple_repeat + chr5:98077463-98077483 chr5 98077463 98077483 (AAT)n Simple_repeat + chr5:98084494-98084522 chr5 98084494 98084522 (AGGC)n Simple_repeat + chr5:98190829-98190857 chr5 98190829 98190857 (GGT)n Simple_repeat + chr5:98264365-98264405 chr5 98264365 98264405 G-rich Low_complexity + chr5:98718-98761 chr5 98718 98761 (TG)n Simple_repeat + chr5:99285-99328 chr5 99285 99328 (TA)n Simple_repeat + chr5:99417112-99417161 chr5 99417112 99417161 (TG)n Simple_repeat + chr5:99417166-99417210 chr5 99417166 99417210 GA-rich Low_complexity + chr5:99417837-99417880 chr5 99417837 99417880 A-rich Low_complexity + chr5:99437724-99437777 chr5 99437724 99437777 (TG)n Simple_repeat + chr5:99438703-99438778 chr5 99438703 99438778 L1MB3 LINE + chr5:99438778-99438817 chr5 99438778 99438817 (AG)n Simple_repeat + chr5:99438827-99438872 chr5 99438827 99438872 (AC)n Simple_repeat + chr5:99439534-99439603 chr5 99439534 99439603 A-rich Low_complexity + chr5:99448708-99448733 chr5 99448708 99448733 (AATA)n Simple_repeat + chr5:99451412-99451451 chr5 99451412 99451451 (TA)n Simple_repeat + chr5:99452973-99453079 chr5 99452973 99453079 (TA)n Simple_repeat + chr5:99456205-99456264 chr5 99456205 99456264 (TGTG)n Simple_repeat + chr5:99458056-99458098 chr5 99458056 99458098 (TG)n Simple_repeat + chr5:99460909-99460942 chr5 99460909 99460942 (AC)n Simple_repeat + chr5:99470323-99470366 chr5 99470323 99470366 (ATTTTT)n Simple_repeat + chr5:99470368-99470408 chr5 99470368 99470408 L1PA3 LINE + chr5:99470687-99470740 chr5 99470687 99470740 (TTTG)n Simple_repeat + chr5:99476964-99477017 chr5 99476964 99477017 (TTTTAAT)n Simple_repeat + chr5:99502070-99502117 chr5 99502070 99502117 (AT)n Simple_repeat + chr5:99504471-99504501 chr5 99504471 99504501 (AATG)n Simple_repeat + chr5:99507821-99507875 chr5 99507821 99507875 (A)n Simple_repeat + chr5:99508111-99508160 chr5 99508111 99508160 MIRb SINE + chr5:99509474-99509514 chr5 99509474 99509514 (AATGAA)n Simple_repeat + chr5:99512854-99512917 chr5 99512854 99512917 (CA)n Simple_repeat + chr5:99522359-99522387 chr5 99522359 99522387 (TTTGT)n Simple_repeat + chr5:99525504-99525535 chr5 99525504 99525535 (AC)n Simple_repeat + chr5:99533972-99534009 chr5 99533972 99534009 (TTTGTT)n Simple_repeat + chr5:99534008-99534056 chr5 99534008 99534056 (TA)n Simple_repeat + chr5:99549526-99549590 chr5 99549526 99549590 (TTTATA)n Simple_repeat + chr5:99549838-99549886 chr5 99549838 99549886 (TTTATT)n Simple_repeat + chr5:99553966-99554037 chr5 99553966 99554037 L1PA5 LINE + chr5:99556785-99556822 chr5 99556785 99556822 A-rich Low_complexity + chr5:99557071-99557100 chr5 99557071 99557100 (TATAA)n Simple_repeat + chr5:99562976-99563013 chr5 99562976 99563013 MIRc SINE + chr5:99568187-99568230 chr5 99568187 99568230 (AC)n Simple_repeat + chr5:99575523-99575564 chr5 99575523 99575564 (TTTA)n Simple_repeat + chr5:99582702-99582757 chr5 99582702 99582757 L1ME3 LINE + chr5:99589964-99590013 chr5 99589964 99590013 L1M5 LINE + chr5:99597450-99597494 chr5 99597450 99597494 (TTCC)n Simple_repeat + chr5:99602776-99602849 chr5 99602776 99602849 (TTTTATA)n Simple_repeat + chr5:99606374-99606398 chr5 99606374 99606398 (T)n Simple_repeat + chr5:99606678-99606700 chr5 99606678 99606700 A-rich Low_complexity + chr5:99614936-99615007 chr5 99614936 99615007 L1MEd LINE + chr5:99615010-99615040 chr5 99615010 99615040 (AAAATC)n Simple_repeat + chr5:99638151-99638190 chr5 99638151 99638190 (TTACAA)n Simple_repeat + chr5:99642490-99642523 chr5 99642490 99642523 (AG)n Simple_repeat + chr5:99643524-99643549 chr5 99643524 99643549 (ACA)n Simple_repeat + chr5:99651722-99651760 chr5 99651722 99651760 (TA)n Simple_repeat + chr5:99651772-99651847 chr5 99651772 99651847 (TACA)n Simple_repeat + chr5:99651780-99651825 chr5 99651780 99651825 (TA)n Simple_repeat + chr5:99655492-99655552 chr5 99655492 99655552 Kanga1c DNA + chr5:99657092-99657147 chr5 99657092 99657147 MIR3 SINE + chr5:99657484-99657585 chr5 99657484 99657585 MIRc SINE + chr5:99662018-99662056 chr5 99662018 99662056 (ATTTT)n Simple_repeat + chr5:99662156-99662191 chr5 99662156 99662191 (GTGTAT)n Simple_repeat + chr5:99668871-99668898 chr5 99668871 99668898 (ATTTT)n Simple_repeat + chr5:99669680-99669733 chr5 99669680 99669733 L1M1 LINE + chr5:99678486-99678534 chr5 99678486 99678534 (TTA)n Simple_repeat + chr5:99679801-99679869 chr5 99679801 99679869 A-rich Low_complexity + chr5:99686884-99686928 chr5 99686884 99686928 (TGTCTTG)n Simple_repeat + chr5:99688319-99688348 chr5 99688319 99688348 (T)n Simple_repeat + chr5:99694621-99694656 chr5 99694621 99694656 A-rich Low_complexity + chr5:99696702-99696734 chr5 99696702 99696734 (AAT)n Simple_repeat + chr5:99708963-99709029 chr5 99708963 99709029 A-rich Low_complexity + chr5:99710408-99710520 chr5 99710408 99710520 AluSx4 SINE + chr5:99710937-99710994 chr5 99710937 99710994 MIR3 SINE + chr5:99736003-99736019 chr5 99736003 99736019 (AATT)n Simple_repeat + chr5:99778203-99778223 chr5 99778203 99778223 A-rich Low_complexity + chr5:99784646-99784677 chr5 99784646 99784677 (TG)n Simple_repeat + chr5:99814261-99814291 chr5 99814261 99814291 (TCCT)n Simple_repeat + chr5:99817047-99817077 chr5 99817047 99817077 (ATT)n Simple_repeat + chr5:99835894-99835923 chr5 99835894 99835923 (CAA)n Simple_repeat + chr5:99846544-99846568 chr5 99846544 99846568 (ACAA)n Simple_repeat + chr5:99847826-99847855 chr5 99847826 99847855 A-rich Low_complexity + chr5:99848462-99848490 chr5 99848462 99848490 (CA)n Simple_repeat + chr5:99869690-99869714 chr5 99869690 99869714 (GT)n Simple_repeat + chr6:101329980-101330262 chr6 101329980 101330262 L3 LINE + chr6:101330464-101330585 chr6 101330464 101330585 L2d LINE - chr6:105388911-105388949 chr6 105388911 105388949 G-rich Low_complexity + chr6:105393940-105393982 chr6 105393940 105393982 (ATATTAT)n Simple_repeat + chr6:105394999-105395293 chr6 105394999 105395293 AluSz SINE - chr6:105395645-105395662 chr6 105395645 105395662 (T)n Simple_repeat + chr6:105396061-105396357 chr6 105396061 105396357 AluSg SINE + chr6:105398013-105398052 chr6 105398013 105398052 (TTAAAA)n Simple_repeat + chr6:105399620-105399792 chr6 105399620 105399792 MIR3 SINE - chr6:105402327-105402376 chr6 105402327 105402376 (CTTT)n Simple_repeat + chr6:105402376-105402416 chr6 105402376 105402416 (TCTCT)n Simple_repeat + chr6:106808984-106809014 chr6 106808984 106809014 (CCT)n Simple_repeat + chr6:106810184-106810256 chr6 106810184 106810256 L2c LINE - chr6:106811796-106811823 chr6 106811796 106811823 (TCA)n Simple_repeat + chr6:106814691-106814736 chr6 106814691 106814736 (AGTTAT)n Simple_repeat + chr6:106816137-106816170 chr6 106816137 106816170 (AC)n Simple_repeat + chr6:106818050-106818087 chr6 106818050 106818087 (ATTATAA)n Simple_repeat + chr6:106821938-106822002 chr6 106821938 106822002 L2b LINE - chr6:106823260-106823299 chr6 106823260 106823299 (TAAG)n Simple_repeat + chr6:106825496-106825523 chr6 106825496 106825523 (TA)n Simple_repeat + chr6:106826468-106826525 chr6 106826468 106826525 MIRb SINE - chr6:106826664-106826701 chr6 106826664 106826701 (TCT)n Simple_repeat + chr6:106830425-106830476 chr6 106830425 106830476 AluYj4 SINE + chr6:106830476-106830504 chr6 106830476 106830504 (AATAA)n Simple_repeat + chr6:106837345-106837411 chr6 106837345 106837411 Helitron2Na_Mam RC? - chr6:106838246-106838310 chr6 106838246 106838310 (TCTCC)n Simple_repeat + chr6:106839803-106839846 chr6 106839803 106839846 (GT)n Simple_repeat + chr6:106843669-106843691 chr6 106843669 106843691 (AT)n Simple_repeat + chr6:106871126-106871149 chr6 106871126 106871149 (T)n Simple_repeat + chr6:106881593-106881660 chr6 106881593 106881660 (AT)n Simple_repeat + chr6:106881661-106881704 chr6 106881661 106881704 (ACAT)n Simple_repeat + chr6:106883047-106883063 chr6 106883047 106883063 (ATT)n Simple_repeat + chr6:106886489-106886531 chr6 106886489 106886531 MamTip2b DNA - chr6:106892852-106892883 chr6 106892852 106892883 (AACA)n Simple_repeat + chr6:106899280-106899321 chr6 106899280 106899321 (ATCT)n Simple_repeat + chr6:106901995-106902056 chr6 106901995 106902056 (TC)n Simple_repeat + chr6:106902224-106902251 chr6 106902224 106902251 (CCCA)n Simple_repeat + chr6:106902703-106902802 chr6 106902703 106902802 HY3 scRNA + chr6:106907116-106907151 chr6 106907116 106907151 (ATATAC)n Simple_repeat + chr6:106909678-106909714 chr6 106909678 106909714 (GCTGTG)n Simple_repeat + chr6:106913151-106913294 chr6 106913151 106913294 MIR3 SINE + chr6:106915591-106915732 chr6 106915591 106915732 MER46C DNA + chr6:106916413-106916570 chr6 106916413 106916570 AluJb SINE + chr6:106917466-106917499 chr6 106917466 106917499 (TTTGA)n Simple_repeat + chr6:106917759-106917822 chr6 106917759 106917822 L2 LINE - chr6:106918051-106918213 chr6 106918051 106918213 AluJb SINE + chr6:106918293-106918456 chr6 106918293 106918456 AluSg7 SINE + chr6:106918694-106918747 chr6 106918694 106918747 MIRb SINE - chr6:106921248-106921395 chr6 106921248 106921395 L1MC3 LINE + chr6:106922085-106922223 chr6 106922085 106922223 FRAM SINE + chr6:106922669-106922830 chr6 106922669 106922830 MER115 DNA + chr6:106924204-106924312 chr6 106924204 106924312 MIR3 SINE + chr6:106937715-106937754 chr6 106937715 106937754 (ATTTT)n Simple_repeat + chr6:106940351-106940446 chr6 106940351 106940446 GA-rich Low_complexity + chr6:106940831-106940866 chr6 106940831 106940866 (T)n Simple_repeat + chr6:106942539-106942581 chr6 106942539 106942581 (TAATTA)n Simple_repeat + chr6:106942747-106942790 chr6 106942747 106942790 A-rich Low_complexity + chr6:106944211-106944273 chr6 106944211 106944273 (TTAATAC)n Simple_repeat + chr6:106945503-106945645 chr6 106945503 106945645 MIRb SINE + chr6:106946008-106946085 chr6 106946008 106946085 L1M LINE + chr6:106947377-106947440 chr6 106947377 106947440 L1MA7 LINE - chr6:106949629-106949744 chr6 106949629 106949744 LTR90B LTR - chr6:106950701-106950849 chr6 106950701 106950849 Arthur1A DNA + chr6:106951487-106951533 chr6 106951487 106951533 L2a LINE + chr6:106952510-106952553 chr6 106952510 106952553 (TG)n Simple_repeat + chr6:106957610-106957677 chr6 106957610 106957677 MIR3 SINE + chr6:106959474-106959499 chr6 106959474 106959499 (AG)n Simple_repeat + chr6:107437259-107437291 chr6 107437259 107437291 (CACA)n Simple_repeat + chr6:107437442-107437480 chr6 107437442 107437480 G-rich Low_complexity + chr6:109577769-109577794 chr6 109577769 109577794 (T)n Simple_repeat + chr6:111217164-111217351 chr6 111217164 111217351 AluJb SINE - chr6:111217892-111218186 chr6 111217892 111218186 AluSz SINE - chr6:111219400-111219420 chr6 111219400 111219420 (TA)n Simple_repeat + chr6:111219632-111221314 chr6 111219632 111221314 L1M5 LINE - chr6:111221118-111221209 chr6 111221118 111221209 L1M3 LINE - chr6:111291848-111291924 chr6 111291848 111291924 MADE2 DNA + chr6:111292836-111292875 chr6 111292836 111292875 A-rich Low_complexity + chr6:111347417-111347704 chr6 111347417 111347704 AluJo SINE - chr6:111348079-111348271 chr6 111348079 111348271 AluSg4 SINE - chr6:111592673-111592805 chr6 111592673 111592805 X9b_DNA DNA + chr6:111593238-111594022 chr6 111593238 111594022 L1MA4 LINE - chr6:111593712-111594011 chr6 111593712 111594011 AluSp SINE - chr6:111594365-111594647 chr6 111594365 111594647 AluJr SINE - chr6:111594647-111596028 chr6 111594647 111596028 L1M2 LINE - chr6:111594927-111595222 chr6 111594927 111595222 AluJb SINE - chr6:111595222-111595343 chr6 111595222 111595343 AluJr4 SINE - chr6:111596109-111596398 chr6 111596109 111596398 AluJr SINE - chr6:111596960-111597538 chr6 111596960 111597538 L1MB3 LINE - chr6:111598683-111598796 chr6 111598683 111598796 L2a LINE - chr6:111599645-111599994 chr6 111599645 111599994 THE1B LTR + chr6:111600156-111600342 chr6 111600156 111600342 MER5B DNA - chr6:111804922-111804982 chr6 111804922 111804982 (GCGG)n Simple_repeat + chr6:111805680-111805775 chr6 111805680 111805775 MIR1_Amn SINE + chr6:111806039-111806302 chr6 111806039 111806302 X15_LINE LINE - chr6:111806428-111806532 chr6 111806428 111806532 MER5A DNA + chr6:111806949-111807069 chr6 111806949 111807069 MIRc SINE + chr6:111807494-111807586 chr6 111807494 111807586 L2b LINE - chr6:111807778-111807908 chr6 111807778 111807908 LTR67B LTR + chr6:111807911-111807985 chr6 111807911 111807985 MER63B DNA - chr6:111807988-111808095 chr6 111807988 111808095 FLAM_C SINE - chr6:111808442-111808547 chr6 111808442 111808547 MLT1N2 LTR + chr6:111809597-111809702 chr6 111809597 111809702 MER20B DNA - chr6:111809964-111810008 chr6 111809964 111810008 A-rich Low_complexity + chr6:111810170-111810405 chr6 111810170 111810405 AluJb SINE + chr6:111810519-111810578 chr6 111810519 111810578 FRAM SINE + chr6:111812141-111812168 chr6 111812141 111812168 (T)n Simple_repeat + chr6:111812182-111812299 chr6 111812182 111812299 FLAM_C SINE - chr6:111812696-111812780 chr6 111812696 111812780 MER20 DNA + chr6:111812774-111812860 chr6 111812774 111812860 MER20 DNA + chr6:111813452-111813615 chr6 111813452 111813615 LTR86A1 LTR - chr6:111813690-111813975 chr6 111813690 111813975 AluJo SINE + chr6:111814296-111814481 chr6 111814296 111814481 L1ME4a LINE - chr6:111815091-111815142 chr6 111815091 111815142 (TATT)n Simple_repeat + chr6:111817522-111817708 chr6 111817522 111817708 MIR SINE + chr6:111818008-111818101 chr6 111818008 111818101 MIRb SINE - chr6:111819183-111819233 chr6 111819183 111819233 (TTATATT)n Simple_repeat + chr6:111820449-111820638 chr6 111820449 111820638 MamRep1527 LTR - chr6:111821224-111821235 chr6 111821224 111821235 (GAACTA)n Simple_repeat + chr6:111821235-111821415 chr6 111821235 111821415 MER5A DNA + chr6:111821415-111821455 chr6 111821415 111821455 (GAACTA)n Simple_repeat + chr6:111822577-111822858 chr6 111822577 111822858 AluJr SINE + chr6:111823026-111823119 chr6 111823026 111823119 MER53 DNA + chr6:111823039-111823122 chr6 111823039 111823122 MER53 DNA - chr6:111823178-111823264 chr6 111823178 111823264 MER53 DNA + chr6:111835611-111835682 chr6 111835611 111835682 MIR3 SINE - chr6:111836977-111837029 chr6 111836977 111837029 X7A_LINE LINE + chr6:111837032-111837056 chr6 111837032 111837056 (TTTA)n Simple_repeat + chr6:111837966-111837995 chr6 111837966 111837995 (AC)n Simple_repeat + chr6:111838202-111838226 chr6 111838202 111838226 (AC)n Simple_repeat + chr6:111841968-111842037 chr6 111841968 111842037 Tigger2 DNA + chr6:111846819-111846848 chr6 111846819 111846848 (T)n Simple_repeat + chr6:111847519-111847547 chr6 111847519 111847547 (TAGA)n Simple_repeat + chr6:111849357-111849409 chr6 111849357 111849409 MADE1 DNA - chr6:111853528-111853579 chr6 111853528 111853579 A-rich Low_complexity + chr6:111854708-111854769 chr6 111854708 111854769 MIR1_Amn SINE + chr6:111855125-111855189 chr6 111855125 111855189 MIR3 SINE + chr6:111861814-111861837 chr6 111861814 111861837 (AT)n Simple_repeat + chr6:111865183-111865231 chr6 111865183 111865231 (TGAA)n Simple_repeat + chr6:111873837-111873861 chr6 111873837 111873861 (CTCC)n Simple_repeat + chr6:111877396-111877440 chr6 111877396 111877440 (GT)n Simple_repeat + chr6:114665779-114665832 chr6 114665779 114665832 UCON71_Crp Unknown - chr6:114674380-114674420 chr6 114674380 114674420 MER5A DNA - chr6:114676809-114676836 chr6 114676809 114676836 (ACA)n Simple_repeat + chr6:114678088-114678125 chr6 114678088 114678125 GA-rich Low_complexity + chr6:114743362-114743464 chr6 114743362 114743464 MIRc SINE + chr6:114784678-114784709 chr6 114784678 114784709 (TTTTG)n Simple_repeat + chr6:114787209-114787244 chr6 114787209 114787244 (TTTA)n Simple_repeat + chr6:126022993-126028909 chr6 126022993 126028909 HERVH-int LTR - chr6:126362317-126362347 chr6 126362317 126362347 (AAC)n Simple_repeat + chr6:126363910-126363966 chr6 126363910 126363966 A-rich Low_complexity + chr6:126486439-126486467 chr6 126486439 126486467 L1P3 LINE - chr6:126672746-126672797 chr6 126672746 126672797 MIRb SINE + chr6:133139132-133139404 chr6 133139132 133139404 AluSq2 SINE - chr6:133139863-133139910 chr6 133139863 133139910 SVA_B Retroposon + chr6:133140000-133140271 chr6 133140000 133140271 AluSx SINE - chr6:133140978-133141070 chr6 133140978 133141070 L2c LINE + chr6:133141349-133141389 chr6 133141349 133141389 (T)n Simple_repeat + chr6:133142376-133142444 chr6 133142376 133142444 Eutr10 LTR - chr6:133142655-133142684 chr6 133142655 133142684 (T)n Simple_repeat + chr6:138178716-138178723 chr6 138178716 138178723 (TTTTGT)n Simple_repeat + chr6:142192209-142192232 chr6 142192209 142192232 (T)n Simple_repeat + chr6:142195991-142196024 chr6 142195991 142196024 (GT)n Simple_repeat + chr6:142218798-142218821 chr6 142218798 142218821 (TG)n Simple_repeat + chr6:142219167-142219194 chr6 142219167 142219194 (AAAC)n Simple_repeat + chr6:14283515-14283536 chr6 14283515 14283536 (AC)n Simple_repeat + chr6:14292217-14292259 chr6 14292217 14292259 (TAATAT)n Simple_repeat + chr6:14292323-14292642 chr6 14292323 14292642 LTR33 LTR + chr6:14292678-14292973 chr6 14292678 14292973 AluSx3 SINE - chr6:14292974-14293095 chr6 14292974 14293095 MIR SINE - chr6:14294088-14294123 chr6 14294088 14294123 (CAAAC)n Simple_repeat + chr6:14294134-14294180 chr6 14294134 14294180 (CACACAGA)n Simple_repeat + chr6:14296308-14296347 chr6 14296308 14296347 (AC)n Simple_repeat + chr6:14296347-14296358 chr6 14296347 14296358 (ACACGC)n Simple_repeat + chr6:144606756-144606777 chr6 144606756 144606777 (TCTT)n Simple_repeat + chr6:14977083-14977251 chr6 14977083 14977251 MIRb SINE - chr6:14979270-14979405 chr6 14979270 14979405 AluJr SINE - chr6:149820970-149821152 chr6 149820970 149821152 Ricksha_0 DNA + chr6:149821095-149821327 chr6 149821095 149821327 ERVL-int LTR + chr6:149822299-149822643 chr6 149822299 149822643 L1MD1 LINE + chr6:149823052-149823220 chr6 149823052 149823220 FAM SINE - chr6:14984832-14984934 chr6 14984832 14984934 MIRb SINE - chr6:14986120-14986197 chr6 14986120 14986197 MIRb SINE - chr6:14988909-14989139 chr6 14988909 14989139 L1MC4 LINE - chr6:14989210-14989274 chr6 14989210 14989274 EUTREP2 Unknown - chr6:14990364-14990399 chr6 14990364 14990399 (TA)n Simple_repeat + chr6:14991510-14991655 chr6 14991510 14991655 FRAM SINE - chr6:149915718-149915738 chr6 149915718 149915738 (A)n Simple_repeat + chr6:149915902-149915931 chr6 149915902 149915931 A-rich Low_complexity + chr6:14992714-14992843 chr6 14992714 14992843 MIRb SINE + chr6:14992873-14992937 chr6 14992873 14992937 MSTA LTR - chr6:14992937-14993027 chr6 14992937 14993027 AluJb SINE + chr6:14993039-14993155 chr6 14993039 14993155 FLAM_A SINE + chr6:14993155-14993199 chr6 14993155 14993199 (AATA)n Simple_repeat + chr6:14994761-14995061 chr6 14994761 14995061 AluJb SINE - chr6:14995061-14995154 chr6 14995061 14995154 Eutr15 DNA - chr6:14995337-14995359 chr6 14995337 14995359 (AC)n Simple_repeat + chr6:14997210-14997461 chr6 14997210 14997461 MLT1J LTR - chr6:14999477-14999577 chr6 14999477 14999577 FLAM_C SINE + chr6:14999906-14999942 chr6 14999906 14999942 (CTCC)n Simple_repeat + chr6:15004040-15004185 chr6 15004040 15004185 MIR3 SINE + chr6:15004494-15004603 chr6 15004494 15004603 Tigger4 DNA - chr6:15004756-15005012 chr6 15004756 15005012 Tigger4b DNA - chr6:15004964-15005024 chr6 15004964 15005024 Tigger4a DNA + chr6:15005763-15005798 chr6 15005763 15005798 U2 snRNA + chr6:15006138-15006452 chr6 15006138 15006452 AluSp SINE - chr6:15012582-15012613 chr6 15012582 15012613 L2b LINE + chr6:15013361-15013452 chr6 15013361 15013452 L2a LINE - chr6:15015627-15015701 chr6 15015627 15015701 MADE1 DNA - chr6:15016343-15016427 chr6 15016343 15016427 MIR3 SINE + chr6:15016632-15016759 chr6 15016632 15016759 FLAM_A SINE + chr6:15017503-15017538 chr6 15017503 15017538 (TCATTCC)n Simple_repeat + chr6:15020028-15020235 chr6 15020028 15020235 AluSx SINE - chr6:15021485-15021529 chr6 15021485 15021529 (CA)n Simple_repeat + chr6:151715018-151715296 chr6 151715018 151715296 AluJr SINE + chr6:151715900-151715923 chr6 151715900 151715923 (GT)n Simple_repeat + chr6:151716341-151716535 chr6 151716341 151716535 MER112 DNA - chr6:151716541-151716926 chr6 151716541 151716926 MLT1F1 LTR - chr6:151718493-151718576 chr6 151718493 151718576 L2d2 LINE + chr6:151718691-151718825 chr6 151718691 151718825 L2c LINE - chr6:151719371-151719503 chr6 151719371 151719503 MER3 DNA - chr6:151719632-151719823 chr6 151719632 151719823 MIR SINE + chr6:151719915-151720229 chr6 151719915 151720229 L1ME1 LINE - chr6:151720991-151721137 chr6 151720991 151721137 X24_LINE LINE - chr6:151722935-151723111 chr6 151722935 151723111 MER5A DNA - chr6:151723509-151723540 chr6 151723509 151723540 MIRb SINE - chr6:151723542-151723722 chr6 151723542 151723722 MIRb SINE - chr6:15246264-15246334 chr6 15246264 15246334 (GCT)n Simple_repeat + chr6:15246272-15246298 chr6 15246272 15246298 (GCC)n Simple_repeat + chr6:15246481-15246500 chr6 15246481 15246500 (TG)n Simple_repeat + chr6:153018621-153018642 chr6 153018621 153018642 (CAA)n Simple_repeat + chr6:153306300-153306390 chr6 153306300 153306390 MIRb SINE - chr6:156983611-156983633 chr6 156983611 156983633 (A)n Simple_repeat + chr6:160908849-160908882 chr6 160908849 160908882 (TCTCTC)n Simple_repeat + chr6:161306633-161306852 chr6 161306633 161306852 LTR8 LTR - chr6:161411648-161411736 chr6 161411648 161411736 L2a LINE + chr6:167395649-167395691 chr6 167395649 167395691 (TTCTTCC)n Simple_repeat + chr6:167406456-167407251 chr6 167406456 167407251 HAL1ME LINE + chr6:167406487-167406747 chr6 167406487 167406747 MER8 DNA + chr6:170125739-170125766 chr6 170125739 170125766 (A)n Simple_repeat + chr6:21668039-21668343 chr6 21668039 21668343 AluSz SINE + chr6:21669954-21670094 chr6 21669954 21670094 MIR SINE + chr6:21670182-21670490 chr6 21670182 21670490 AluSq SINE - chr6:21670789-21670943 chr6 21670789 21670943 MIRb SINE + chr6:21672208-21672513 chr6 21672208 21672513 AluSp SINE - chr6:21672675-21672990 chr6 21672675 21672990 AluSx3 SINE - chr6:21674022-21674320 chr6 21674022 21674320 AluSx1 SINE - chr6:21675111-21675268 chr6 21675111 21675268 MIRc SINE - chr6:21675669-21675977 chr6 21675669 21675977 AluSg SINE - chr6:21675982-21676296 chr6 21675982 21676296 AluSc8 SINE - chr6:21676317-21676526 chr6 21676317 21676526 AluSx SINE - chr6:21676640-21676938 chr6 21676640 21676938 AluSx SINE - chr6:21677031-21677380 chr6 21677031 21677380 MLT1L LTR - chr6:21677101-21677138 chr6 21677101 21677138 (TTTC)n Simple_repeat + chr6:21677138-21677291 chr6 21677138 21677291 (TTCC)n Simple_repeat + chr6:21677291-21677315 chr6 21677291 21677315 (TTTC)n Simple_repeat + chr6:21677428-21677726 chr6 21677428 21677726 AluSg7 SINE - chr6:21677847-21678156 chr6 21677847 21678156 AluY SINE - chr6:21678543-21678839 chr6 21678543 21678839 AluJb SINE + chr6:21678931-21679245 chr6 21678931 21679245 AluSq2 SINE - chr6:21679679-21679985 chr6 21679679 21679985 AluSx1 SINE - chr6:21680088-21680228 chr6 21680088 21680228 AluJr SINE + chr6:21680958-21681268 chr6 21680958 21681268 AluJb SINE - chr6:21681363-21681664 chr6 21681363 21681664 AluSq2 SINE - chr6:21681789-21681917 chr6 21681789 21681917 MIRb SINE - chr6:21682127-21682440 chr6 21682127 21682440 AluSc8 SINE - chr6:21682923-21683244 chr6 21682923 21683244 AluJr SINE - chr6:21683264-21683552 chr6 21683264 21683552 AluY SINE - chr6:21683712-21683994 chr6 21683712 21683994 AluSq2 SINE + chr6:21683999-21684041 chr6 21683999 21684041 A-rich Low_complexity + chr6:21686610-21686664 chr6 21686610 21686664 Alu SINE - chr6:21686666-21686702 chr6 21686666 21686702 (A)n Simple_repeat + chr6:21686702-21686884 chr6 21686702 21686884 AluSx3 SINE + chr6:21686884-21687008 chr6 21686884 21687008 MER103C DNA - chr6:21687153-21687298 chr6 21687153 21687298 MamTip2b DNA - chr6:21687353-21687385 chr6 21687353 21687385 (AAC)n Simple_repeat + chr6:21687392-21687689 chr6 21687392 21687689 AluSc SINE + chr6:21688054-21688470 chr6 21688054 21688470 MLT1C2 LTR + chr6:21689809-21689923 chr6 21689809 21689923 LTR9B LTR - chr6:21690134-21690189 chr6 21690134 21690189 (ATTGAA)n Simple_repeat + chr6:21690435-21690488 chr6 21690435 21690488 L2a LINE + chr6:21690624-21690915 chr6 21690624 21690915 MER33 DNA - chr6:21691153-21691222 chr6 21691153 21691222 MIRb SINE + chr6:21691260-21691568 chr6 21691260 21691568 AluSz SINE - chr6:21692497-21692526 chr6 21692497 21692526 A-rich Low_complexity + chr6:21692533-21692550 chr6 21692533 21692550 (AAC)n Simple_repeat + chr6:21693697-21693986 chr6 21693697 21693986 AluSc SINE - chr6:21695122-21695251 chr6 21695122 21695251 AluSq2 SINE + chr6:21695573-21695871 chr6 21695573 21695871 AluSz SINE + chr6:21696379-21696684 chr6 21696379 21696684 AluSx1 SINE - chr6:21698848-21699139 chr6 21698848 21699139 AluSx SINE - chr6:21699588-21699668 chr6 21699588 21699668 L1MA7 LINE - chr6:21699806-21700112 chr6 21699806 21700112 AluY SINE - chr6:21700492-21700621 chr6 21700492 21700621 (AT)n Simple_repeat + chr6:21700775-21700839 chr6 21700775 21700839 MER94 DNA + chr6:21701029-21701325 chr6 21701029 21701325 AluSp SINE - chr6:21701325-21701613 chr6 21701325 21701613 AluY SINE - chr6:21702113-21702244 chr6 21702113 21702244 L2c LINE + chr6:21704999-21705306 chr6 21704999 21705306 AluY SINE - chr6:21705983-21706005 chr6 21705983 21706005 (AC)n Simple_repeat + chr6:21706930-21707051 chr6 21706930 21707051 MIR1_Amn SINE + chr6:21707096-21707401 chr6 21707096 21707401 AluSq4 SINE - chr6:21707499-21707784 chr6 21707499 21707784 AluJo SINE + chr6:21709558-21709847 chr6 21709558 21709847 AluSx1 SINE - chr6:21711708-21711794 chr6 21711708 21711794 L2a LINE + chr6:21712086-21712118 chr6 21712086 21712118 (TTTAT)n Simple_repeat + chr6:21712118-21712398 chr6 21712118 21712398 AluSg SINE - chr6:21712398-21712436 chr6 21712398 21712436 AluSx SINE + chr6:21712853-21713022 chr6 21712853 21713022 MIRb SINE - chr6:21714152-21714444 chr6 21714152 21714444 AluJr4 SINE + chr6:21716175-21716486 chr6 21716175 21716486 AluSp SINE - chr6:21718673-21718748 chr6 21718673 21718748 (CA)n Simple_repeat + chr6:21719124-21719282 chr6 21719124 21719282 FRAM SINE - chr6:21719897-21720098 chr6 21719897 21720098 L1ME3G LINE - chr6:21720589-21720783 chr6 21720589 21720783 MIR SINE + chr6:21721086-21721329 chr6 21721086 21721329 AluSx SINE - chr6:21722163-21722396 chr6 21722163 21722396 AluSz SINE - chr6:21722703-21722970 chr6 21722703 21722970 MER61B LTR - chr6:21723202-21723227 chr6 21723202 21723227 (A)n Simple_repeat + chr6:21723244-21723551 chr6 21723244 21723551 AluSq2 SINE - chr6:21724135-21724210 chr6 21724135 21724210 MIR3 SINE + chr6:21724843-21724875 chr6 21724843 21724875 (T)n Simple_repeat + chr6:21724901-21724998 chr6 21724901 21724998 LTR90A LTR + chr6:21725044-21725347 chr6 21725044 21725347 AluSq SINE - chr6:21726382-21726408 chr6 21726382 21726408 (CA)n Simple_repeat + chr6:21726511-21726718 chr6 21726511 21726718 AluJb SINE - chr6:21727188-21727324 chr6 21727188 21727324 Charlie4z DNA + chr6:21727843-21728136 chr6 21727843 21728136 AluSx SINE - chr6:21728904-21728980 chr6 21728904 21728980 AluYj4 SINE - chr6:21728993-21729036 chr6 21728993 21729036 (A)n Simple_repeat + chr6:21729417-21729567 chr6 21729417 21729567 FRAM SINE + chr6:21730492-21730797 chr6 21730492 21730797 AluSp SINE - chr6:21731181-21731489 chr6 21731181 21731489 AluSz SINE - chr6:21731621-21731702 chr6 21731621 21731702 MIR3 SINE - chr6:21732083-21732160 chr6 21732083 21732160 MARE4 DNA + chr6:21732316-21732472 chr6 21732316 21732472 L1MB3 LINE - chr6:21732925-21733013 chr6 21732925 21733013 MIRb SINE - chr6:21733127-21733175 chr6 21733127 21733175 (TAGC)n Simple_repeat + chr6:21733175-21733186 chr6 21733175 21733186 (TATC)n Simple_repeat + chr6:21734191-21734389 chr6 21734191 21734389 MIRb SINE - chr6:21735040-21735069 chr6 21735040 21735069 (ATTTT)n Simple_repeat + chr6:21735069-21735352 chr6 21735069 21735352 AluSp SINE - chr6:21736255-21736290 chr6 21736255 21736290 (TG)n Simple_repeat + chr6:21736947-21737236 chr6 21736947 21737236 AluSg7 SINE - chr6:21737579-21737710 chr6 21737579 21737710 L2c LINE + chr6:21738260-21738519 chr6 21738260 21738519 AluJb SINE + chr6:21741584-21741612 chr6 21741584 21741612 G-rich Low_complexity + chr6:21741839-21741959 chr6 21741839 21741959 UCON73 DNA + chr6:21743213-21743268 chr6 21743213 21743268 L3b LINE + chr6:21743453-21743781 chr6 21743453 21743781 AluSp SINE - chr6:21743792-21744092 chr6 21743792 21744092 AluSc8 SINE - chr6:21744228-21744510 chr6 21744228 21744510 AluSx4 SINE - chr6:21744638-21744675 chr6 21744638 21744675 L2c LINE - chr6:21744867-21745178 chr6 21744867 21745178 AluJb SINE - chr6:21745245-21745437 chr6 21745245 21745437 MIRc SINE - chr6:21745515-21745687 chr6 21745515 21745687 AluSx3 SINE + chr6:21745983-21746135 chr6 21745983 21746135 L2b LINE + chr6:21746583-21746893 chr6 21746583 21746893 AluY SINE - chr6:21747421-21747527 chr6 21747421 21747527 MIRc SINE + chr6:21750991-21751013 chr6 21750991 21751013 (T)n Simple_repeat + chr6:21751205-21751340 chr6 21751205 21751340 L1ME4a LINE - chr6:21752674-21752803 chr6 21752674 21752803 FLAM_A SINE - chr6:21752953-21753247 chr6 21752953 21753247 AluSx1 SINE - chr6:21753247-21753297 chr6 21753247 21753297 L1MD LINE - chr6:21753400-21753454 chr6 21753400 21753454 AluSx SINE - chr6:21754325-21754386 chr6 21754325 21754386 MIR3 SINE - chr6:21754731-21755041 chr6 21754731 21755041 AluSg SINE - chr6:21755373-21755589 chr6 21755373 21755589 MIRb SINE - chr6:21756358-21756616 chr6 21756358 21756616 Tigger17a DNA - chr6:21756611-21757066 chr6 21756611 21757066 Tigger17a DNA - chr6:21757833-21758093 chr6 21757833 21758093 AluSx SINE - chr6:21758106-21758424 chr6 21758106 21758424 AluYj4 SINE - chr6:21758431-21758739 chr6 21758431 21758739 AluY SINE - chr6:21759397-21759425 chr6 21759397 21759425 (T)n Simple_repeat + chr6:21759432-21759690 chr6 21759432 21759690 AluSp SINE - chr6:21759884-21760178 chr6 21759884 21760178 AluJo SINE - chr6:21762556-21762679 chr6 21762556 21762679 LTR12C LTR + chr6:21762733-21762993 chr6 21762733 21762993 AluYk3 SINE + chr6:21763038-21763075 chr6 21763038 21763075 (TTCA)n Simple_repeat + chr6:21763638-21763936 chr6 21763638 21763936 AluSx SINE - chr6:21764326-21764620 chr6 21764326 21764620 AluSx1 SINE - chr6:21764884-21765110 chr6 21764884 21765110 AluSx3 SINE + chr6:21765557-21765580 chr6 21765557 21765580 (TCAT)n Simple_repeat + chr6:21766132-21766341 chr6 21766132 21766341 AluJr4 SINE - chr6:21766505-21766815 chr6 21766505 21766815 AluSc8 SINE - chr6:21767309-21767611 chr6 21767309 21767611 AluSx SINE + chr6:21767611-21767643 chr6 21767611 21767643 (AT)n Simple_repeat + chr6:21768812-21768857 chr6 21768812 21768857 L2d LINE - chr6:21771036-21771070 chr6 21771036 21771070 (TA)n Simple_repeat + chr6:21771070-21771098 chr6 21771070 21771098 (CA)n Simple_repeat + chr6:21771327-21771457 chr6 21771327 21771457 Charlie17a DNA + chr6:21772506-21772545 chr6 21772506 21772545 (TTA)n Simple_repeat + chr6:21774264-21774572 chr6 21774264 21774572 AluY SINE - chr6:21774864-21774948 chr6 21774864 21774948 SVA_A Retroposon - chr6:21774893-21775000 chr6 21774893 21775000 FLAM_A SINE + chr6:21775543-21775806 chr6 21775543 21775806 AluSz6 SINE + chr6:21776528-21776801 chr6 21776528 21776801 AluSg4 SINE - chr6:21776802-21776948 chr6 21776802 21776948 AluSz6 SINE - chr6:21777071-21777350 chr6 21777071 21777350 L2a LINE - chr6:21777639-21777952 chr6 21777639 21777952 AluSq2 SINE - chr6:21778786-21778968 chr6 21778786 21778968 (CATC)n Simple_repeat + chr6:21778968-21779102 chr6 21778968 21779102 MIR3 SINE + chr6:21779406-21779539 chr6 21779406 21779539 MIR SINE - chr6:21779929-21779963 chr6 21779929 21779963 (CCTCC)n Simple_repeat + chr6:21779963-21780253 chr6 21779963 21780253 AluSz6 SINE - chr6:21782168-21782269 chr6 21782168 21782269 AluJb SINE + chr6:21782438-21782730 chr6 21782438 21782730 AluSg SINE - chr6:21782876-21783074 chr6 21782876 21783074 MIRb SINE + chr6:21784101-21784202 chr6 21784101 21784202 L1ME3C LINE + chr6:21784297-21784618 chr6 21784297 21784618 AluSx SINE - chr6:21784683-21785044 chr6 21784683 21785044 AluJo SINE + chr6:21784821-21784850 chr6 21784821 21784850 (AT)n Simple_repeat + chr6:21785247-21785420 chr6 21785247 21785420 MER5A DNA + chr6:21785766-21785956 chr6 21785766 21785956 MER5B DNA - chr6:21786706-21787005 chr6 21786706 21787005 AluSg7 SINE + chr6:21787641-21787927 chr6 21787641 21787927 AluSx4 SINE - chr6:21787976-21787999 chr6 21787976 21787999 (AAAC)n Simple_repeat + chr6:21788251-21788270 chr6 21788251 21788270 (TC)n Simple_repeat + chr6:21788624-21788926 chr6 21788624 21788926 AluSx3 SINE - chr6:21789351-21789650 chr6 21789351 21789650 AluSq10 SINE + chr6:21789794-21789839 chr6 21789794 21789839 (T)n Simple_repeat + chr6:21790038-21790064 chr6 21790038 21790064 (GT)n Simple_repeat + chr6:21790328-21790559 chr6 21790328 21790559 L1PA7 LINE + chr6:21790978-21791267 chr6 21790978 21791267 AluSp SINE - chr6:21791545-21791849 chr6 21791545 21791849 AluSx1 SINE + chr6:21792192-21792407 chr6 21792192 21792407 MIR SINE - chr6:21792416-21792720 chr6 21792416 21792720 AluJr SINE - chr6:21792825-21792876 chr6 21792825 21792876 (TTCC)n Simple_repeat + chr6:21792876-21793190 chr6 21792876 21793190 AluSz SINE - chr6:21793889-21794212 chr6 21793889 21794212 AluJr SINE - chr6:21794308-21794619 chr6 21794308 21794619 L1ME4b LINE - chr6:21794630-21794782 chr6 21794630 21794782 (AT)n Simple_repeat + chr6:21794782-21794969 chr6 21794782 21794969 AluSg4 SINE - chr6:21794980-21795281 chr6 21794980 21795281 AluSq2 SINE + chr6:21795391-21795700 chr6 21795391 21795700 AluSx3 SINE + chr6:21798751-21799046 chr6 21798751 21799046 AluJr SINE - chr6:21799462-21799572 chr6 21799462 21799572 MIRc SINE - chr6:21799579-21799912 chr6 21799579 21799912 AluSx1 SINE + chr6:21799950-21800105 chr6 21799950 21800105 MIRb SINE - chr6:21800145-21800431 chr6 21800145 21800431 AluJb SINE + chr6:21800581-21800803 chr6 21800581 21800803 MIRb SINE + chr6:21803467-21803767 chr6 21803467 21803767 AluY SINE - chr6:21803808-21803844 chr6 21803808 21803844 (TG)n Simple_repeat + chr6:21803845-21804024 chr6 21803845 21804024 AluJb SINE - chr6:21804027-21804323 chr6 21804027 21804323 AluSx1 SINE - chr6:21804669-21804985 chr6 21804669 21804985 AluSq2 SINE - chr6:21805743-21805828 chr6 21805743 21805828 AluYm1 SINE + chr6:21806170-21806196 chr6 21806170 21806196 (TA)n Simple_repeat + chr6:21806499-21806797 chr6 21806499 21806797 AluSq SINE - chr6:21807364-21807650 chr6 21807364 21807650 AluSp SINE + chr6:21809724-21809764 chr6 21809724 21809764 (TTCTTCTC)n Simple_repeat + chr6:21810230-21810273 chr6 21810230 21810273 A-rich Low_complexity + chr6:21810389-21810686 chr6 21810389 21810686 AluSx1 SINE - chr6:21811191-21811501 chr6 21811191 21811501 AluSp SINE + chr6:21812375-21812497 chr6 21812375 21812497 AluJb SINE - chr6:21812497-21812793 chr6 21812497 21812793 AluSg4 SINE - chr6:21812794-21812817 chr6 21812794 21812817 (T)n Simple_repeat + chr6:21813461-21813492 chr6 21813461 21813492 (TG)n Simple_repeat + chr6:21813672-21813732 chr6 21813672 21813732 MIR SINE + chr6:21813884-21813965 chr6 21813884 21813965 MIR3 SINE + chr6:21814005-21814265 chr6 21814005 21814265 AluSx3 SINE - chr6:21814324-21814373 chr6 21814324 21814373 X9_LINE LINE - chr6:21814516-21814589 chr6 21814516 21814589 Alu SINE + chr6:21814892-21814932 chr6 21814892 21814932 (TG)n Simple_repeat + chr6:21814932-21815199 chr6 21814932 21815199 AluSq2 SINE - chr6:21815490-21815789 chr6 21815490 21815789 AluSx1 SINE - chr6:21816777-21816817 chr6 21816777 21816817 GA-rich Low_complexity + chr6:21816941-21817247 chr6 21816941 21817247 AluSq2 SINE - chr6:21817249-21817548 chr6 21817249 21817548 AluSg SINE - chr6:21818394-21818420 chr6 21818394 21818420 (TTTAA)n Simple_repeat + chr6:21818701-21819008 chr6 21818701 21819008 AluSq2 SINE - chr6:21819871-21820183 chr6 21819871 21820183 AluSx1 SINE - chr6:21820980-21821287 chr6 21820980 21821287 AluSp SINE - chr6:21821635-21821869 chr6 21821635 21821869 MIRc SINE + chr6:21822017-21822336 chr6 21822017 21822336 AluSg SINE - chr6:21823028-21823105 chr6 21823028 21823105 MIRc SINE + chr6:21823258-21823563 chr6 21823258 21823563 AluSc8 SINE + chr6:21824715-21824913 chr6 21824715 21824913 L2a LINE + chr6:21825588-21825886 chr6 21825588 21825886 AluSz SINE - chr6:21826520-21826702 chr6 21826520 21826702 MER5A DNA + chr6:21826773-21827068 chr6 21826773 21827068 AluSx SINE - chr6:21828344-21828428 chr6 21828344 21828428 Charlie13a DNA + chr6:21828428-21828550 chr6 21828428 21828550 MIRb SINE + chr6:21829220-21829276 chr6 21829220 21829276 (TTTAGAT)n Simple_repeat + chr6:21829912-21830077 chr6 21829912 21830077 MIRc SINE + chr6:21830328-21830637 chr6 21830328 21830637 AluSx1 SINE + chr6:21830686-21830774 chr6 21830686 21830774 (CTCTC)n Simple_repeat + chr6:21830777-21831069 chr6 21830777 21831069 AluJr SINE - chr6:21832000-21832035 chr6 21832000 21832035 G-rich Low_complexity + chr6:21832619-21832651 chr6 21832619 21832651 (TAGGA)n Simple_repeat + chr6:21832931-21833212 chr6 21832931 21833212 AluSx SINE + chr6:21834651-21834963 chr6 21834651 21834963 AluSx SINE + chr6:21835656-21835953 chr6 21835656 21835953 AluSx1 SINE - chr6:21836691-21836842 chr6 21836691 21836842 MER131 DNA? + chr6:21837313-21837569 chr6 21837313 21837569 MamSINE1 SINE - chr6:21837742-21838055 chr6 21837742 21838055 AluSz SINE - chr6:21838218-21838297 chr6 21838218 21838297 (AT)n Simple_repeat + chr6:21838376-21838517 chr6 21838376 21838517 MER91A DNA - chr6:21838634-21838951 chr6 21838634 21838951 AluJr SINE - chr6:21839312-21839624 chr6 21839312 21839624 AluSq2 SINE + chr6:21839971-21840060 chr6 21839971 21840060 Alu SINE - chr6:21840080-21840455 chr6 21840080 21840455 L1MB1 LINE - chr6:21841251-21841538 chr6 21841251 21841538 AluSz SINE + chr6:21841765-21842077 chr6 21841765 21842077 AluSz SINE - chr6:21842378-21842665 chr6 21842378 21842665 AluSq2 SINE - chr6:21843450-21843605 chr6 21843450 21843605 Tigger19a DNA + chr6:21844121-21844143 chr6 21844121 21844143 (TG)n Simple_repeat + chr6:21845521-21845831 chr6 21845521 21845831 Eulor6D DNA? - chr6:21845628-21845665 chr6 21845628 21845665 (TTTC)n Simple_repeat + chr6:21846168-21846189 chr6 21846168 21846189 (GT)n Simple_repeat + chr6:21848559-21848613 chr6 21848559 21848613 MER5B DNA + chr6:21848621-21848933 chr6 21848621 21848933 AluJo SINE + chr6:21848936-21849165 chr6 21848936 21849165 AluJr SINE + chr6:21849180-21849241 chr6 21849180 21849241 A-rich Low_complexity + chr6:21849697-21849752 chr6 21849697 21849752 GA-rich Low_complexity + chr6:21850265-21850564 chr6 21850265 21850564 AluSq2 SINE - chr6:21853529-21853580 chr6 21853529 21853580 (GTG)n Simple_repeat + chr6:21853611-21853819 chr6 21853611 21853819 MamRep434 DNA + chr6:21854556-21854693 chr6 21854556 21854693 AluSx SINE + chr6:21854716-21854750 chr6 21854716 21854750 (TA)n Simple_repeat + chr6:21854750-21854776 chr6 21854750 21854776 (CA)n Simple_repeat + chr6:21854782-21855076 chr6 21854782 21855076 AluSg SINE - chr6:21855529-21855819 chr6 21855529 21855819 AluJr SINE + chr6:21855869-21855925 chr6 21855869 21855925 MER5A1 DNA - chr6:21855959-21856148 chr6 21855959 21856148 HAL1 LINE - chr6:21856316-21856360 chr6 21856316 21856360 MIR SINE - chr6:21857541-21857681 chr6 21857541 21857681 MIRc SINE + chr6:21857929-21858023 chr6 21857929 21858023 AluSz SINE + chr6:21858026-21858333 chr6 21858026 21858333 AluSq2 SINE + chr6:21859058-21859235 chr6 21859058 21859235 AluJr SINE + chr6:21860176-21860202 chr6 21860176 21860202 (TG)n Simple_repeat + chr6:21860202-21860453 chr6 21860202 21860453 AluSz SINE - chr6:21860883-21861177 chr6 21860883 21861177 AluSx1 SINE + chr6:21861833-21862142 chr6 21861833 21862142 AluSp SINE - chr6:21862429-21862466 chr6 21862429 21862466 (TTGTT)n Simple_repeat + chr6:21862466-21862751 chr6 21862466 21862751 AluSx SINE - chr6:21863339-21863534 chr6 21863339 21863534 MIRc SINE + chr6:21863534-21863841 chr6 21863534 21863841 AluJb SINE + chr6:21863953-21864279 chr6 21863953 21864279 AluSq2 SINE + chr6:21864279-21864407 chr6 21864279 21864407 MIRc SINE + chr6:21865180-21865500 chr6 21865180 21865500 AluSx4 SINE - chr6:21865832-21866141 chr6 21865832 21866141 AluSx1 SINE + chr6:21867346-21867641 chr6 21867346 21867641 AluSq2 SINE + chr6:21867651-21867946 chr6 21867651 21867946 AluSz SINE + chr6:21869133-21869436 chr6 21869133 21869436 AluSc8 SINE - chr6:21870399-21870544 chr6 21870399 21870544 MIR1_Amn SINE - chr6:21870931-21871229 chr6 21870931 21871229 AluSx SINE - chr6:21871783-21872066 chr6 21871783 21872066 AluSz SINE - chr6:21872582-21872764 chr6 21872582 21872764 Tigger16b DNA + chr6:21873492-21873620 chr6 21873492 21873620 MIR3 SINE + chr6:21879018-21879305 chr6 21879018 21879305 AluSc SINE + chr6:21879736-21880034 chr6 21879736 21880034 AluSx1 SINE + chr6:21883289-21883319 chr6 21883289 21883319 (TTTCTTT)n Simple_repeat + chr6:21883319-21883603 chr6 21883319 21883603 AluSz SINE - chr6:21887252-21887515 chr6 21887252 21887515 L2 LINE - chr6:21888492-21888796 chr6 21888492 21888796 AluSp SINE - chr6:21889570-21889796 chr6 21889570 21889796 AluY SINE - chr6:21890123-21890406 chr6 21890123 21890406 AluSx SINE + chr6:21890412-21890694 chr6 21890412 21890694 AluSp SINE + chr6:21891496-21891603 chr6 21891496 21891603 LTR16 LTR - chr6:21892113-21892415 chr6 21892113 21892415 AluSz6 SINE - chr6:21893377-21893435 chr6 21893377 21893435 Tigger14a DNA + chr6:21893473-21893568 chr6 21893473 21893568 L3 LINE + chr6:21893879-21893918 chr6 21893879 21893918 (TG)n Simple_repeat + chr6:21894798-21895020 chr6 21894798 21895020 MIRc SINE + chr6:21895343-21895627 chr6 21895343 21895627 AluSx1 SINE + chr6:21895627-21895665 chr6 21895627 21895665 (AAAT)n Simple_repeat + chr6:21896136-21896224 chr6 21896136 21896224 L2a LINE + chr6:21896562-21896838 chr6 21896562 21896838 AluSg SINE + chr6:21896919-21897193 chr6 21896919 21897193 AluSq2 SINE + chr6:21897193-21897227 chr6 21897193 21897227 (AAAAC)n Simple_repeat + chr6:21897303-21897433 chr6 21897303 21897433 AluSx3 SINE + chr6:21899549-21899821 chr6 21899549 21899821 AluSp SINE + chr6:21900063-21900305 chr6 21900063 21900305 L2 LINE - chr6:21900391-21900505 chr6 21900391 21900505 MIR SINE + chr6:21902430-21902729 chr6 21902430 21902729 AluJr SINE - chr6:21903931-21904216 chr6 21903931 21904216 AluSp SINE - chr6:21906256-21906302 chr6 21906256 21906302 (AT)n Simple_repeat + chr6:21906284-21906325 chr6 21906284 21906325 (ACATTATA)n Simple_repeat + chr6:21906330-21906358 chr6 21906330 21906358 (AC)n Simple_repeat + chr6:21908530-21908573 chr6 21908530 21908573 UCON2 DNA? + chr6:21911954-21912105 chr6 21911954 21912105 MIR SINE + chr6:21916454-21916563 chr6 21916454 21916563 MIR SINE + chr6:21917372-21917421 chr6 21917372 21917421 L2c LINE + chr6:21918342-21918401 chr6 21918342 21918401 AmnSINE1 SINE + chr6:21918826-21918918 chr6 21918826 21918918 MIRc SINE + chr6:21920640-21920793 chr6 21920640 21920793 L2a LINE - chr6:21923230-21923367 chr6 21923230 21923367 MIR3 SINE + chr6:21930068-21930123 chr6 21930068 21930123 (ATATAC)n Simple_repeat + chr6:21938214-21938289 chr6 21938214 21938289 L2d2 LINE + chr6:21939423-21939444 chr6 21939423 21939444 (A)n Simple_repeat + chr6:21940543-21940676 chr6 21940543 21940676 L1ME3A LINE - chr6:21941491-21941584 chr6 21941491 21941584 L1MA4 LINE - chr6:21942753-21942980 chr6 21942753 21942980 X12_DNA DNA - chr6:21943602-21943777 chr6 21943602 21943777 MIRc SINE - chr6:21943776-21944006 chr6 21943776 21944006 MIR SINE - chr6:21945808-21945840 chr6 21945808 21945840 (CACATA)n Simple_repeat + chr6:21947289-21947362 chr6 21947289 21947362 MER20 DNA + chr6:21948090-21948121 chr6 21948090 21948121 (A)n Simple_repeat + chr6:21949272-21949292 chr6 21949272 21949292 (CA)n Simple_repeat + chr6:21951499-21951537 chr6 21951499 21951537 (AC)n Simple_repeat + chr6:21952007-21952082 chr6 21952007 21952082 L2c LINE - chr6:21954061-21954098 chr6 21954061 21954098 (AC)n Simple_repeat + chr6:21954221-21954246 chr6 21954221 21954246 (GTGCA)n Simple_repeat + chr6:21954707-21954731 chr6 21954707 21954731 (AGGC)n Simple_repeat + chr6:21956836-21956877 chr6 21956836 21956877 A-rich Low_complexity + chr6:21959522-21959559 chr6 21959522 21959559 (ATGT)n Simple_repeat + chr6:21960140-21960155 chr6 21960140 21960155 (ACA)n Simple_repeat + chr6:21961128-21961158 chr6 21961128 21961158 (AT)n Simple_repeat + chr6:21964997-21965069 chr6 21964997 21965069 MIRc SINE - chr6:21966889-21966994 chr6 21966889 21966994 L2c LINE + chr6:21969079-21969203 chr6 21969079 21969203 L2a LINE - chr6:21972133-21972154 chr6 21972133 21972154 (TG)n Simple_repeat + chr6:21973389-21973491 chr6 21973389 21973491 MIRc SINE - chr6:21973565-21973673 chr6 21973565 21973673 MIRc SINE - chr6:21974298-21974420 chr6 21974298 21974420 MIRc SINE + chr6:21974708-21974741 chr6 21974708 21974741 (CCTT)n Simple_repeat + chr6:21975017-21975073 chr6 21975017 21975073 (CA)n Simple_repeat + chr6:21979447-21979754 chr6 21979447 21979754 AluSq2 SINE + chr6:21980314-21980351 chr6 21980314 21980351 (AGCCTGG)n Simple_repeat + chr6:21980714-21980759 chr6 21980714 21980759 (CCT)n Simple_repeat + chr6:21982191-21982251 chr6 21982191 21982251 (TTTCTCC)n Simple_repeat + chr6:21985263-21985448 chr6 21985263 21985448 MIRc SINE + chr6:21986136-21986153 chr6 21986136 21986153 (T)n Simple_repeat + chr6:21986225-21986369 chr6 21986225 21986369 L1MC4a LINE - chr6:21986467-21986644 chr6 21986467 21986644 MIRb SINE + chr6:21988066-21988222 chr6 21988066 21988222 MER112 DNA + chr6:21990292-21990515 chr6 21990292 21990515 Tigger4a DNA + chr6:21991389-21991438 chr6 21991389 21991438 (GT)n Simple_repeat + chr6:21992020-21992199 chr6 21992020 21992199 MIRb SINE + chr6:21992280-21992538 chr6 21992280 21992538 L2a LINE + chr6:21993865-21994080 chr6 21993865 21994080 MIRb SINE - chr6:21994201-21994228 chr6 21994201 21994228 (AC)n Simple_repeat + chr6:21994652-21994687 chr6 21994652 21994687 (TG)n Simple_repeat + chr6:21994738-21994766 chr6 21994738 21994766 L3 LINE - chr6:21995000-21995111 chr6 21995000 21995111 MIR3 SINE + chr6:21995398-21995488 chr6 21995398 21995488 AluSq2 SINE + chr6:21995679-21995821 chr6 21995679 21995821 MIRb SINE - chr6:21996533-21996742 chr6 21996533 21996742 MER3 DNA - chr6:21998849-21998892 chr6 21998849 21998892 (TTTCTAT)n Simple_repeat + chr6:22001163-22001391 chr6 22001163 22001391 MIRc SINE + chr6:22001578-22001725 chr6 22001578 22001725 CR1-3_Croc LINE - chr6:22002313-22002339 chr6 22002313 22002339 (AATAT)n Simple_repeat + chr6:22004465-22004604 chr6 22004465 22004604 L1PA8A LINE - chr6:22006469-22006785 chr6 22006469 22006785 L1M5 LINE + chr6:22006800-22006953 chr6 22006800 22006953 L1ME3E LINE + chr6:22007578-22007645 chr6 22007578 22007645 MIR SINE + chr6:22008093-22008113 chr6 22008093 22008113 (GT)n Simple_repeat + chr6:22008357-22008484 chr6 22008357 22008484 MamTip2 DNA + chr6:22010861-22010942 chr6 22010861 22010942 (TA)n Simple_repeat + chr6:22013399-22013679 chr6 22013399 22013679 AluSq2 SINE + chr6:22014740-22014835 chr6 22014740 22014835 MER103C DNA + chr6:22015864-22016157 chr6 22015864 22016157 AluSc5 SINE + chr6:22016859-22016882 chr6 22016859 22016882 (GT)n Simple_repeat + chr6:22016881-22016903 chr6 22016881 22016903 (GA)n Simple_repeat + chr6:22017716-22017955 chr6 22017716 22017955 MIR SINE + chr6:22019446-22019529 chr6 22019446 22019529 L2c LINE + chr6:22020593-22020652 chr6 22020593 22020652 L3 LINE - chr6:22024407-22024571 chr6 22024407 22024571 MIRc SINE - chr6:22024760-22024782 chr6 22024760 22024782 (TATG)n Simple_repeat + chr6:22024999-22025216 chr6 22024999 22025216 AluJr SINE + chr6:22026282-22026342 chr6 22026282 22026342 (CTTCCT)n Simple_repeat + chr6:22028210-22028418 chr6 22028210 22028418 AluJb SINE + chr6:22028729-22028877 chr6 22028729 22028877 L2d LINE + chr6:22029999-22030066 chr6 22029999 22030066 (AGAC)n Simple_repeat + chr6:22030052-22030086 chr6 22030052 22030086 (GAGACG)n Simple_repeat + chr6:22030086-22030099 chr6 22030086 22030099 GA-rich Low_complexity + chr6:22030444-22030667 chr6 22030444 22030667 L1ME4a LINE - chr6:22031501-22031756 chr6 22031501 22031756 Tigger7 DNA + chr6:22031753-22031858 chr6 22031753 22031858 Tigger7 DNA + chr6:22031929-22032146 chr6 22031929 22032146 L2d LINE + chr6:22034100-22034300 chr6 22034100 22034300 L2d LINE - chr6:22034905-22035088 chr6 22034905 22035088 MIRc SINE - chr6:22036898-22036938 chr6 22036898 22036938 (A)n Simple_repeat + chr6:22038062-22038174 chr6 22038062 22038174 MIRb SINE + chr6:22038664-22038787 chr6 22038664 22038787 (CTC)n Simple_repeat + chr6:22042397-22042455 chr6 22042397 22042455 (CT)n Simple_repeat + chr6:22042427-22042551 chr6 22042427 22042551 (TCCC)n Simple_repeat + chr6:22044419-22044458 chr6 22044419 22044458 (AATAA)n Simple_repeat + chr6:22045484-22045530 chr6 22045484 22045530 (TG)n Simple_repeat + chr6:22046561-22046639 chr6 22046561 22046639 X12_DNA DNA - chr6:22046736-22046915 chr6 22046736 22046915 MIRc SINE + chr6:22047864-22047883 chr6 22047864 22047883 (T)n Simple_repeat + chr6:22050470-22050616 chr6 22050470 22050616 MIRc SINE + chr6:22052689-22052929 chr6 22052689 22052929 MIR SINE - chr6:22054082-22054119 chr6 22054082 22054119 (GTG)n Simple_repeat + chr6:22054546-22054680 chr6 22054546 22054680 L1PA16 LINE - chr6:22055468-22055507 chr6 22055468 22055507 (AC)n Simple_repeat + chr6:22057760-22057779 chr6 22057760 22057779 (T)n Simple_repeat + chr6:22058212-22058239 chr6 22058212 22058239 (CAAAA)n Simple_repeat + chr6:22058313-22058513 chr6 22058313 22058513 MER20 DNA - chr6:22058666-22058727 chr6 22058666 22058727 L3 LINE - chr6:22060416-22060611 chr6 22060416 22060611 MIRb SINE + chr6:22061793-22061821 chr6 22061793 22061821 (TTTG)n Simple_repeat + chr6:22064270-22064494 chr6 22064270 22064494 AluSx SINE + chr6:22065620-22065650 chr6 22065620 22065650 (TTTCT)n Simple_repeat + chr6:22065692-22065769 chr6 22065692 22065769 L2a LINE - chr6:22066953-22066999 chr6 22066953 22066999 (TGTC)n Simple_repeat + chr6:22069021-22069114 chr6 22069021 22069114 MIR SINE + chr6:22070859-22070888 chr6 22070859 22070888 (TG)n Simple_repeat + chr6:22071601-22071651 chr6 22071601 22071651 (AC)n Simple_repeat + chr6:22075468-22075583 chr6 22075468 22075583 L2d2 LINE - chr6:22075604-22075625 chr6 22075604 22075625 (TGT)n Simple_repeat + chr6:22075960-22076010 chr6 22075960 22076010 (TTC)n Simple_repeat + chr6:22076187-22076215 chr6 22076187 22076215 (TTAA)n Simple_repeat + chr6:22076756-22076853 chr6 22076756 22076853 AluYk2 SINE + chr6:22077510-22077542 chr6 22077510 22077542 (TA)n Simple_repeat + chr6:22078034-22078069 chr6 22078034 22078069 (TAA)n Simple_repeat + chr6:22078673-22078710 chr6 22078673 22078710 (TGGA)n Simple_repeat + chr6:22079372-22079597 chr6 22079372 22079597 MER58A DNA - chr6:22082517-22082727 chr6 22082517 22082727 MIR SINE - chr6:22083621-22083712 chr6 22083621 22083712 UCON14 DNA? - chr6:22084720-22084910 chr6 22084720 22084910 MIRb SINE + chr6:22085773-22086020 chr6 22085773 22086020 7SK RNA + chr6:22088733-22088845 chr6 22088733 22088845 MIRc SINE + chr6:22088885-22088960 chr6 22088885 22088960 MIR3 SINE - chr6:22091613-22091676 chr6 22091613 22091676 L1PA16 LINE + chr6:22093394-22093525 chr6 22093394 22093525 FLAM_C SINE + chr6:22099259-22099283 chr6 22099259 22099283 (AC)n Simple_repeat + chr6:22101915-22102147 chr6 22101915 22102147 L2a LINE - chr6:22102157-22102176 chr6 22102157 22102176 (TG)n Simple_repeat + chr6:22108165-22108256 chr6 22108165 22108256 (TA)n Simple_repeat + chr6:22108289-22108331 chr6 22108289 22108331 (AC)n Simple_repeat + chr6:22109051-22109218 chr6 22109051 22109218 L2c LINE + chr6:22109310-22109343 chr6 22109310 22109343 (ATTTAT)n Simple_repeat + chr6:22109428-22109496 chr6 22109428 22109496 MIRb SINE + chr6:22110874-22110985 chr6 22110874 22110985 MIRc SINE - chr6:22111009-22111031 chr6 22111009 22111031 (AG)n Simple_repeat + chr6:22111573-22111595 chr6 22111573 22111595 (AATA)n Simple_repeat + chr6:22118908-22118987 chr6 22118908 22118987 L2b LINE - chr6:22123607-22123654 chr6 22123607 22123654 MIR SINE - chr6:22126449-22126519 chr6 22126449 22126519 MIRb SINE - chr6:22129164-22129234 chr6 22129164 22129234 MIR SINE - chr6:22137775-22137808 chr6 22137775 22137808 (TGTG)n Simple_repeat + chr6:22140448-22140482 chr6 22140448 22140482 A-rich Low_complexity + chr6:22141469-22141524 chr6 22141469 22141524 Plat_L3 LINE + chr6:22149247-22149284 chr6 22149247 22149284 (AATTTAA)n Simple_repeat + chr6:22153116-22153141 chr6 22153116 22153141 (AATG)n Simple_repeat + chr6:22154629-22154647 chr6 22154629 22154647 (TTG)n Simple_repeat + chr6:22182154-22182169 chr6 22182154 22182169 (TTTTA)n Simple_repeat + chr6:22193443-22193477 chr6 22193443 22193477 (ACAATG)n Simple_repeat + chr6:24428095-24428260 chr6 24428095 24428260 L1PA14 LINE + chr6:24428259-24428302 chr6 24428259 24428302 L1PA15 LINE + chr6:24493742-24493769 chr6 24493742 24493769 A-rich Low_complexity + chr6:26173011-26173039 chr6 26173011 26173039 (TGTA)n Simple_repeat + chr6:26175983-26176010 chr6 26175983 26176010 (T)n Simple_repeat + chr6:26176818-26176846 chr6 26176818 26176846 (TTA)n Simple_repeat + chr6:26184939-26184973 chr6 26184939 26184973 (CA)n Simple_repeat + chr6:26185387-26185452 chr6 26185387 26185452 MER5A DNA - chr6:26185895-26186214 chr6 26185895 26186214 AluSx SINE + chr6:26188515-26188790 chr6 26188515 26188790 AluSz6 SINE + chr6:26191051-26191360 chr6 26191051 26191360 AluYk2 SINE + chr6:26191449-26191724 chr6 26191449 26191724 AluSz6 SINE + chr6:26191851-26192151 chr6 26191851 26192151 AluSx SINE + chr6:26192160-26192471 chr6 26192160 26192471 AluSz6 SINE + chr6:26192921-26193228 chr6 26192921 26193228 AluSx4 SINE + chr6:26194813-26194837 chr6 26194813 26194837 (TG)n Simple_repeat + chr6:26196020-26196491 chr6 26196020 26196491 AluJo SINE + chr6:26206471-26206505 chr6 26206471 26206505 (TTTTG)n Simple_repeat + chr6:26208326-26208353 chr6 26208326 26208353 (AC)n Simple_repeat + chr6:26249672-26249803 chr6 26249672 26249803 MER34 LTR + chr6:26254086-26254385 chr6 26254086 26254385 AluY SINE + chr6:26254398-26254695 chr6 26254398 26254695 AluY SINE + chr6:26254713-26254742 chr6 26254713 26254742 (TA)n Simple_repeat + chr6:26254810-26255608 chr6 26254810 26255608 LTR102_Mam LTR + chr6:26255691-26255985 chr6 26255691 26255985 AluSx SINE + chr6:26256702-26256740 chr6 26256702 26256740 (CTTG)n Simple_repeat + chr6:26260741-26261028 chr6 26260741 26261028 AluSg4 SINE + chr6:26261709-26262222 chr6 26261709 26262222 LTR48B LTR + chr6:26262245-26262571 chr6 26262245 26262571 MLT1J2 LTR + chr6:26262878-26262894 chr6 26262878 26262894 A-rich Low_complexity + chr6:26262894-26263224 chr6 26262894 26263224 AluJr SINE + chr6:26263224-26263257 chr6 26263224 26263257 A-rich Low_complexity + chr6:26263995-26264305 chr6 26263995 26264305 AluSx1 SINE + chr6:26264305-26264599 chr6 26264305 26264599 AluSp SINE + chr6:26265729-26266024 chr6 26265729 26266024 AluSc8 SINE + chr6:26266029-26266307 chr6 26266029 26266307 AluYk2 SINE + chr6:26266712-26266846 chr6 26266712 26266846 FLAM_C SINE + chr6:26267273-26267384 chr6 26267273 26267384 MER4C LTR + chr6:26267384-26267787 chr6 26267384 26267787 MER34B LTR + chr6:26267851-26268181 chr6 26267851 26268181 L2a LINE + chr6:26268633-26269571 chr6 26268633 26269571 LTR8 LTR + chr6:26268888-26269156 chr6 26268888 26269156 AluSz SINE + chr6:26269592-26269712 chr6 26269592 26269712 L1MC5 LINE + chr6:26269933-26269971 chr6 26269933 26269971 (A)n Simple_repeat + chr6:26270591-26270628 chr6 26270591 26270628 MER5A DNA - chr6:26271863-26271953 chr6 26271863 26271953 MER5A1 DNA - chr6:26272930-26272962 chr6 26272930 26272962 (A)n Simple_repeat + chr6:26273743-26274032 chr6 26273743 26274032 AluSq2 SINE + chr6:26304906-26304934 chr6 26304906 26304934 (TTCT)n Simple_repeat + chr6:26305716-26305798 chr6 26305716 26305798 tRNA-Ser-AGY tRNA - chr6:26524183-26524207 chr6 26524183 26524207 (GAAGA)n Simple_repeat + chr6:26537725-26537798 chr6 26537725 26537798 tRNA-Arg-CGY_ tRNA + chr6:26556773-26556847 chr6 26556773 26556847 tRNA-Lys-AAG tRNA + chr6:26577331-26577421 chr6 26577331 26577421 tRNA-Tyr-TAC tRNA + chr6:26600355-26600405 chr6 26600355 26600405 (TCTTGTT)n Simple_repeat + chr6:26705605-26705678 chr6 26705605 26705678 tRNA-Ala-GCY tRNA + chr6:26721219-26721294 chr6 26721219 26721294 tRNA-Ile-ATT tRNA - chr6:26730736-26730809 chr6 26730736 26730809 tRNA-Ala-GCY tRNA + chr6:26771289-26771362 chr6 26771289 26771362 tRNA-Ala-GCY tRNA - chr6:26780831-26780906 chr6 26780831 26780906 tRNA-Ile-ATT tRNA + chr6:26836264-26836313 chr6 26836264 26836313 (TATGTA)n Simple_repeat + chr6:26836863-26836927 chr6 26836863 26836927 U4 snRNA - chr6:26839160-26839195 chr6 26839160 26839195 (TG)n Simple_repeat + chr6:26839724-26840109 chr6 26839724 26840109 MLT1A1 LTR + chr6:26842218-26842268 chr6 26842218 26842268 (AT)n Simple_repeat + chr6:26844709-26844876 chr6 26844709 26844876 ERVL-E-int LTR + chr6:26845239-26845299 chr6 26845239 26845299 AluYj4 SINE - chr6:26845404-26845497 chr6 26845404 26845497 (CTTTTCC)n Simple_repeat + chr6:26847518-26847549 chr6 26847518 26847549 (ATGA)n Simple_repeat + chr6:26847865-26847980 chr6 26847865 26847980 MER3 DNA - chr6:26905114-26905150 chr6 26905114 26905150 A-rich Low_complexity + chr6:26908941-26909011 chr6 26908941 26909011 MER47A DNA + chr6:26913199-26913232 chr6 26913199 26913232 (TTG)n Simple_repeat + chr6:26915036-26915056 chr6 26915036 26915056 (T)n Simple_repeat + chr6:27065084-27065166 chr6 27065084 27065166 tRNA-Ser-AGY tRNA + chr6:27092230-27092253 chr6 27092230 27092253 (GAAT)n Simple_repeat + chr6:27125905-27125977 chr6 27125905 27125977 tRNA-His-CAY_ tRNA + chr6:27325737-27325905 chr6 27325737 27325905 MIR3 SINE - chr6:27328796-27329026 chr6 27328796 27329026 HAL1 LINE - chr6:27329145-27329187 chr6 27329145 27329187 (AACAAA)n Simple_repeat + chr6:27329579-27329618 chr6 27329579 27329618 MIR3 SINE - chr6:27329812-27330023 chr6 27329812 27330023 AluSp SINE - chr6:27330802-27330875 chr6 27330802 27330875 MIRb SINE - chr6:27331185-27331315 chr6 27331185 27331315 L2d2 LINE - chr6:27331322-27331595 chr6 27331322 27331595 AluJb SINE + chr6:27331762-27332069 chr6 27331762 27332069 AluSx1 SINE - chr6:27332147-27332357 chr6 27332147 27332357 MIR SINE + chr6:27333143-27333433 chr6 27333143 27333433 AluSx SINE + chr6:27335031-27335213 chr6 27335031 27335213 L2a LINE - chr6:27335214-27335576 chr6 27335214 27335576 MSTA LTR - chr6:27337685-27337717 chr6 27337685 27337717 (AAAC)n Simple_repeat + chr6:27338071-27338256 chr6 27338071 27338256 MER3 DNA - chr6:27338579-27338858 chr6 27338579 27338858 AluSc SINE - chr6:27339396-27339788 chr6 27339396 27339788 L2a LINE - chr6:27339474-27339497 chr6 27339474 27339497 (A)n Simple_repeat + chr6:27339911-27340111 chr6 27339911 27340111 MIRc SINE + chr6:27340166-27340348 chr6 27340166 27340348 MER5A DNA + chr6:27340462-27340785 chr6 27340462 27340785 AluY SINE - chr6:27340857-27341045 chr6 27340857 27341045 MER20B DNA + chr6:27341046-27341071 chr6 27341046 27341071 (T)n Simple_repeat + chr6:27341182-27341353 chr6 27341182 27341353 MER20B DNA + chr6:27341405-27341505 chr6 27341405 27341505 MIRb SINE - chr6:27342164-27342202 chr6 27342164 27342202 (GT)n Simple_repeat + chr6:27446590-27446672 chr6 27446590 27446672 tRNA-Ser-TCY tRNA + chr6:27470817-27470899 chr6 27470817 27470899 tRNA-Ser-TCY tRNA + chr6:27513467-27513549 chr6 27513467 27513549 tRNA-Ser-TCA_ tRNA + chr6:27573415-27573524 chr6 27573415 27573524 tRNA-Leu-TTG tRNA - chr6:27599199-27599293 chr6 27599199 27599293 tRNA-Ile-ATA tRNA + chr6:27618706-27618779 chr6 27618706 27618779 tRNA-Val-GTY tRNA - chr6:27636361-27636436 chr6 27636361 27636436 tRNA-Ile-ATT tRNA + chr6:27640226-27640310 chr6 27640226 27640310 tRNA-Ser-TCG tRNA - chr6:27655966-27656040 chr6 27655966 27656040 tRNA-Ile-ATT tRNA + chr6:27679927-27679952 chr6 27679927 27679952 (TTTGT)n Simple_repeat + chr6:27759135-27759206 chr6 27759135 27759206 tRNA-Gln-CAA tRNA - chr6:27781791-27781900 chr6 27781791 27781900 AluSx1 SINE + chr6:27781943-27781966 chr6 27781943 27781966 (A)n Simple_repeat + chr6:27793524-27793559 chr6 27793524 27793559 (AATTTT)n Simple_repeat + chr6:27798056-27798090 chr6 27798056 27798090 MER5B DNA + chr6:27798548-27798714 chr6 27798548 27798714 AluYh9 SINE + chr6:27804812-27805444 chr6 27804812 27805444 MER51D LTR - chr6:28103875-28103892 chr6 28103875 28103892 (A)n Simple_repeat + chr6:28133150-28133186 chr6 28133150 28133186 (TTG)n Simple_repeat + chr6:28135448-28135476 chr6 28135448 28135476 (TTG)n Simple_repeat + chr6:28235002-28235046 chr6 28235002 28235046 G-rich Low_complexity + chr6:28235861-28236017 chr6 28235861 28236017 MIR SINE + chr6:28236918-28237132 chr6 28236918 28237132 (TA)n Simple_repeat + chr6:28239569-28239615 chr6 28239569 28239615 (TGTTAC)n Simple_repeat + chr6:28240671-28240812 chr6 28240671 28240812 L1ME1 LINE - chr6:28240919-28241016 chr6 28240919 28241016 FRAM SINE + chr6:28242845-28242895 chr6 28242845 28242895 (TTCACT)n Simple_repeat + chr6:28243191-28243289 chr6 28243191 28243289 L2c LINE - chr6:28243443-28243572 chr6 28243443 28243572 MIR3 SINE - chr6:28245077-28245127 chr6 28245077 28245127 MER103C DNA + chr6:28245192-28245328 chr6 28245192 28245328 Tigger10 DNA + chr6:28245716-28245794 chr6 28245716 28245794 Tigger10 DNA + chr6:28391867-28394539 chr6 28391867 28394539 Tigger1 DNA - chr6:28393094-28393382 chr6 28393094 28393382 AluJb SINE - chr6:28396558-28396629 chr6 28396558 28396629 Charlie17b DNA + chr6:28397032-28397103 chr6 28397032 28397103 L2c LINE + chr6:28398147-28398175 chr6 28398147 28398175 (AACC)n Simple_repeat + chr6:28399128-28399225 chr6 28399128 28399225 MER94 DNA + chr6:28399254-28399358 chr6 28399254 28399358 MER5A DNA - chr6:28400253-28400427 chr6 28400253 28400427 Tigger23a DNA - chr6:28442328-28442402 chr6 28442328 28442402 tRNA-Thr-ACG_ tRNA - chr6:28505366-28505460 chr6 28505366 28505460 tRNA-Ile-ATA tRNA + chr6:28601857-28601928 chr6 28601857 28601928 tRNA-Ala-GCG tRNA - chr6:28660986-28661060 chr6 28660986 28661060 tRNA-Lys-AAA tRNA - chr6:28693794-28693868 chr6 28693794 28693868 tRNA-Thr-ACY_ tRNA + chr6:28726140-28726212 chr6 28726140 28726212 tRNA-Ala-GCA tRNA - chr6:28770576-28770647 chr6 28770576 28770647 tRNA-Ala-GCA tRNA - chr6:28863998-28864105 chr6 28863998 28864105 tRNA-Leu-TTG tRNA - chr6:28908829-28908935 chr6 28908829 28908935 tRNA-Leu-TTG tRNA + chr6:28945251-28945550 chr6 28945251 28945550 7SLRNA srpRNA + chr6:30012201-30012231 chr6 30012201 30012231 (TCTA)n Simple_repeat + chr6:30013056-30013087 chr6 30013056 30013087 (TTTATA)n Simple_repeat + chr6:30019553-30019590 chr6 30019553 30019590 (CA)n Simple_repeat + chr6:30024027-30024221 chr6 30024027 30024221 L2c LINE + chr6:3020698-3020734 chr6 3020698 3020734 (TTTTC)n Simple_repeat + chr6:30257378-30257469 chr6 30257378 30257469 Tigger19a DNA + chr6:30257535-30257582 chr6 30257535 30257582 L2c LINE + chr6:30257766-30258150 chr6 30257766 30258150 L2d2 LINE + chr6:30258229-30258337 chr6 30258229 30258337 MLT2D LTR - chr6:30260811-30260846 chr6 30260811 30260846 A-rich Low_complexity + chr6:30260850-30261029 chr6 30260850 30261029 MIRb SINE - chr6:30261045-30261312 chr6 30261045 30261312 L3 LINE - chr6:30261349-30261415 chr6 30261349 30261415 L1MEa LINE - chr6:30261438-30261635 chr6 30261438 30261635 L2c LINE - chr6:30261666-30261894 chr6 30261666 30261894 MIR SINE + chr6:30263020-30263315 chr6 30263020 30263315 AluSx SINE + chr6:30263828-30264087 chr6 30263828 30264087 MLT1I LTR - chr6:30264485-30264697 chr6 30264485 30264697 MIRb SINE - chr6:30264840-30265119 chr6 30264840 30265119 AluJr SINE - chr6:30265539-30265850 chr6 30265539 30265850 AluSx1 SINE - chr6:30268729-30269026 chr6 30268729 30269026 AluSz SINE - chr6:30270132-30270304 chr6 30270132 30270304 MIRb SINE - chr6:30271096-30271200 chr6 30271096 30271200 MIRc SINE - chr6:30272426-30272735 chr6 30272426 30272735 AluSq2 SINE - chr6:30273004-30273126 chr6 30273004 30273126 MER5A DNA - chr6:30273176-30273327 chr6 30273176 30273327 MER5A1 DNA - chr6:30274648-30274754 chr6 30274648 30274754 Charlie19a DNA - chr6:30275601-30275704 chr6 30275601 30275704 MIRc SINE - chr6:30276378-30276675 chr6 30276378 30276675 AluSc5 SINE - chr6:30276679-30276977 chr6 30276679 30276977 AluSx SINE - chr6:30277149-30277214 chr6 30277149 30277214 LTR81 LTR - chr6:30279593-30279686 chr6 30279593 30279686 MIRc SINE + chr6:30280762-30281210 chr6 30280762 30281210 MLT1C LTR + chr6:30282445-30282545 chr6 30282445 30282545 MER45A DNA - chr6:30282666-30282918 chr6 30282666 30282918 LTR16C LTR + chr6:30283778-30283944 chr6 30283778 30283944 MER5B DNA - chr6:30284047-30284226 chr6 30284047 30284226 MLT1J LTR - chr6:30286008-30286396 chr6 30286008 30286396 MSTA LTR - chr6:30286420-30286557 chr6 30286420 30286557 FLAM_C SINE + chr6:30287455-30287735 chr6 30287455 30287735 LTR29 LTR - chr6:30288005-30288301 chr6 30288005 30288301 AluSz SINE - chr6:30289119-30289868 chr6 30289119 30289868 MER44C DNA - chr6:30289932-30289992 chr6 30289932 30289992 MER84 LTR + chr6:30292157-30293008 chr6 30292157 30293008 L3 LINE - chr6:30292453-30292763 chr6 30292453 30292763 AluSx SINE - chr6:30293923-30294061 chr6 30293923 30294061 L2b LINE - chr6:30559319-30559623 chr6 30559319 30559623 AluSz SINE - chr6:30561147-30561273 chr6 30561147 30561273 MIR SINE + chr6:30693630-30693712 chr6 30693630 30693712 AluJb SINE - chr6:30812058-30812086 chr6 30812058 30812086 GA-rich Low_complexity + chr6:30867991-30868050 chr6 30867991 30868050 (CCCACTT)n Simple_repeat + chr6:30868200-30868999 chr6 30868200 30868999 Charlie4a DNA - chr6:30868298-30868606 chr6 30868298 30868606 AluSz6 SINE + chr6:3159971-3160008 chr6 3159971 3160008 (ACCCCC)n Simple_repeat + chr6:3162045-3162098 chr6 3162045 3162098 (TACA)n Simple_repeat + chr6:3162071-3162099 chr6 3162071 3162099 (TA)n Simple_repeat + chr6:3162728-3162791 chr6 3162728 3162791 (TCCC)n Simple_repeat + chr6:3163286-3163318 chr6 3163286 3163318 (CGCGG)n Simple_repeat + chr6:3163398-3163426 chr6 3163398 3163426 (CCCGC)n Simple_repeat + chr6:3166992-3167066 chr6 3166992 3167066 PRIMA4_LTR LTR + chr6:3191823-3191856 chr6 3191823 3191856 (AAAAT)n Simple_repeat + chr6:3194767-3194802 chr6 3194767 3194802 (AC)n Simple_repeat + chr6:3196465-3196518 chr6 3196465 3196518 G-rich Low_complexity + chr6:3196674-3196712 chr6 3196674 3196712 LTR82A LTR + chr6:3197373-3197416 chr6 3197373 3197416 A-rich Low_complexity + chr6:3200947-3201023 chr6 3200947 3201023 Charlie1 DNA + chr6:3201006-3201068 chr6 3201006 3201068 Charlie1a DNA + chr6:3207712-3207762 chr6 3207712 3207762 (TG)n Simple_repeat + chr6:3208915-3208943 chr6 3208915 3208943 (AG)n Simple_repeat + chr6:3209193-3209248 chr6 3209193 3209248 L2a LINE + chr6:3211531-3211580 chr6 3211531 3211580 (CCT)n Simple_repeat + chr6:32235293-32235326 chr6 32235293 32235326 (T)n Simple_repeat + chr6:32237799-32237826 chr6 32237799 32237826 (ATTA)n Simple_repeat + chr6:32242970-32243004 chr6 32242970 32243004 A-rich Low_complexity + chr6:32253365-32253399 chr6 32253365 32253399 L1P3 LINE + chr6:32253724-32253762 chr6 32253724 32253762 (ATTT)n Simple_repeat + chr6:32346408-32346441 chr6 32346408 32346441 (GATA)n Simple_repeat + chr6:32863671-32863753 chr6 32863671 32863753 Arthur1 DNA + chr6:32863772-32863941 chr6 32863772 32863941 Arthur1 DNA + chr6:32865180-32865198 chr6 32865180 32865198 (CA)n Simple_repeat + chr6:32866260-32866283 chr6 32866260 32866283 (T)n Simple_repeat + chr6:32867714-32869113 chr6 32867714 32869113 Charlie2b DNA - chr6:32868425-32868514 chr6 32868425 32868514 FLAM_C SINE + chr6:32868660-32868686 chr6 32868660 32868686 (T)n Simple_repeat + chr6:32868780-32868916 chr6 32868780 32868916 FLAM_A SINE + chr6:32869113-32869297 chr6 32869113 32869297 MER20 DNA - chr6:32869297-32869773 chr6 32869297 32869773 L1MC2 LINE + chr6:33085148-33085198 chr6 33085148 33085198 (GGAGGAT)n Simple_repeat + chr6:33085515-33092101 chr6 33085515 33092101 HUERS-P3-int LTR - chr6:33086708-33086888 chr6 33086708 33086888 PABL_A-int LTR - chr6:33089714-33090711 chr6 33089714 33090711 LTR5B LTR - chr6:33092146-33092780 chr6 33092146 33092780 LTR9C LTR - chr6:33093206-33093272 chr6 33093206 33093272 MER5B DNA + chr6:33093272-33093379 chr6 33093272 33093379 MER5A1 DNA - chr6:33102979-33103017 chr6 33102979 33103017 (CCTT)n Simple_repeat + chr6:33107933-33107993 chr6 33107933 33107993 MIR3 SINE - chr6:33244616-33244645 chr6 33244616 33244645 (T)n Simple_repeat + chr6:35438918-35439068 chr6 35438918 35439068 AluSp SINE - chr6:35440339-35440378 chr6 35440339 35440378 MER53 DNA + chr6:35440369-35440461 chr6 35440369 35440461 MER53 DNA + chr6:36573835-36574049 chr6 36573835 36574049 AluJr SINE - chr6:36575308-36575420 chr6 36575308 36575420 AluJr4 SINE - chr6:36576954-36577067 chr6 36576954 36577067 MIR1_Amn SINE - chr6:36577087-36577190 chr6 36577087 36577190 MIR3 SINE - chr6:36577789-36577917 chr6 36577789 36577917 MIRb SINE + chr6:36577937-36577976 chr6 36577937 36577976 MER5B DNA - chr6:36607336-36607449 chr6 36607336 36607449 U1 snRNA - chr6:37073454-37073475 chr6 37073454 37073475 (TCAC)n Simple_repeat + chr6:37090545-37090624 chr6 37090545 37090624 L2d LINE + chr6:37094609-37094634 chr6 37094609 37094634 (A)n Simple_repeat + chr6:37098675-37098711 chr6 37098675 37098711 (GT)n Simple_repeat + chr6:37104073-37104099 chr6 37104073 37104099 (A)n Simple_repeat + chr6:39154570-39154668 chr6 39154570 39154668 MIR SINE + chr6:4018049-4018072 chr6 4018049 4018072 (AAC)n Simple_repeat + chr6:41902029-41902275 chr6 41902029 41902275 Tigger9b DNA + chr6:42997338-42997657 chr6 42997338 42997657 AluSz6 SINE - chr6:42998020-42998293 chr6 42998020 42998293 AluSq SINE + chr6:42998325-42998618 chr6 42998325 42998618 AluSg SINE + chr6:42998618-42999655 chr6 42998618 42999655 L1MEd LINE + chr6:42998689-42998741 chr6 42998689 42998741 Alu SINE - chr6:42998862-42999176 chr6 42998862 42999176 AluY SINE + chr6:42999202-42999498 chr6 42999202 42999498 AluSp SINE + chr6:42999655-42999953 chr6 42999655 42999953 AluJr SINE + chr6:43000017-43000303 chr6 43000017 43000303 AluSz SINE - chr6:43000306-43000336 chr6 43000306 43000336 (T)n Simple_repeat + chr6:43000378-43000539 chr6 43000378 43000539 AluJb SINE + chr6:43000566-43000699 chr6 43000566 43000699 FAM SINE + chr6:43000710-43001013 chr6 43000710 43001013 AluSc8 SINE + chr6:43001463-43001531 chr6 43001463 43001531 MLT1N2 LTR - chr6:43001652-43001921 chr6 43001652 43001921 L1MB8 LINE - chr6:43004574-43004600 chr6 43004574 43004600 (TTTC)n Simple_repeat + chr6:43004600-43004606 chr6 43004600 43004606 (T)n Simple_repeat + chr6:44185220-44185273 chr6 44185220 44185273 (CTG)n Simple_repeat + chr6:48037396-48037425 chr6 48037396 48037425 (TG)n Simple_repeat + chr6:49520363-49520419 chr6 49520363 49520419 Plat_L3 LINE - chr6:49520421-49520508 chr6 49520421 49520508 MIRb SINE - chr6:52125761-52125791 chr6 52125761 52125791 (GGAAA)n Simple_repeat + chr6:52529537-52529572 chr6 52529537 52529572 (TCCC)n Simple_repeat + chr6:52530499-52530613 chr6 52530499 52530613 MIRb SINE - chr6:52531074-52531163 chr6 52531074 52531163 MER81 DNA + chr6:52860417-52860749 chr6 52860417 52860749 7SK RNA + chr6:53631791-53631821 chr6 53631791 53631821 (TCC)n Simple_repeat + chr6:54807349-54807372 chr6 54807349 54807372 (T)n Simple_repeat + chr6:54809697-54809794 chr6 54809697 54809794 FLAM_C SINE - chr6:58141876-58141949 chr6 58141876 58141949 tRNA-Ala-GCY tRNA - chr6:58149253-58149328 chr6 58149253 58149328 tRNA-Ile-ATT tRNA + chr6:58234966-58234999 chr6 58234966 58234999 (CA)n Simple_repeat + chr6:58235539-58235588 chr6 58235539 58235588 (TATGTA)n Simple_repeat + chr6:58236140-58236206 chr6 58236140 58236206 U4 snRNA - chr6:58243864-58243955 chr6 58243864 58243955 MLT1I LTR + chr6:58247102-58247130 chr6 58247102 58247130 (ATGA)n Simple_repeat + chr6:58273501-58273530 chr6 58273501 58273530 A-rich Low_complexity + chr6:58279210-58279274 chr6 58279210 58279274 MER21C LTR - chr6:58279323-58279342 chr6 58279323 58279342 (A)n Simple_repeat + chr6:58279666-58279871 chr6 58279666 58279871 MIRc SINE - chr6:58280335-58280379 chr6 58280335 58280379 L1MA3 LINE + chr6:58283399-58283427 chr6 58283399 58283427 (TAA)n Simple_repeat + chr6:74221576-74221649 chr6 74221576 74221649 MIRc SINE + chr6:74222912-74223204 chr6 74222912 74223204 L2a LINE + chr6:74223286-74223516 chr6 74223286 74223516 L1M5 LINE + chr6:74223745-74224338 chr6 74223745 74224338 AluJb SINE - chr6:74224361-74224416 chr6 74224361 74224416 AluYj4 SINE - chr6:74224416-74224656 chr6 74224416 74224656 AluSx4 SINE - chr6:74225164-74225362 chr6 74225164 74225362 AluJb SINE + chr6:77268665-77274744 chr6 77268665 77274744 L1MEh LINE - chr6:77271307-77271424 chr6 77271307 77271424 LTR68 LTR + chr6:77273169-77274527 chr6 77273169 77274527 L1PB4 LINE - chr6:77274833-77275026 chr6 77274833 77275026 MIRc SINE - chr6:80247735-80247771 chr6 80247735 80247771 (T)n Simple_repeat + chr6:81056706-81056734 chr6 81056706 81056734 A-rich Low_complexity + chr6:86311785-86311812 chr6 86311785 86311812 (A)n Simple_repeat + chr6:86311870-86311906 chr6 86311870 86311906 MIRb SINE - chr6:86316163-86316240 chr6 86316163 86316240 L2a LINE - chr6:86383831-86384054 chr6 86383831 86384054 L2 LINE + chr6:86384061-86384201 chr6 86384061 86384201 L1MA10 LINE + chr6:86385118-86385369 chr6 86385118 86385369 AluJb SINE - chr6:86388867-86388899 chr6 86388867 86388899 (GCTG)n Simple_repeat + chr6:87974807-87974825 chr6 87974807 87974825 (TC)n Simple_repeat + chr6:88052777-88052881 chr6 88052777 88052881 MER81 DNA - chr6:88223747-88224047 chr6 88223747 88224047 AluSp SINE + chr6:90540111-90540180 chr6 90540111 90540180 MIR SINE + chr6:90540511-90540733 chr6 90540511 90540733 MIR SINE + chr6:90540916-90541214 chr6 90540916 90541214 AluJb SINE - chr6:90541665-90541919 chr6 90541665 90541919 AluSx SINE - chr6:90542240-90542549 chr6 90542240 90542549 AluSx SINE - chr6:90542549-90542851 chr6 90542549 90542851 AluSx3 SINE - chr6:90542982-90543131 chr6 90542982 90543131 L2b LINE - chr6:90543851-90544142 chr6 90543851 90544142 AluSg4 SINE + chr6:90544149-90544446 chr6 90544149 90544446 AluSx SINE - chr6:90544505-90544832 chr6 90544505 90544832 AluSx SINE - chr6:90545007-90545251 chr6 90545007 90545251 AluJo SINE - chr6:90545498-90545578 chr6 90545498 90545578 AluYe6 SINE - chr6:90545864-90546106 chr6 90545864 90546106 AluSc SINE - chr6:90546452-90546775 chr6 90546452 90546775 AluJb SINE - chr6:90546792-90547088 chr6 90546792 90547088 AluSz6 SINE - chr6:90547096-90547414 chr6 90547096 90547414 AluY SINE - chr6:90547518-90547790 chr6 90547518 90547790 AluSz SINE - chr6:90548302-90548318 chr6 90548302 90548318 (ATT)n Simple_repeat + chr6:90548318-90548437 chr6 90548318 90548437 FLAM_C SINE - chr6:90549103-90549396 chr6 90549103 90549396 AluSx1 SINE - chr6:90549491-90549800 chr6 90549491 90549800 AluSx1 SINE + chr6:90551048-90551149 chr6 90551048 90551149 HY1 scRNA + chr6:90551234-90551525 chr6 90551234 90551525 AluJb SINE - chr6:90551526-90551822 chr6 90551526 90551822 AluSg SINE - chr6:90551828-90551958 chr6 90551828 90551958 AluJo SINE - chr6:90552044-90552259 chr6 90552044 90552259 Tigger13a DNA + chr6:90552487-90552598 chr6 90552487 90552598 AluJb SINE + chr6:90552690-90552708 chr6 90552690 90552708 (GT)n Simple_repeat + chr6:90552857-90553223 chr6 90552857 90553223 LTR57 LTR - chr6:90553395-90553422 chr6 90553395 90553422 (TG)n Simple_repeat + chr6:90553422-90553707 chr6 90553422 90553707 AluSq SINE - chr6:90555827-90556155 chr6 90555827 90556155 AluSz6 SINE + chr6:90556392-90556694 chr6 90556392 90556694 AluJr4 SINE - chr6:90557001-90557295 chr6 90557001 90557295 AluSg SINE + chr6:90557375-90557682 chr6 90557375 90557682 AluSx1 SINE - chr6:90558067-90558362 chr6 90558067 90558362 AluSp SINE + chr6:90558600-90558895 chr6 90558600 90558895 AluSp SINE - chr6:90558903-90558947 chr6 90558903 90558947 (TTG)n Simple_repeat + chr6:90558947-90559230 chr6 90558947 90559230 AluY SINE - chr6:90559332-90559625 chr6 90559332 90559625 AluSx SINE - chr6:90559643-90559671 chr6 90559643 90559671 (AC)n Simple_repeat + chr6:90559672-90559867 chr6 90559672 90559867 L1MC4 LINE - chr6:90560279-90560603 chr6 90560279 90560603 AluSx SINE + chr6:90561045-90561340 chr6 90561045 90561340 AluJb SINE - chr6:90561956-90562201 chr6 90561956 90562201 AluJo SINE - chr6:90562310-90562341 chr6 90562310 90562341 (TC)n Simple_repeat + chr6:90562345-90562632 chr6 90562345 90562632 AluSz6 SINE - chr6:90562634-90562766 chr6 90562634 90562766 AluSz SINE - chr6:90563265-90563567 chr6 90563265 90563567 AluSc8 SINE - chr6:90563901-90564193 chr6 90563901 90564193 AluSx SINE + chr6:90564210-90564486 chr6 90564210 90564486 AluSz SINE + chr6:90565297-90565599 chr6 90565297 90565599 AluJr4 SINE + chr6:90566125-90566432 chr6 90566125 90566432 AluSx1 SINE - chr6:90566633-90566718 chr6 90566633 90566718 MIR SINE + chr6:90567014-90567334 chr6 90567014 90567334 AluJr SINE - chr6:90567497-90567800 chr6 90567497 90567800 AluSp SINE + chr6:90568363-90568657 chr6 90568363 90568657 AluSc SINE - chr6:90568830-90569124 chr6 90568830 90569124 AluSx1 SINE - chr6:90569272-90569582 chr6 90569272 90569582 AluSz SINE - chr6:90569613-90570142 chr6 90569613 90570142 L1MC5a LINE - chr6:90569680-90570084 chr6 90569680 90570084 MLT1B LTR - chr6:90570281-90570586 chr6 90570281 90570586 AluJr SINE + chr6:90571111-90571428 chr6 90571111 90571428 AluJb SINE - chr6:90571466-90571750 chr6 90571466 90571750 AluSx1 SINE - chr6:90574232-90574539 chr6 90574232 90574539 AluSx4 SINE - chr6:90574548-90574847 chr6 90574548 90574847 AluSc SINE - chr6:90574885-90575178 chr6 90574885 90575178 AluSx4 SINE + chr6:90575244-90575545 chr6 90575244 90575545 AluY SINE + chr6:90575573-90575624 chr6 90575573 90575624 (TGTAATA)n Simple_repeat + chr6:90578864-90579002 chr6 90578864 90579002 AluJb SINE + chr6:90579002-90579309 chr6 90579002 90579309 AluYk3 SINE + chr6:90579312-90579630 chr6 90579312 90579630 AluYm1 SINE + chr6:90580119-90580151 chr6 90580119 90580151 (TTTG)n Simple_repeat + chr6:90580151-90580334 chr6 90580151 90580334 AluSp SINE - chr6:90582478-90582584 chr6 90582478 90582584 AluSg SINE - chr6:90582621-90582825 chr6 90582621 90582825 AluSx SINE + chr6:90583063-90583180 chr6 90583063 90583180 FLAM_C SINE - chr6:90583963-90584037 chr6 90583963 90584037 (ATGT)n Simple_repeat + chr6:94495531-94495561 chr6 94495531 94495561 (TG)n Simple_repeat + chr6:94509276-94509306 chr6 94509276 94509306 (GT)n Simple_repeat + chr6:94518702-94518751 chr6 94518702 94518751 (TTCAA)n Simple_repeat + chr6:94518894-94518956 chr6 94518894 94518956 (ACATAT)n Simple_repeat + chr6:94523264-94525790 chr6 94523264 94525790 L1ME1 LINE + chr6:94523675-94523714 chr6 94523675 94523714 (AC)n Simple_repeat + chr6:94537461-94537527 chr6 94537461 94537527 L1MEi LINE - chr6:94538648-94546085 chr6 94538648 94546085 L1P3 LINE - chr6:94539541-94539875 chr6 94539541 94539875 THE1C LTR + chr6:94539873-94545467 chr6 94539873 94545467 HERVH-int LTR - chr6:99876051-99876083 chr6 99876051 99876083 (AATG)n Simple_repeat + chr6:99878966-99879096 chr6 99878966 99879096 L2 LINE + chr7:100287798-100287869 chr7 100287798 100287869 L3 LINE - chr7:100295040-100295085 chr7 100295040 100295085 GA-rich Low_complexity + chr7:100298859-100298931 chr7 100298859 100298931 (TCCT)n Simple_repeat + chr7:100298892-100298916 chr7 100298892 100298916 (TC)n Simple_repeat + chr7:100737633-100737672 chr7 100737633 100737672 (T)n Simple_repeat + chr7:100809067-100809093 chr7 100809067 100809093 (AATG)n Simple_repeat + chr7:100942927-100944491 chr7 100942927 100944491 L1M2 LINE + chr7:100944852-100945446 chr7 100944852 100945446 AluJb SINE - chr7:100945020-100945312 chr7 100945020 100945312 AluSq2 SINE - chr7:100945512-100945606 chr7 100945512 100945606 Alu SINE + chr7:100945638-100945937 chr7 100945638 100945937 AluSq2 SINE - chr7:100946089-100947719 chr7 100946089 100947719 L1M2 LINE + chr7:100947877-100948174 chr7 100947877 100948174 AluSx SINE - chr7:100948320-100948627 chr7 100948320 100948627 AluYm1 SINE + chr7:100948674-100949602 chr7 100948674 100949602 L1MB3 LINE + chr7:100948811-100948974 chr7 100948811 100948974 AluSz6 SINE - chr7:100948974-100949270 chr7 100948974 100949270 AluSp SINE - chr7:100949615-100949829 chr7 100949615 100949829 AluSz SINE + chr7:100949832-100950134 chr7 100949832 100950134 AluSc SINE + chr7:100950739-100951451 chr7 100950739 100951451 L1MC4a LINE + chr7:100950770-100951076 chr7 100950770 100951076 AluSp SINE + chr7:100951126-100951402 chr7 100951126 100951402 AluSg SINE + chr7:100951609-100954205 chr7 100951609 100954205 L1M2 LINE + chr7:100952502-100953507 chr7 100952502 100953507 LTR13 LTR - chr7:100954270-100954571 chr7 100954270 100954571 AluY SINE - chr7:100955010-100955235 chr7 100955010 100955235 AluSg4 SINE + chr7:100955402-100955731 chr7 100955402 100955731 AluJr SINE + chr7:102119993-102120272 chr7 102119993 102120272 AluJr SINE - chr7:102120934-102121481 chr7 102120934 102121481 L1MC5 LINE - chr7:102121233-102121365 chr7 102121233 102121365 FLAM_A SINE - chr7:102121517-102121641 chr7 102121517 102121641 L1MB4 LINE - chr7:102121669-102121804 chr7 102121669 102121804 FLAM_A SINE - chr7:102121829-102122132 chr7 102121829 102122132 AluSx SINE + chr7:102158519-102158745 chr7 102158519 102158745 AluSx SINE - chr7:102158819-102158861 chr7 102158819 102158861 (TGTA)n Simple_repeat + chr7:102158863-102159148 chr7 102158863 102159148 AluJr SINE - chr7:102159210-102159619 chr7 102159210 102159619 ORSL DNA + chr7:102159249-102159553 chr7 102159249 102159553 AluSx1 SINE - chr7:102159708-102160014 chr7 102159708 102160014 AluJr SINE + chr7:102160017-102160345 chr7 102160017 102160345 AluSq2 SINE + chr7:102160347-102160645 chr7 102160347 102160645 L1MB2 LINE + chr7:102160645-102160938 chr7 102160645 102160938 AluSx SINE + chr7:102160948-102161254 chr7 102160948 102161254 AluSz SINE + chr7:102161298-102161631 chr7 102161298 102161631 ORSL-2b DNA - chr7:102162077-102162370 chr7 102162077 102162370 AluSg SINE + chr7:102162519-102162830 chr7 102162519 102162830 AluJr SINE + chr7:102162830-102163007 chr7 102162830 102163007 MIRb SINE + chr7:102163146-102163439 chr7 102163146 102163439 AluSz SINE - chr7:102163439-102163575 chr7 102163439 102163575 AluSz SINE - chr7:102163794-102163870 chr7 102163794 102163870 (GACA)n Simple_repeat + chr7:102163880-102164172 chr7 102163880 102164172 AluSq2 SINE + chr7:102164194-102164361 chr7 102164194 102164361 AluSz6 SINE + chr7:102164726-102165026 chr7 102164726 102165026 AluSx1 SINE - chr7:102165030-102165060 chr7 102165030 102165060 (TTG)n Simple_repeat + chr7:102165064-102165259 chr7 102165064 102165259 AluSz6 SINE + chr7:102165267-102165398 chr7 102165267 102165398 AluJr4 SINE - chr7:102165599-102165772 chr7 102165599 102165772 L2d LINE - chr7:102166410-102166715 chr7 102166410 102166715 AluJr SINE - chr7:102166715-102167779 chr7 102166715 102167779 L1ME3 LINE - chr7:102166905-102167191 chr7 102166905 102167191 AluJo SINE - chr7:102167431-102167698 chr7 102167431 102167698 AluSx1 SINE - chr7:102167779-102168561 chr7 102167779 102168561 L2b LINE + chr7:102168065-102168410 chr7 102168065 102168410 AluSz SINE - chr7:102168252-102168290 chr7 102168252 102168290 (TTAT)n Simple_repeat + chr7:102169435-102169725 chr7 102169435 102169725 AluSz SINE - chr7:102169939-102170128 chr7 102169939 102170128 AluSx SINE - chr7:102170155-102170337 chr7 102170155 102170337 AluSz SINE - chr7:102170344-102170649 chr7 102170344 102170649 AluSx1 SINE - chr7:102171564-102171756 chr7 102171564 102171756 (TCTCCC)n Simple_repeat + chr7:102171756-102172071 chr7 102171756 102172071 AluJr SINE - chr7:102172271-102172334 chr7 102172271 102172334 GA-rich Low_complexity + chr7:102172802-102172867 chr7 102172802 102172867 (GAGT)n Simple_repeat + chr7:102172919-102173213 chr7 102172919 102173213 AluSg SINE - chr7:102173213-102173258 chr7 102173213 102173258 MIR3 SINE - chr7:102173803-102174112 chr7 102173803 102174112 AluSx1 SINE + chr7:102174470-102174795 chr7 102174470 102174795 AluSz SINE + chr7:102174942-102175234 chr7 102174942 102175234 AluJr SINE + chr7:102175252-102175411 chr7 102175252 102175411 FRAM SINE + chr7:102175489-102175892 chr7 102175489 102175892 LTR33 LTR + chr7:102175968-102176584 chr7 102175968 102176584 AluJr SINE - chr7:102176121-102176423 chr7 102176121 102176423 AluSx SINE - chr7:102177125-102177270 chr7 102177125 102177270 L2d LINE + chr7:102177270-102177552 chr7 102177270 102177552 AluJr SINE + chr7:102177555-102177723 chr7 102177555 102177723 FRAM SINE + chr7:102177945-102178097 chr7 102177945 102178097 AluJb SINE - chr7:102178111-102178242 chr7 102178111 102178242 MIRc SINE - chr7:102257498-102257724 chr7 102257498 102257724 AluSx SINE - chr7:102257790-102257832 chr7 102257790 102257832 (TGTA)n Simple_repeat + chr7:102257838-102258123 chr7 102257838 102258123 AluJr SINE - chr7:102258185-102258594 chr7 102258185 102258594 ORSL DNA + chr7:102258224-102258528 chr7 102258224 102258528 AluSx1 SINE - chr7:102258666-102259605 chr7 102258666 102259605 L1MB2 LINE + chr7:102258683-102258991 chr7 102258683 102258991 AluJr SINE + chr7:102258994-102259305 chr7 102258994 102259305 AluSq2 SINE + chr7:102259605-102259899 chr7 102259605 102259899 AluSx SINE + chr7:102259909-102260034 chr7 102259909 102260034 FLAM_C SINE + chr7:102260037-102260343 chr7 102260037 102260343 AluSz SINE + chr7:102260387-102260720 chr7 102260387 102260720 ORSL-2b DNA - chr7:102261166-102261459 chr7 102261166 102261459 AluSg4 SINE + chr7:102261608-102261919 chr7 102261608 102261919 AluJr SINE + chr7:102261919-102262096 chr7 102261919 102262096 MIRb SINE + chr7:102262235-102262529 chr7 102262235 102262529 AluSz SINE - chr7:102262529-102262665 chr7 102262529 102262665 AluSz SINE - chr7:102262884-102262960 chr7 102262884 102262960 (GACA)n Simple_repeat + chr7:102262970-102263262 chr7 102262970 102263262 AluSq2 SINE + chr7:102263284-102263451 chr7 102263284 102263451 AluSz6 SINE + chr7:102263816-102264116 chr7 102263816 102264116 AluSx1 SINE - chr7:102264120-102264150 chr7 102264120 102264150 (TTG)n Simple_repeat + chr7:102264154-102264349 chr7 102264154 102264349 AluSz6 SINE + chr7:102264357-102264488 chr7 102264357 102264488 AluJr4 SINE - chr7:102264689-102264862 chr7 102264689 102264862 L2d LINE - chr7:102265500-102265805 chr7 102265500 102265805 AluJr SINE - chr7:102265805-102266874 chr7 102265805 102266874 L1ME3 LINE - chr7:102265995-102266281 chr7 102265995 102266281 AluJo SINE - chr7:102266523-102266793 chr7 102266523 102266793 AluSx1 SINE - chr7:102267123-102267648 chr7 102267123 102267648 L2b LINE + chr7:102267164-102267497 chr7 102267164 102267497 AluSz SINE - chr7:102267351-102267377 chr7 102267351 102267377 (TTAT)n Simple_repeat + chr7:102268522-102268812 chr7 102268522 102268812 AluSz SINE - chr7:102269038-102269408 chr7 102269038 102269408 AluJo SINE - chr7:102269428-102269733 chr7 102269428 102269733 AluSx1 SINE - chr7:102270779-102271177 chr7 102270779 102271177 AluJr SINE - chr7:102270793-102270877 chr7 102270793 102270877 (TC)n Simple_repeat + chr7:102271377-102271440 chr7 102271377 102271440 GA-rich Low_complexity + chr7:102271908-102271973 chr7 102271908 102271973 (GAGT)n Simple_repeat + chr7:102271986-102275760 chr7 102271986 102275760 MIR3 SINE - chr7:102272025-102272321 chr7 102272025 102272321 AluSg SINE - chr7:102272321-102272366 chr7 102272321 102272366 MIR3 SINE - chr7:102272907-102273216 chr7 102272907 102273216 AluSx1 SINE + chr7:102273574-102273900 chr7 102273574 102273900 AluSz SINE + chr7:102274047-102274339 chr7 102274047 102274339 AluJr SINE + chr7:102274357-102274516 chr7 102274357 102274516 FRAM SINE + chr7:102274592-102274996 chr7 102274592 102274996 LTR33 LTR + chr7:102275072-102275688 chr7 102275072 102275688 AluJr SINE - chr7:102275225-102275527 chr7 102275225 102275527 AluSx SINE - chr7:102276230-102276375 chr7 102276230 102276375 L2d LINE + chr7:102276375-102276657 chr7 102276375 102276657 AluJr SINE + chr7:102276660-102276828 chr7 102276660 102276828 FRAM SINE + chr7:102277051-102277203 chr7 102277051 102277203 AluJb SINE - chr7:102277217-102277348 chr7 102277217 102277348 MIRc SINE - chr7:104623877-104623939 chr7 104623877 104623939 MIRb SINE - chr7:104627418-104627442 chr7 104627418 104627442 (T)n Simple_repeat + chr7:104628933-104629035 chr7 104628933 104629035 MER58D DNA - chr7:104629035-104629058 chr7 104629035 104629058 (CAAA)n Simple_repeat + chr7:104630544-104630760 chr7 104630544 104630760 LSU-rRNA_Hsa rRNA + chr7:104632584-104632706 chr7 104632584 104632706 AluYj4 SINE + chr7:104633458-104633614 chr7 104633458 104633614 AluSq SINE - chr7:104636028-104636124 chr7 104636028 104636124 L1MA4 LINE + chr7:104636224-104636352 chr7 104636224 104636352 MER1B DNA + chr7:104641782-104641866 chr7 104641782 104641866 LSU-rRNA_Hsa rRNA - chr7:104642531-104642573 chr7 104642531 104642573 (AATTTTG)n Simple_repeat + chr7:104643347-104643391 chr7 104643347 104643391 (AGAATA)n Simple_repeat + chr7:104643735-104644028 chr7 104643735 104644028 AluSz SINE - chr7:104644877-104645006 chr7 104644877 104645006 L2c LINE - chr7:104647372-104647544 chr7 104647372 104647544 AluSz6 SINE - chr7:104652296-104652319 chr7 104652296 104652319 (A)n Simple_repeat + chr7:104652322-104652589 chr7 104652322 104652589 AluSx3 SINE + chr7:105518612-105518647 chr7 105518612 105518647 (TTCC)n Simple_repeat + chr7:105526919-105526983 chr7 105526919 105526983 MIRb SINE - chr7:105529257-105529390 chr7 105529257 105529390 MER94 DNA + chr7:105531693-105531822 chr7 105531693 105531822 LTR103_Mam LTR - chr7:105532065-105532115 chr7 105532065 105532115 L2b LINE - chr7:105535391-105535429 chr7 105535391 105535429 MLT1O LTR + chr7:105543062-105543181 chr7 105543062 105543181 AluJo SINE + chr7:105543182-105543208 chr7 105543182 105543208 A-rich Low_complexity + chr7:105546581-105546621 chr7 105546581 105546621 AluY SINE - chr7:105548967-105548984 chr7 105548967 105548984 (TG)n Simple_repeat + chr7:111984828-111985029 chr7 111984828 111985029 L1MC5a LINE - chr7:11209170-11209210 chr7 11209170 11209210 (AATTTCT)n Simple_repeat + chr7:116592679-116592706 chr7 116592679 116592706 (CAAAA)n Simple_repeat + chr7:117832974-117833110 chr7 117832974 117833110 Tigger16a DNA - chr7:117833155-117833368 chr7 117833155 117833368 MER58A DNA - chr7:117834604-117834691 chr7 117834604 117834691 X32_DNA DNA - chr7:117834871-117834942 chr7 117834871 117834942 MIRb SINE - chr7:117834931-117835046 chr7 117834931 117835046 MIRc SINE - chr7:117835636-117836410 chr7 117835636 117836410 L3 LINE - chr7:117836190-117836255 chr7 117836190 117836255 L2a LINE - chr7:117837811-117837855 chr7 117837811 117837855 MIR SINE + chr7:121711891-121711989 chr7 121711891 121711989 MIR3 SINE + chr7:121712185-121712272 chr7 121712185 121712272 MIRb SINE - chr7:121713613-121715758 chr7 121713613 121715758 L1M4 LINE - chr7:121713628-121714148 chr7 121713628 121714148 L1MB8 LINE - chr7:121714903-121715227 chr7 121714903 121715227 AluJr SINE - chr7:121786877-121786906 chr7 121786877 121786906 (CTGTAG)n Simple_repeat + chr7:121797531-121797564 chr7 121797531 121797564 A-rich Low_complexity + chr7:123317528-123317547 chr7 123317528 123317547 (AC)n Simple_repeat + chr7:123390575-123390684 chr7 123390575 123390684 MIRc SINE + chr7:12553-12588 chr7 12553 12588 A-rich Low_complexity + chr7:125564676-125564824 chr7 125564676 125564824 L2-2_Mam LINE + chr7:125565091-125565436 chr7 125565091 125565436 L2c LINE - chr7:125567191-125567229 chr7 125567191 125567229 (AC)n Simple_repeat + chr7:125568840-125569165 chr7 125568840 125569165 L1PA7 LINE + chr7:125570803-125571162 chr7 125570803 125571162 THE1B LTR - chr7:125572485-125572513 chr7 125572485 125572513 (AC)n Simple_repeat + chr7:125572760-125573201 chr7 125572760 125573201 L1PA4 LINE - chr7:125573438-125573599 chr7 125573438 125573599 L2a LINE + chr7:125573790-125574320 chr7 125573790 125574320 MLT1H1 LTR + chr7:125576353-125576465 chr7 125576353 125576465 L2a LINE + chr7:125576745-125576928 chr7 125576745 125576928 MER3 DNA + chr7:125577305-125577878 chr7 125577305 125577878 Charlie15b DNA + chr7:125578101-125578169 chr7 125578101 125578169 MamGypLTR1b LTR - chr7:125579766-125580746 chr7 125579766 125580746 LTR5B LTR + chr7:125583282-125583496 chr7 125583282 125583496 MLT2A2 LTR + chr7:125583500-125583837 chr7 125583500 125583837 L1M2 LINE + chr7:125583848-125583960 chr7 125583848 125583960 (TA)n Simple_repeat + chr7:125583917-125583980 chr7 125583917 125583980 (AC)n Simple_repeat + chr7:125584488-125584598 chr7 125584488 125584598 L1M LINE + chr7:125584603-125584967 chr7 125584603 125584967 THE1B LTR - chr7:125585026-125585078 chr7 125585026 125585078 AluSx4 SINE + chr7:125585112-125585138 chr7 125585112 125585138 (TTTAT)n Simple_repeat + chr7:125585641-125585933 chr7 125585641 125585933 AluY SINE + chr7:125586807-125586835 chr7 125586807 125586835 (TTTG)n Simple_repeat + chr7:125586882-125587576 chr7 125586882 125587576 MER50 LTR - chr7:125587951-125588259 chr7 125587951 125588259 AluY SINE + chr7:125588259-125588624 chr7 125588259 125588624 GA-rich Low_complexity + chr7:125589039-125589218 chr7 125589039 125589218 (ATAT)n Simple_repeat + chr7:125589523-125589683 chr7 125589523 125589683 MIR3 SINE + chr7:125591675-125592082 chr7 125591675 125592082 MSTA LTR + chr7:125592335-125592471 chr7 125592335 125592471 MIRb SINE - chr7:125593525-125593686 chr7 125593525 125593686 AluSc SINE + chr7:125593736-125594036 chr7 125593736 125594036 AluYk3 SINE - chr7:125596564-125596976 chr7 125596564 125596976 MSTA LTR + chr7:125597109-125597169 chr7 125597109 125597169 MLT1H1 LTR - chr7:125597847-125597881 chr7 125597847 125597881 A-rich Low_complexity + chr7:125598152-125598197 chr7 125598152 125598197 (TA)n Simple_repeat + chr7:125598594-125598709 chr7 125598594 125598709 A-rich Low_complexity + chr7:125600140-125600183 chr7 125600140 125600183 (AATAAT)n Simple_repeat + chr7:125602967-125603277 chr7 125602967 125603277 AluSp SINE + chr7:125604077-125604480 chr7 125604077 125604480 L1MC5 LINE - chr7:125606258-125606303 chr7 125606258 125606303 (ATACTTT)n Simple_repeat + chr7:125607682-125607737 chr7 125607682 125607737 (TTTTATA)n Simple_repeat + chr7:125608192-125608499 chr7 125608192 125608499 AluSx1 SINE - chr7:125610268-125610286 chr7 125610268 125610286 (AT)n Simple_repeat + chr7:125611497-125611928 chr7 125611497 125611928 L1ME2 LINE + chr7:125611975-125612342 chr7 125611975 125612342 L1ME2 LINE + chr7:125614493-125614524 chr7 125614493 125614524 (GA)n Simple_repeat + chr7:125614538-125614807 chr7 125614538 125614807 AluJr SINE - chr7:125617258-125617284 chr7 125617258 125617284 (TGATG)n Simple_repeat + chr7:125618210-125618603 chr7 125618210 125618603 Charlie8 DNA - chr7:125618666-125618692 chr7 125618666 125618692 (CA)n Simple_repeat + chr7:125618837-125619028 chr7 125618837 125619028 L2 LINE - chr7:125620169-125620475 chr7 125620169 125620475 AluSz SINE - chr7:125625897-125626076 chr7 125625897 125626076 L2a LINE - chr7:125626770-125626876 chr7 125626770 125626876 L4_A_Mam LINE + chr7:125627038-125627413 chr7 125627038 125627413 L4_A_Mam LINE - chr7:125627953-125628047 chr7 125627953 125628047 MIRb SINE + chr7:125629789-125630086 chr7 125629789 125630086 AluSx SINE - chr7:125630156-125630246 chr7 125630156 125630246 L2d LINE + chr7:125631141-125631469 chr7 125631141 125631469 AluSx3 SINE - chr7:125633745-125634050 chr7 125633745 125634050 AluY SINE - chr7:125634228-125634291 chr7 125634228 125634291 (CTTC)n Simple_repeat + chr7:125634298-125634333 chr7 125634298 125634333 (CTTT)n Simple_repeat + chr7:125634743-125634986 chr7 125634743 125634986 L1PA6 LINE + chr7:125634986-125635231 chr7 125634986 125635231 L1MA8 LINE - chr7:125639265-125639314 chr7 125639265 125639314 (TATT)n Simple_repeat + chr7:125639314-125639466 chr7 125639314 125639466 AluYk3 SINE - chr7:125640354-125640403 chr7 125640354 125640403 (AC)n Simple_repeat + chr7:125640930-125641020 chr7 125640930 125641020 L1MC LINE + chr7:125641160-125641207 chr7 125641160 125641207 A-rich Low_complexity + chr7:125641161-125641205 chr7 125641161 125641205 GA-rich Low_complexity + chr7:125641325-125641360 chr7 125641325 125641360 (AAACA)n Simple_repeat + chr7:125642007-125642120 chr7 125642007 125642120 (AGAT)n Simple_repeat + chr7:125642855-125642987 chr7 125642855 125642987 (TTCTT)n Simple_repeat + chr7:125644029-125644366 chr7 125644029 125644366 LTR33 LTR - chr7:125647197-125647416 chr7 125647197 125647416 MER20 DNA - chr7:125648371-125648405 chr7 125648371 125648405 (CTTTT)n Simple_repeat + chr7:125650826-125651056 chr7 125650826 125651056 L1MC4a LINE - chr7:125651066-125651393 chr7 125651066 125651393 LTR33 LTR - chr7:125652426-125652459 chr7 125652426 125652459 (TTGTTT)n Simple_repeat + chr7:125653553-125653753 chr7 125653553 125653753 L2c LINE + chr7:125653845-125653919 chr7 125653845 125653919 L2 LINE + chr7:125654688-125654833 chr7 125654688 125654833 L1MC LINE - chr7:125657713-125657818 chr7 125657713 125657818 MLT1K LTR + chr7:125657854-125657915 chr7 125657854 125657915 (TTTTAG)n Simple_repeat + chr7:125658035-125658260 chr7 125658035 125658260 LTR33 LTR - chr7:125659318-125659386 chr7 125659318 125659386 Charlie8 DNA + chr7:125660612-125660858 chr7 125660612 125660858 MIR SINE - chr7:125661769-125661800 chr7 125661769 125661800 (AC)n Simple_repeat + chr7:125664860-125664943 chr7 125664860 125664943 MIR3 SINE - chr7:125668140-125668171 chr7 125668140 125668171 (AAT)n Simple_repeat + chr7:125669830-125669902 chr7 125669830 125669902 (TA)n Simple_repeat + chr7:125671359-125671397 chr7 125671359 125671397 A-rich Low_complexity + chr7:125672020-125672145 chr7 125672020 125672145 FLAM_C SINE + chr7:125672490-125672514 chr7 125672490 125672514 (ATC)n Simple_repeat + chr7:125673866-125674058 chr7 125673866 125674058 L1P3 LINE - chr7:125674057-125674421 chr7 125674057 125674421 L1P3 LINE + chr7:125677248-125677281 chr7 125677248 125677281 A-rich Low_complexity + chr7:125678390-125678745 chr7 125678390 125678745 L1ME3Cz LINE - chr7:125682969-125683008 chr7 125682969 125683008 (TA)n Simple_repeat + chr7:125683053-125683085 chr7 125683053 125683085 A-rich Low_complexity + chr7:125686130-125686210 chr7 125686130 125686210 MADE1 DNA + chr7:125690044-125690267 chr7 125690044 125690267 AluJb SINE - chr7:125696823-125696877 chr7 125696823 125696877 (AAAT)n Simple_repeat + chr7:125699067-125699130 chr7 125699067 125699130 THE1D-int LTR - chr7:125701525-125701652 chr7 125701525 125701652 AluJr SINE + chr7:125701653-125701728 chr7 125701653 125701728 A-rich Low_complexity + chr7:125704665-125704697 chr7 125704665 125704697 (CA)n Simple_repeat + chr7:125705440-125705493 chr7 125705440 125705493 (ATTTTT)n Simple_repeat + chr7:125705499-125705727 chr7 125705499 125705727 L1MB2 LINE - chr7:125705726-125705786 chr7 125705726 125705786 L1MB2 LINE + chr7:125705899-125706109 chr7 125705899 125706109 THE1C LTR - chr7:125707992-125708033 chr7 125707992 125708033 A-rich Low_complexity + chr7:125712471-125712499 chr7 125712471 125712499 (TG)n Simple_repeat + chr7:125713328-125713423 chr7 125713328 125713423 L1ME1 LINE - chr7:125717856-125717909 chr7 125717856 125717909 (TA)n Simple_repeat + chr7:125719018-125719112 chr7 125719018 125719112 MER2B DNA - chr7:125719134-125719530 chr7 125719134 125719530 LTR52 LTR - chr7:125728536-125728571 chr7 125728536 125728571 (GT)n Simple_repeat + chr7:125735808-125735846 chr7 125735808 125735846 (AATACTT)n Simple_repeat + chr7:125738542-125738573 chr7 125738542 125738573 (TATG)n Simple_repeat + chr7:125744571-125744600 chr7 125744571 125744600 (TG)n Simple_repeat + chr7:125750588-125750613 chr7 125750588 125750613 (AG)n Simple_repeat + chr7:125776945-125776977 chr7 125776945 125776977 L2a LINE + chr7:125782056-125782080 chr7 125782056 125782080 (AAAG)n Simple_repeat + chr7:125792804-125792824 chr7 125792804 125792824 (CT)n Simple_repeat + chr7:125810828-125810859 chr7 125810828 125810859 (AATA)n Simple_repeat + chr7:125830630-125830657 chr7 125830630 125830657 (TG)n Simple_repeat + chr7:125836395-125836430 chr7 125836395 125836430 (AACTA)n Simple_repeat + chr7:125850565-125850601 chr7 125850565 125850601 A-rich Low_complexity + chr7:127220480-127220504 chr7 127220480 127220504 (CA)n Simple_repeat + chr7:128204287-128204447 chr7 128204287 128204447 MIR SINE + chr7:128266995-128267022 chr7 128266995 128267022 (ATTGT)n Simple_repeat + chr7:128289005-128289109 chr7 128289005 128289109 MER8 DNA + chr7:128296320-128296356 chr7 128296320 128296356 (CAGCACC)n Simple_repeat + chr7:12916308-12916507 chr7 12916308 12916507 7SK RNA + chr7:129416177-129416231 chr7 129416177 129416231 MIR1_Amn SINE + chr7:130688764-130688820 chr7 130688764 130688820 Alu SINE - chr7:130720478-130720531 chr7 130720478 130720531 L2c LINE - chr7:135360670-135360960 chr7 135360670 135360960 AluSz6 SINE - chr7:135361015-135361157 chr7 135361015 135361157 MIRb SINE + chr7:135362145-135362174 chr7 135362145 135362174 A-rich Low_complexity + chr7:13690592-13690611 chr7 13690592 13690611 (TTC)n Simple_repeat + chr7:138708066-138708288 chr7 138708066 138708288 MER102c DNA + chr7:138709159-138709227 chr7 138709159 138709227 L4_A_Mam LINE - chr7:138709729-138709771 chr7 138709729 138709771 GA-rich Low_complexity + chr7:138709778-138710388 chr7 138709778 138710388 L4_B_Mam LINE - chr7:139135358-139135408 chr7 139135358 139135408 (TTA)n Simple_repeat + chr7:139135566-139135826 chr7 139135566 139135826 MLT1G1 LTR + chr7:139136396-139136509 chr7 139136396 139136509 MIRb SINE + chr7:139137059-139137210 chr7 139137059 139137210 L1PA7 LINE + chr7:140127552-140127688 chr7 140127552 140127688 FLAM_C SINE - chr7:141355737-141355795 chr7 141355737 141355795 MIR SINE - chr7:141355795-141356005 chr7 141355795 141356005 Tigger4a DNA + chr7:143076992-143077103 chr7 143076992 143077103 MIR3 SINE + chr7:143077325-143077345 chr7 143077325 143077345 (A)n Simple_repeat + chr7:143189345-143189359 chr7 143189345 143189359 A-rich Low_complexity + chr7:143205642-143205655 chr7 143205642 143205655 (AT)n Simple_repeat + chr7:143991816-143991850 chr7 143991816 143991850 (GTT)n Simple_repeat + chr7:143992198-143992311 chr7 143992198 143992311 (CTCCTC)n Simple_repeat + chr7:143992420-143992447 chr7 143992420 143992447 (TG)n Simple_repeat + chr7:143997707-143998075 chr7 143997707 143998075 THE1D LTR + chr7:143998638-143998669 chr7 143998638 143998669 GA-rich Low_complexity + chr7:143999831-143999967 chr7 143999831 143999967 MIR SINE - chr7:144000341-144000357 chr7 144000341 144000357 (AC)n Simple_repeat + chr7:144000357-144000403 chr7 144000357 144000403 (TC)n Simple_repeat + chr7:144000403-144000434 chr7 144000403 144000434 (AC)n Simple_repeat + chr7:144000442-144000669 chr7 144000442 144000669 MIR SINE - chr7:144001156-144001253 chr7 144001156 144001253 L2d LINE + chr7:144001727-144001922 chr7 144001727 144001922 MIR SINE - chr7:144001908-144002036 chr7 144001908 144002036 L2a LINE + chr7:144002602-144002763 chr7 144002602 144002763 MER5A1 DNA - chr7:144003108-144003130 chr7 144003108 144003130 (G)n Simple_repeat + chr7:144003130-144003156 chr7 144003130 144003156 (AAGAA)n Simple_repeat + chr7:144004188-144004548 chr7 144004188 144004548 MSTD LTR - chr7:144004650-144004794 chr7 144004650 144004794 MIR3 SINE + chr7:144005164-144005399 chr7 144005164 144005399 MIR SINE - chr7:144005574-144006252 chr7 144005574 144006252 L1ME3G LINE + chr7:144006770-144007123 chr7 144006770 144007123 MLT1J2 LTR - chr7:144007336-144007371 chr7 144007336 144007371 (CATTCT)n Simple_repeat + chr7:144010018-144010208 chr7 144010018 144010208 MIRb SINE - chr7:144010350-144010400 chr7 144010350 144010400 L2a LINE - chr7:144010482-144010516 chr7 144010482 144010516 (T)n Simple_repeat + chr7:144010826-144010910 chr7 144010826 144010910 Charlie30b DNA + chr7:144011057-144011374 chr7 144011057 144011374 AluJr SINE + chr7:144011407-144011727 chr7 144011407 144011727 AluJr SINE - chr7:144011878-144011963 chr7 144011878 144011963 Charlie30b DNA - chr7:144012017-144012217 chr7 144012017 144012217 MER30 DNA + chr7:144012460-144012501 chr7 144012460 144012501 (ATTC)n Simple_repeat + chr7:144012818-144013115 chr7 144012818 144013115 AluJb SINE + chr7:144013420-144013863 chr7 144013420 144013863 L1PA13 LINE - chr7:144017519-144017552 chr7 144017519 144017552 (CA)n Simple_repeat + chr7:144017552-144017771 chr7 144017552 144017771 MIR SINE - chr7:144017896-144017932 chr7 144017896 144017932 (AAAC)n Simple_repeat + chr7:144018118-144018281 chr7 144018118 144018281 AluJb SINE + chr7:144018659-144018758 chr7 144018659 144018758 MIRc SINE + chr7:144019502-144019714 chr7 144019502 144019714 MIR SINE - chr7:144019896-144020217 chr7 144019896 144020217 AluSx SINE - chr7:144020983-144021145 chr7 144020983 144021145 MIR3 SINE + chr7:144021311-144021608 chr7 144021311 144021608 AluSz6 SINE + chr7:144021820-144022061 chr7 144021820 144022061 MIRb SINE - chr7:144022125-144022348 chr7 144022125 144022348 L1MA8 LINE + chr7:144022365-144022673 chr7 144022365 144022673 AluSq2 SINE - chr7:144022861-144023615 chr7 144022861 144023615 L1ME3G LINE + chr7:144023096-144023396 chr7 144023096 144023396 AluJo SINE - chr7:144023980-144024249 chr7 144023980 144024249 MLT1J1 LTR - chr7:144024435-144024513 chr7 144024435 144024513 MamRep488 DNA + chr7:144025251-144025555 chr7 144025251 144025555 AluSz SINE + chr7:144026113-144026383 chr7 144026113 144026383 L1ME4b LINE + chr7:144026431-144026578 chr7 144026431 144026578 Arthur1A DNA - chr7:144026756-144027689 chr7 144026756 144027689 L1ME4b LINE + chr7:144026853-144027131 chr7 144026853 144027131 AluJb SINE + chr7:144027966-144028085 chr7 144027966 144028085 FRAM SINE - chr7:144028382-144028582 chr7 144028382 144028582 AluJr SINE + chr7:144029074-144029120 chr7 144029074 144029120 (GT)n Simple_repeat + chr7:144029184-144029263 chr7 144029184 144029263 L2d LINE + chr7:144029775-144030071 chr7 144029775 144030071 AluSx1 SINE + chr7:144030071-144030205 chr7 144030071 144030205 FLAM_C SINE - chr7:144030277-144030608 chr7 144030277 144030608 MER2 DNA + chr7:144032096-144034445 chr7 144032096 144034445 THE1A LTR - chr7:144034573-144034937 chr7 144034573 144034937 MLT1A LTR + chr7:144035074-144035593 chr7 144035074 144035593 L2c LINE - chr7:144036263-144038421 chr7 144036263 144038421 L2c LINE - chr7:144037218-144037344 chr7 144037218 144037344 FRAM SINE - chr7:144038459-144038765 chr7 144038459 144038765 AluJb SINE + chr7:144038789-144044093 chr7 144038789 144044093 L2c LINE + chr7:144039082-144040825 chr7 144039082 144040825 MER4B LTR + chr7:144039309-144040266 chr7 144039309 144040266 HERVH-int LTR + chr7:144040396-144040414 chr7 144040396 144040414 (A)n Simple_repeat + chr7:144040972-144041190 chr7 144040972 144041190 Tigger4a DNA - chr7:144041377-144041584 chr7 144041377 144041584 Charlie7a DNA + chr7:144041827-144042114 chr7 144041827 144042114 AluJr SINE + chr7:144042114-144042172 chr7 144042114 144042172 (ATAG)n Simple_repeat + chr7:144042890-144043178 chr7 144042890 144043178 AluY SINE + chr7:144043186-144043493 chr7 144043186 144043493 AluJb SINE + chr7:144044122-144044433 chr7 144044122 144044433 AluSx SINE - chr7:144044636-144044694 chr7 144044636 144044694 L1M3b LINE + chr7:144045190-144045444 chr7 144045190 144045444 AluSg7 SINE + chr7:144045499-144045544 chr7 144045499 144045544 7SK RNA - chr7:144046597-144047890 chr7 144046597 144047890 L2c LINE + chr7:144047081-144047353 chr7 144047081 144047353 AluY SINE - chr7:144047400-144047698 chr7 144047400 144047698 AluJr SINE + chr7:144047908-144047949 chr7 144047908 144047949 (GAAT)n Simple_repeat + chr7:144048082-144048371 chr7 144048082 144048371 AluSz SINE + chr7:144048477-144048770 chr7 144048477 144048770 AluSg SINE + chr7:144049279-144049565 chr7 144049279 144049565 MIRb SINE - chr7:144049975-144050007 chr7 144049975 144050007 (AG)n Simple_repeat + chr7:144050145-144050448 chr7 144050145 144050448 AluSx1 SINE - chr7:144051319-144051354 chr7 144051319 144051354 (AC)n Simple_repeat + chr7:144051462-144051576 chr7 144051462 144051576 GA-rich Low_complexity + chr7:144051633-144051919 chr7 144051633 144051919 AluSx SINE + chr7:144051919-144051979 chr7 144051919 144051979 (AAC)n Simple_repeat + chr7:148684228-148684340 chr7 148684228 148684340 HY1 scRNA - chr7:148880738-148880868 chr7 148880738 148880868 FLAM_C SINE - chr7:148881339-148881566 chr7 148881339 148881566 MIR SINE + chr7:148882713-148882806 chr7 148882713 148882806 L2d2 LINE + chr7:148885447-148885598 chr7 148885447 148885598 MER5B DNA - chr7:149112228-149112300 chr7 149112228 149112300 tRNA-Cys-TGY tRNA - chr7:149203081-149203111 chr7 149203081 149203111 (AAT)n Simple_repeat + chr7:149224026-149224057 chr7 149224026 149224057 (TG)n Simple_repeat + chr7:149244880-149244949 chr7 149244880 149244949 tRNA-Cys-TGY tRNA + chr7:149245145-149245645 chr7 149245145 149245645 LOR1a LTR + chr7:149253801-149253876 chr7 149253801 149253876 tRNA-Cys-TGY tRNA + chr7:149255132-149255207 chr7 149255132 149255207 tRNA-Cys-TGY tRNA + chr7:149255873-149256010 chr7 149255873 149256010 MIR SINE + chr7:149256455-149256500 chr7 149256455 149256500 (TCCCT)n Simple_repeat + chr7:149258298-149258359 chr7 149258298 149258359 MIRb SINE - chr7:149265735-149265809 chr7 149265735 149265809 tRNA-Cys-TGY tRNA + chr7:149267418-149267514 chr7 149267418 149267514 GA-rich Low_complexity + chr7:149278176-149278241 chr7 149278176 149278241 (AAAACC)n Simple_repeat + chr7:149279187-149279323 chr7 149279187 149279323 L1MA1 LINE + chr7:149281815-149281890 chr7 149281815 149281890 tRNA-Cys-TGY tRNA + chr7:149282147-149282198 chr7 149282147 149282198 L2d2 LINE + chr7:149286161-149286235 chr7 149286161 149286235 tRNA-Cys-TGY tRNA - chr7:149286498-149286537 chr7 149286498 149286537 (GCTGG)n Simple_repeat + chr7:149286538-149286636 chr7 149286538 149286636 MER5A DNA + chr7:149287031-149287088 chr7 149287031 149287088 tRNA-Cys-TGY tRNA - chr7:149288605-149288627 chr7 149288605 149288627 (CA)n Simple_repeat + chr7:149289331-149289381 chr7 149289331 149289381 MER20 DNA + chr7:149295045-149295117 chr7 149295045 149295117 tRNA-Cys-TGY tRNA + chr7:149296362-149296432 chr7 149296362 149296432 tRNA-Cys-TGY tRNA + chr7:149304500-149304646 chr7 149304500 149304646 L1ME4b LINE - chr7:149305801-149305852 chr7 149305801 149305852 L2d2 LINE + chr7:149312579-149312612 chr7 149312579 149312612 (CA)n Simple_repeat + chr7:149314059-149314142 chr7 149314059 149314142 MER58C DNA - chr7:149315089-149315134 chr7 149315089 149315134 MER20 DNA + chr7:149703822-149703840 chr7 149703822 149703840 (TGG)n Simple_repeat + chr7:149716001-149716019 chr7 149716001 149716019 (GT)n Simple_repeat + chr7:150104617-150104657 chr7 150104617 150104657 (CCCCGC)n Simple_repeat + chr7:150105726-150105785 chr7 150105726 150105785 L3 LINE - chr7:150106468-150106554 chr7 150106468 150106554 MIRc SINE - chr7:150107608-150107691 chr7 150107608 150107691 MIR3 SINE - chr7:150107735-150107906 chr7 150107735 150107906 Charlie4z DNA - chr7:151109750-151109789 chr7 151109750 151109789 MIRb SINE - chr7:154796009-154796310 chr7 154796009 154796310 AluSx3 SINE + chr7:154796667-154796801 chr7 154796667 154796801 Tigger4b DNA + chr7:17825778-17825807 chr7 17825778 17825807 (AC)n Simple_repeat + chr7:19997334-19997369 chr7 19997334 19997369 (TG)n Simple_repeat + chr7:19997370-19997399 chr7 19997370 19997399 GA-rich Low_complexity + chr7:20001420-20001435 chr7 20001420 20001435 (AATA)n Simple_repeat + chr7:20001848-20001871 chr7 20001848 20001871 (AATA)n Simple_repeat + chr7:20029671-20029688 chr7 20029671 20029688 (A)n Simple_repeat + chr7:20066867-20069945 chr7 20066867 20069945 L1MEd LINE - chr7:20067667-20067705 chr7 20067667 20067705 (GT)n Simple_repeat + chr7:20257694-20257730 chr7 20257694 20257730 (TTTTGTG)n Simple_repeat + chr7:20259415-20259472 chr7 20259415 20259472 L2c LINE + chr7:20260371-20260401 chr7 20260371 20260401 (T)n Simple_repeat + chr7:22896681-22896699 chr7 22896681 22896699 (T)n Simple_repeat + chr7:22896983-22897168 chr7 22896983 22897168 AluSp SINE - chr7:22897172-22897449 chr7 22897172 22897449 AluSz SINE - chr7:22897455-22897757 chr7 22897455 22897757 AluSp SINE - chr7:22897978-22898166 chr7 22897978 22898166 L1ME1 LINE + chr7:23145137-23145157 chr7 23145137 23145157 (A)n Simple_repeat + chr7:23531029-23531047 chr7 23531029 23531047 (A)n Simple_repeat + chr7:23540626-23540666 chr7 23540626 23540666 MER57B1 LTR - chr7:25158899-25159192 chr7 25158899 25159192 AluSq2 SINE - chr7:25159197-25159356 chr7 25159197 25159356 FRAM SINE - chr7:26227021-26227127 chr7 26227021 26227127 AluJr SINE - chr7:26227177-26227401 chr7 26227177 26227401 MER2 DNA + chr7:26228641-26228768 chr7 26228641 26228768 MLT1F1 LTR + chr7:2766007-2766156 chr7 2766007 2766156 MER5B DNA + chr7:29599320-29599337 chr7 29599320 29599337 (TG)n Simple_repeat + chr7:30407740-30407783 chr7 30407740 30407783 MADE1 DNA - chr7:30412408-30412428 chr7 30412408 30412428 (A)n Simple_repeat + chr7:35735191-35735378 chr7 35735191 35735378 MIRb SINE + chr7:35945314-35945360 chr7 35945314 35945360 Alu SINE - chr7:35974808-35974840 chr7 35974808 35974840 (AC)n Simple_repeat + chr7:35979635-35979667 chr7 35979635 35979667 (TC)n Simple_repeat + chr7:38399308-38399331 chr7 38399308 38399331 (TTTG)n Simple_repeat + chr7:39775018-39775050 chr7 39775018 39775050 (AAC)n Simple_repeat + chr7:39778921-39778970 chr7 39778921 39778970 (ATCT)n Simple_repeat + chr7:39779973-39779995 chr7 39779973 39779995 (TAT)n Simple_repeat + chr7:39780277-39780293 chr7 39780277 39780293 (TAT)n Simple_repeat + chr7:39782166-39782205 chr7 39782166 39782205 (GATTCAT)n Simple_repeat + chr7:39796084-39796130 chr7 39796084 39796130 (AC)n Simple_repeat + chr7:39805194-39805230 chr7 39805194 39805230 (A)n Simple_repeat + chr7:43667340-43674648 chr7 43667340 43674648 L1ME2 LINE - chr7:43669320-43669443 chr7 43669320 43669443 MIR3 SINE - chr7:43670835-43671124 chr7 43670835 43671124 AluSz6 SINE - chr7:43671338-43673350 chr7 43671338 43673350 Tigger1 DNA - chr7:43672313-43672447 chr7 43672313 43672447 AluJr4 SINE - chr7:43674848-43674927 chr7 43674848 43674927 L1MD LINE - chr7:43676018-43676107 chr7 43676018 43676107 MIRc SINE - chr7:43678811-43678842 chr7 43678811 43678842 GA-rich Low_complexity + chr7:44018522-44018553 chr7 44018522 44018553 (TGAG)n Simple_repeat + chr7:44056640-44056708 chr7 44056640 44056708 AluSz6 SINE - chr7:44056710-44056864 chr7 44056710 44056864 AluJr SINE - chr7:44057089-44057262 chr7 44057089 44057262 MER5A DNA + chr7:44057325-44057525 chr7 44057325 44057525 MER20 DNA - chr7:44614197-44614321 chr7 44614197 44614321 FLAM_A SINE - chr7:44614326-44614379 chr7 44614326 44614379 (TGTA)n Simple_repeat + chr7:44614657-44614802 chr7 44614657 44614802 MLT1D LTR - chr7:44617414-44617457 chr7 44617414 44617457 (ATAT)n Simple_repeat + chr7:44843108-44843126 chr7 44843108 44843126 (T)n Simple_repeat + chr7:45022915-45022980 chr7 45022915 45022980 MIRb SINE + chr7:45024235-45024341 chr7 45024235 45024341 MIRc SINE + chr7:45024749-45024933 chr7 45024749 45024933 MER3 DNA + chr7:45767818-45767856 chr7 45767818 45767856 (CTCCAT)n Simple_repeat + chr7:45778150-45778216 chr7 45778150 45778216 L2d2 LINE + chr7:45785836-45785964 chr7 45785836 45785964 Charlie4z DNA - chr7:45789995-45790052 chr7 45789995 45790052 tRNA-Lys-AAG tRNA + chr7:45791576-45791614 chr7 45791576 45791614 (TATG)n Simple_repeat + chr7:45796466-45796497 chr7 45796466 45796497 (ATA)n Simple_repeat + chr7:45803916-45803941 chr7 45803916 45803941 (A)n Simple_repeat + chr7:45804845-45805035 chr7 45804845 45805035 MER3 DNA + chr7:45805777-45805816 chr7 45805777 45805816 A-rich Low_complexity + chr7:45806487-45807497 chr7 45806487 45807497 AluJb SINE - chr7:45806772-45807121 chr7 45806772 45807121 AluJb SINE + chr7:45807556-45807665 chr7 45807556 45807665 AluSg4 SINE - chr7:45814900-45814951 chr7 45814900 45814951 AluSq2 SINE + chr7:47995103-47995427 chr7 47995103 47995427 L1ME4a LINE - chr7:47996413-47996433 chr7 47996413 47996433 (ATG)n Simple_repeat + chr7:48002347-48002407 chr7 48002347 48002407 L1MB8 LINE + chr7:5016528-5016824 chr7 5016528 5016824 AluSp SINE - chr7:5016842-5017019 chr7 5016842 5017019 AluJr SINE + chr7:5017129-5017427 chr7 5017129 5017427 AluSg SINE - chr7:5017581-5017634 chr7 5017581 5017634 MER91A DNA + chr7:5017676-5017988 chr7 5017676 5017988 AluSz SINE - chr7:5018154-5018618 chr7 5018154 5018618 L1MEd LINE - chr7:5018623-5018914 chr7 5018623 5018914 AluSz SINE - chr7:5018920-5019124 chr7 5018920 5019124 AluSp SINE - chr7:5019283-5019677 chr7 5019283 5019677 L1ME3B LINE - chr7:5019827-5019891 chr7 5019827 5019891 L1MC2 LINE - chr7:5020934-5021242 chr7 5020934 5021242 AluY SINE + chr7:5022576-5022658 chr7 5022576 5022658 L1ME3Cz LINE + chr7:5023134-5023157 chr7 5023134 5023157 (TTGT)n Simple_repeat + chr7:5519236-5519277 chr7 5519236 5519277 (CCTGCGG)n Simple_repeat + chr7:55521733-55521895 chr7 55521733 55521895 L1MA5 LINE - chr7:55528304-55528377 chr7 55528304 55528377 MADE1 DNA + chr7:55529408-55529493 chr7 55529408 55529493 L1M2 LINE - chr7:55530717-55530893 chr7 55530717 55530893 L1M2 LINE - chr7:55533367-55533514 chr7 55533367 55533514 MIRb SINE - chr7:55533603-55533960 chr7 55533603 55533960 MLT1A0 LTR + chr7:55536722-55536824 chr7 55536722 55536824 L1ME2z LINE + chr7:5565049-5565253 chr7 5565049 5565253 L2c LINE + chr7:5565255-5565318 chr7 5565255 5565318 (ATGA)n Simple_repeat + chr7:5565318-5565383 chr7 5565318 5565383 LFSINE_Vert SINE + chr7:5565345-5565458 chr7 5565345 5565458 L2c LINE + chr7:5864160-5864177 chr7 5864160 5864177 (T)n Simple_repeat + chr7:63975418-63975468 chr7 63975418 63975468 (CA)n Simple_repeat + chr7:63979921-63980058 chr7 63979921 63980058 L1PB LINE - chr7:63980058-63980156 chr7 63980058 63980156 L1MA7 LINE + chr7:64035614-64035643 chr7 64035614 64035643 (T)n Simple_repeat + chr7:64036019-64036326 chr7 64036019 64036326 AluY SINE + chr7:64037027-64037148 chr7 64037027 64037148 AluSp SINE + chr7:64038522-64038696 chr7 64038522 64038696 AluSp SINE + chr7:64040900-64040925 chr7 64040900 64040925 (T)n Simple_repeat + chr7:64041089-64041389 chr7 64041089 64041389 AluYm1 SINE + chr7:64041461-64041759 chr7 64041461 64041759 AluSx1 SINE + chr7:64042129-64042411 chr7 64042129 64042411 MER92B LTR - chr7:64042410-64042675 chr7 64042410 64042675 LTR46 LTR - chr7:64049716-64050009 chr7 64049716 64050009 AluSx4 SINE + chr7:64053731-64054033 chr7 64053731 64054033 AluSx SINE + chr7:64054817-64054893 chr7 64054817 64054893 MER50B LTR + chr7:64054927-64054948 chr7 64054927 64054948 (TG)n Simple_repeat + chr7:64055819-64056084 chr7 64055819 64056084 AluSx SINE + chr7:64057922-64058054 chr7 64057922 64058054 AluSz SINE + chr7:64058057-64058305 chr7 64058057 64058305 AluSx SINE + chr7:64058307-64058530 chr7 64058307 64058530 (AT)n Simple_repeat + chr7:64060944-64061242 chr7 64060944 64061242 AluSx1 SINE - chr7:64065487-64065659 chr7 64065487 64065659 AluSc8 SINE - chr7:64066183-64066715 chr7 64066183 64066715 HERV1_LTRd LTR - chr7:64067669-64067990 chr7 64067669 64067990 AluSx4 SINE - chr7:64067990-64068148 chr7 64067990 64068148 BSR/Beta Satellite - chr7:64068444-64068857 chr7 64068444 64068857 BSR/Beta Satellite - chr7:64068914-64069147 chr7 64068914 64069147 MER50 LTR - chr7:64070251-64070562 chr7 64070251 64070562 AluSz SINE - chr7:64070861-64071164 chr7 64070861 64071164 AluSz6 SINE - chr7:64182108-64182130 chr7 64182108 64182130 (TAGTAT)n Simple_repeat + chr7:64182420-64182433 chr7 64182420 64182433 (TAGTAT)n Simple_repeat + chr7:64183671-64183689 chr7 64183671 64183689 (ATT)n Simple_repeat + chr7:64192922-64192948 chr7 64192922 64192948 (TTAT)n Simple_repeat + chr7:64203241-64203262 chr7 64203241 64203262 (ATTT)n Simple_repeat + chr7:64222171-64222198 chr7 64222171 64222198 (TTG)n Simple_repeat + chr7:64324752-64324778 chr7 64324752 64324778 (TG)n Simple_repeat + chr7:64324778-64324796 chr7 64324778 64324796 (TGCGTG)n Simple_repeat + chr7:64324828-64324862 chr7 64324828 64324862 (A)n Simple_repeat + chr7:64325168-64325201 chr7 64325168 64325201 U2 snRNA + chr7:64326485-64326545 chr7 64326485 64326545 (ATGG)n Simple_repeat + chr7:64327073-64327107 chr7 64327073 64327107 (CACC)n Simple_repeat + chr7:64335850-64335915 chr7 64335850 64335915 (TG)n Simple_repeat + chr7:64340882-64340914 chr7 64340882 64340914 (TGTG)n Simple_repeat + chr7:64343332-64343393 chr7 64343332 64343393 (GT)n Simple_repeat + chr7:64345640-64345707 chr7 64345640 64345707 MIRc SINE + chr7:64348585-64348602 chr7 64348585 64348602 (GCT)n Simple_repeat + chr7:64350567-64350600 chr7 64350567 64350600 (GT)n Simple_repeat + chr7:64354032-64354114 chr7 64354032 64354114 (CCTCC)n Simple_repeat + chr7:64362319-64362392 chr7 64362319 64362392 AluSz SINE + chr7:64390202-64390232 chr7 64390202 64390232 (TGGTTT)n Simple_repeat + chr7:64390233-64390540 chr7 64390233 64390540 AluSp SINE - chr7:64391087-64391120 chr7 64391087 64391120 (TTTATA)n Simple_repeat + chr7:64391125-64391290 chr7 64391125 64391290 L1MA2 LINE - chr7:64397800-64397834 chr7 64397800 64397834 (AGAA)n Simple_repeat + chr7:64404796-64404844 chr7 64404796 64404844 Alu SINE + chr7:64407130-64407165 chr7 64407130 64407165 (CA)n Simple_repeat + chr7:64431683-64431721 chr7 64431683 64431721 (AATA)n Simple_repeat + chr7:64491174-64491190 chr7 64491174 64491190 GA-rich Low_complexity + chr7:64499067-64499106 chr7 64499067 64499106 G-rich Low_complexity + chr7:64501391-64501418 chr7 64501391 64501418 (AAAT)n Simple_repeat + chr7:64501892-64501935 chr7 64501892 64501935 (AT)n Simple_repeat + chr7:64514570-64514596 chr7 64514570 64514596 (TG)n Simple_repeat + chr7:64518771-64518780 chr7 64518771 64518780 (ACATCAC)n Simple_repeat + chr7:64518780-64518810 chr7 64518780 64518810 (CA)n Simple_repeat + chr7:64520973-64521029 chr7 64520973 64521029 (GT)n Simple_repeat + chr7:64525084-64525159 chr7 64525084 64525159 MIRb SINE + chr7:64528122-64528238 chr7 64528122 64528238 BC200 scRNA - chr7:64529261-64529446 chr7 64529261 64529446 L1MB4 LINE - chr7:64532451-64532473 chr7 64532451 64532473 (T)n Simple_repeat + chr7:64534497-64534646 chr7 64534497 64534646 L1ME4a LINE - chr7:64537986-64538030 chr7 64537986 64538030 GA-rich Low_complexity + chr7:64542014-64542116 chr7 64542014 64542116 FRAM SINE + chr7:64543092-64543114 chr7 64543092 64543114 (TAGC)n Simple_repeat + chr7:64554112-64554153 chr7 64554112 64554153 (ATTA)n Simple_repeat + chr7:64560454-64560470 chr7 64560454 64560470 (TAA)n Simple_repeat + chr7:64563674-64563730 chr7 64563674 64563730 (TCTTCC)n Simple_repeat + chr7:64609425-64609463 chr7 64609425 64609463 (T)n Simple_repeat + chr7:64609834-64609852 chr7 64609834 64609852 (T)n Simple_repeat + chr7:64613530-64613561 chr7 64613530 64613561 (TATG)n Simple_repeat + chr7:64616931-64616967 chr7 64616931 64616967 (CATA)n Simple_repeat + chr7:64650735-64650745 chr7 64650735 64650745 (ATATC)n Simple_repeat + chr7:64651023-64651039 chr7 64651023 64651039 (ATATC)n Simple_repeat + chr7:64654633-64654702 chr7 64654633 64654702 L3 LINE + chr7:64656584-64656628 chr7 64656584 64656628 (AATA)n Simple_repeat + chr7:64657741-64657764 chr7 64657741 64657764 (AC)n Simple_repeat + chr7:64663306-64663395 chr7 64663306 64663395 L4_C_Mam LINE + chr7:64665865-64665916 chr7 64665865 64665916 (AAGATC)n Simple_repeat + chr7:64666934-64666956 chr7 64666934 64666956 (AAT)n Simple_repeat + chr7:64668929-64668952 chr7 64668929 64668952 (T)n Simple_repeat + chr7:64673712-64673756 chr7 64673712 64673756 (CATC)n Simple_repeat + chr7:64674775-64674826 chr7 64674775 64674826 L2a LINE - chr7:64677224-64677267 chr7 64677224 64677267 (CCTCC)n Simple_repeat + chr7:64681077-64681095 chr7 64681077 64681095 (AAAT)n Simple_repeat + chr7:64712107-64712131 chr7 64712107 64712131 (T)n Simple_repeat + chr7:64744259-64744333 chr7 64744259 64744333 L1PREC2 LINE - chr7:64744333-64744400 chr7 64744333 64744400 AluSx SINE - chr7:64751716-64751768 chr7 64751716 64751768 (TAT)n Simple_repeat + chr7:64761885-64761937 chr7 64761885 64761937 (CTT)n Simple_repeat + chr7:64784049-64784079 chr7 64784049 64784079 GA-rich Low_complexity + chr7:64792390-64792416 chr7 64792390 64792416 (AAAT)n Simple_repeat + chr7:64798856-64798883 chr7 64798856 64798883 (T)n Simple_repeat + chr7:64798883-64798907 chr7 64798883 64798907 (TTTAT)n Simple_repeat + chr7:65168044-65168067 chr7 65168044 65168067 (AC)n Simple_repeat + chr7:65216722-65217056 chr7 65216722 65217056 AluY SINE - chr7:65216903-65216930 chr7 65216903 65216930 (TTTA)n Simple_repeat + chr7:65217083-65217118 chr7 65217083 65217118 (TTTTAG)n Simple_repeat + chr7:65217191-65217269 chr7 65217191 65217269 AluSx SINE + chr7:65218588-65218738 chr7 65218588 65218738 L1ME3B LINE - chr7:65218781-65218939 chr7 65218781 65218939 L1MC4 LINE - chr7:65218956-65219088 chr7 65218956 65219088 FLAM_C SINE - chr7:65219221-65219296 chr7 65219221 65219296 MIRb SINE + chr7:65221591-65221894 chr7 65221591 65221894 AluSq2 SINE + chr7:65222259-65222375 chr7 65222259 65222375 BC200 scRNA - chr7:65223393-65223576 chr7 65223393 65223576 L1MB4 LINE - chr7:65223631-65223924 chr7 65223631 65223924 AluSz6 SINE - chr7:65224309-65224605 chr7 65224309 65224605 AluJo SINE - chr7:65225968-65226254 chr7 65225968 65226254 AluSq2 SINE - chr7:65226263-65226566 chr7 65226263 65226566 AluSc8 SINE - chr7:65227060-65227370 chr7 65227060 65227370 AluY SINE - chr7:65228615-65228764 chr7 65228615 65228764 L1ME4a LINE - chr7:6536372-6536392 chr7 6536372 6536392 (A)n Simple_repeat + chr7:65881751-65881814 chr7 65881751 65881814 Alu SINE - chr7:65881904-65881926 chr7 65881904 65881926 (TCCA)n Simple_repeat + chr7:65892095-65892163 chr7 65892095 65892163 MLT1M LTR + chr7:65896038-65896189 chr7 65896038 65896189 AluY SINE + chr7:65896135-65896173 chr7 65896135 65896173 (AAAGA)n Simple_repeat + chr7:65901183-65901213 chr7 65901183 65901213 (ATT)n Simple_repeat + chr7:65901237-65901277 chr7 65901237 65901277 A-rich Low_complexity + chr7:65902016-65902083 chr7 65902016 65902083 Charlie26a DNA + chr7:65903708-65903759 chr7 65903708 65903759 A-rich Low_complexity + chr7:65916872-65917032 chr7 65916872 65917032 MER5A DNA + chr7:65918076-65918125 chr7 65918076 65918125 MIR SINE - chr7:65918727-65918804 chr7 65918727 65918804 GA-rich Low_complexity + chr7:65919388-65919673 chr7 65919388 65919673 AluJr SINE + chr7:65921133-65921342 chr7 65921133 65921342 L1MD LINE + chr7:65921785-65921907 chr7 65921785 65921907 L1MD LINE + chr7:65921907-65922124 chr7 65921907 65922124 AluSx3 SINE + chr7:65923100-65923412 chr7 65923100 65923412 AluSz6 SINE + chr7:65923518-65923689 chr7 65923518 65923689 AluSz6 SINE + chr7:65923909-65923960 chr7 65923909 65923960 A-rich Low_complexity + chr7:65924097-65924309 chr7 65924097 65924309 AluJb SINE - chr7:65925151-65925247 chr7 65925151 65925247 MIRb SINE + chr7:65927291-65927451 chr7 65927291 65927451 FRAM SINE + chr7:65927505-65927630 chr7 65927505 65927630 L2c LINE + chr7:65927728-65927805 chr7 65927728 65927805 AluJb SINE - chr7:65929500-65929618 chr7 65929500 65929618 AluJr SINE + chr7:65929688-65929983 chr7 65929688 65929983 AluSg SINE + chr7:65932564-65932686 chr7 65932564 65932686 L2c LINE - chr7:65933215-65933253 chr7 65933215 65933253 (AATCT)n Simple_repeat + chr7:65937552-65937667 chr7 65937552 65937667 Tigger19b DNA - chr7:65940740-65941046 chr7 65940740 65941046 AluSg SINE + chr7:65941195-65941296 chr7 65941195 65941296 Tigger1 DNA + chr7:65941322-65941393 chr7 65941322 65941393 Eutr2B DNA - chr7:65941471-65941547 chr7 65941471 65941547 MER94 DNA + chr7:65941729-65941796 chr7 65941729 65941796 L2b LINE + chr7:65941935-65942109 chr7 65941935 65942109 MER5A DNA - chr7:65942223-65942454 chr7 65942223 65942454 MSTD LTR - chr7:65943562-65943576 chr7 65943562 65943576 A-rich Low_complexity + chr7:65943576-65943597 chr7 65943576 65943597 (AG)n Simple_repeat + chr7:65943599-65943632 chr7 65943599 65943632 (CAGGCC)n Simple_repeat + chr7:65943632-65943918 chr7 65943632 65943918 AluSq SINE + chr7:65944915-65945197 chr7 65944915 65945197 AluSx SINE + chr7:65945530-65945826 chr7 65945530 65945826 AluSx SINE - chr7:65946708-65947017 chr7 65946708 65947017 AluSg SINE + chr7:65948080-65948389 chr7 65948080 65948389 AluSq SINE + chr7:65949319-65949613 chr7 65949319 65949613 AluSp SINE + chr7:65952925-65953201 chr7 65952925 65953201 AluSz SINE + chr7:65953201-65953225 chr7 65953201 65953225 (TCAA)n Simple_repeat + chr7:65954672-65954706 chr7 65954672 65954706 (AT)n Simple_repeat + chr7:65955444-65955745 chr7 65955444 65955745 AluSz SINE + chr7:65956343-65956660 chr7 65956343 65956660 AluSz SINE + chr7:65957956-65958072 chr7 65957956 65958072 AluYd8 SINE - chr7:65958178-65958272 chr7 65958178 65958272 FRAM SINE - chr7:65958298-65958371 chr7 65958298 65958371 AluJr4 SINE - chr7:65959549-65959584 chr7 65959549 65959584 (TA)n Simple_repeat + chr7:65959590-65959682 chr7 65959590 65959682 AluJb SINE + chr7:65960037-65960206 chr7 65960037 65960206 AluJb SINE + chr7:65962669-65962826 chr7 65962669 65962826 AluJb SINE - chr7:65965076-65965103 chr7 65965076 65965103 (AAAT)n Simple_repeat + chr7:65966638-65966817 chr7 65966638 65966817 LTR91A LTR + chr7:65969827-65969864 chr7 65969827 65969864 (T)n Simple_repeat + chr7:65971281-65971324 chr7 65971281 65971324 (CCTCGGC)n Simple_repeat + chr7:65971316-65971345 chr7 65971316 65971345 (CCCCG)n Simple_repeat + chr7:65971730-65971863 chr7 65971730 65971863 AluSz SINE - chr7:65972175-65972307 chr7 65972175 65972307 FLAM_A SINE - chr7:65972451-65972582 chr7 65972451 65972582 AluJo SINE - chr7:65974602-65974745 chr7 65974602 65974745 FLAM_C SINE + chr7:65975661-65975797 chr7 65975661 65975797 FLAM_C SINE - chr7:65977387-65977522 chr7 65977387 65977522 L2a LINE - chr7:65977531-65977665 chr7 65977531 65977665 FLAM_C SINE + chr7:65979479-65979598 chr7 65979479 65979598 AluJo SINE + chr7:65982389-65982459 chr7 65982389 65982459 L3 LINE - chr7:65984137-65984250 chr7 65984137 65984250 AluJr4 SINE + chr7:65984946-65984972 chr7 65984946 65984972 (TTG)n Simple_repeat + chr7:65987763-65987824 chr7 65987763 65987824 MER5A1 DNA - chr7:65989946-65990064 chr7 65989946 65990064 MIRb SINE - chr7:65990551-65990628 chr7 65990551 65990628 MIRb SINE + chr7:65991047-65991198 chr7 65991047 65991198 MamGypLTR1d LTR - chr7:65992951-65992998 chr7 65992951 65992998 MIR1_Amn SINE + chr7:65994022-65994169 chr7 65994022 65994169 AluSg4 SINE - chr7:65994305-65994439 chr7 65994305 65994439 FLAM_C SINE + chr7:65995027-65995169 chr7 65995027 65995169 MIR SINE - chr7:65996300-65996365 chr7 65996300 65996365 CR1-3_Croc LINE + chr7:65996811-65996855 chr7 65996811 65996855 Alu SINE + chr7:65996878-65996931 chr7 65996878 65996931 MLT1D LTR - chr7:65997704-65997736 chr7 65997704 65997736 (CA)n Simple_repeat + chr7:66000556-66000631 chr7 66000556 66000631 MIRc SINE + chr7:66001844-66001929 chr7 66001844 66001929 MIR SINE - chr7:66003096-66003165 chr7 66003096 66003165 MIRb SINE - chr7:66003328-66003471 chr7 66003328 66003471 AluJb SINE + chr7:66005665-66005938 chr7 66005665 66005938 AluSx1 SINE + chr7:66005940-66006099 chr7 66005940 66006099 (GAAA)n Simple_repeat + chr7:66006138-66006257 chr7 66006138 66006257 MIRb SINE + chr7:66007053-66007342 chr7 66007053 66007342 AluJo SINE + chr7:66009218-66009511 chr7 66009218 66009511 AluJr SINE + chr7:66009849-66009886 chr7 66009849 66009886 (TTAA)n Simple_repeat + chr7:66010931-66011020 chr7 66010931 66011020 A-rich Low_complexity + chr7:66011468-66011596 chr7 66011468 66011596 SVA_A Retroposon + chr7:66012901-66013233 chr7 66012901 66013233 AluJo SINE + chr7:66013244-66013297 chr7 66013244 66013297 L1M5 LINE - chr7:66014272-66014360 chr7 66014272 66014360 FRAM SINE + chr7:66015461-66015585 chr7 66015461 66015585 AluJo SINE + chr7:66015591-66015681 chr7 66015591 66015681 5S rRNA - chr7:66016494-66016580 chr7 66016494 66016580 MIR3 SINE - chr7:66016800-66017014 chr7 66016800 66017014 AluJb SINE + chr7:66017817-66018103 chr7 66017817 66018103 AluJb SINE + chr7:66018227-66018290 chr7 66018227 66018290 AluYa5 SINE + chr7:66020061-66020538 chr7 66020061 66020538 MIRb SINE - chr7:66020079-66020395 chr7 66020079 66020395 AluSp SINE - chr7:66020544-66020849 chr7 66020544 66020849 AluSq SINE - chr7:66021039-66021163 chr7 66021039 66021163 AluJb SINE + chr7:66024075-66024379 chr7 66024075 66024379 MER61A LTR - chr7:66024690-66025001 chr7 66024690 66025001 AluY SINE + chr7:66025261-66025361 chr7 66025261 66025361 FLAM_C SINE + chr7:66025408-66025705 chr7 66025408 66025705 AluSq10 SINE + chr7:66025715-66025743 chr7 66025715 66025743 (AAAC)n Simple_repeat + chr7:66025847-66025988 chr7 66025847 66025988 L4_A_Mam LINE - chr7:66026316-66026606 chr7 66026316 66026606 AluSc8 SINE + chr7:66026781-66027088 chr7 66026781 66027088 AluSx SINE + chr7:66027125-66027235 chr7 66027125 66027235 AluJo SINE - chr7:66027323-66027465 chr7 66027323 66027465 AluSz SINE - chr7:66027466-66027755 chr7 66027466 66027755 AluSx1 SINE - chr7:66028235-66028541 chr7 66028235 66028541 AluSz SINE - chr7:66029987-66030300 chr7 66029987 66030300 AluSq2 SINE - chr7:66030424-66030599 chr7 66030424 66030599 FAM SINE - chr7:66030752-66031107 chr7 66030752 66031107 Tigger4b DNA + chr7:66031319-66031496 chr7 66031319 66031496 L2a LINE + chr7:66031534-66031954 chr7 66031534 66031954 LTR40b LTR + chr7:66032459-66032480 chr7 66032459 66032480 (T)n Simple_repeat + chr7:66033110-66033150 chr7 66033110 66033150 (TTGTT)n Simple_repeat + chr7:66033156-66033454 chr7 66033156 66033454 AluJb SINE - chr7:66033565-66033877 chr7 66033565 66033877 AluSz6 SINE - chr7:66033882-66033990 chr7 66033882 66033990 MSTB1 LTR + chr7:66034331-66034493 chr7 66034331 66034493 AluJb SINE + chr7:66034634-66034930 chr7 66034634 66034930 AluSp SINE - chr7:66035943-66036118 chr7 66035943 66036118 FRAM SINE - chr7:66036281-66036330 chr7 66036281 66036330 (TA)n Simple_repeat + chr7:66036367-66036529 chr7 66036367 66036529 MIR3 SINE + chr7:66036670-66036883 chr7 66036670 66036883 MIRb SINE - chr7:66037078-66037326 chr7 66037078 66037326 AluJb SINE - chr7:66039027-66039198 chr7 66039027 66039198 AluSz6 SINE - chr7:66039198-66039760 chr7 66039198 66039760 L2c LINE - chr7:66039846-66040160 chr7 66039846 66040160 AluJb SINE + chr7:66040180-66040340 chr7 66040180 66040340 MER5A DNA + chr7:66040878-66041192 chr7 66040878 66041192 AluSx SINE - chr7:66041386-66041444 chr7 66041386 66041444 MIRb SINE - chr7:66042031-66042101 chr7 66042031 66042101 GA-rich Low_complexity + chr7:66043439-66043775 chr7 66043439 66043775 MLT1A0 LTR - chr7:66043982-66044014 chr7 66043982 66044014 (AAACA)n Simple_repeat + chr7:66044435-66044587 chr7 66044435 66044587 AluSz6 SINE + chr7:66044587-66044613 chr7 66044587 66044613 (AAAT)n Simple_repeat + chr7:66045398-66045488 chr7 66045398 66045488 MIR SINE + chr7:66045585-66045719 chr7 66045585 66045719 MLT1E2 LTR + chr7:66046145-66046196 chr7 66046145 66046196 Alu SINE - chr7:66047066-66047184 chr7 66047066 66047184 AluJr SINE + chr7:66050492-66050566 chr7 66050492 66050566 L2a LINE - chr7:66051066-66051102 chr7 66051066 66051102 (TCAATG)n Simple_repeat + chr7:66052210-66052234 chr7 66052210 66052234 (AC)n Simple_repeat + chr7:66052278-66052425 chr7 66052278 66052425 Eutr2 DNA + chr7:66052438-66052550 chr7 66052438 66052550 AluSx1 SINE - chr7:66053448-66053549 chr7 66053448 66053549 Tigger1 DNA + chr7:66053575-66053646 chr7 66053575 66053646 Eutr2B DNA - chr7:66053733-66053798 chr7 66053733 66053798 MER94 DNA + chr7:66053980-66054055 chr7 66053980 66054055 L2b LINE + chr7:66054190-66054361 chr7 66054190 66054361 MER5A DNA - chr7:66054489-66054728 chr7 66054489 66054728 AluSq4 SINE - chr7:66055028-66055320 chr7 66055028 66055320 AluSg SINE - chr7:66055445-66055726 chr7 66055445 66055726 AluJr SINE + chr7:66056205-66056330 chr7 66056205 66056330 AluJr SINE + chr7:66120526-66120650 chr7 66120526 66120650 AluJr SINE - chr7:66125509-66125527 chr7 66125509 66125527 AluSz SINE + chr7:66126467-66126511 chr7 66126467 66126511 Alu SINE + chr7:66126518-66126570 chr7 66126518 66126570 AluSq10 SINE + chr7:66149429-66149457 chr7 66149429 66149457 (AAACA)n Simple_repeat + chr7:66152471-66152514 chr7 66152471 66152514 A-rich Low_complexity + chr7:66204967-66205223 chr7 66204967 66205223 AluJr SINE - chr7:66788686-66788748 chr7 66788686 66788748 MamRTE1 LINE - chr7:6682628-6682682 chr7 6682628 6682682 GA-rich Low_complexity + chr7:6684310-6684365 chr7 6684310 6684365 (CCTGGTG)n Simple_repeat + chr7:6684322-6684359 chr7 6684322 6684359 (TGCCTC)n Simple_repeat + chr7:6770322-6770448 chr7 6770322 6770448 MIR3 SINE - chr7:6771320-6771378 chr7 6771320 6771378 AluSz6 SINE + chr7:6772151-6772535 chr7 6772151 6772535 MSTA LTR - chr7:6772927-6772961 chr7 6772927 6772961 (ATTTCTC)n Simple_repeat + chr7:6772970-6773148 chr7 6772970 6773148 L2 LINE + chr7:6773205-6773523 chr7 6773205 6773523 AluJb SINE - chr7:6773523-6773640 chr7 6773523 6773640 FLAM_C SINE - chr7:6791280-6791565 chr7 6791280 6791565 AluSx SINE + chr7:6791565-6791604 chr7 6791565 6791604 (AAAAC)n Simple_repeat + chr7:72300551-72300600 chr7 72300551 72300600 (TTTGG)n Simple_repeat + chr7:72301555-72301582 chr7 72301555 72301582 (T)n Simple_repeat + chr7:72306087-72306390 chr7 72306087 72306390 AluSp SINE - chr7:72423066-72423363 chr7 72423066 72423363 AluSx1 SINE + chr7:72424509-72424670 chr7 72424509 72424670 FRAM SINE - chr7:72429033-72429071 chr7 72429033 72429071 Alu SINE - chr7:72443229-72443282 chr7 72443229 72443282 (CCT)n Simple_repeat + chr7:72443411-72443517 chr7 72443411 72443517 L2 LINE + chr7:72444569-72444600 chr7 72444569 72444600 (GCAGGA)n Simple_repeat + chr7:72447821-72447936 chr7 72447821 72447936 MIRb SINE - chr7:72448080-72448100 chr7 72448080 72448100 (TA)n Simple_repeat + chr7:72448702-72448724 chr7 72448702 72448724 (TA)n Simple_repeat + chr7:72449333-72449368 chr7 72449333 72449368 (TTAT)n Simple_repeat + chr7:72450474-72450513 chr7 72450474 72450513 MamTip2b DNA + chr7:72450901-72450944 chr7 72450901 72450944 (AAAT)n Simple_repeat + chr7:72453222-72453254 chr7 72453222 72453254 (TTTA)n Simple_repeat + chr7:72453893-72453990 chr7 72453893 72453990 HY3 scRNA - chr7:72455750-72455782 chr7 72455750 72455782 (GTTT)n Simple_repeat + chr7:72457932-72458008 chr7 72457932 72458008 (TA)n Simple_repeat + chr7:72458058-72458168 chr7 72458058 72458168 AluSx SINE - chr7:72465552-72465861 chr7 72465552 72465861 AluSz6 SINE + chr7:72465862-72465962 chr7 72465862 72465962 GA-rich Low_complexity + chr7:72466038-72466189 chr7 72466038 72466189 FRAM SINE + chr7:72466213-72466485 chr7 72466213 72466485 AluSz SINE + chr7:72466533-72466842 chr7 72466533 72466842 AluSq2 SINE - chr7:72466844-72467649 chr7 72466844 72467649 ORSL DNA + chr7:72466949-72467262 chr7 72466949 72467262 AluJr SINE - chr7:72467660-72467965 chr7 72467660 72467965 AluSx1 SINE + chr7:72468037-72468076 chr7 72468037 72468076 (GT)n Simple_repeat + chr7:72468079-72468119 chr7 72468079 72468119 GA-rich Low_complexity + chr7:72468218-72468354 chr7 72468218 72468354 MIR SINE - chr7:72468357-72468549 chr7 72468357 72468549 AluYj4 SINE + chr7:72477049-72477089 chr7 72477049 72477089 (TTTTAT)n Simple_repeat + chr7:72477089-72477221 chr7 72477089 72477221 AluJo SINE - chr7:72477512-72477812 chr7 72477512 72477812 AluSg4 SINE + chr7:72478546-72478594 chr7 72478546 72478594 (AAT)n Simple_repeat + chr7:72480368-72480497 chr7 72480368 72480497 AluJr SINE + chr7:72480783-72480811 chr7 72480783 72480811 (AAAAT)n Simple_repeat + chr7:72481130-72481162 chr7 72481130 72481162 A-rich Low_complexity + chr7:72483999-72484202 chr7 72483999 72484202 AluJr SINE + chr7:72484626-72484838 chr7 72484626 72484838 L1ME4a LINE + chr7:72485623-72485914 chr7 72485623 72485914 AluSq2 SINE + chr7:72486327-72486604 chr7 72486327 72486604 AluSg SINE + chr7:72486604-72487173 chr7 72486604 72487173 MER84-int LTR - chr7:72486638-72487025 chr7 72486638 72487025 MSTA LTR + chr7:72488519-72488668 chr7 72488519 72488668 AluSq2 SINE + chr7:72488668-72488726 chr7 72488668 72488726 Alu SINE + chr7:72488724-72488943 chr7 72488724 72488943 MER21C LTR + chr7:72488954-72489116 chr7 72488954 72489116 FRAM SINE + chr7:72489523-72489588 chr7 72489523 72489588 FLAM_C SINE - chr7:72498602-72498660 chr7 72498602 72498660 OldhAT1 DNA + chr7:72501079-72501230 chr7 72501079 72501230 FRAM SINE + chr7:72501249-72501363 chr7 72501249 72501363 MER5A DNA - chr7:72501414-72501508 chr7 72501414 72501508 L2d LINE - chr7:72502567-72502698 chr7 72502567 72502698 MLT1B LTR + chr7:72504215-72504252 chr7 72504215 72504252 (TG)n Simple_repeat + chr7:72504511-72504639 chr7 72504511 72504639 MIRb SINE - chr7:72506509-72506566 chr7 72506509 72506566 (AAT)n Simple_repeat + chr7:72509281-72509592 chr7 72509281 72509592 AluSp SINE - chr7:72509640-72509736 chr7 72509640 72509736 HY3 scRNA + chr7:72510973-72511264 chr7 72510973 72511264 AluSz6 SINE - chr7:72512062-72512265 chr7 72512062 72512265 AluJr SINE + chr7:72512607-72512627 chr7 72512607 72512627 (TA)n Simple_repeat + chr7:72512689-72512901 chr7 72512689 72512901 L1ME4a LINE + chr7:72513685-72513976 chr7 72513685 72513976 AluSq2 SINE + chr7:72514389-72514666 chr7 72514389 72514666 AluSg SINE + chr7:72514700-72515087 chr7 72514700 72515087 MSTA LTR + chr7:72515108-72515235 chr7 72515108 72515235 MER84-int LTR - chr7:72515257-72515385 chr7 72515257 72515385 HERV9-int LTR - chr7:72516581-72516730 chr7 72516581 72516730 AluSx SINE + chr7:72516730-72516788 chr7 72516730 72516788 Alu SINE + chr7:72516794-72517005 chr7 72516794 72517005 MER21C LTR + chr7:72517016-72517178 chr7 72517016 72517178 FRAM SINE + chr7:72518012-72518044 chr7 72518012 72518044 (AAAC)n Simple_repeat + chr7:72520811-72520872 chr7 72520811 72520872 (TCCAGCC)n Simple_repeat + chr7:72526664-72526722 chr7 72526664 72526722 OldhAT1 DNA + chr7:72527681-72527710 chr7 72527681 72527710 (AAAAC)n Simple_repeat + chr7:72566400-72566418 chr7 72566400 72566418 (TTT)n Simple_repeat + chr7:72696209-72696294 chr7 72696209 72696294 MIR SINE - chr7:72696301-72696923 chr7 72696301 72696923 L1ME3G LINE + chr7:72697253-72697293 chr7 72697253 72697293 (T)n Simple_repeat + chr7:72699647-72700413 chr7 72699647 72700413 L1ME3B LINE - chr7:74293927-74294012 chr7 74293927 74294012 MIR SINE - chr7:74294019-74294643 chr7 74294019 74294643 L1ME3G LINE + chr7:74294085-74294437 chr7 74294085 74294437 AluJb SINE - chr7:74294984-74295739 chr7 74294984 74295739 L1ME3B LINE - chr7:74295042-74295378 chr7 74295042 74295378 AluJr SINE - chr7:74296203-74296302 chr7 74296203 74296302 HAL1 LINE + chr7:74296309-74296460 chr7 74296309 74296460 FRAM SINE + chr7:74296805-74297114 chr7 74296805 74297114 AluSq2 SINE - chr7:74297221-74297534 chr7 74297221 74297534 AluJr SINE - chr7:74298288-74298339 chr7 74298288 74298339 (GAGT)n Simple_repeat + chr7:74298311-74298344 chr7 74298311 74298344 (GTGTGT)n Simple_repeat + chr7:74298339-74298376 chr7 74298339 74298376 GA-rich Low_complexity + chr7:74298478-74298614 chr7 74298478 74298614 MIR SINE - chr7:74298617-74298809 chr7 74298617 74298809 AluYj4 SINE + chr7:74301971-74302134 chr7 74301971 74302134 AluSc SINE + chr7:74302738-74303100 chr7 74302738 74303100 L1ME3D LINE + chr7:74304251-74304384 chr7 74304251 74304384 AluYm1 SINE - chr7:74305023-74305229 chr7 74305023 74305229 L1ME3B LINE + chr7:74305797-74305927 chr7 74305797 74305927 (AT)n Simple_repeat + chr7:74305928-74306221 chr7 74305928 74306221 AluSq2 SINE - chr7:74307318-74307358 chr7 74307318 74307358 (TTTTAT)n Simple_repeat + chr7:74308536-74308819 chr7 74308536 74308819 AluSx1 SINE + chr7:74308819-74308861 chr7 74308819 74308861 (AAT)n Simple_repeat + chr7:74311935-74312031 chr7 74311935 74312031 HY3 scRNA + chr7:74313000-74313017 chr7 74313000 74313017 (CA)n Simple_repeat + chr7:74313017-74313061 chr7 74313017 74313061 (AT)n Simple_repeat + chr7:74314144-74314348 chr7 74314144 74314348 AluJr SINE + chr7:74314772-74314984 chr7 74314772 74314984 L1ME4a LINE + chr7:74316784-74317171 chr7 74316784 74317171 MSTA LTR + chr7:74317341-74317469 chr7 74317341 74317469 HERV9-int LTR - chr7:74376788-74376806 chr7 74376788 74376806 (T)n Simple_repeat + chr7:74440293-74440593 chr7 74440293 74440593 AluSz SINE - chr7:74656052-74656070 chr7 74656052 74656070 A-rich Low_complexity + chr7:74712813-74712845 chr7 74712813 74712845 (T)n Simple_repeat + chr7:74801495-74801814 chr7 74801495 74801814 MLT1F LTR + chr7:74802299-74802428 chr7 74802299 74802428 AluJr SINE - chr7:74802660-74802943 chr7 74802660 74802943 AluSx1 SINE + chr7:74803883-74804187 chr7 74803883 74804187 AluSz SINE + chr7:74805814-74806114 chr7 74805814 74806114 AluSz SINE + chr7:74870239-74870257 chr7 74870239 74870257 A-rich Low_complexity + chr7:74921501-74921629 chr7 74921501 74921629 HERV9-int LTR + chr7:74921799-74922186 chr7 74921799 74922186 MSTA LTR - chr7:74922220-74922497 chr7 74922220 74922497 AluSg SINE - chr7:74923985-74924197 chr7 74923985 74924197 L1ME4a LINE - chr7:74924621-74924824 chr7 74924621 74924824 AluJr SINE - chr7:74925622-74925913 chr7 74925622 74925913 AluSz6 SINE + chr7:74927126-74927222 chr7 74927126 74927222 HY3 scRNA - chr7:74930055-74930924 chr7 74930055 74930924 L2c LINE + chr7:74930291-74930339 chr7 74930291 74930339 (ATT)n Simple_repeat + chr7:74930339-74930619 chr7 74930339 74930619 AluSx1 SINE - chr7:74932206-74932334 chr7 74932206 74932334 MIRb SINE + chr7:74932486-74932713 chr7 74932486 74932713 AluJr SINE + chr7:74932593-74932626 chr7 74932593 74932626 (AC)n Simple_repeat + chr7:74932756-74933052 chr7 74932756 74933052 AluSz6 SINE - chr7:74933299-74933747 chr7 74933299 74933747 MIRb SINE - chr7:74933315-74933626 chr7 74933315 74933626 AluSx1 SINE + chr7:74934143-74934274 chr7 74934143 74934274 MLT1B LTR - chr7:74934668-74934961 chr7 74934668 74934961 AluSq2 SINE + chr7:74935333-74935427 chr7 74935333 74935427 L2d LINE + chr7:74935478-74935592 chr7 74935478 74935592 MER5A DNA + chr7:74935611-74935762 chr7 74935611 74935762 FRAM SINE - chr7:74938181-74938239 chr7 74938181 74938239 OldhAT1 DNA - chr7:74946730-74947323 chr7 74946730 74947323 AluJb SINE + chr7:74947263-74947331 chr7 74947263 74947331 SVA_B Retroposon - chr7:74947730-74947892 chr7 74947730 74947892 FRAM SINE - chr7:74947903-74948114 chr7 74947903 74948114 MER21C LTR - chr7:74948120-74948327 chr7 74948120 74948327 AluSx SINE - chr7:74949821-74950208 chr7 74949821 74950208 MSTA LTR - chr7:74950242-74950519 chr7 74950242 74950519 AluSg SINE - chr7:74950901-74951613 chr7 74950901 74951613 LTR45B LTR + chr7:74950932-74951223 chr7 74950932 74951223 AluSq2 SINE - chr7:74952007-74952219 chr7 74952007 74952219 L1ME4a LINE - chr7:74952643-74952846 chr7 74952643 74952846 AluJr SINE - chr7:74955119-74955148 chr7 74955119 74955148 (TTTC)n Simple_repeat + chr7:74958080-74958949 chr7 74958080 74958949 L2c LINE + chr7:74958316-74958364 chr7 74958316 74958364 (ATT)n Simple_repeat + chr7:74958364-74958644 chr7 74958364 74958644 AluSx1 SINE - chr7:74959879-74960178 chr7 74959879 74960178 AluJr SINE - chr7:74960231-74960359 chr7 74960231 74960359 MIRb SINE + chr7:74960511-74960738 chr7 74960511 74960738 AluJr SINE + chr7:74960618-74960651 chr7 74960618 74960651 (AC)n Simple_repeat + chr7:74960781-74961077 chr7 74960781 74961077 AluSz6 SINE - chr7:74961324-74961772 chr7 74961324 74961772 MIRb SINE - chr7:74961340-74961651 chr7 74961340 74961651 AluSx1 SINE + chr7:74961859-74962167 chr7 74961859 74962167 AluSc SINE - chr7:74962168-74962299 chr7 74962168 74962299 MLT1B LTR - chr7:74962693-74962986 chr7 74962693 74962986 AluSq2 SINE + chr7:74963358-74963452 chr7 74963358 74963452 L2d LINE + chr7:74963503-74963617 chr7 74963503 74963617 MER5A DNA + chr7:74963636-74963787 chr7 74963636 74963787 FRAM SINE - chr7:74963882-74964583 chr7 74963882 74964583 L3 LINE + chr7:74963942-74964250 chr7 74963942 74964250 AluSx SINE - chr7:74964682-74964996 chr7 74964682 74964996 AluSq2 SINE - chr7:74965062-74965365 chr7 74965062 74965365 AluJr SINE - chr7:74965220-74965249 chr7 74965220 74965249 (TTTTG)n Simple_repeat + chr7:74966208-74966266 chr7 74966208 74966266 OldhAT1 DNA - chr7:74966541-74966854 chr7 74966541 74966854 AluSx SINE + chr7:74966932-74967237 chr7 74966932 74967237 AluSx1 SINE + chr7:74967922-74968255 chr7 74967922 74968255 AluSz SINE + chr7:74968255-74968297 chr7 74968255 74968297 A-rich Low_complexity + chr7:74968912-74969222 chr7 74968912 74969222 AluSx SINE - chr7:74969256-74969542 chr7 74969256 74969542 AluJo SINE - chr7:74970248-74970279 chr7 74970248 74970279 (A)n Simple_repeat + chr7:74970989-74971595 chr7 74970989 74971595 AluJr SINE - chr7:74971154-74971457 chr7 74971154 74971457 AluSz6 SINE - chr7:74972368-74972568 chr7 74972368 74972568 AluJb SINE + chr7:74974749-74975342 chr7 74974749 74975342 AluJb SINE + chr7:74974883-74974915 chr7 74974883 74974915 (GTTT)n Simple_repeat + chr7:74974917-74975195 chr7 74974917 74975195 AluSz SINE - chr7:74975282-74975350 chr7 74975282 74975350 SVA_B Retroposon - chr7:74975372-74975390 chr7 74975372 74975390 (A)n Simple_repeat + chr7:74975392-74975693 chr7 74975392 74975693 AluYk2 SINE + chr7:74975751-74975913 chr7 74975751 74975913 FRAM SINE - chr7:74975924-74976135 chr7 74975924 74976135 MER21C LTR - chr7:74976141-74976348 chr7 74976141 74976348 AluSx SINE - chr7:74976890-74977191 chr7 74976890 74977191 AluSg SINE - chr7:74977193-74977497 chr7 74977193 74977497 AluSq2 SINE - chr7:74977506-74977672 chr7 74977506 74977672 HERV9-int LTR + chr7:74977694-74977821 chr7 74977694 74977821 MER84-int LTR + chr7:74977842-74978225 chr7 74977842 74978225 MSTA LTR - chr7:74978259-74978536 chr7 74978259 74978536 AluSg SINE - chr7:74978918-74979630 chr7 74978918 74979630 LTR45B LTR + chr7:74978949-74979240 chr7 74978949 74979240 AluSq2 SINE - chr7:74979640-74979933 chr7 74979640 74979933 AluSz SINE + chr7:74980024-74980236 chr7 74980024 74980236 L1ME4a LINE - chr7:74980318-74980640 chr7 74980318 74980640 AluSx SINE + chr7:74980660-74980863 chr7 74980660 74980863 AluJr SINE - chr7:74981661-74981958 chr7 74981661 74981958 AluSz6 SINE + chr7:74983099-74983128 chr7 74983099 74983128 (TTTC)n Simple_repeat + chr7:74983131-74983227 chr7 74983131 74983227 HY3 scRNA - chr7:74983259-74983730 chr7 74983259 74983730 MIR SINE + chr7:74983275-74983585 chr7 74983275 74983585 AluSp SINE + chr7:74983733-74983768 chr7 74983733 74983768 (T)n Simple_repeat + chr7:74983771-74984072 chr7 74983771 74984072 AluSz SINE - chr7:74984082-74984110 chr7 74984082 74984110 (TTTAT)n Simple_repeat + chr7:74984110-74984393 chr7 74984110 74984393 AluSx1 SINE - chr7:74984398-74984525 chr7 74984398 74984525 AluJr SINE - chr7:74984525-74984620 chr7 74984525 74984620 MIRb SINE + chr7:74985258-74985530 chr7 74985258 74985530 AluSq2 SINE + chr7:74985749-74985774 chr7 74985749 74985774 (T)n Simple_repeat + chr7:74985793-74986063 chr7 74985793 74986063 AluY SINE - chr7:74986063-74986932 chr7 74986063 74986932 L2c LINE + chr7:74986300-74986348 chr7 74986300 74986348 (ATT)n Simple_repeat + chr7:74986348-74986631 chr7 74986348 74986631 AluSx1 SINE - chr7:74987082-74987382 chr7 74987082 74987382 AluSg SINE - chr7:74987673-74987805 chr7 74987673 74987805 AluJo SINE + chr7:74987805-74987845 chr7 74987805 74987845 (TAAAAA)n Simple_repeat + chr7:74998418-74998690 chr7 74998418 74998690 AluSz SINE - chr7:74998707-74998865 chr7 74998707 74998865 FRAM SINE - chr7:74998941-74999041 chr7 74998941 74999041 (CTTCC)n Simple_repeat + chr7:74999042-74999351 chr7 74999042 74999351 AluSz6 SINE - chr7:75021379-75021495 chr7 75021379 75021495 L2 LINE - chr7:75021614-75021667 chr7 75021614 75021667 GA-rich Low_complexity + chr7:75021749-75022041 chr7 75021749 75022041 AluSx1 SINE + chr7:75022045-75022190 chr7 75022045 75022190 L1M4 LINE + chr7:75022190-75022470 chr7 75022190 75022470 AluJo SINE + chr7:75042165-75043148 chr7 75042165 75043148 LTR5B LTR - chr7:75116753-75117014 chr7 75116753 75117014 AluJr SINE + chr7:75117020-75117088 chr7 75117020 75117088 GA-rich Low_complexity + chr7:75126780-75126823 chr7 75126780 75126823 (ATAA)n Simple_repeat + chr7:75127433-75127747 chr7 75127433 75127747 AluSx SINE - chr7:75127781-75128074 chr7 75127781 75128074 AluJo SINE - chr7:75128808-75129117 chr7 75128808 75129117 AluSx SINE + chr7:75130024-75130330 chr7 75130024 75130330 AluSz6 SINE - chr7:75131391-75131591 chr7 75131391 75131591 AluJb SINE + chr7:75133758-75133871 chr7 75133758 75133871 FLAM_C SINE + chr7:75133944-75134249 chr7 75133944 75134249 AluSx1 SINE - chr7:75134365-75134494 chr7 75134365 75134494 AluSg SINE + chr7:75134524-75134546 chr7 75134524 75134546 (A)n Simple_repeat + chr7:75134604-75134766 chr7 75134604 75134766 FRAM SINE - chr7:75134782-75135089 chr7 75134782 75135089 AluY SINE - chr7:75135095-75135318 chr7 75135095 75135318 MER21C LTR - chr7:75135318-75135539 chr7 75135318 75135539 AluSx SINE - chr7:75135999-75136066 chr7 75135999 75136066 LFSINE_Vert SINE + chr7:75136075-75136376 chr7 75136075 75136376 AluSg SINE - chr7:75136378-75136678 chr7 75136378 75136678 AluSq2 SINE - chr7:75136687-75136854 chr7 75136687 75136854 PABL_B-int LTR + chr7:75136876-75137003 chr7 75136876 75137003 MER84-int LTR + chr7:75137023-75137407 chr7 75137023 75137407 MSTA LTR - chr7:75137445-75137724 chr7 75137445 75137724 AluSg SINE - chr7:75138104-75138810 chr7 75138104 75138810 LTR45B LTR + chr7:75138135-75138422 chr7 75138135 75138422 AluSq2 SINE - chr7:75138820-75139113 chr7 75138820 75139113 AluSz SINE + chr7:75139184-75139407 chr7 75139184 75139407 L1ME4a LINE - chr7:75139503-75139819 chr7 75139503 75139819 AluSx SINE + chr7:75139842-75140045 chr7 75139842 75140045 AluJr SINE - chr7:75140826-75140852 chr7 75140826 75140852 (AT)n Simple_repeat + chr7:75140852-75141157 chr7 75140852 75141157 AluSz6 SINE + chr7:75141157-75141308 chr7 75141157 75141308 (AT)n Simple_repeat + chr7:75142046-75142155 chr7 75142046 75142155 AluYe5 SINE + chr7:75142351-75142450 chr7 75142351 75142450 HY3 scRNA - chr7:75142498-75142792 chr7 75142498 75142792 AluSp SINE + chr7:75142802-75142937 chr7 75142802 75142937 MIR SINE + chr7:75142966-75143268 chr7 75142966 75143268 AluSz SINE - chr7:75143281-75143573 chr7 75143281 75143573 AluSx1 SINE - chr7:75143576-75143705 chr7 75143576 75143705 AluJr SINE - chr7:75143705-75143800 chr7 75143705 75143800 MIRb SINE + chr7:75144435-75144752 chr7 75144435 75144752 AluSx1 SINE + chr7:75145719-75145742 chr7 75145719 75145742 (AT)n Simple_repeat + chr7:75145772-75145887 chr7 75145772 75145887 L2c LINE - chr7:75145898-75146025 chr7 75145898 75146025 L2 LINE + chr7:75146684-75146782 chr7 75146684 75146782 FLAM_C SINE - chr7:75147372-75147476 chr7 75147372 75147476 (AT)n Simple_repeat + chr7:75147488-75147529 chr7 75147488 75147529 (AC)n Simple_repeat + chr7:75147569-75147625 chr7 75147569 75147625 L1MD LINE + chr7:75148352-75148482 chr7 75148352 75148482 AluJr SINE + chr7:75151912-75152071 chr7 75151912 75152071 HAL1M8 LINE + chr7:75153392-75153570 chr7 75153392 75153570 L2 LINE - chr7:75153579-75153613 chr7 75153579 75153613 A-rich Low_complexity + chr7:75155442-75155500 chr7 75155442 75155500 AluSz SINE - chr7:75156351-75156524 chr7 75156351 75156524 MIR3 SINE + chr7:75619330-75619377 chr7 75619330 75619377 MIRb SINE - chr7:75621023-75621162 chr7 75621023 75621162 AluJo SINE - chr7:75623683-75623760 chr7 75623683 75623760 (TGACCCC)n Simple_repeat + chr7:75733091-75733122 chr7 75733091 75733122 (AAAT)n Simple_repeat + chr7:75743802-75743832 chr7 75743802 75743832 (ATT)n Simple_repeat + chr7:75955238-75955300 chr7 75955238 75955300 FLAM_C SINE + chr7:76662444-76662595 chr7 76662444 76662595 FRAM SINE + chr7:76662614-76662728 chr7 76662614 76662728 MER5A DNA - chr7:76662779-76662873 chr7 76662779 76662873 L2d LINE - chr7:76663883-76664014 chr7 76663883 76664014 MLT1B LTR + chr7:76665533-76665582 chr7 76665533 76665582 (TG)n Simple_repeat + chr7:76665863-76665969 chr7 76665863 76665969 MIRb SINE - chr7:76671066-76671097 chr7 76671066 76671097 A-rich Low_complexity + chr7:76681764-76681964 chr7 76681764 76681964 AluJb SINE - chr7:76737804-76737832 chr7 76737804 76737832 (AATA)n Simple_repeat + chr7:76747871-76747890 chr7 76747871 76747890 SVA_B Retroposon - chr7:77316373-77316403 chr7 77316373 77316403 (TAAACT)n Simple_repeat + chr7:77316707-77316738 chr7 77316707 77316738 A-rich Low_complexity + chr7:77323290-77323405 chr7 77323290 77323405 MIR3 SINE - chr7:77324409-77324442 chr7 77324409 77324442 (ATA)n Simple_repeat + chr7:77324727-77324747 chr7 77324727 77324747 (ATA)n Simple_repeat + chr7:86780877-86781096 chr7 86780877 86781096 MIR SINE + chr7:86965050-86965191 chr7 86965050 86965191 L2c LINE + chr7:86965634-86965914 chr7 86965634 86965914 AluJr SINE + chr7:86967114-86967221 chr7 86967114 86967221 MER5A DNA + chr7:86967262-86967389 chr7 86967262 86967389 Charlie4z DNA + chr7:86968107-86968172 chr7 86968107 86968172 (ATATAC)n Simple_repeat + chr7:86968172-86968185 chr7 86968172 86968185 (TATA)n Simple_repeat + chr7:86973109-86973315 chr7 86973109 86973315 Tigger19a DNA + chr7:91826714-91826777 chr7 91826714 91826777 Eutr11 DNA + chr7:91826777-91826801 chr7 91826777 91826801 (T)n Simple_repeat + chr7:91827759-91827798 chr7 91827759 91827798 MER5A DNA + chr7:97599043-97599070 chr7 97599043 97599070 (TAAA)n Simple_repeat + chr7:97600185-97600302 chr7 97600185 97600302 AluJo SINE + chr7:97600942-97601024 chr7 97600942 97601024 (AC)n Simple_repeat + chr7:99531763-99531783 chr7 99531763 99531783 (ACC)n Simple_repeat + chr7:99875034-99875060 chr7 99875034 99875060 (CTGC)n Simple_repeat + chr7:99884480-99884513 chr7 99884480 99884513 (AG)n Simple_repeat + chr7:99895948-99895981 chr7 99895948 99895981 (CTCC)n Simple_repeat + chr7:99899400-99899506 chr7 99899400 99899506 MIRb SINE + chr7:99902497-99902591 chr7 99902497 99902591 L2d LINE + chr7:99921540-99921598 chr7 99921540 99921598 Alu SINE - chr7:99922941-99923058 chr7 99922941 99923058 PABL_B-int LTR + chr7:99925700-99925720 chr7 99925700 99925720 (AT)n Simple_repeat + chr7:99926042-99926062 chr7 99926042 99926062 (AT)n Simple_repeat + chr7:99927367-99927415 chr7 99927367 99927415 (AT)n Simple_repeat + chr7:99927415-99927432 chr7 99927415 99927432 (GT)n Simple_repeat + chr7:99929034-99929351 chr7 99929034 99929351 AluSz SINE - chr7:99931596-99931890 chr7 99931596 99931890 AluSx1 SINE - chr7:99932935-99933066 chr7 99932935 99933066 AluJo SINE + chr7:99933066-99933107 chr7 99933066 99933107 (TAAAAA)n Simple_repeat + chr8:102220294-102220320 chr8 102220294 102220320 (A)n Simple_repeat + chr8:103962677-103962698 chr8 103962677 103962698 (TT)n Simple_repeat + chr8:103977546-103977611 chr8 103977546 103977611 (CTT)n Simple_repeat + chr8:103977594-103977613 chr8 103977594 103977613 (TCA)n Simple_repeat + chr8:103984815-103984838 chr8 103984815 103984838 (AT)n Simple_repeat + chr8:104407278-104407325 chr8 104407278 104407325 (AAAC)n Simple_repeat + chr8:104512911-104512955 chr8 104512911 104512955 (CTCCCC)n Simple_repeat + chr8:109213779-109213934 chr8 109213779 109213934 L1MC4a LINE + chr8:109500016-109500147 chr8 109500016 109500147 L3b LINE - chr8:109500997-109501114 chr8 109500997 109501114 MER3 DNA + chr8:110236880-110236906 chr8 110236880 110236906 MamTip2b DNA + chr8:110242287-110242312 chr8 110242287 110242312 (GTTTT)n Simple_repeat + chr8:110242725-110242756 chr8 110242725 110242756 L2a LINE + chr8:110244975-110245019 chr8 110244975 110245019 MIRb SINE - chr8:110246371-110246388 chr8 110246371 110246388 (AC)n Simple_repeat + chr8:115293926-115299962 chr8 115293926 115299962 HERVH-int LTR + chr8:115299993-115300611 chr8 115299993 115300611 MIR SINE - chr8:115301587-115302033 chr8 115301587 115302033 L1MC1 LINE - chr8:115302033-115303807 chr8 115302033 115303807 L1MCa LINE - chr8:115304714-115304909 chr8 115304714 115304909 MIRb SINE + chr8:115305197-115305823 chr8 115305197 115305823 LTR80B LTR + chr8:115306394-115306701 chr8 115306394 115306701 MER33 DNA + chr8:115306798-115309513 chr8 115306798 115309513 MLT1E3 LTR - chr8:115307663-115307686 chr8 115307663 115307686 (CTTT)n Simple_repeat + chr8:115308160-115308573 chr8 115308160 115308573 L2a LINE - chr8:115309542-115314406 chr8 115309542 115314406 L1ME1 LINE - chr8:115310012-115310920 chr8 115310012 115310920 L1PA16 LINE + chr8:115316784-115317034 chr8 115316784 115317034 L1PA15 LINE + chr8:115317285-115317357 chr8 115317285 115317357 L1MC LINE - chr8:11874007-11874107 chr8 11874007 11874107 L2d LINE + chr8:12055330-12055620 chr8 12055330 12055620 AluJr SINE + chr8:12055631-12055789 chr8 12055631 12055789 MLT1C2 LTR + chr8:12055793-12055894 chr8 12055793 12055894 AluSz SINE + chr8:12056119-12056338 chr8 12056119 12056338 MIR SINE - chr8:12059541-12059603 chr8 12059541 12059603 (AT)n Simple_repeat + chr8:12062136-12062292 chr8 12062136 12062292 MIRb SINE + chr8:12062292-12062610 chr8 12062292 12062610 AluJr SINE - chr8:12064054-12064214 chr8 12064054 12064214 MER104 DNA - chr8:12065535-12065689 chr8 12065535 12065689 AluSq2 SINE - chr8:12066063-12066221 chr8 12066063 12066221 LTR78B LTR + chr8:12066256-12066334 chr8 12066256 12066334 Alu SINE + chr8:12066631-12066767 chr8 12066631 12066767 MIR SINE + chr8:12067362-12067622 chr8 12067362 12067622 LTR16A1 LTR + chr8:12067747-12067940 chr8 12067747 12067940 L2a LINE + chr8:12070093-12070167 chr8 12070093 12070167 GA-rich Low_complexity + chr8:12071033-12071223 chr8 12071033 12071223 MIR SINE + chr8:12072497-12072793 chr8 12072497 12072793 AluSq2 SINE - chr8:12072810-12073027 chr8 12072810 12073027 MIR SINE - chr8:12073374-12073492 chr8 12073374 12073492 L2b LINE - chr8:12073492-12073655 chr8 12073492 12073655 MIRb SINE - chr8:12086421-12086536 chr8 12086421 12086536 MIRc SINE + chr8:120874902-120875100 chr8 120874902 120875100 7SLRNA srpRNA + chr8:12088109-12088181 chr8 12088109 12088181 MLT1C2 LTR - chr8:12088586-12088734 chr8 12088586 12088734 MER5A DNA + chr8:12091126-12091236 chr8 12091126 12091236 L1MC5a LINE - chr8:12091272-12091346 chr8 12091272 12091346 MER66B LTR + chr8:12155530-12155609 chr8 12155530 12155609 MADE1 DNA + chr8:12166528-12166593 chr8 12166528 12166593 MER41A LTR + chr8:12167094-12167113 chr8 12167094 12167113 (T)n Simple_repeat + chr8:12180190-12180221 chr8 12180190 12180221 (TAA)n Simple_repeat + chr8:12191165-12191216 chr8 12191165 12191216 5S rRNA - chr8:12198851-12198904 chr8 12198851 12198904 GA-rich Low_complexity + chr8:12208390-12208423 chr8 12208390 12208423 (TAATT)n Simple_repeat + chr8:12214834-12214860 chr8 12214834 12214860 (TCTTT)n Simple_repeat + chr8:12220194-12220244 chr8 12220194 12220244 (ATT)n Simple_repeat + chr8:12221336-12221416 chr8 12221336 12221416 L2 LINE - chr8:12222428-12222467 chr8 12222428 12222467 (AATA)n Simple_repeat + chr8:12223016-12223045 chr8 12223016 12223045 (AAT)n Simple_repeat + chr8:12224738-12224784 chr8 12224738 12224784 (ATT)n Simple_repeat + chr8:12228351-12228397 chr8 12228351 12228397 Alu SINE + chr8:12233460-12233507 chr8 12233460 12233507 (GT)n Simple_repeat + chr8:12241875-12241972 chr8 12241875 12241972 L1M3 LINE + chr8:12242201-12242248 chr8 12242201 12242248 (TATG)n Simple_repeat + chr8:12244744-12244792 chr8 12244744 12244792 (TG)n Simple_repeat + chr8:12246639-12246767 chr8 12246639 12246767 (AAT)n Simple_repeat + chr8:12251384-12251435 chr8 12251384 12251435 (T)n Simple_repeat + chr8:12255110-12255224 chr8 12255110 12255224 (TTTC)n Simple_repeat + chr8:12260080-12260140 chr8 12260080 12260140 (CA)n Simple_repeat + chr8:12260430-12260528 chr8 12260430 12260528 L2d2 LINE + chr8:12275660-12275679 chr8 12275660 12275679 (AC)n Simple_repeat + chr8:12276986-12277013 chr8 12276986 12277013 (TTTTG)n Simple_repeat + chr8:12279550-12279585 chr8 12279550 12279585 (TTA)n Simple_repeat + chr8:12279862-12279975 chr8 12279862 12279975 AluYc3 SINE + chr8:12295037-12295352 chr8 12295037 12295352 L2c LINE - chr8:12296260-12296562 chr8 12296260 12296562 AluSx SINE - chr8:12296656-12296944 chr8 12296656 12296944 AluSc SINE - chr8:12297619-12297885 chr8 12297619 12297885 AluJr SINE + chr8:12297896-12298054 chr8 12297896 12298054 MLT1C2 LTR + chr8:12298058-12298159 chr8 12298058 12298159 AluSz SINE + chr8:12298384-12298603 chr8 12298384 12298603 MIR SINE - chr8:12298765-12299070 chr8 12298765 12299070 AluJr SINE - chr8:12301821-12301877 chr8 12301821 12301877 (AT)n Simple_repeat + chr8:12304410-12304542 chr8 12304410 12304542 MIRb SINE + chr8:12304566-12304884 chr8 12304566 12304884 AluJr SINE - chr8:12306308-12306468 chr8 12306308 12306468 MER104 DNA - chr8:12308053-12308207 chr8 12308053 12308207 AluSq2 SINE - chr8:12308337-12308592 chr8 12308337 12308592 MLT1K LTR + chr8:12308581-12308739 chr8 12308581 12308739 LTR78B LTR + chr8:12308774-12308856 chr8 12308774 12308856 Alu SINE + chr8:12309153-12309289 chr8 12309153 12309289 MIR SINE + chr8:12309884-12310144 chr8 12309884 12310144 LTR16A1 LTR + chr8:12310269-12310462 chr8 12310269 12310462 L2a LINE + chr8:12312616-12312690 chr8 12312616 12312690 GA-rich Low_complexity + chr8:12313556-12313746 chr8 12313556 12313746 MIR SINE + chr8:12315332-12315549 chr8 12315332 12315549 MIR SINE - chr8:12315896-12316014 chr8 12315896 12316014 L2b LINE - chr8:12316014-12316177 chr8 12316014 12316177 MIRb SINE - chr8:12330608-12330680 chr8 12330608 12330680 MLT1C2 LTR - chr8:12331079-12331227 chr8 12331079 12331227 MER5A DNA + chr8:12332305-12332407 chr8 12332305 12332407 MER5A1 DNA + chr8:12333614-12333724 chr8 12333614 12333724 L1MC5a LINE - chr8:12333760-12333834 chr8 12333760 12333834 MER66B LTR + chr8:12335536-12335588 chr8 12335536 12335588 (TCTC)n Simple_repeat + chr8:12336598-12336723 chr8 12336598 12336723 THE1B LTR - chr8:12336828-12336870 chr8 12336828 12336870 (TGA)n Simple_repeat + chr8:12337490-12337624 chr8 12337490 12337624 L2d2 LINE + chr8:12401818-12401837 chr8 12401818 12401837 (GT)n Simple_repeat + chr8:12401838-12402141 chr8 12401838 12402141 AluSx SINE - chr8:12406928-12406954 chr8 12406928 12406954 (TGT)n Simple_repeat + chr8:12408222-12408614 chr8 12408222 12408614 MLT1H LTR + chr8:12425556-12425583 chr8 12425556 12425583 (A)n Simple_repeat + chr8:12433816-12433867 chr8 12433816 12433867 (AC)n Simple_repeat + chr8:12439524-12439599 chr8 12439524 12439599 L2c LINE - chr8:12439690-12439849 chr8 12439690 12439849 MER5B DNA + chr8:124460015-124460042 chr8 124460015 124460042 A-rich Low_complexity + chr8:12448929-12449147 chr8 12448929 12449147 AluSg SINE - chr8:12466657-12466850 chr8 12466657 12466850 MIR SINE - chr8:12483497-12483593 chr8 12483497 12483593 L2c LINE + chr8:12483657-12483684 chr8 12483657 12483684 (A)n Simple_repeat + chr8:12493885-12493908 chr8 12493885 12493908 (CCA)n Simple_repeat + chr8:125468497-125468524 chr8 125468497 125468524 (TTGT)n Simple_repeat + chr8:126036041-126036075 chr8 126036041 126036075 MSTA LTR + chr8:128809114-128809395 chr8 128809114 128809395 AluSp SINE - chr8:128809396-128809573 chr8 128809396 128809573 AluSp SINE - chr8:128809853-128809911 chr8 128809853 128809911 (AAT)n Simple_repeat + chr8:128810020-128810230 chr8 128810020 128810230 MIR SINE - chr8:128810266-128810571 chr8 128810266 128810571 AluSq2 SINE + chr8:128810822-128811132 chr8 128810822 128811132 AluSx SINE + chr8:128811224-128811322 chr8 128811224 128811322 MamTip1b DNA - chr8:128811388-128814008 chr8 128811388 128814008 L2c LINE + chr8:128811523-128811655 chr8 128811523 128811655 AluJo SINE + chr8:128811864-128812018 chr8 128811864 128812018 MIRb SINE + chr8:128812191-128812402 chr8 128812191 128812402 MIR1_Amn SINE + chr8:128812508-128812616 chr8 128812508 128812616 L2a LINE - chr8:128812792-128812811 chr8 128812792 128812811 (TTA)n Simple_repeat + chr8:128812933-128813886 chr8 128812933 128813886 L2a LINE - chr8:128813477-128813785 chr8 128813477 128813785 AluSz SINE - chr8:128814008-128814926 chr8 128814008 128814926 MER33 DNA + chr8:128814135-128814178 chr8 128814135 128814178 (TTAT)n Simple_repeat + chr8:128814179-128814460 chr8 128814179 128814460 AluSx1 SINE - chr8:128814462-128814761 chr8 128814462 128814761 AluJo SINE - chr8:128815260-128815313 chr8 128815260 128815313 (TGGAGG)n Simple_repeat + chr8:128815852-128816478 chr8 128815852 128816478 AluJo SINE + chr8:128815969-128816264 chr8 128815969 128816264 AluSg SINE - chr8:128816586-128816733 chr8 128816586 128816733 AluJb SINE - chr8:128817857-128820993 chr8 128817857 128820993 L2a LINE - chr8:128818149-128819570 chr8 128818149 128819570 L1ME3G LINE + chr8:128818426-128818722 chr8 128818426 128818722 AluSg SINE + chr8:128818766-128819215 chr8 128818766 128819215 L1ME1 LINE - chr8:128819598-128819847 chr8 128819598 128819847 AluJr SINE - chr8:128820005-128820312 chr8 128820005 128820312 AluY SINE - chr8:128820312-128820593 chr8 128820312 128820593 AluSx SINE - chr8:128820993-128821305 chr8 128820993 128821305 AluSx1 SINE + chr8:128821435-128821738 chr8 128821435 128821738 AluJr SINE - chr8:128823019-128823763 chr8 128823019 128823763 L2c LINE + chr8:128823446-128823626 chr8 128823446 128823626 Charlie8 DNA - chr8:128824208-128824354 chr8 128824208 128824354 AluJb SINE + chr8:128824354-128824389 chr8 128824354 128824389 (AAAAG)n Simple_repeat + chr8:128824389-128824446 chr8 128824389 128824446 GA-rich Low_complexity + chr8:128824446-128824533 chr8 128824446 128824533 (AGGAAGGC)n Simple_repeat + chr8:128824533-128824545 chr8 128824533 128824545 polypurine Low_complexity + chr8:128824545-128824823 chr8 128824545 128824823 AluJb SINE + chr8:128824823-128824981 chr8 128824823 128824981 GA-rich Low_complexity + chr8:128825397-128825536 chr8 128825397 128825536 (AT)n Simple_repeat + chr8:128825813-128825970 chr8 128825813 128825970 MIR SINE + chr8:128826068-128826328 chr8 128826068 128826328 AluSq2 SINE - chr8:128828089-128828382 chr8 128828089 128828382 AluSg SINE + chr8:128828569-128828693 chr8 128828569 128828693 AluJo SINE - chr8:128829597-128829820 chr8 128829597 128829820 (TA)n Simple_repeat + chr8:128829845-128830087 chr8 128829845 128830087 AluJb SINE + chr8:128830872-128831116 chr8 128830872 128831116 MIR SINE + chr8:128831127-128831318 chr8 128831127 128831318 AluJo SINE - chr8:128831586-128831816 chr8 128831586 128831816 MIR SINE - chr8:128832875-128832943 chr8 128832875 128832943 MIRc SINE + chr8:128832943-128833254 chr8 128832943 128833254 AluSz6 SINE - chr8:128833775-128834076 chr8 128833775 128834076 AluY SINE + chr8:128834132-128834200 chr8 128834132 128834200 MER91B DNA - chr8:128834214-128834435 chr8 128834214 128834435 MIR SINE + chr8:128834541-128834847 chr8 128834541 128834847 AluSz SINE + chr8:128835919-128836064 chr8 128835919 128836064 HAL1ME LINE - chr8:128836156-128836434 chr8 128836156 128836434 AluJr SINE + chr8:128836601-128836703 chr8 128836601 128836703 AluJb SINE - chr8:128837083-128837389 chr8 128837083 128837389 AluSz SINE + chr8:128837398-128837592 chr8 128837398 128837592 L1M5 LINE - chr8:128837871-128838012 chr8 128837871 128838012 MIRc SINE + chr8:128838409-128838613 chr8 128838409 128838613 MIR SINE + chr8:128838820-128839062 chr8 128838820 128839062 L1ME4b LINE + chr8:128840210-128840466 chr8 128840210 128840466 Charlie26a DNA - chr8:128840473-128840556 chr8 128840473 128840556 MIR3 SINE - chr8:128841258-128841536 chr8 128841258 128841536 AluSq2 SINE + chr8:128841795-128841998 chr8 128841795 128841998 MIR3 SINE + chr8:128842894-128843458 chr8 128842894 128843458 MLT2A1 LTR + chr8:128843289-128843311 chr8 128843289 128843311 (GT)n Simple_repeat + chr8:128843310-128843386 chr8 128843310 128843386 (TA)n Simple_repeat + chr8:128843359-128843390 chr8 128843359 128843390 (TATATC)n Simple_repeat + chr8:128843458-128843549 chr8 128843458 128843549 AluJr4 SINE + chr8:128844113-128844159 chr8 128844113 128844159 (CTGCTCT)n Simple_repeat + chr8:128844213-128844340 chr8 128844213 128844340 MIRc SINE - chr8:128844509-128844643 chr8 128844509 128844643 MER117 DNA - chr8:128844769-128845172 chr8 128844769 128845172 L3 LINE + chr8:128844822-128845120 chr8 128844822 128845120 AluY SINE + chr8:128845707-128845982 chr8 128845707 128845982 AluJb SINE - chr8:128846100-128846260 chr8 128846100 128846260 MER5A DNA - chr8:128847988-128848029 chr8 128847988 128848029 CR1-3_Croc LINE + chr8:128848155-128848462 chr8 128848155 128848462 L2a LINE + chr8:128848545-128848689 chr8 128848545 128848689 L1PA10 LINE - chr8:128848900-128849105 chr8 128848900 128849105 MIR SINE - chr8:128849628-128849654 chr8 128849628 128849654 (T)n Simple_repeat + chr8:128849851-128850007 chr8 128849851 128850007 MIR SINE - chr8:128850669-128850943 chr8 128850669 128850943 AluSx1 SINE + chr8:128850962-128851510 chr8 128850962 128851510 MIR SINE - chr8:128851074-128851420 chr8 128851074 128851420 Tigger3a DNA + chr8:128851510-128851827 chr8 128851510 128851827 AluJr SINE + chr8:128851828-128851861 chr8 128851828 128851861 A-rich Low_complexity + chr8:128852142-128852269 chr8 128852142 128852269 LTR33 LTR - chr8:128852320-128852451 chr8 128852320 128852451 L2 LINE - chr8:128853320-128853431 chr8 128853320 128853431 MIRb SINE + chr8:128853509-128853798 chr8 128853509 128853798 AluSz SINE - chr8:128853805-128853903 chr8 128853805 128853903 MIRc SINE - chr8:128853972-128854268 chr8 128853972 128854268 AluSg SINE - chr8:128856227-128856460 chr8 128856227 128856460 AluYh3 SINE - chr8:128859226-128859486 chr8 128859226 128859486 AluSx1 SINE - chr8:128860150-128860234 chr8 128860150 128860234 FRAM SINE - chr8:128860370-128860475 chr8 128860370 128860475 L1MC3 LINE - chr8:128860516-128860637 chr8 128860516 128860637 FLAM_A SINE + chr8:128863552-128863778 chr8 128863552 128863778 MIRb SINE + chr8:128864596-128864960 chr8 128864596 128864960 MIRb SINE + chr8:128864685-128864875 chr8 128864685 128864875 MIR SINE + chr8:128865745-128866035 chr8 128865745 128866035 AluSx1 SINE + chr8:128867155-128867326 chr8 128867155 128867326 MIR SINE - chr8:128867343-128867372 chr8 128867343 128867372 (TC)n Simple_repeat + chr8:128868962-128869105 chr8 128868962 128869105 MIR SINE - chr8:128869507-128869558 chr8 128869507 128869558 L2c LINE - chr8:128869992-128870086 chr8 128869992 128870086 L2a LINE + chr8:128870653-128870696 chr8 128870653 128870696 (AAAT)n Simple_repeat + chr8:128871943-128872084 chr8 128871943 128872084 MIRb SINE + chr8:128873572-128873698 chr8 128873572 128873698 AluSz6 SINE + chr8:128873931-128874059 chr8 128873931 128874059 MIR SINE + chr8:128875707-128875977 chr8 128875707 128875977 L2b LINE + chr8:128875979-128876050 chr8 128875979 128876050 MIR3 SINE - chr8:128876491-128876715 chr8 128876491 128876715 MIR SINE + chr8:128877288-128877398 chr8 128877288 128877398 MIR SINE + chr8:128880322-128880425 chr8 128880322 128880425 MIR SINE - chr8:128882957-128883113 chr8 128882957 128883113 MIRb SINE + chr8:128883195-128883224 chr8 128883195 128883224 (CTC)n Simple_repeat + chr8:128885740-128885977 chr8 128885740 128885977 MIRb SINE - chr8:128886119-128886175 chr8 128886119 128886175 L2b LINE + chr8:128886185-128886644 chr8 128886185 128886644 L2c LINE - chr8:128886770-128886837 chr8 128886770 128886837 MIR SINE + chr8:128887557-128887626 chr8 128887557 128887626 (TCTCTG)n Simple_repeat + chr8:128887913-128888094 chr8 128887913 128888094 MIRc SINE + chr8:128888291-128888390 chr8 128888291 128888390 MER5A DNA + chr8:128888499-128888536 chr8 128888499 128888536 (GT)n Simple_repeat + chr8:128888647-128888705 chr8 128888647 128888705 (TTTTTA)n Simple_repeat + chr8:128888763-128888827 chr8 128888763 128888827 (CTCCT)n Simple_repeat + chr8:128889784-128889928 chr8 128889784 128889928 L2d LINE + chr8:128889971-128890184 chr8 128889971 128890184 AluJb SINE + chr8:128890594-128890751 chr8 128890594 128890751 MIRb SINE - chr8:128890774-128890849 chr8 128890774 128890849 (TCCC)n Simple_repeat + chr8:128890819-128890857 chr8 128890819 128890857 (CTGT)n Simple_repeat + chr8:128891809-128891987 chr8 128891809 128891987 MIR SINE + chr8:128892120-128892270 chr8 128892120 128892270 MIR3 SINE + chr8:128893655-128893712 chr8 128893655 128893712 (TAT)n Simple_repeat + chr8:128895234-128895293 chr8 128895234 128895293 (AC)n Simple_repeat + chr8:128895299-128895338 chr8 128895299 128895338 (CA)n Simple_repeat + chr8:128895720-128895880 chr8 128895720 128895880 L1PA4 LINE + chr8:128898196-128898372 chr8 128898196 128898372 AluSg4 SINE + chr8:128901285-128901358 chr8 128901285 128901358 (CTTC)n Simple_repeat + chr8:128901714-128901853 chr8 128901714 128901853 MIR SINE + chr8:128901910-128902024 chr8 128901910 128902024 MIR SINE + chr8:128902246-128902299 chr8 128902246 128902299 L2b LINE + chr8:128902257-128902344 chr8 128902257 128902344 L2d LINE - chr8:128903309-128903390 chr8 128903309 128903390 L2b LINE - chr8:128904383-128904633 chr8 128904383 128904633 L2c LINE + chr8:128904744-128904860 chr8 128904744 128904860 MIRb SINE - chr8:128906014-128906115 chr8 128906014 128906115 MER94 DNA - chr8:128906645-128906776 chr8 128906645 128906776 MIRb SINE - chr8:128907931-128907972 chr8 128907931 128907972 L4_C_Mam LINE - chr8:128908015-128908218 chr8 128908015 128908218 MER58A DNA - chr8:128908411-128908478 chr8 128908411 128908478 L2b LINE - chr8:128908812-128908861 chr8 128908812 128908861 (TTTTTA)n Simple_repeat + chr8:128908874-128909056 chr8 128908874 128909056 L1PA10 LINE - chr8:128911461-128911524 chr8 128911461 128911524 MIRb SINE + chr8:128912276-128912586 chr8 128912276 128912586 AluSc8 SINE - chr8:128913824-128913947 chr8 128913824 128913947 FLAM_C SINE - chr8:128914017-128914147 chr8 128914017 128914147 AluJo SINE - chr8:128914394-128914507 chr8 128914394 128914507 MER81 DNA + chr8:128916704-128916739 chr8 128916704 128916739 (TGA)n Simple_repeat + chr8:128917021-128917195 chr8 128917021 128917195 MER45A DNA - chr8:128917726-128917757 chr8 128917726 128917757 MIRb SINE - chr8:128917815-128917859 chr8 128917815 128917859 L2d2 LINE - chr8:128917914-128918417 chr8 128917914 128918417 MIRc SINE - chr8:128918056-128918296 chr8 128918056 128918296 MIR SINE + chr8:128919017-128919528 chr8 128919017 128919528 MIR3 SINE - chr8:128920073-128920111 chr8 128920073 128920111 (GGATG)n Simple_repeat + chr8:128921634-128921817 chr8 128921634 128921817 MIRb SINE + chr8:128922577-128922674 chr8 128922577 128922674 MIRb SINE + chr8:128922864-128923113 chr8 128922864 128923113 MIR SINE - chr8:128923123-128923159 chr8 128923123 128923159 (TG)n Simple_repeat + chr8:128923159-128923178 chr8 128923159 128923178 (AG)n Simple_repeat + chr8:128923842-128923990 chr8 128923842 128923990 MIRb SINE - chr8:128924489-128924702 chr8 128924489 128924702 MIR SINE - chr8:128924945-128925232 chr8 128924945 128925232 AluSx1 SINE - chr8:128925262-128925395 chr8 128925262 128925395 AluSz SINE - chr8:128925907-128926134 chr8 128925907 128926134 L3b LINE - chr8:128927573-128927881 chr8 128927573 128927881 AluSp SINE + chr8:128927921-128928059 chr8 128927921 128928059 MIR SINE - chr8:128928314-128928518 chr8 128928314 128928518 MIRc SINE + chr8:128928593-128928789 chr8 128928593 128928789 L2d LINE + chr8:128928610-128928662 chr8 128928610 128928662 L2a LINE + chr8:128929264-128929354 chr8 128929264 128929354 MIR3 SINE + chr8:128929458-128929642 chr8 128929458 128929642 L2b LINE - chr8:128930547-128930695 chr8 128930547 128930695 MIRb SINE + chr8:128930823-128930887 chr8 128930823 128930887 L2c LINE + chr8:128931117-128931164 chr8 128931117 128931164 L3 LINE - chr8:128932323-128932429 chr8 128932323 128932429 Tigger18a DNA + chr8:128932492-128932603 chr8 128932492 128932603 Tigger13a DNA + chr8:128932611-128932835 chr8 128932611 128932835 MIR SINE + chr8:128932783-128932847 chr8 128932783 128932847 L2d2 LINE + chr8:128933425-128933486 chr8 128933425 128933486 L2b LINE - chr8:128935368-128935441 chr8 128935368 128935441 MIRc SINE - chr8:128935472-128935641 chr8 128935472 128935641 MIRb SINE - chr8:128939200-128939232 chr8 128939200 128939232 (TTCC)n Simple_repeat + chr8:128939615-128939774 chr8 128939615 128939774 L2d2 LINE + chr8:128939861-128939985 chr8 128939861 128939985 MIRb SINE + chr8:128941423-128941467 chr8 128941423 128941467 (T)n Simple_repeat + chr8:128943693-128943933 chr8 128943693 128943933 MIR SINE - chr8:128945034-128945071 chr8 128945034 128945071 (TACA)n Simple_repeat + chr8:128945178-128945294 chr8 128945178 128945294 MIRc SINE - chr8:128946500-128946615 chr8 128946500 128946615 L2b LINE - chr8:128947674-128947694 chr8 128947674 128947694 (GT)n Simple_repeat + chr8:128947723-128947855 chr8 128947723 128947855 MIRb SINE - chr8:128948280-128948597 chr8 128948280 128948597 AluSp SINE - chr8:128949784-128949794 chr8 128949784 128949794 (AG)n Simple_repeat + chr8:128949794-128949827 chr8 128949794 128949827 (AC)n Simple_repeat + chr8:128949827-128949855 chr8 128949827 128949855 (AG)n Simple_repeat + chr8:128950023-128950174 chr8 128950023 128950174 MIRb SINE - chr8:128951149-128951212 chr8 128951149 128951212 MIRc SINE - chr8:128951883-128952018 chr8 128951883 128952018 MIRb SINE - chr8:128952864-128953146 chr8 128952864 128953146 AluJr SINE - chr8:128954788-128954845 chr8 128954788 128954845 MIR SINE - chr8:128955715-128955908 chr8 128955715 128955908 MER20 DNA - chr8:128955909-128955930 chr8 128955909 128955930 (GTG)n Simple_repeat + chr8:128956348-128956497 chr8 128956348 128956497 FRAM SINE - chr8:128956569-128956737 chr8 128956569 128956737 MIRb SINE + chr8:128957446-128957776 chr8 128957446 128957776 L1ME3Cz LINE - chr8:128958080-128958263 chr8 128958080 128958263 MIRb SINE + chr8:128958469-128958588 chr8 128958469 128958588 L2a LINE - chr8:128958807-128958938 chr8 128958807 128958938 MIRb SINE - chr8:128961121-128961229 chr8 128961121 128961229 MIRb SINE + chr8:128961225-128961479 chr8 128961225 128961479 MIR SINE - chr8:128961625-128961670 chr8 128961625 128961670 (TG)n Simple_repeat + chr8:128961671-128961700 chr8 128961671 128961700 (TC)n Simple_repeat + chr8:128965760-128965948 chr8 128965760 128965948 MIRc SINE - chr8:128966035-128966094 chr8 128966035 128966094 (TTTTC)n Simple_repeat + chr8:128966916-128966986 chr8 128966916 128966986 MIR3 SINE - chr8:128967817-128967848 chr8 128967817 128967848 (TCCCC)n Simple_repeat + chr8:128967860-128968128 chr8 128967860 128968128 AluSz6 SINE - chr8:128968128-128968279 chr8 128968128 128968279 MIRb SINE - chr8:128969194-128969241 chr8 128969194 128969241 (TAT)n Simple_repeat + chr8:128969333-128969439 chr8 128969333 128969439 MIR SINE - chr8:128969878-128969945 chr8 128969878 128969945 MIR SINE - chr8:128970784-128970950 chr8 128970784 128970950 MIRc SINE - chr8:128971284-128971311 chr8 128971284 128971311 (GGGGT)n Simple_repeat + chr8:128972938-128972975 chr8 128972938 128972975 MIR SINE - chr8:128973052-128973130 chr8 128973052 128973130 L2b LINE - chr8:128974125-128974227 chr8 128974125 128974227 MIRc SINE + chr8:128974227-128974510 chr8 128974227 128974510 AluSc SINE - chr8:128974853-128975141 chr8 128974853 128975141 AluSx SINE - chr8:128975901-128975977 chr8 128975901 128975977 L2a LINE - chr8:128977072-128977200 chr8 128977072 128977200 FLAM_C SINE - chr8:128977455-128977555 chr8 128977455 128977555 L1MC4 LINE - chr8:128978508-128978633 chr8 128978508 128978633 MIRc SINE - chr8:128978816-128978990 chr8 128978816 128978990 MER3 DNA + chr8:128980139-128980184 chr8 128980139 128980184 L2c LINE - chr8:128980615-128980642 chr8 128980615 128980642 G-rich Low_complexity + chr8:128981982-128982100 chr8 128981982 128982100 MIRb SINE - chr8:128983170-128983369 chr8 128983170 128983369 MER58A DNA + chr8:128983461-128983583 chr8 128983461 128983583 MIRb SINE - chr8:128983691-128983800 chr8 128983691 128983800 L2b LINE + chr8:128983839-128984046 chr8 128983839 128984046 MIR SINE + chr8:128984741-128985012 chr8 128984741 128985012 AluSx3 SINE + chr8:128985551-128985789 chr8 128985551 128985789 MIRc SINE - chr8:128986633-128986670 chr8 128986633 128986670 (TCA)n Simple_repeat + chr8:128986670-128986961 chr8 128986670 128986961 AluSz SINE - chr8:128986961-128986973 chr8 128986961 128986973 (TCA)n Simple_repeat + chr8:128988407-128988473 chr8 128988407 128988473 Plat_L3 LINE - chr8:128988852-128989110 chr8 128988852 128989110 MIRb SINE - chr8:128990715-128990746 chr8 128990715 128990746 (TTA)n Simple_repeat + chr8:128991045-128991242 chr8 128991045 128991242 AluJr4 SINE - chr8:128991403-128991499 chr8 128991403 128991499 L2c LINE - chr8:128992133-128992427 chr8 128992133 128992427 AluJr SINE - chr8:128993375-128993394 chr8 128993375 128993394 (TG)n Simple_repeat + chr8:128993439-128993566 chr8 128993439 128993566 MIR3 SINE - chr8:128994241-128994411 chr8 128994241 128994411 MIR SINE + chr8:128994773-128994897 chr8 128994773 128994897 FLAM_C SINE + chr8:128994897-128994925 chr8 128994897 128994925 (TAAT)n Simple_repeat + chr8:128994969-128995133 chr8 128994969 128995133 L1ME4b LINE - chr8:128996122-128996422 chr8 128996122 128996422 AluSz SINE - chr8:128997069-128997191 chr8 128997069 128997191 (TTTC)n Simple_repeat + chr8:128997192-128997288 chr8 128997192 128997288 (CCTT)n Simple_repeat + chr8:128997288-128997577 chr8 128997288 128997577 AluSg4 SINE - chr8:128999490-128999579 chr8 128999490 128999579 MIR SINE - chr8:129000867-129000936 chr8 129000867 129000936 hAT-N1a_Mam DNA - chr8:129002030-129002263 chr8 129002030 129002263 MIRb SINE + chr8:129002638-129002678 chr8 129002638 129002678 A-rich Low_complexity + chr8:129004191-129004322 chr8 129004191 129004322 MIR3 SINE + chr8:129004322-129004344 chr8 129004322 129004344 (A)n Simple_repeat + chr8:129004350-129004634 chr8 129004350 129004634 AluSz6 SINE + chr8:129004650-129004782 chr8 129004650 129004782 FLAM_A SINE - chr8:129006009-129006068 chr8 129006009 129006068 MIRc SINE - chr8:129006066-129006171 chr8 129006066 129006171 L2b LINE - chr8:129006200-129006305 chr8 129006200 129006305 MIRb SINE - chr8:129007953-129008084 chr8 129007953 129008084 MIR SINE - chr8:129009042-129009179 chr8 129009042 129009179 MIRc SINE + chr8:129009290-129009586 chr8 129009290 129009586 AluSp SINE - chr8:129011376-129011540 chr8 129011376 129011540 U1 snRNA + chr8:129015620-129015878 chr8 129015620 129015878 AluJb SINE - chr8:129016765-129016881 chr8 129016765 129016881 MIR SINE + chr8:129017460-129017616 chr8 129017460 129017616 MER30 DNA + chr8:129018349-129018396 chr8 129018349 129018396 (AAT)n Simple_repeat + chr8:129022788-129022857 chr8 129022788 129022857 U4 snRNA - chr8:129022968-129025847 chr8 129022968 129025847 L2c LINE - chr8:129023519-129023891 chr8 129023519 129023891 MLT1A LTR + chr8:129023938-129024265 chr8 129023938 129024265 L3 LINE + chr8:129024298-129024377 chr8 129024298 129024377 MIRc SINE - chr8:129024593-129024787 chr8 129024593 129024787 MIRb SINE - chr8:129025008-129025164 chr8 129025008 129025164 MER5B DNA - chr8:129025366-129025580 chr8 129025366 129025580 MIR SINE + chr8:129026353-129026469 chr8 129026353 129026469 L2a LINE + chr8:129026502-129026591 chr8 129026502 129026591 MIR3 SINE + chr8:129027300-129027351 chr8 129027300 129027351 (ATTT)n Simple_repeat + chr8:129028277-129028535 chr8 129028277 129028535 AluJb SINE + chr8:129029159-129029280 chr8 129029159 129029280 FLAM_C SINE + chr8:129029295-129029382 chr8 129029295 129029382 MIR3 SINE - chr8:129030268-129030352 chr8 129030268 129030352 L1ME4c LINE + chr8:129031663-129031805 chr8 129031663 129031805 MER63B DNA - chr8:129034170-129034311 chr8 129034170 129034311 AluSz6 SINE + chr8:129034871-129034998 chr8 129034871 129034998 MIRc SINE + chr8:129036382-129036469 chr8 129036382 129036469 MIR3 SINE - chr8:129037123-129037244 chr8 129037123 129037244 AluJr4 SINE - chr8:129037999-129038179 chr8 129037999 129038179 MIRc SINE - chr8:129038542-129038576 chr8 129038542 129038576 (T)n Simple_repeat + chr8:129038653-129038843 chr8 129038653 129038843 MIRb SINE - chr8:129039903-129040037 chr8 129039903 129040037 L2b LINE + chr8:129040757-129040954 chr8 129040757 129040954 MIRc SINE + chr8:129042734-129042829 chr8 129042734 129042829 MIR SINE - chr8:129042869-129042981 chr8 129042869 129042981 L2c LINE + chr8:129042995-129043179 chr8 129042995 129043179 L2c LINE + chr8:129043904-129044125 chr8 129043904 129044125 MIR SINE - chr8:129044217-129044255 chr8 129044217 129044255 (TGA)n Simple_repeat + chr8:129045106-129045222 chr8 129045106 129045222 MLT1H2 LTR - chr8:129045222-129045278 chr8 129045222 129045278 (GTGCAGG)n Simple_repeat + chr8:129045557-129045597 chr8 129045557 129045597 (TG)n Simple_repeat + chr8:129046397-129046459 chr8 129046397 129046459 (CCT)n Simple_repeat + chr8:129047735-129047784 chr8 129047735 129047784 L2c LINE - chr8:129048349-129048593 chr8 129048349 129048593 MIR SINE + chr8:129050123-129050421 chr8 129050123 129050421 Charlie19a DNA - chr8:129051235-129051274 chr8 129051235 129051274 GA-rich Low_complexity + chr8:129055892-129055999 chr8 129055892 129055999 L1ME3G LINE - chr8:129056019-129056056 chr8 129056019 129056056 (AC)n Simple_repeat + chr8:129056704-129056812 chr8 129056704 129056812 MIR3 SINE - chr8:129056827-129056870 chr8 129056827 129056870 L2b LINE + chr8:129056917-129057023 chr8 129056917 129057023 MIRb SINE + chr8:129059891-129060220 chr8 129059891 129060220 L1ME4b LINE + chr8:129060011-129060142 chr8 129060011 129060142 L1MA8 LINE + chr8:129060357-129060519 chr8 129060357 129060519 L2a LINE + chr8:129060857-129061027 chr8 129060857 129061027 MIRb SINE + chr8:129062014-129062104 chr8 129062014 129062104 MIR SINE + chr8:129062472-129062505 chr8 129062472 129062505 (CCATC)n Simple_repeat + chr8:129062833-129062988 chr8 129062833 129062988 MIRb SINE + chr8:129063355-129063479 chr8 129063355 129063479 L2b LINE - chr8:129065367-129065550 chr8 129065367 129065550 MIRc SINE + chr8:129065601-129065739 chr8 129065601 129065739 (TA)n Simple_repeat + chr8:129066665-129066767 chr8 129066665 129066767 MIR3 SINE - chr8:129068332-129068519 chr8 129068332 129068519 MIR SINE + chr8:129068542-129068684 chr8 129068542 129068684 (ATATGC)n Simple_repeat + chr8:129068599-129068677 chr8 129068599 129068677 (TA)n Simple_repeat + chr8:129068924-129069050 chr8 129068924 129069050 MER5A DNA - chr8:129070624-129070657 chr8 129070624 129070657 (TG)n Simple_repeat + chr8:129070841-129070980 chr8 129070841 129070980 L1M5 LINE - chr8:129071448-129071533 chr8 129071448 129071533 MIRb SINE + chr8:129076725-129076837 chr8 129076725 129076837 MER5A DNA - chr8:129077218-129077358 chr8 129077218 129077358 MIR3 SINE - chr8:129079779-129079914 chr8 129079779 129079914 L2c LINE - chr8:129081500-129081536 chr8 129081500 129081536 (TCTTC)n Simple_repeat + chr8:129081773-129081844 chr8 129081773 129081844 MIRb SINE - chr8:129085592-129085638 chr8 129085592 129085638 (CTCC)n Simple_repeat + chr8:129087574-129087654 chr8 129087574 129087654 L2c LINE + chr8:129091215-129091267 chr8 129091215 129091267 (T)n Simple_repeat + chr8:129094594-129094727 chr8 129094594 129094727 MIRb SINE + chr8:129097745-129097815 chr8 129097745 129097815 MIRb SINE + chr8:129100704-129100750 chr8 129100704 129100750 MIRb SINE - chr8:129100712-129100754 chr8 129100712 129100754 L2d2 LINE - chr8:129101815-129101924 chr8 129101815 129101924 L2c LINE - chr8:129104027-129104081 chr8 129104027 129104081 MIRb SINE + chr8:129104653-129104703 chr8 129104653 129104703 MADE1 DNA + chr8:129105039-129105089 chr8 129105039 129105089 MADE1 DNA + chr8:129106189-129106231 chr8 129106189 129106231 (AATG)n Simple_repeat + chr8:129106518-129106551 chr8 129106518 129106551 (TAAATG)n Simple_repeat + chr8:129614092-129614103 chr8 129614092 129614103 (AT)n Simple_repeat + chr8:135807117-135807324 chr8 135807117 135807324 MIRb SINE - chr8:135807618-135807704 chr8 135807618 135807704 MER39 LTR - chr8:135812118-135812360 chr8 135812118 135812360 MIRb SINE - chr8:135814116-135814290 chr8 135814116 135814290 MER5A DNA + chr8:135815992-135816116 chr8 135815992 135816116 L2d2 LINE - chr8:135818344-135818384 chr8 135818344 135818384 (ACAT)n Simple_repeat + chr8:135820547-135820664 chr8 135820547 135820664 MIR3 SINE + chr8:135840507-135840616 chr8 135840507 135840616 CR1-1_Amn LINE - chr8:135842288-135842386 chr8 135842288 135842386 UCON8 DNA + chr8:13763416-13763446 chr8 13763416 13763446 (T)n Simple_repeat + chr8:138334406-138334433 chr8 138334406 138334433 (CT)n Simple_repeat + chr8:141531120-141531150 chr8 141531120 141531150 (CAAAA)n Simple_repeat + chr8:141532630-141532663 chr8 141532630 141532663 (A)n Simple_repeat + chr8:141532765-141532848 chr8 141532765 141532848 (AG)n Simple_repeat + chr8:141533494-141533533 chr8 141533494 141533533 A-rich Low_complexity + chr8:141538451-141538483 chr8 141538451 141538483 A-rich Low_complexity + chr8:141540228-141540273 chr8 141540228 141540273 (AC)n Simple_repeat + chr8:143738827-143739242 chr8 143738827 143739242 MSTB1 LTR - chr8:143739631-143740153 chr8 143739631 143740153 MLT1A LTR - chr8:143739805-143739929 chr8 143739805 143739929 FLAM_C SINE - chr8:143741132-143741176 chr8 143741132 143741176 MIRb SINE - chr8:143741696-143741736 chr8 143741696 143741736 (CCACCAC)n Simple_repeat + chr8:143741812-143742113 chr8 143741812 143742113 AluJr SINE - chr8:143744290-143744581 chr8 143744290 143744581 AluJr SINE + chr8:143745690-143745758 chr8 143745690 143745758 G-rich Low_complexity + chr8:143749738-143749800 chr8 143749738 143749800 MIR3 SINE + chr8:143750581-143750629 chr8 143750581 143750629 (GT)n Simple_repeat + chr8:146199652-146199808 chr8 146199652 146199808 FRAM SINE + chr8:146200227-146200499 chr8 146200227 146200499 AluSc SINE - chr8:146201219-146201252 chr8 146201219 146201252 A-rich Low_complexity + chr8:146204651-146204706 chr8 146204651 146204706 A-rich Low_complexity + chr8:146204927-146205211 chr8 146204927 146205211 AluSx1 SINE + chr8:146205211-146205263 chr8 146205211 146205263 (AAAAT)n Simple_repeat + chr8:146205597-146205640 chr8 146205597 146205640 HAL1ME LINE - chr8:146205652-146205966 chr8 146205652 146205966 AluSc SINE - chr8:146206798-146207098 chr8 146206798 146207098 AluSx SINE + chr8:146207880-146208216 chr8 146207880 146208216 AluJr SINE + chr8:146209536-146209897 chr8 146209536 146209897 THE1D LTR + chr8:146211343-146211410 chr8 146211343 146211410 Alu SINE - chr8:146211410-146211555 chr8 146211410 146211555 AluYi6 SINE - chr8:146213125-146213437 chr8 146213125 146213437 AluY SINE + chr8:146214202-146214472 chr8 146214202 146214472 AluSp SINE - chr8:146217465-146217758 chr8 146217465 146217758 AluY SINE + chr8:146217758-146217805 chr8 146217758 146217805 (AT)n Simple_repeat + chr8:146218062-146218171 chr8 146218062 146218171 MIR SINE + chr8:146221540-146222532 chr8 146221540 146222532 L1MD2 LINE - chr8:146221854-146221924 chr8 146221854 146221924 L1PB4 LINE - chr8:146223341-146223645 chr8 146223341 146223645 AluSz SINE - chr8:146224323-146224445 chr8 146224323 146224445 MIRb SINE + chr8:146224560-146224810 chr8 146224560 146224810 AluJr SINE + chr8:160332-160632 chr8 160332 160632 AluSq2 SINE + chr8:160912-161021 chr8 160912 161021 MER34-int LTR + chr8:17083523-17085740 chr8 17083523 17085740 Cheshire DNA - chr8:17083538-17083564 chr8 17083538 17083564 (T)n Simple_repeat + chr8:17085996-17086084 chr8 17085996 17086084 Tigger5b DNA + chr8:17086102-17086194 chr8 17086102 17086194 MER47C DNA - chr8:1710847-1710917 chr8 1710847 1710917 MIRc SINE - chr8:1711032-1711126 chr8 1711032 1711126 L2a LINE - chr8:23044839-23045148 chr8 23044839 23045148 AluSx1 SINE - chr8:23045568-23046829 chr8 23045568 23046829 MSTC LTR + chr8:23045751-23046157 chr8 23045751 23046157 MSTA LTR + chr8:23046248-23046670 chr8 23046248 23046670 MSTA LTR - chr8:24809495-24809533 chr8 24809495 24809533 tRNA-Gln-CAG tRNA + chr8:24810329-24810448 chr8 24810329 24810448 (TTC)n Simple_repeat + chr8:24810990-24811049 chr8 24810990 24811049 (TCTTCC)n Simple_repeat + chr8:24811049-24811061 chr8 24811049 24811061 (CCTTCT)n Simple_repeat + chr8:25365647-25365681 chr8 25365647 25365681 (T)n Simple_repeat + chr8:25366079-25366105 chr8 25366079 25366105 (T)n Simple_repeat + chr8:25366292-25366316 chr8 25366292 25366316 (T)n Simple_repeat + chr8:25367327-25367399 chr8 25367327 25367399 (TTTTTG)n Simple_repeat + chr8:25368351-25369710 chr8 25368351 25369710 L1ME1 LINE - chr8:26046822-26047367 chr8 26046822 26047367 MIRb SINE + chr8:26046874-26047176 chr8 26046874 26047176 AluSx1 SINE + chr8:27141576-27141687 chr8 27141576 27141687 L3 LINE + chr8:27141768-27141850 chr8 27141768 27141850 MIRb SINE - chr8:28912877-28912908 chr8 28912877 28912908 (CTCC)n Simple_repeat + chr8:28917020-28917086 chr8 28917020 28917086 L2d2 LINE - chr8:30602120-30602253 chr8 30602120 30602253 FLAM_C SINE - chr8:30602397-30602415 chr8 30602397 30602415 (GGA)n Simple_repeat + chr8:30602426-30602586 chr8 30602426 30602586 MIR SINE - chr8:30602561-30602938 chr8 30602561 30602938 L2 LINE - chr8:30603788-30603825 chr8 30603788 30603825 (TT)n Simple_repeat + chr8:30603977-30604374 chr8 30603977 30604374 L3b LINE - chr8:30604032-30604336 chr8 30604032 30604336 AluSx3 SINE - chr8:30604417-30604694 chr8 30604417 30604694 AluSc SINE + chr8:30605333-30605384 chr8 30605333 30605384 Alu SINE + chr8:30605404-30605435 chr8 30605404 30605435 (T)n Simple_repeat + chr8:30605640-30605803 chr8 30605640 30605803 AluSx3 SINE - chr8:30606004-30606431 chr8 30606004 30606431 Tigger13a DNA + chr8:30606058-30606357 chr8 30606058 30606357 AluSx1 SINE - chr8:30607706-30607987 chr8 30607706 30607987 AluJb SINE + chr8:30608007-30608304 chr8 30608007 30608304 AluY SINE + chr8:30608346-30608637 chr8 30608346 30608637 MER2 DNA + chr8:30608748-30608875 chr8 30608748 30608875 FLAM_C SINE + chr8:30609411-30609706 chr8 30609411 30609706 AluSc SINE - chr8:30609823-30610127 chr8 30609823 30610127 AluSz SINE - chr8:30610549-30610622 chr8 30610549 30610622 GA-rich Low_complexity + chr8:30610736-30611288 chr8 30610736 30611288 L1MB5 LINE - chr8:30610768-30611073 chr8 30610768 30611073 AluSx SINE - chr8:30611288-30611465 chr8 30611288 30611465 AluJr SINE - chr8:30611476-30611776 chr8 30611476 30611776 AluSc SINE + chr8:30612473-30612770 chr8 30612473 30612770 AluY SINE - chr8:30612775-30612924 chr8 30612775 30612924 AluJr SINE - chr8:30612995-30613298 chr8 30612995 30613298 AluJr SINE + chr8:30613540-30614097 chr8 30613540 30614097 AluSx1 SINE - chr8:30613664-30613961 chr8 30613664 30613961 AluSx1 SINE - chr8:30614555-30614686 chr8 30614555 30614686 AluSx3 SINE + chr8:30614785-30615094 chr8 30614785 30615094 AluSq2 SINE + chr8:30615095-30615397 chr8 30615095 30615397 AluSg4 SINE + chr8:30615403-30615712 chr8 30615403 30615712 AluYf1 SINE - chr8:30616211-30616384 chr8 30616211 30616384 Charlie19a DNA + chr8:30616389-30616709 chr8 30616389 30616709 AluY SINE - chr8:30617191-30617474 chr8 30617191 30617474 AluY SINE + chr8:30617476-30617530 chr8 30617476 30617530 (AAAAT)n Simple_repeat + chr8:30617571-30617876 chr8 30617571 30617876 AluSx1 SINE - chr8:30617904-30617961 chr8 30617904 30617961 (TA)n Simple_repeat + chr8:30617961-30618093 chr8 30617961 30618093 FLAM_A SINE - chr8:30618587-30618687 chr8 30618587 30618687 SVA_A Retroposon + chr8:30618765-30619038 chr8 30618765 30619038 AluSq2 SINE - chr8:30619135-30619240 chr8 30619135 30619240 FLAM_C SINE + chr8:30619578-30619889 chr8 30619578 30619889 AluJr SINE - chr8:30619899-30620209 chr8 30619899 30620209 AluSz SINE - chr8:30620393-30620654 chr8 30620393 30620654 AluJr SINE - chr8:30621224-30621511 chr8 30621224 30621511 AluSz SINE + chr8:30621813-30621985 chr8 30621813 30621985 AluSz6 SINE - chr8:30622017-30622267 chr8 30622017 30622267 L1M5 LINE + chr8:30622285-30622584 chr8 30622285 30622584 AluSc SINE + chr8:30622593-30622728 chr8 30622593 30622728 FLAM_C SINE - chr8:30622790-30623021 chr8 30622790 30623021 AluJb SINE - chr8:30623048-30623082 chr8 30623048 30623082 (TA)n Simple_repeat + chr8:30623083-30623241 chr8 30623083 30623241 AluSg4 SINE - chr8:30623241-30623544 chr8 30623241 30623544 AluSx1 SINE + chr8:30726256-30726338 chr8 30726256 30726338 L1MEc LINE + chr8:30726378-30726397 chr8 30726378 30726397 (T)n Simple_repeat + chr8:30739648-30739724 chr8 30739648 30739724 AluJr4 SINE - chr8:30745012-30745033 chr8 30745012 30745033 (TA)n Simple_repeat + chr8:30745318-30745389 chr8 30745318 30745389 (TA)n Simple_repeat + chr8:30747422-30747489 chr8 30747422 30747489 (TA)n Simple_repeat + chr8:32785297-32785950 chr8 32785297 32785950 LTR33 LTR + chr8:32785732-32785898 chr8 32785732 32785898 MER5B DNA - chr8:32786027-32786142 chr8 32786027 32786142 MIR SINE - chr8:32786176-32786337 chr8 32786176 32786337 MER5A1 DNA - chr8:32787491-32787565 chr8 32787491 32787565 (CTA)n Simple_repeat + chr8:32790449-32790580 chr8 32790449 32790580 MIRb SINE + chr8:32792467-32793537 chr8 32792467 32793537 L1PB1 LINE + chr8:32793127-32793186 chr8 32793127 32793186 (TA)n Simple_repeat + chr8:32794563-32794597 chr8 32794563 32794597 (ATTAA)n Simple_repeat + chr8:32811428-32812107 chr8 32811428 32812107 MLT1F1 LTR - chr8:32811812-32811952 chr8 32811812 32811952 FRAM SINE - chr8:32812665-32812710 chr8 32812665 32812710 A-rich Low_complexity + chr8:32813762-32813818 chr8 32813762 32813818 MER121B DNA - chr8:32814673-32814764 chr8 32814673 32814764 Charlie15a DNA + chr8:32815006-32815301 chr8 32815006 32815301 MLT1J LTR + chr8:32817331-32817631 chr8 32817331 32817631 AluSc8 SINE + chr8:32817881-32818163 chr8 32817881 32818163 AluJb SINE + chr8:32819053-32819120 chr8 32819053 32819120 L2a LINE - chr8:32819228-32819879 chr8 32819228 32819879 L1ME3C LINE + chr8:32819276-32819438 chr8 32819276 32819438 L1M5 LINE + chr8:32821233-32821391 chr8 32821233 32821391 L3 LINE + chr8:32821579-32821755 chr8 32821579 32821755 MIR3 SINE + chr8:32826004-32826182 chr8 32826004 32826182 LTR67B LTR - chr8:32826226-32826307 chr8 32826226 32826307 FRAM SINE - chr8:32826307-32826544 chr8 32826307 32826544 LTR67B LTR + chr8:32826592-32826880 chr8 32826592 32826880 AluJr SINE + chr8:32826944-32826997 chr8 32826944 32826997 Tigger14a DNA - chr8:32827348-32827506 chr8 32827348 32827506 MIRc SINE - chr8:32827664-32827694 chr8 32827664 32827694 (CATATA)n Simple_repeat + chr8:32828532-32828577 chr8 32828532 32828577 (TAA)n Simple_repeat + chr8:32829145-32829230 chr8 32829145 32829230 FLAM_C SINE + chr8:32832840-32833220 chr8 32832840 32833220 L2d LINE + chr8:32832944-32833007 chr8 32832944 32833007 MIRb SINE + chr8:32834964-32835004 chr8 32834964 32835004 (GT)n Simple_repeat + chr8:32835015-32835167 chr8 32835015 32835167 (TA)n Simple_repeat + chr8:32835118-32835186 chr8 32835118 32835186 (AC)n Simple_repeat + chr8:32838349-32838373 chr8 32838349 32838373 (TC)n Simple_repeat + chr8:32838372-32838477 chr8 32838372 32838477 (TA)n Simple_repeat + chr8:32838540-32838627 chr8 32838540 32838627 L2d2 LINE + chr8:32839797-32840108 chr8 32839797 32840108 AluJr SINE + chr8:32841087-32841752 chr8 32841087 32841752 L1MA9 LINE + chr8:32841098-32841391 chr8 32841098 32841391 AluSg SINE + chr8:32841963-32842271 chr8 32841963 32842271 AluY SINE + chr8:32854766-32854904 chr8 32854766 32854904 L1MEh LINE - chr8:32858010-32858086 chr8 32858010 32858086 MIRb SINE - chr8:32864690-32864749 chr8 32864690 32864749 MER5B DNA - chr8:32864749-32864802 chr8 32864749 32864802 (TATA)n Simple_repeat + chr8:32864807-32864907 chr8 32864807 32864907 MER5B DNA + chr8:32867649-32867893 chr8 32867649 32867893 L1MEg LINE - chr8:32867893-32868133 chr8 32867893 32868133 AluSx SINE + chr8:32871529-32871596 chr8 32871529 32871596 tRNA-Leu-TTA(m) tRNA + chr8:32872645-32872717 chr8 32872645 32872717 tRNA-Gln-CAA_ tRNA - chr8:32873452-32873776 chr8 32873452 32873776 MER6A DNA - chr8:32873683-32873719 chr8 32873683 32873719 U2 snRNA + chr8:32873761-32873813 chr8 32873761 32873813 THE1B LTR - chr8:32876174-32876372 chr8 32876174 32876372 L1MB2 LINE + chr8:32887959-32888049 chr8 32887959 32888049 L1M2 LINE + chr8:32889912-32890132 chr8 32889912 32890132 AluSx4 SINE + chr8:32892584-32892750 chr8 32892584 32892750 FAM SINE - chr8:32893158-32893193 chr8 32893158 32893193 A-rich Low_complexity + chr8:32893668-32893698 chr8 32893668 32893698 (GT)n Simple_repeat + chr8:32895348-32895481 chr8 32895348 32895481 L2a LINE + chr8:32897796-32897811 chr8 32897796 32897811 AluSp SINE + chr8:32897811-32897849 chr8 32897811 32897849 AluYj4 SINE + chr8:32898160-32898243 chr8 32898160 32898243 L1MC3 LINE + chr8:32900303-32900370 chr8 32900303 32900370 MIRc SINE - chr8:32901237-32901259 chr8 32901237 32901259 (CA)n Simple_repeat + chr8:32901859-32901996 chr8 32901859 32901996 MIR SINE - chr8:33227008-33227083 chr8 33227008 33227083 MLT1A0 LTR + chr8:37962078-37962217 chr8 37962078 37962217 Charlie2a DNA - chr8:37962356-37962448 chr8 37962356 37962448 L2 LINE + chr8:37999747-37999875 chr8 37999747 37999875 FLAM_A SINE - chr8:38074984-38075005 chr8 38074984 38075005 (CA)n Simple_repeat + chr8:41405255-41405339 chr8 41405255 41405339 Tigger22N1 DNA + chr8:420353-420679 chr8 420353 420679 AluSz SINE - chr8:421433-421598 chr8 421433 421598 LTR84b LTR - chr8:421661-421756 chr8 421661 421756 LTR84a LTR - chr8:42189718-42189973 chr8 42189718 42189973 MER103C DNA - chr8:421953-422659 chr8 421953 422659 L1M4 LINE - chr8:422462-422506 chr8 422462 422506 MER2B DNA - chr8:427499-427605 chr8 427499 427605 L1MC5 LINE + chr8:427628-427895 chr8 427628 427895 MER58B DNA - chr8:428726-429009 chr8 428726 429009 AluJo SINE + chr8:42979074-42979245 chr8 42979074 42979245 L1M1 LINE - chr8:42979262-42979472 chr8 42979262 42979472 AluSg4 SINE - chr8:42979609-42979659 chr8 42979609 42979659 5S rRNA - chr8:42979662-42980350 chr8 42979662 42980350 LTR76 LTR - chr8:42980427-42980747 chr8 42980427 42980747 AluY SINE - chr8:42980747-42980765 chr8 42980747 42980765 L1M2 LINE - chr8:429823-430427 chr8 429823 430427 LTR24 LTR - chr8:42984000-42984253 chr8 42984000 42984253 L1M3 LINE - chr8:42984254-42988041 chr8 42984254 42988041 L1M5 LINE - chr8:42984274-42984801 chr8 42984274 42984801 L1M4 LINE - chr8:42984944-42985415 chr8 42984944 42985415 L2 LINE + chr8:42985153-42985288 chr8 42985153 42985288 L1M4 LINE + chr8:42985468-42986567 chr8 42985468 42986567 L1ME2 LINE - chr8:42985704-42986092 chr8 42985704 42986092 MLT1A1 LTR - chr8:42987157-42987175 chr8 42987157 42987175 L1M5 LINE - chr8:430210-430383 chr8 430210 430383 L1PA17 LINE - chr8:431852-432019 chr8 431852 432019 FRAM SINE + chr8:434678-434746 chr8 434678 434746 MIRb SINE + chr8:438885-438940 chr8 438885 438940 AluYk3 SINE - chr8:60033778-60033798 chr8 60033778 60033798 (AAT)n Simple_repeat + chr8:6263201-6263250 chr8 6263201 6263250 MIRb SINE + chr8:6564127-6564156 chr8 6564127 6564156 A-rich Low_complexity + chr8:67025601-67025694 chr8 67025601 67025694 tRNA-Tyr-TAC tRNA + chr8:67835849-67836140 chr8 67835849 67836140 AluSx1 SINE + chr8:67836579-67836886 chr8 67836579 67836886 AluSg7 SINE + chr8:7006488-7006605 chr8 7006488 7006605 MER58A DNA - chr8:7007904-7017417 chr8 7007904 7017417 L2b LINE + chr8:7008135-7008440 chr8 7008135 7008440 AluJr SINE + chr8:7010301-7017357 chr8 7010301 7017357 HERVK11-int LTR - chr8:7084204-7084513 chr8 7084204 7084513 AluJb SINE - chr8:7087045-7087145 chr8 7087045 7087145 L2d LINE + chr8:7089824-7089879 chr8 7089824 7089879 GA-rich Low_complexity + chr8:7090357-7090437 chr8 7090357 7090437 MER5A DNA + chr8:7094541-7094630 chr8 7094541 7094630 MIR3 SINE + chr8:70952501-70952551 chr8 70952501 70952551 GA-rich Low_complexity + chr8:7095615-7095677 chr8 7095615 7095677 (TA)n Simple_repeat + chr8:70960176-70960311 chr8 70960176 70960311 MIRb SINE - chr8:70961881-70962185 chr8 70961881 70962185 AluSx SINE - chr8:70962225-70962406 chr8 70962225 70962406 MIR SINE + chr8:70962867-70963181 chr8 70962867 70963181 AluJb SINE - chr8:70963192-70963220 chr8 70963192 70963220 (TTTA)n Simple_repeat + chr8:70963241-70963408 chr8 70963241 70963408 AluJb SINE - chr8:70963472-70963600 chr8 70963472 70963600 AluJo SINE + chr8:7097867-7097913 chr8 7097867 7097913 (TCTTCA)n Simple_repeat + chr8:7102774-7102922 chr8 7102774 7102922 Kanga1d DNA + chr8:7103473-7103561 chr8 7103473 7103561 MER5B DNA + chr8:7112995-7113024 chr8 7112995 7113024 (AAAAC)n Simple_repeat + chr8:7114345-7114364 chr8 7114345 7114364 (TG)n Simple_repeat + chr8:7114570-7114609 chr8 7114570 7114609 G-rich Low_complexity + chr8:7121967-7121986 chr8 7121967 7121986 (TG)n Simple_repeat + chr8:7122192-7122231 chr8 7122192 7122231 G-rich Low_complexity + chr8:7129589-7129608 chr8 7129589 7129608 (TG)n Simple_repeat + chr8:7129814-7129853 chr8 7129814 7129853 G-rich Low_complexity + chr8:7137436-7137475 chr8 7137436 7137475 G-rich Low_complexity + chr8:7151106-7151135 chr8 7151106 7151135 (AAAAC)n Simple_repeat + chr8:7152455-7152474 chr8 7152455 7152474 (TG)n Simple_repeat + chr8:7152680-7152719 chr8 7152680 7152719 G-rich Low_complexity + chr8:7191535-7191618 chr8 7191535 7191618 (CACA)n Simple_repeat + chr8:7209354-7209431 chr8 7209354 7209431 (ATTGAT)n Simple_repeat + chr8:7209362-7209407 chr8 7209362 7209407 (TTA)n Simple_repeat + chr8:7211019-7211074 chr8 7211019 7211074 L2 LINE + chr8:7212159-7212209 chr8 7212159 7212209 (TAA)n Simple_repeat + chr8:7244811-7244842 chr8 7244811 7244842 (T)n Simple_repeat + chr8:7247999-7248062 chr8 7247999 7248062 A-rich Low_complexity + chr8:7248856-7248887 chr8 7248856 7248887 G-rich Low_complexity + chr8:7249836-7249942 chr8 7249836 7249942 GA-rich Low_complexity + chr8:7249943-7250033 chr8 7249943 7250033 5S rRNA + chr8:7250119-7250161 chr8 7250119 7250161 GA-rich Low_complexity + chr8:7252370-7252468 chr8 7252370 7252468 MER45R DNA + chr8:72587171-72587622 chr8 72587171 72587622 LTR7 LTR + chr8:72587630-72592895 chr8 72587630 72592895 HERVH-int LTR + chr8:72593173-72593523 chr8 72593173 72593523 MER1B DNA + chr8:72593597-72594190 chr8 72593597 72594190 L1ME3Cz LINE - chr8:72594205-72594272 chr8 72594205 72594272 (TA)n Simple_repeat + chr8:72594327-72595072 chr8 72594327 72595072 L1MEi LINE - chr8:72596419-72596692 chr8 72596419 72596692 L2b LINE + chr8:72596699-72596959 chr8 72596699 72596959 L1P4 LINE - chr8:72596960-72597485 chr8 72596960 72597485 L1ME2z LINE + chr8:72599040-72604834 chr8 72599040 72604834 MIRb SINE + chr8:72599144-72599450 chr8 72599144 72599450 AluSz SINE + chr8:72599450-72599568 chr8 72599450 72599568 MIRb SINE + chr8:72599650-72599756 chr8 72599650 72599756 MER5A1 DNA - chr8:72601065-72604365 chr8 72601065 72604365 L1MC5 LINE - chr8:72602545-72602758 chr8 72602545 72602758 MER30 DNA - chr8:72603053-72603551 chr8 72603053 72603551 MLT1D LTR - chr8:72603673-72603872 chr8 72603673 72603872 MER107 DNA + chr8:72606206-72606459 chr8 72606206 72606459 MamGypLTR1b LTR - chr8:72606903-72607029 chr8 72606903 72607029 Kanga1d DNA - chr8:72607027-72607329 chr8 72607027 72607329 Kanga1c DNA - chr8:72607354-72607571 chr8 72607354 72607571 L2c LINE + chr8:72608825-72609899 chr8 72608825 72609899 MER11C LTR - chr8:72610642-72610821 chr8 72610642 72610821 ERV3-16A3_I-int LTR + chr8:72610843-72615297 chr8 72610843 72615297 L1ME3A LINE + chr8:72611250-72611463 chr8 72611250 72611463 L1ME3E LINE + chr8:72611503-72611594 chr8 72611503 72611594 L1MA7 LINE + chr8:72612412-72612682 chr8 72612412 72612682 AluJr SINE + chr8:72613033-72613133 chr8 72613033 72613133 MIRb SINE + chr8:72613176-72613841 chr8 72613176 72613841 Charlie29a DNA - chr8:72614866-72615159 chr8 72614866 72615159 AluSx1 SINE - chr8:72615342-72615465 chr8 72615342 72615465 MIRb SINE + chr8:72615581-72615893 chr8 72615581 72615893 L4_A_Mam LINE + chr8:72615918-72615951 chr8 72615918 72615951 (TTGTTT)n Simple_repeat + chr8:72616574-72616618 chr8 72616574 72616618 (ATTTTGT)n Simple_repeat + chr8:7269814-7269886 chr8 7269814 7269886 MADE1 DNA + chr8:7276243-7276275 chr8 7276243 7276275 (TTAT)n Simple_repeat + chr8:7290465-7290598 chr8 7290465 7290598 MIRc SINE + chr8:7291495-7291521 chr8 7291495 7291521 (ATG)n Simple_repeat + chr8:7291521-7291550 chr8 7291521 7291550 (ATC)n Simple_repeat + chr8:7292249-7292334 chr8 7292249 7292334 L2d2 LINE + chr8:7298151-7298240 chr8 7298151 7298240 LTR104_Mam LTR + chr8:7299976-7300044 chr8 7299976 7300044 (CTTC)n Simple_repeat + chr8:7325276-7325304 chr8 7325276 7325304 (TC)n Simple_repeat + chr8:7332857-7332919 chr8 7332857 7332919 Plat_L3 LINE + chr8:7337916-7337939 chr8 7337916 7337939 L1M5 LINE + chr8:7337939-7337971 chr8 7337939 7337971 (GA)n Simple_repeat + chr8:7344226-7344274 chr8 7344226 7344274 MIRb SINE + chr8:7352995-7353013 chr8 7352995 7353013 (A)n Simple_repeat + chr8:7353013-7353056 chr8 7353013 7353056 L1PREC2 LINE + chr8:7366898-7366972 chr8 7366898 7366972 L2c LINE + chr8:7367035-7367167 chr8 7367035 7367167 MIR3 SINE + chr8:7367671-7367700 chr8 7367671 7367700 A-rich Low_complexity + chr8:7368151-7368224 chr8 7368151 7368224 hAT-1_Mam DNA + chr8:7382784-7382837 chr8 7382784 7382837 (TG)n Simple_repeat + chr8:7385469-7385505 chr8 7385469 7385505 (TTTGT)n Simple_repeat + chr8:73960389-73960697 chr8 73960389 73960697 AluJb SINE - chr8:73960719-73961059 chr8 73960719 73961059 L1MD2 LINE - chr8:73961057-73962929 chr8 73961057 73962929 L1M4 LINE + chr8:73962941-73963132 chr8 73962941 73963132 MER58A DNA - chr8:73964001-73964055 chr8 73964001 73964055 (AC)n Simple_repeat + chr8:73964313-73964370 chr8 73964313 73964370 MIRb SINE - chr8:73965928-73976392 chr8 73965928 73976392 HAL1ME LINE - chr8:73966229-73976049 chr8 73966229 73976049 HAL1 LINE - chr8:73974908-73975345 chr8 73974908 73975345 MLT1A LTR + chr8:73975114-73975138 chr8 73975114 73975138 (TC)n Simple_repeat + chr8:7400050-7400086 chr8 7400050 7400086 (TTTGT)n Simple_repeat + chr8:7401260-7401285 chr8 7401260 7401285 (CTC)n Simple_repeat + chr8:7409400-7409439 chr8 7409400 7409439 (CACCCC)n Simple_repeat + chr8:7409645-7409664 chr8 7409645 7409664 (AC)n Simple_repeat + chr8:74199641-74199679 chr8 74199641 74199679 L2a LINE - chr8:7432589-7432608 chr8 7432589 7432608 (AC)n Simple_repeat + chr8:7439992-7440030 chr8 7439992 7440030 (CACCCC)n Simple_repeat + chr8:7440236-7440255 chr8 7440236 7440255 (AC)n Simple_repeat + chr8:7441575-7441604 chr8 7441575 7441604 (TTTTG)n Simple_repeat + chr8:7458804-7458904 chr8 7458804 7458904 L1M4 LINE + chr8:7458908-7458976 chr8 7458908 7458976 (AT)n Simple_repeat + chr8:7464710-7464763 chr8 7464710 7464763 (TCTCTC)n Simple_repeat + chr8:7469742-7469990 chr8 7469742 7469990 MIR SINE + chr8:7470073-7470376 chr8 7470073 7470376 AluJb SINE + chr8:7471208-7471240 chr8 7471208 7471240 G-rich Low_complexity + chr8:7471674-7471905 chr8 7471674 7471905 MER20 DNA - chr8:7471934-7472121 chr8 7471934 7472121 MIR SINE + chr8:7472740-7473342 chr8 7472740 7473342 ERVL-B4-int LTR - chr8:7473351-7473482 chr8 7473351 7473482 MIR SINE + chr8:7473567-7473680 chr8 7473567 7473680 L2d LINE - chr8:7474162-7474603 chr8 7474162 7474603 L2b LINE + chr8:7524657-7524966 chr8 7524657 7524966 AluSq2 SINE + chr8:7525663-7525850 chr8 7525663 7525850 MER53 DNA + chr8:7526392-7526539 chr8 7526392 7526539 MIRc SINE - chr8:7527229-7527513 chr8 7527229 7527513 L1PA8 LINE + chr8:7530158-7530382 chr8 7530158 7530382 MER58A DNA - chr8:7530965-7531275 chr8 7530965 7531275 AluJo SINE + chr8:7531663-7531972 chr8 7531663 7531972 AluSx SINE - chr8:7532204-7532411 chr8 7532204 7532411 AluSz SINE + chr8:7534269-7534498 chr8 7534269 7534498 MER20 DNA + chr8:7535803-7536111 chr8 7535803 7536111 AluJb SINE - chr8:7535966-7535991 chr8 7535966 7535991 (T)n Simple_repeat + chr8:7539489-7539602 chr8 7539489 7539602 L2d LINE + chr8:7539688-7539819 chr8 7539688 7539819 MIR SINE - chr8:7541053-7541237 chr8 7541053 7541237 MIR SINE - chr8:7541266-7541497 chr8 7541266 7541497 MER20 DNA + chr8:7542800-7543108 chr8 7542800 7543108 AluJb SINE - chr8:7542963-7542988 chr8 7542963 7542988 (T)n Simple_repeat + chr8:7543191-7543439 chr8 7543191 7543439 MIR SINE - chr8:7545615-7545715 chr8 7545615 7545715 L2d LINE + chr8:7548393-7548448 chr8 7548393 7548448 GA-rich Low_complexity + chr8:7548913-7548993 chr8 7548913 7548993 MER5A DNA + chr8:7552866-7552989 chr8 7552866 7552989 LTR12C LTR + chr8:7553097-7553186 chr8 7553097 7553186 MIR3 SINE + chr8:7553915-7553940 chr8 7553915 7553940 (A)n Simple_repeat + chr8:7554236-7554336 chr8 7554236 7554336 L1M4 LINE - chr8:7556411-7556457 chr8 7556411 7556457 (TCTTCA)n Simple_repeat + chr8:7562018-7562106 chr8 7562018 7562106 MER5B DNA + chr8:7571535-7571564 chr8 7571535 7571564 (AAAAC)n Simple_repeat + chr8:7572884-7572903 chr8 7572884 7572903 (TG)n Simple_repeat + chr8:7579181-7579210 chr8 7579181 7579210 (AAAAC)n Simple_repeat + chr8:7588405-7588444 chr8 7588405 7588444 G-rich Low_complexity + chr8:7596053-7596092 chr8 7596053 7596092 G-rich Low_complexity + chr8:7603700-7603739 chr8 7603700 7603739 G-rich Low_complexity + chr8:7611348-7611387 chr8 7611348 7611387 G-rich Low_complexity + chr8:76127634-76127666 chr8 76127634 76127666 (ATATCC)n Simple_repeat + chr8:7618771-7618790 chr8 7618771 7618790 (TG)n Simple_repeat + chr8:7618996-7619035 chr8 7618996 7619035 G-rich Low_complexity + chr8:7625069-7625098 chr8 7625069 7625098 (AAAAC)n Simple_repeat + chr8:7626418-7626437 chr8 7626418 7626437 (TG)n Simple_repeat + chr8:7626643-7626682 chr8 7626643 7626682 G-rich Low_complexity + chr8:7634799-7634824 chr8 7634799 7634824 (GGA)n Simple_repeat + chr8:7635998-7636034 chr8 7635998 7636034 (AACAA)n Simple_repeat + chr8:7650551-7650587 chr8 7650551 7650587 (AACAA)n Simple_repeat + chr8:7653219-7653272 chr8 7653219 7653272 (CA)n Simple_repeat + chr8:7667849-7667922 chr8 7667849 7667922 hAT-1_Mam DNA - chr8:7668373-7668403 chr8 7668373 7668403 (T)n Simple_repeat + chr8:7669102-7669176 chr8 7669102 7669176 L2c LINE - chr8:7673549-7673592 chr8 7673549 7673592 L1PREC2 LINE - chr8:7682328-7682376 chr8 7682328 7682376 MIRb SINE - chr8:7688614-7688648 chr8 7688614 7688648 (TC)n Simple_repeat + chr8:7693677-7693739 chr8 7693677 7693739 Plat_L3 LINE - chr8:7701289-7701317 chr8 7701289 7701317 GA-rich Low_complexity + chr8:7728354-7728443 chr8 7728354 7728443 LTR104_Mam LTR - chr8:7734261-7734346 chr8 7734261 7734346 L2d2 LINE - chr8:7735056-7735100 chr8 7735056 7735100 (ATCATG)n Simple_repeat + chr8:7756728-7756800 chr8 7756728 7756800 MADE1 DNA - chr8:7774483-7774581 chr8 7774483 7774581 MER45R DNA - chr8:7776850-7776920 chr8 7776850 7776920 LTR13 LTR + chr8:7776915-7777005 chr8 7776915 7777005 5S rRNA - chr8:7777898-7777929 chr8 7777898 7777929 G-rich Low_complexity + chr8:7778061-7778092 chr8 7778061 7778092 (CTCCC)n Simple_repeat + chr8:7778918-7778949 chr8 7778918 7778949 (TTTCT)n Simple_repeat + chr8:7782100-7782141 chr8 7782100 7782141 (AACA)n Simple_repeat + chr8:7813203-7813253 chr8 7813203 7813253 (ATT)n Simple_repeat + chr8:7814337-7814405 chr8 7814337 7814405 L2 LINE - chr8:7816025-7816054 chr8 7816025 7816054 (AAT)n Simple_repeat + chr8:7817745-7817791 chr8 7817745 7817791 (ATT)n Simple_repeat + chr8:7833795-7833880 chr8 7833795 7833880 (GTGT)n Simple_repeat + chr8:7838459-7838510 chr8 7838459 7838510 (GTGT)n Simple_repeat + chr8:7839310-7839407 chr8 7839310 7839407 L1M3 LINE + chr8:7839639-7839675 chr8 7839639 7839675 (GTAT)n Simple_repeat + chr8:7841922-7841999 chr8 7841922 7841999 (GT)n Simple_repeat + chr8:7843865-7843996 chr8 7843865 7843996 (AAT)n Simple_repeat + chr8:7848598-7848653 chr8 7848598 7848653 (TTTC)n Simple_repeat + chr8:7856854-7856991 chr8 7856854 7856991 MIRc SINE + chr8:7857284-7857312 chr8 7857284 7857312 (CA)n Simple_repeat + chr8:7857593-7857709 chr8 7857593 7857709 L2d2 LINE + chr8:7865635-7865738 chr8 7865635 7865738 (TTA)n Simple_repeat + chr8:7872935-7872954 chr8 7872935 7872954 (AC)n Simple_repeat + chr8:7874274-7874303 chr8 7874274 7874303 (TTTTG)n Simple_repeat + chr8:7880338-7880367 chr8 7880338 7880367 (C)n Simple_repeat + chr8:7880581-7880600 chr8 7880581 7880600 (AC)n Simple_repeat + chr8:7887986-7888015 chr8 7887986 7888015 (C)n Simple_repeat + chr8:7888229-7888248 chr8 7888229 7888248 (AC)n Simple_repeat + chr8:7889567-7889596 chr8 7889567 7889596 (TTTTG)n Simple_repeat + chr8:7906801-7906901 chr8 7906801 7906901 L1M4 LINE + chr8:7906911-7906957 chr8 7906911 7906957 (AT)n Simple_repeat + chr8:7912136-7912237 chr8 7912136 7912237 MER5A DNA - chr8:7912698-7912751 chr8 7912698 7912751 (TCTCTC)n Simple_repeat + chr8:7917713-7917974 chr8 7917713 7917974 MIR SINE + chr8:7918057-7918359 chr8 7918057 7918359 AluJb SINE + chr8:7918359-7918381 chr8 7918359 7918381 (GA)n Simple_repeat + chr8:7919675-7919863 chr8 7919675 7919863 MER20 DNA - chr8:7919935-7920122 chr8 7919935 7920122 MIR SINE + chr8:7921352-7921483 chr8 7921352 7921483 MIR SINE + chr8:7921572-7921672 chr8 7921572 7921672 L2d LINE - chr8:7922163-7922604 chr8 7922163 7922604 L2b LINE + chr8:7924729-7924973 chr8 7924729 7924973 MIR SINE + chr8:7925055-7925375 chr8 7925055 7925375 AluJb SINE + chr8:7926686-7926872 chr8 7926686 7926872 MER20 DNA - chr8:7929212-7929521 chr8 7929212 7929521 AluSx SINE + chr8:7935348-7935373 chr8 7935348 7935373 (T)n Simple_repeat + chr8:7949325-7949345 chr8 7949325 7949345 (A)n Simple_repeat + chr8:7954654-7954689 chr8 7954654 7954689 (AC)n Simple_repeat + chr8:7956541-7956575 chr8 7956541 7956575 (T)n Simple_repeat + chr8:80701010-80701252 chr8 80701010 80701252 MIR SINE - chr8:8096846-8096943 chr8 8096846 8096943 MIRb SINE + chr8:86368820-86368845 chr8 86368820 86368845 (AG)n Simple_repeat + chr8:89343239-89343257 chr8 89343239 89343257 (T)n Simple_repeat + chr8:89349896-89349919 chr8 89349896 89349919 (ATAC)n Simple_repeat + chr8:89351159-89351193 chr8 89351159 89351193 (TGTATG)n Simple_repeat + chr8:89530546-89530561 chr8 89530546 89530561 (AT)n Simple_repeat + chr8:90603078-90603161 chr8 90603078 90603161 L2c LINE + chr8:90613213-90613264 chr8 90613213 90613264 A-rich Low_complexity + chr8:90622724-90622780 chr8 90622724 90622780 L2c LINE - chr8:90623267-90623324 chr8 90623267 90623324 MamTip2 DNA + chr8:90627481-90627608 chr8 90627481 90627608 MLT1N2 LTR + chr8:90628880-90628984 chr8 90628880 90628984 L2c LINE + chr8:90634406-90634450 chr8 90634406 90634450 (TATTAA)n Simple_repeat + chr8:90634674-90634735 chr8 90634674 90634735 Tigger10 DNA + chr8:90634750-90634823 chr8 90634750 90634823 Tigger10 DNA - chr8:90634930-90635021 chr8 90634930 90635021 MER53 DNA + chr8:90638600-90638729 chr8 90638600 90638729 MIR SINE - chr8:90639362-90639440 chr8 90639362 90639440 MIRb SINE + chr8:90640848-90640919 chr8 90640848 90640919 L1MC5a LINE - chr8:90640984-90641044 chr8 90640984 90641044 MIR SINE + chr8:90642359-90642442 chr8 90642359 90642442 MIR SINE - chr8:90642798-90642822 chr8 90642798 90642822 (TTCA)n Simple_repeat + chr8:90643413-90643513 chr8 90643413 90643513 X7A_LINE LINE - chr8:90648214-90648274 chr8 90648214 90648274 MER81 DNA + chr8:90648850-90648947 chr8 90648850 90648947 L1MB8 LINE + chr8:90649566-90649594 chr8 90649566 90649594 (AT)n Simple_repeat + chr8:90651162-90651190 chr8 90651162 90651190 (AT)n Simple_repeat + chr8:90651472-90651532 chr8 90651472 90651532 Charlie15a DNA - chr8:90657656-90657751 chr8 90657656 90657751 MIRc SINE + chr8:90660734-90660805 chr8 90660734 90660805 L2b LINE - chr8:90676874-90676917 chr8 90676874 90676917 (ATCTC)n Simple_repeat + chr8:90678196-90678248 chr8 90678196 90678248 L2a LINE - chr8:90680309-90680365 chr8 90680309 90680365 (AATAA)n Simple_repeat + chr8:90684128-90684180 chr8 90684128 90684180 (ATA)n Simple_repeat + chr8:90685174-90685264 chr8 90685174 90685264 L2 LINE - chr8:90696932-90697002 chr8 90696932 90697002 MER4C LTR - chr8:90698077-90698114 chr8 90698077 90698114 (TGTG)n Simple_repeat + chr8:90698801-90698837 chr8 90698801 90698837 (TGTTTT)n Simple_repeat + chr8:90701154-90701232 chr8 90701154 90701232 FLAM_A SINE + chr8:90703427-90703489 chr8 90703427 90703489 L1MA8 LINE + chr8:90707354-90707399 chr8 90707354 90707399 (TG)n Simple_repeat + chr8:90708077-90708166 chr8 90708077 90708166 L1ME4a LINE + chr8:90708200-90708223 chr8 90708200 90708223 (TC)n Simple_repeat + chr8:90728799-90728842 chr8 90728799 90728842 (CT)n Simple_repeat + chr8:90729811-90729956 chr8 90729811 90729956 MLT1H LTR - chr8:90730959-90730992 chr8 90730959 90730992 (TTGC)n Simple_repeat + chr8:90731326-90731543 chr8 90731326 90731543 LTR104_Mam LTR + chr8:90732448-90732494 chr8 90732448 90732494 (TA)n Simple_repeat + chr8:90732527-90732580 chr8 90732527 90732580 (TCTATG)n Simple_repeat + chr8:90735279-90735376 chr8 90735279 90735376 MIR SINE + chr8:90736215-90736313 chr8 90736215 90736313 MIRb SINE + chr8:90736672-90737202 chr8 90736672 90737202 MLT1D LTR - chr8:90737242-90737433 chr8 90737242 90737433 MIRb SINE - chr8:90737462-90737549 chr8 90737462 90737549 Charlie19a DNA - chr8:90739300-90739355 chr8 90739300 90739355 MIRc SINE - chr8:90741639-90741673 chr8 90741639 90741673 (GT)n Simple_repeat + chr8:90742356-90742469 chr8 90742356 90742469 MIRb SINE + chr8:90742563-90742689 chr8 90742563 90742689 L2c LINE + chr8:90767139-90767205 chr8 90767139 90767205 MER103C DNA - chr8:92081091-92081826 chr8 92081091 92081826 L1M6 LINE - chr8:98742263-98742396 chr8 98742263 98742396 Chap1a_Mam DNA + chr8:98742418-98742513 chr8 98742418 98742513 L1ME3F LINE - chr8:99052213-99052282 chr8 99052213 99052282 MER20 DNA + chr8:99058874-99058946 chr8 99058874 99058946 MIR SINE - chr8:99061175-99061193 chr8 99061175 99061193 (A)n Simple_repeat + chr9:102732809-102732889 chr9 102732809 102732889 MER5A DNA - chr9:102733317-102734731 chr9 102733317 102734731 Tigger22N1 DNA - chr9:102733613-102733802 chr9 102733613 102733802 MER112 DNA - chr9:102733814-102734005 chr9 102733814 102734005 MIRb SINE - chr9:102734020-102734286 chr9 102734020 102734286 AluJr SINE + chr9:102735523-102735590 chr9 102735523 102735590 MIR3 SINE - chr9:104329225-104329266 chr9 104329225 104329266 MIRb SINE - chr9:104329605-104329632 chr9 104329605 104329632 (TGTC)n Simple_repeat + chr9:106904266-106904766 chr9 106904266 106904766 MER67A LTR - chr9:106904828-106904900 chr9 106904828 106904900 MER70B LTR + chr9:106905749-106906272 chr9 106905749 106906272 L1MA9 LINE - chr9:108005453-108005577 chr9 108005453 108005577 MIRb SINE - chr9:108006068-108006166 chr9 108006068 108006166 L2a LINE + chr9:108006279-108006382 chr9 108006279 108006382 MIRb SINE + chr9:109623208-109623344 chr9 109623208 109623344 (CTCCTTT)n Simple_repeat + chr9:109624601-109624634 chr9 109624601 109624634 G-rich Low_complexity + chr9:109624790-109624912 chr9 109624790 109624912 (CTC)n Simple_repeat + chr9:109625104-109625140 chr9 109625104 109625140 (TTTC)n Simple_repeat + chr9:114980380-114980425 chr9 114980380 114980425 GA-rich Low_complexity + chr9:115133926-115133949 chr9 115133926 115133949 (T)n Simple_repeat + chr9:115141092-115141183 chr9 115141092 115141183 MER102a DNA - chr9:115760756-115761001 chr9 115760756 115761001 Tigger7 DNA + chr9:115761019-115761099 chr9 115761019 115761099 Tigger7 DNA + chr9:115762322-115762425 chr9 115762322 115762425 MER21C LTR - chr9:115767961-115768175 chr9 115767961 115768175 L2b LINE + chr9:115770002-115770170 chr9 115770002 115770170 MIR3 SINE - chr9:115772217-115772319 chr9 115772217 115772319 Tigger5b DNA + chr9:115772568-115772713 chr9 115772568 115772713 MamRep137 DNA + chr9:115772783-115772981 chr9 115772783 115772981 L1MA8 LINE + chr9:115773944-115773996 chr9 115773944 115773996 MIR3 SINE + chr9:116029051-116029143 chr9 116029051 116029143 L2a LINE + chr9:116055534-116055630 chr9 116055534 116055630 AluSx3 SINE + chr9:116055720-116056024 chr9 116055720 116056024 AluJb SINE - chr9:118242982-118243029 chr9 118242982 118243029 (AAC)n Simple_repeat + chr9:118253803-118253846 chr9 118253803 118253846 (GTTT)n Simple_repeat + chr9:118257941-118257973 chr9 118257941 118257973 (TCTTTC)n Simple_repeat + chr9:118262278-118262315 chr9 118262278 118262315 (T)n Simple_repeat + chr9:118267688-118267715 chr9 118267688 118267715 (ATT)n Simple_repeat + chr9:118281425-118281491 chr9 118281425 118281491 (CTC)n Simple_repeat + chr9:118338573-118338586 chr9 118338573 118338586 A-rich Low_complexity + chr9:118365201-118365225 chr9 118365201 118365225 (CAA)n Simple_repeat + chr9:121918531-121918553 chr9 121918531 121918553 (A)n Simple_repeat + chr9:121924890-121924915 chr9 121924890 121924915 (TGTG)n Simple_repeat + chr9:123555894-123556048 chr9 123555894 123556048 MIRb SINE - chr9:123556037-123556170 chr9 123556037 123556170 L2a LINE - chr9:123556215-123556390 chr9 123556215 123556390 MIRb SINE + chr9:123556419-123556608 chr9 123556419 123556608 MIR SINE - chr9:123556784-123556825 chr9 123556784 123556825 (TG)n Simple_repeat + chr9:123560603-123560803 chr9 123560603 123560803 L2c LINE - chr9:123562870-123563620 chr9 123562870 123563620 L1MA8 LINE - chr9:123605776-123606070 chr9 123605776 123606070 AluJb SINE + chr9:123607018-123607183 chr9 123607018 123607183 Tigger7 DNA + chr9:123608483-123608774 chr9 123608483 123608774 AluJr SINE + chr9:123609050-123609093 chr9 123609050 123609093 Charlie19a DNA + chr9:123609194-123609289 chr9 123609194 123609289 MIR3 SINE - chr9:123610287-123610393 chr9 123610287 123610393 L2 LINE + chr9:123610361-123610478 chr9 123610361 123610478 MER5A DNA + chr9:123611597-123611630 chr9 123611597 123611630 (T)n Simple_repeat + chr9:123611630-123611773 chr9 123611630 123611773 Charlie1a DNA - chr9:123611811-123611938 chr9 123611811 123611938 MER5A1 DNA + chr9:123611946-123612110 chr9 123611946 123612110 MER5B DNA - chr9:123612728-123612805 chr9 123612728 123612805 MIRb SINE - chr9:123612876-123612975 chr9 123612876 123612975 L2d2 LINE - chr9:123615034-123615265 chr9 123615034 123615265 L2d LINE + chr9:123615509-123615677 chr9 123615509 123615677 MIRb SINE - chr9:125699384-125699424 chr9 125699384 125699424 AluJr SINE + chr9:125876079-125876271 chr9 125876079 125876271 MER58A DNA + chr9:125878730-125878754 chr9 125878730 125878754 (A)n Simple_repeat + chr9:125879064-125879174 chr9 125879064 125879174 MIRb SINE + chr9:125881996-125882078 chr9 125881996 125882078 MIR SINE - chr9:130208088-130208324 chr9 130208088 130208324 AluSg SINE + chr9:130208627-130208884 chr9 130208627 130208884 AluJr SINE - chr9:130209358-130209450 chr9 130209358 130209450 MER5B DNA - chr9:130209534-130209799 chr9 130209534 130209799 AluSp SINE + chr9:130553071-130553364 chr9 130553071 130553364 AluSx1 SINE - chr9:130553385-130554083 chr9 130553385 130554083 MLT1C2 LTR - chr9:130553625-130553922 chr9 130553625 130553922 AluSq2 SINE - chr9:130554463-130554753 chr9 130554463 130554753 AluSx SINE + chr9:130554851-130554912 chr9 130554851 130554912 L1M5 LINE + chr9:130554978-130555098 chr9 130554978 130555098 L2a LINE - chr9:130555371-130555495 chr9 130555371 130555495 FLAM_C SINE - chr9:130555695-130555800 chr9 130555695 130555800 L2a LINE + chr9:130558045-130558147 chr9 130558045 130558147 MIRb SINE - chr9:130877748-130877767 chr9 130877748 130877767 (GCA)n Simple_repeat + chr9:131067978-131068275 chr9 131067978 131068275 AluJo SINE - chr9:131069573-131070191 chr9 131069573 131070191 AluJr SINE + chr9:131070193-131070250 chr9 131070193 131070250 AluYh3 SINE + chr9:131070832-131070949 chr9 131070832 131070949 MLT2D LTR + chr9:131070949-131071172 chr9 131070949 131071172 AluSx3 SINE + chr9:131486769-131486844 chr9 131486769 131486844 MIRb SINE - chr9:131488261-131488375 chr9 131488261 131488375 MER67A LTR - chr9:131489956-131490046 chr9 131489956 131490046 L2b LINE - chr9:131491275-131491376 chr9 131491275 131491376 MER94 DNA - chr9:132398381-132398689 chr9 132398381 132398689 AluY SINE + chr9:132398693-132398987 chr9 132398693 132398987 AluSx1 SINE + chr9:132574642-132574766 chr9 132574642 132574766 L3 LINE + chr9:132812152-132812287 chr9 132812152 132812287 AluJo SINE - chr9:133581283-133581581 chr9 133581283 133581581 AluSc SINE - chr9:133581834-133582424 chr9 133581834 133582424 AluJb SINE - chr9:133581994-133582314 chr9 133581994 133582314 AluJr SINE - chr9:133582609-133582729 chr9 133582609 133582729 AluJb SINE - chr9:133583798-133583837 chr9 133583798 133583837 MER4D LTR + chr9:133584388-133584598 chr9 133584388 133584598 AluJb SINE + chr9:136197080-136197365 chr9 136197080 136197365 AluSz SINE - chr9:136197485-136197551 chr9 136197485 136197551 AluY SINE + chr9:136892565-136892831 chr9 136892565 136892831 AluJb SINE - chr9:138360130-138360152 chr9 138360130 138360152 (TTTG)n Simple_repeat + chr9:141112165-141112273 chr9 141112165 141112273 MER57C1 LTR - chr9:141112593-141112672 chr9 141112593 141112672 Kanga1c DNA + chr9:141112753-141113582 chr9 141112753 141113582 Tigger3c DNA - chr9:141112977-141113558 chr9 141112977 141113558 MER4A1_ LTR - chr9:141113579-141113671 chr9 141113579 141113671 Tigger3 DNA - chr9:141115634-141115821 chr9 141115634 141115821 LTR56 LTR + chr9:141129376-141129437 chr9 141129376 141129437 (GATA)n Simple_repeat + chr9:141131653-141131688 chr9 141131653 141131688 (TTTGTT)n Simple_repeat + chr9:141135442-141135525 chr9 141135442 141135525 MIR1_Amn SINE + chr9:141135785-141135836 chr9 141135785 141135836 AluSq2 SINE + chr9:141149436-141149543 chr9 141149436 141149543 Charlie29b DNA + chr9:141149717-141149825 chr9 141149717 141149825 MER8 DNA + chr9:141151334-141151475 chr9 141151334 141151475 L1ME4b LINE - chr9:141151817-141151937 chr9 141151817 141151937 AluJb SINE + chr9:14717444-14717578 chr9 14717444 14717578 MIRb SINE - chr9:14717823-14717975 chr9 14717823 14717975 MIR SINE + chr9:14718013-14718075 chr9 14718013 14718075 MADE2 DNA - chr9:14719502-14719559 chr9 14719502 14719559 (GCCT)n Simple_repeat + chr9:14719559-14719642 chr9 14719559 14719642 (CCTT)n Simple_repeat + chr9:19194620-19201470 chr9 19194620 19201470 L1MB5 LINE + chr9:19201073-19201324 chr9 19201073 19201324 AluSc8 SINE - chr9:19202648-19203268 chr9 19202648 19203268 AluJr SINE + chr9:19202800-19203106 chr9 19202800 19203106 AluSq2 SINE + chr9:19203274-19203311 chr9 19203274 19203311 (TG)n Simple_repeat + chr9:19203464-19203538 chr9 19203464 19203538 MER5A1 DNA + chr9:19203538-19203834 chr9 19203538 19203834 AluSx SINE + chr9:19203836-19204168 chr9 19203836 19204168 AluYk2 SINE + chr9:19204168-19204262 chr9 19204168 19204262 MER5A1 DNA + chr9:19204367-19204676 chr9 19204367 19204676 AluJb SINE - chr9:19204721-19204859 chr9 19204721 19204859 AluSz6 SINE - chr9:19204865-19205170 chr9 19204865 19205170 AluSz SINE - chr9:19205220-19205856 chr9 19205220 19205856 AluJr SINE + chr9:19205311-19205611 chr9 19205311 19205611 AluSc SINE + chr9:19205888-19206006 chr9 19205888 19206006 L2b LINE + chr9:19206256-19206306 chr9 19206256 19206306 (TTAATTT)n Simple_repeat + chr9:19206306-19206600 chr9 19206306 19206600 AluY SINE - chr9:19206606-19206965 chr9 19206606 19206965 AluSz SINE - chr9:19207052-19207209 chr9 19207052 19207209 FRAM SINE - chr9:19207608-19207733 chr9 19207608 19207733 AluJr4 SINE - chr9:19207880-19207928 chr9 19207880 19207928 (AC)n Simple_repeat + chr9:19207957-19208048 chr9 19207957 19208048 MamTip2 DNA - chr9:19208175-19208479 chr9 19208175 19208479 AluSq2 SINE + chr9:19209631-19209909 chr9 19209631 19209909 AluSc8 SINE - chr9:19210530-19210601 chr9 19210530 19210601 (TG)n Simple_repeat + chr9:19210618-19210886 chr9 19210618 19210886 AluSz SINE - chr9:19210891-19211013 chr9 19210891 19211013 MER101 LTR - chr9:19211013-19211582 chr9 19211013 19211582 AluJb SINE - chr9:19211159-19211464 chr9 19211159 19211464 AluSq SINE + chr9:19211748-19211827 chr9 19211748 19211827 AluSz6 SINE - chr9:19211910-19212070 chr9 19211910 19212070 MIRb SINE + chr9:19212175-19212409 chr9 19212175 19212409 AluSg7 SINE + chr9:19212435-19212747 chr9 19212435 19212747 AluSq2 SINE - chr9:19212749-19213053 chr9 19212749 19213053 AluSx3 SINE - chr9:19213389-19213688 chr9 19213389 19213688 AluSp SINE - chr9:19213789-19213995 chr9 19213789 19213995 X30_DNA DNA + chr9:19214125-19214218 chr9 19214125 19214218 LTR88c LTR + chr9:19214285-19214409 chr9 19214285 19214409 FLAM_A SINE - chr9:19214437-19214662 chr9 19214437 19214662 L2a LINE - chr9:19214665-19214796 chr9 19214665 19214796 AluSg4 SINE + chr9:19215461-19215549 chr9 19215461 19215549 L2a LINE + chr9:19215611-19215746 chr9 19215611 19215746 AluSp SINE + chr9:19215746-19216031 chr9 19215746 19216031 AluSz SINE + chr9:19216031-19216074 chr9 19216031 19216074 (AAACA)n Simple_repeat + chr9:19216096-19216398 chr9 19216096 19216398 AluSq2 SINE + chr9:19216435-19216536 chr9 19216435 19216536 MIR SINE - chr9:19217027-19217096 chr9 19217027 19217096 MIRb SINE - chr9:19217373-19217401 chr9 19217373 19217401 U6 snRNA - chr9:19217786-19218083 chr9 19217786 19218083 AluSx SINE - chr9:19218109-19218383 chr9 19218109 19218383 AluJo SINE - chr9:19218432-19218578 chr9 19218432 19218578 FRAM SINE - chr9:19218783-19221074 chr9 19218783 19221074 L2d LINE + chr9:19218875-19219046 chr9 19218875 19219046 MER5B DNA - chr9:19219285-19219716 chr9 19219285 19219716 MLT1D LTR - chr9:19219716-19219859 chr9 19219716 19219859 AluSz6 SINE - chr9:19219859-19219907 chr9 19219859 19219907 FRAM SINE + chr9:19219911-19220217 chr9 19219911 19220217 AluSg7 SINE + chr9:19220226-19221009 chr9 19220226 19221009 Tigger17a DNA - chr9:19220566-19220867 chr9 19220566 19220867 AluY SINE - chr9:19221085-19221353 chr9 19221085 19221353 AluJb SINE + chr9:19221398-19221567 chr9 19221398 19221567 AluJr SINE + chr9:19221569-19221876 chr9 19221569 19221876 AluSz SINE + chr9:19221877-19222369 chr9 19221877 19222369 L1MC5 LINE + chr9:19222003-19222304 chr9 19222003 19222304 AluSx1 SINE + chr9:19222386-19222407 chr9 19222386 19222407 (TA)n Simple_repeat + chr9:19222407-19222706 chr9 19222407 19222706 AluSc SINE - chr9:19222738-19223050 chr9 19222738 19223050 AluJo SINE - chr9:19223403-19223716 chr9 19223403 19223716 AluSq2 SINE + chr9:19224475-19224600 chr9 19224475 19224600 MIR3 SINE + chr9:19224620-19224797 chr9 19224620 19224797 L1MC5 LINE - chr9:19224873-19225170 chr9 19224873 19225170 AluY SINE + chr9:19225354-19225834 chr9 19225354 19225834 MLT1F2 LTR - chr9:19226021-19226043 chr9 19226021 19226043 (ATT)n Simple_repeat + chr9:19226045-19226340 chr9 19226045 19226340 AluSz6 SINE - chr9:19226484-19226785 chr9 19226484 19226785 AluSg SINE + chr9:19226790-19227087 chr9 19226790 19227087 AluSx SINE - chr9:19227354-19227366 chr9 19227354 19227366 (AT)n Simple_repeat + chr9:19227366-19227656 chr9 19227366 19227656 AluSx1 SINE - chr9:19227656-19227678 chr9 19227656 19227678 (AT)n Simple_repeat + chr9:19227678-19227998 chr9 19227678 19227998 AluSz SINE + chr9:19227998-19228026 chr9 19227998 19228026 (AT)n Simple_repeat + chr9:19228420-19228711 chr9 19228420 19228711 AluJr SINE + chr9:19228888-19229200 chr9 19228888 19229200 AluSp SINE - chr9:19374630-19374870 chr9 19374630 19374870 AluJb SINE + chr9:19375040-19375291 chr9 19375040 19375291 AluSx SINE - chr9:19375424-19375558 chr9 19375424 19375558 MER5A1 DNA + chr9:19453422-19453555 chr9 19453422 19453555 L1ME4a LINE - chr9:21550146-21550171 chr9 21550146 21550171 (ATC)n Simple_repeat + chr9:21699310-21699523 chr9 21699310 21699523 7SLRNA srpRNA + chr9:2783600-2783633 chr9 2783600 2783633 (AAAC)n Simple_repeat + chr9:2786771-2786853 chr9 2786771 2786853 MamRep137 DNA - chr9:2789203-2789293 chr9 2789203 2789293 MIR1_Amn SINE + chr9:2792445-2792481 chr9 2792445 2792481 (AC)n Simple_repeat + chr9:2794298-2794674 chr9 2794298 2794674 THE1C LTR - chr9:2795215-2795243 chr9 2795215 2795243 (T)n Simple_repeat + chr9:2795335-2795502 chr9 2795335 2795502 MIRc SINE - chr9:2796253-2796345 chr9 2796253 2796345 MamTip2b DNA - chr9:2796996-2797175 chr9 2796996 2797175 MER104 DNA - chr9:2803436-2803713 chr9 2803436 2803713 Eutr10 LTR - chr9:28717340-28717357 chr9 28717340 28717357 (A)n Simple_repeat + chr9:28814793-28814819 chr9 28814793 28814819 (CA)n Simple_repeat + chr9:28860562-28860605 chr9 28860562 28860605 (ATAG)n Simple_repeat + chr9:28897519-28897550 chr9 28897519 28897550 (TGTT)n Simple_repeat + chr9:28902027-28902049 chr9 28902027 28902049 (TAA)n Simple_repeat + chr9:28920723-28920746 chr9 28920723 28920746 (AC)n Simple_repeat + chr9:28932891-28932920 chr9 28932891 28932920 (TTA)n Simple_repeat + chr9:28948519-28948558 chr9 28948519 28948558 (CACATA)n Simple_repeat + chr9:28952337-28952383 chr9 28952337 28952383 MIR1_Amn SINE + chr9:28959610-28959644 chr9 28959610 28959644 (CA)n Simple_repeat + chr9:28960844-28960881 chr9 28960844 28960881 (ATTC)n Simple_repeat + chr9:28962035-28962060 chr9 28962035 28962060 (AAAC)n Simple_repeat + chr9:28963541-28963576 chr9 28963541 28963576 (AC)n Simple_repeat + chr9:28965799-28965840 chr9 28965799 28965840 (ATATAA)n Simple_repeat + chr9:28974955-28974988 chr9 28974955 28974988 MamRTE1 LINE - chr9:28979503-28979531 chr9 28979503 28979531 (AC)n Simple_repeat + chr9:28983316-28983335 chr9 28983316 28983335 (A)n Simple_repeat + chr9:28997523-28997539 chr9 28997523 28997539 (AAT)n Simple_repeat + chr9:28997845-28997865 chr9 28997845 28997865 (AAT)n Simple_repeat + chr9:29001623-29001664 chr9 29001623 29001664 MADE1 DNA + chr9:29004733-29004774 chr9 29004733 29004774 (CA)n Simple_repeat + chr9:29005300-29005338 chr9 29005300 29005338 (AC)n Simple_repeat + chr9:29006816-29006865 chr9 29006816 29006865 MIR3 SINE + chr9:29026930-29026982 chr9 29026930 29026982 A-rich Low_complexity + chr9:29028427-29028473 chr9 29028427 29028473 (GA)n Simple_repeat + chr9:29031243-29031270 chr9 29031243 29031270 (GTG)n Simple_repeat + chr9:29033376-29033409 chr9 29033376 29033409 (TA)n Simple_repeat + chr9:29034124-29034166 chr9 29034124 29034166 (ATGA)n Simple_repeat + chr9:29038671-29038699 chr9 29038671 29038699 (A)n Simple_repeat + chr9:29042223-29042265 chr9 29042223 29042265 5S rRNA + chr9:29063093-29063126 chr9 29063093 29063126 (GTTT)n Simple_repeat + chr9:29070866-29070901 chr9 29070866 29070901 (AT)n Simple_repeat + chr9:29071152-29071201 chr9 29071152 29071201 (TATTG)n Simple_repeat + chr9:29071480-29071529 chr9 29071480 29071529 (AT)n Simple_repeat + chr9:29085279-29085316 chr9 29085279 29085316 (A)n Simple_repeat + chr9:29092014-29092047 chr9 29092014 29092047 (ATA)n Simple_repeat + chr9:29093055-29093099 chr9 29093055 29093099 (GA)n Simple_repeat + chr9:29093377-29093406 chr9 29093377 29093406 (TTA)n Simple_repeat + chr9:29093425-29093475 chr9 29093425 29093475 MIRc SINE - chr9:29095418-29095449 chr9 29095418 29095449 (ATA)n Simple_repeat + chr9:29114378-29114418 chr9 29114378 29114418 (TTA)n Simple_repeat + chr9:29115632-29115670 chr9 29115632 29115670 (ATT)n Simple_repeat + chr9:29119461-29119494 chr9 29119461 29119494 (ATA)n Simple_repeat + chr9:29134790-29134820 chr9 29134790 29134820 (AT)n Simple_repeat + chr9:29145847-29145942 chr9 29145847 29145942 (AT)n Simple_repeat + chr9:29145885-29145936 chr9 29145885 29145936 (TATG)n Simple_repeat + chr9:29153184-29153241 chr9 29153184 29153241 (TATTTAT)n Simple_repeat + chr9:29158721-29158772 chr9 29158721 29158772 (GT)n Simple_repeat + chr9:29158771-29158833 chr9 29158771 29158833 GA-rich Low_complexity + chr9:29162963-29163002 chr9 29162963 29163002 (AAAGAG)n Simple_repeat + chr9:29164703-29164734 chr9 29164703 29164734 (AC)n Simple_repeat + chr9:29165967-29166009 chr9 29165967 29166009 (TGTGTA)n Simple_repeat + chr9:29170998-29171030 chr9 29170998 29171030 (CTTTT)n Simple_repeat + chr9:29178386-29178422 chr9 29178386 29178422 (ATTT)n Simple_repeat + chr9:29179156-29179200 chr9 29179156 29179200 (AT)n Simple_repeat + chr9:29180858-29180907 chr9 29180858 29180907 A-rich Low_complexity + chr9:29187778-29187799 chr9 29187778 29187799 (T)n Simple_repeat + chr9:29187978-29188003 chr9 29187978 29188003 (TTAT)n Simple_repeat + chr9:29195343-29195382 chr9 29195343 29195382 (TG)n Simple_repeat + chr9:29195593-29195642 chr9 29195593 29195642 (TAATTAA)n Simple_repeat + chr9:29197475-29197502 chr9 29197475 29197502 (ATA)n Simple_repeat + chr9:29209488-29209531 chr9 29209488 29209531 GA-rich Low_complexity + chr9:33016088-33016148 chr9 33016088 33016148 L3 LINE - chr9:33017601-33017701 chr9 33017601 33017701 MER77B LTR - chr9:33019334-33019356 chr9 33019334 33019356 (AATA)n Simple_repeat + chr9:33020550-33020612 chr9 33020550 33020612 MIRb SINE + chr9:33020621-33020662 chr9 33020621 33020662 A-rich Low_complexity + chr9:33024179-33024309 chr9 33024179 33024309 AluSq2 SINE - chr9:34666549-34666567 chr9 34666549 34666567 (T)n Simple_repeat + chr9:34999277-34999313 chr9 34999277 34999313 (ATGTACG)n Simple_repeat + chr9:35054437-35055846 chr9 35054437 35055846 Ricksha_b DNA + chr9:35055757-35055906 chr9 35055757 35055906 Ricksha DNA - chr9:3527370-3527433 chr9 3527370 3527433 MIR3 SINE + chr9:3527461-3527580 chr9 3527461 3527580 MIRb SINE - chr9:35758572-35758597 chr9 35758572 35758597 (A)n Simple_repeat + chr9:35759899-35759936 chr9 35759899 35759936 (T)n Simple_repeat + chr9:35767280-35767301 chr9 35767280 35767301 (T)n Simple_repeat + chr9:35767809-35767829 chr9 35767809 35767829 (TTG)n Simple_repeat + chr9:36277331-36277383 chr9 36277331 36277383 (T)n Simple_repeat + chr9:36280637-36280672 chr9 36280637 36280672 L2b LINE - chr9:36401195-36401220 chr9 36401195 36401220 (GGGGC)n Simple_repeat + chr9:36402331-36402354 chr9 36402331 36402354 (TTGT)n Simple_repeat + chr9:36402491-36402508 chr9 36402491 36402508 (A)n Simple_repeat + chr9:36410322-36410498 chr9 36410322 36410498 AluSg4 SINE - chr9:36472386-36472437 chr9 36472386 36472437 MER30 DNA + chr9:36472436-36472509 chr9 36472436 36472509 MER30 DNA + chr9:36484163-36484192 chr9 36484163 36484192 MER5B DNA + chr9:36678702-36678743 chr9 36678702 36678743 L2b LINE - chr9:37083730-37083926 chr9 37083730 37083926 L2a LINE - chr9:37084149-37084292 chr9 37084149 37084292 FRAM SINE - chr9:37084834-37085034 chr9 37084834 37085034 MER58A DNA - chr9:37085551-37085767 chr9 37085551 37085767 Charlie23a DNA - chr9:37088141-37088269 chr9 37088141 37088269 L2d2 LINE - chr9:37088304-37088425 chr9 37088304 37088425 FLAM_A SINE - chr9:37088443-37089233 chr9 37088443 37089233 Tigger20a DNA - chr9:37089247-37089293 chr9 37089247 37089293 L2d2 LINE - chr9:37089364-37090902 chr9 37089364 37090902 L1MC5 LINE - chr9:37089483-37089796 chr9 37089483 37089796 MER2 DNA - chr9:37089796-37089832 chr9 37089796 37089832 (TG)n Simple_repeat + chr9:37096313-37096343 chr9 37096313 37096343 (TTAT)n Simple_repeat + chr9:37503808-37504115 chr9 37503808 37504115 L3 LINE + chr9:37504116-37504937 chr9 37504116 37504937 LTR67B LTR - chr9:37504382-37504695 chr9 37504382 37504695 AluSx3 SINE - chr9:37505478-37505757 chr9 37505478 37505757 AluSp SINE - chr9:37506216-37508857 chr9 37506216 37508857 L3 LINE + chr9:37506532-37507767 chr9 37506532 37507767 L1MC4 LINE - chr9:37508911-37509174 chr9 37508911 37509174 L2b LINE - chr9:37509567-37509857 chr9 37509567 37509857 MLT1I LTR - chr9:37779266-37779669 chr9 37779266 37779669 L1PB3 LINE + chr9:37885339-37885365 chr9 37885339 37885365 (A)n Simple_repeat + chr9:38407282-38407429 chr9 38407282 38407429 MIR3 SINE - chr9:38407641-38407874 chr9 38407641 38407874 MIRc SINE + chr9:38408128-38408448 chr9 38408128 38408448 AluJb SINE + chr9:38408686-38408832 chr9 38408686 38408832 MIR3 SINE - chr9:6646151-6646204 chr9 6646151 6646204 MIRb SINE + chr9:6650806-6650878 chr9 6650806 6650878 GA-rich Low_complexity + chr9:6651630-6651664 chr9 6651630 6651664 A-rich Low_complexity + chr9:6657194-6657215 chr9 6657194 6657215 (TG)n Simple_repeat + chr9:6664419-6664457 chr9 6664419 6664457 (GAGGTCA)n Simple_repeat + chr9:6670535-6670733 chr9 6670535 6670733 MIRb SINE - chr9:68837570-68837784 chr9 68837570 68837784 MIR SINE + chr9:68838258-68838380 chr9 68838258 68838380 MER94 DNA + chr9:68838392-68838626 chr9 68838392 68838626 MER20B DNA - chr9:69007423-69007661 chr9 69007423 69007661 AluSx SINE + chr9:69013082-69013292 chr9 69013082 69013292 MIRb SINE - chr9:69027099-69027134 chr9 69027099 69027134 A-rich Low_complexity + chr9:69027163-69027207 chr9 69027163 69027207 MADE1 DNA - chr9:69046485-69046523 chr9 69046485 69046523 (TA)n Simple_repeat + chr9:69049267-69049313 chr9 69049267 69049313 (TCATAT)n Simple_repeat + chr9:69057664-69057723 chr9 69057664 69057723 A-rich Low_complexity + chr9:69060247-69060291 chr9 69060247 69060291 (GAAT)n Simple_repeat + chr9:69060921-69060967 chr9 69060921 69060967 (TTTA)n Simple_repeat + chr9:69067532-69067667 chr9 69067532 69067667 MIR SINE - chr9:70205790-70205830 chr9 70205790 70205830 A-rich Low_complexity + chr9:70205939-70206017 chr9 70205939 70206017 Tigger16a DNA + chr9:70207858-70208107 chr9 70207858 70208107 AluSz SINE + chr9:70208127-70208166 chr9 70208127 70208166 (AAAAAT)n Simple_repeat + chr9:70208658-70208683 chr9 70208658 70208683 (A)n Simple_repeat + chr9:70209480-70209772 chr9 70209480 70209772 L2c LINE + chr9:70211522-70211550 chr9 70211522 70211550 (A)n Simple_repeat + chr9:74291784-74291807 chr9 74291784 74291807 (AC)n Simple_repeat + chr9:76706421-76706456 chr9 76706421 76706456 LTR7B LTR - chr9:77111602-77111638 chr9 77111602 77111638 (T)n Simple_repeat + chr9:7795246-7795267 chr9 7795246 7795267 (A)n Simple_repeat + chr9:79013137-79015172 chr9 79013137 79015172 L1MC2 LINE + chr9:79013620-79013650 chr9 79013620 79013650 LTR6A LTR - chr9:88158269-88158415 chr9 88158269 88158415 MER5A DNA + chr9:88422444-88422467 chr9 88422444 88422467 (TG)n Simple_repeat + chr9:88425672-88425713 chr9 88425672 88425713 (TG)n Simple_repeat + chr9:88425713-88425748 chr9 88425713 88425748 (TA)n Simple_repeat + chr9:88427880-88427935 chr9 88427880 88427935 L2b LINE - chr9:88433209-88433241 chr9 88433209 88433241 (TTTTA)n Simple_repeat + chr9:88436360-88436387 chr9 88436360 88436387 (TATG)n Simple_repeat + chr9:88439077-88439105 chr9 88439077 88439105 (ATTT)n Simple_repeat + chr9:88638290-88638374 chr9 88638290 88638374 A-rich Low_complexity + chr9:88638768-88638907 chr9 88638768 88638907 FLAM_C SINE - chr9:88639158-88640258 chr9 88639158 88640258 L2 LINE - chr9:88640628-88640752 chr9 88640628 88640752 AluSc8 SINE + chr9:91094032-91094108 chr9 91094032 91094108 MADE1 DNA + chr9:91793752-91793783 chr9 91793752 91793783 A-rich Low_complexity + chr9:91925237-91925367 chr9 91925237 91925367 FLAM_A SINE - chr9:91933042-91933098 chr9 91933042 91933098 L2a LINE + chr9:95606681-95606714 chr9 95606681 95606714 (CA)n Simple_repeat + chr9:96109869-96115626 chr9 96109869 96115626 HERVH-int LTR + chr9:96125612-96125769 chr9 96125612 96125769 MIRb SINE - chr9:96205806-96206306 chr9 96205806 96206306 L1MEf LINE - chr9:96206746-96206807 chr9 96206746 96206807 L1M4 LINE - chr9:96207865-96208077 chr9 96207865 96208077 AluJb SINE - chr9:96930549-96930654 chr9 96930549 96930654 Charlie9 DNA + chr9:96931147-96931289 chr9 96931147 96931289 MER33 DNA - chr9:96931440-96931581 chr9 96931440 96931581 FLAM_C SINE - chr9:96931753-96932045 chr9 96931753 96932045 MER2 DNA + chr9:96933037-96933184 chr9 96933037 96933184 L1MA8 LINE + chr9:96934422-96934499 chr9 96934422 96934499 MIRb SINE - chr9:96934741-96934793 chr9 96934741 96934793 MER112 DNA + chr9:96935107-96935196 chr9 96935107 96935196 (TTTTTG)n Simple_repeat + chr9:96935888-96937396 chr9 96935888 96937396 L1M4 LINE - chr9:96935955-96936122 chr9 96935955 96936122 FRAM SINE - chr9:96936131-96936190 chr9 96936131 96936190 L1M1 LINE - chr9:96936210-96936935 chr9 96936210 96936935 MER21B LTR - chr9:96940383-96940519 chr9 96940383 96940519 AluSx SINE + chr9:96940519-96940808 chr9 96940519 96940808 AluSx1 SINE + chr9:96941898-96941948 chr9 96941898 96941948 (CATTTTT)n Simple_repeat + chr9:98629407-98629456 chr9 98629407 98629456 L3 LINE - chr9:98634436-98634542 chr9 98634436 98634542 L1MB2 LINE - chr9:98778387-98778469 chr9 98778387 98778469 MIRb SINE + chr9:98778899-98779169 chr9 98778899 98779169 Charlie18a DNA + chr9:98779181-98779214 chr9 98779181 98779214 (GTTT)n Simple_repeat + chr9:98779716-98779873 chr9 98779716 98779873 MER5B DNA + chr9:98780072-98780542 chr9 98780072 98780542 L1MB3 LINE + chr9:99517060-99517153 chr9 99517060 99517153 L2a LINE - chr9:99541608-99541632 chr9 99541608 99541632 (AC)n Simple_repeat + chr9:99565518-99565545 chr9 99565518 99565545 (TG)n Simple_repeat + chr9:99705545-99705645 chr9 99705545 99705645 L1MB8 LINE - chr9:99706569-99707085 chr9 99706569 99707085 L1MB2 LINE - chr9:99879156-99879466 chr9 99879156 99879466 L1ME4a LINE - chr9:99879567-99879687 chr9 99879567 99879687 L1MB3 LINE - chr9:99879684-99880761 chr9 99879684 99880761 L1MC1 LINE + chr9:99916390-99916397 chr9 99916390 99916397 (TGTG)n Simple_repeat + chr9:99916397-99916448 chr9 99916397 99916448 (ATGTGT)n Simple_repeat + chr9:99918988-99919026 chr9 99918988 99919026 (TACAAT)n Simple_repeat + chr9:99923032-99923136 chr9 99923032 99923136 L1MA9 LINE + chr9:99925579-99925876 chr9 99925579 99925876 AluJr SINE + chr9:99931392-99931419 chr9 99931392 99931419 (TA)n Simple_repeat + chr9:99934163-99934247 chr9 99934163 99934247 MER34C LTR - chr9:99934252-99934286 chr9 99934252 99934286 A-rich Low_complexity + chr9:99934778-99934803 chr9 99934778 99934803 (ATAA)n Simple_repeat + chr9:99935639-99935671 chr9 99935639 99935671 (TATTTA)n Simple_repeat + chr9:99936906-99937015 chr9 99936906 99937015 (TCCT)n Simple_repeat + chr9:99938545-99938618 chr9 99938545 99938618 Penelope1_Vert LINE + chr9:99940406-99940447 chr9 99940406 99940447 (ATAATG)n Simple_repeat + chr9:99941910-99942168 chr9 99941910 99942168 L1MB8 LINE - chr9:99943409-99943437 chr9 99943409 99943437 (AC)n Simple_repeat + chr9:99943731-99943777 chr9 99943731 99943777 (CTTCTA)n Simple_repeat + chr9:99944101-99944211 chr9 99944101 99944211 MIR3 SINE - chr9:99948799-99948870 chr9 99948799 99948870 L2c LINE - chr9:99949218-99949247 chr9 99949218 99949247 (ATTTT)n Simple_repeat + chr9:99951318-99951358 chr9 99951318 99951358 (ATAATAA)n Simple_repeat + chr9:99954332-99954504 chr9 99954332 99954504 MIRc SINE + chr9:99955208-99955310 chr9 99955208 99955310 U6 snRNA - chr9:99955635-99956716 chr9 99955635 99956716 MamGypLTR3a LTR + chr9:99956571-99956677 chr9 99956571 99956677 FLAM_C SINE + chr9:99957548-99957578 chr9 99957548 99957578 (AAT)n Simple_repeat + chr9:99962703-99962729 chr9 99962703 99962729 (AAAC)n Simple_repeat + chr9:99965821-99965922 chr9 99965821 99965922 Alu SINE - chr9:99965922-99965989 chr9 99965922 99965989 FAM SINE - chr9:99976775-99982296 chr9 99976775 99982296 HERVH-int LTR + chrX:100419216-100420834 chrX 100419216 100420834 L2a LINE - chrX:100419315-100419620 chrX 100419315 100419620 AluSx1 SINE - chrX:100419720-100419860 chrX 100419720 100419860 L1M2 LINE - chrX:100596869-100596951 chrX 100596869 100596951 MLT2A1 LTR + chrX:100597030-100597083 chrX 100597030 100597083 FRAM SINE + chrX:100597387-100597462 chrX 100597387 100597462 Charlie15a DNA + chrX:100790295-100790347 chrX 100790295 100790347 MER5A DNA - chrX:101883674-101883781 chrX 101883674 101883781 MLT1D LTR - chrX:101887460-101887510 chrX 101887460 101887510 A-rich Low_complexity + chrX:102054833-102054869 chrX 102054833 102054869 (TAAT)n Simple_repeat + chrX:102072025-102072109 chrX 102072025 102072109 MIR3 SINE - chrX:102075305-102075470 chrX 102075305 102075470 L1MC5 LINE - chrX:102080274-102080385 chrX 102080274 102080385 MLT1F2 LTR - chrX:102081049-102081083 chrX 102081049 102081083 (ACCATC)n Simple_repeat + chrX:102082543-102082629 chrX 102082543 102082629 L1M5 LINE - chrX:102084539-102084652 chrX 102084539 102084652 MIRb SINE + chrX:102085525-102085654 chrX 102085525 102085654 MIRb SINE + chrX:102087253-102087322 chrX 102087253 102087322 MIR3 SINE - chrX:102088484-102088514 chrX 102088484 102088514 (AC)n Simple_repeat + chrX:102088689-102088723 chrX 102088689 102088723 (AT)n Simple_repeat + chrX:102089621-102089800 chrX 102089621 102089800 MIR SINE - chrX:102089828-102089862 chrX 102089828 102089862 Alu SINE + chrX:102089829-102089864 chrX 102089829 102089864 BC200 scRNA + chrX:102090699-102090721 chrX 102090699 102090721 (TGT)n Simple_repeat + chrX:102093912-102093936 chrX 102093912 102093936 (TCA)n Simple_repeat + chrX:102095020-102095158 chrX 102095020 102095158 MIRb SINE + chrX:102097565-102097708 chrX 102097565 102097708 MIRb SINE + chrX:102097985-102098028 chrX 102097985 102098028 (TTTTG)n Simple_repeat + chrX:102098684-102098794 chrX 102098684 102098794 MamRep137 DNA + chrX:102100417-102100525 chrX 102100417 102100525 MIRb SINE + chrX:102100689-102100766 chrX 102100689 102100766 L2a LINE + chrX:102101389-102101529 chrX 102101389 102101529 L1M5 LINE - chrX:102102800-102102918 chrX 102102800 102102918 (AT)n Simple_repeat + chrX:102107431-102107633 chrX 102107431 102107633 MER3 DNA + chrX:102108080-102108118 chrX 102108080 102108118 (TTTAT)n Simple_repeat + chrX:102108118-102108127 chrX 102108118 102108127 (TTTATT)n Simple_repeat + chrX:102108127-102108147 chrX 102108127 102108147 (TTACT)n Simple_repeat + chrX:102115518-102115577 chrX 102115518 102115577 (TTA)n Simple_repeat + chrX:102116823-102116956 chrX 102116823 102116956 AluSz6 SINE - chrX:102117132-102117280 chrX 102117132 102117280 L1ME3C LINE - chrX:102119858-102119897 chrX 102119858 102119897 (TG)n Simple_repeat + chrX:102121474-102121558 chrX 102121474 102121558 L2a LINE - chrX:102121560-102121687 chrX 102121560 102121687 MER53 DNA - chrX:102125780-102125967 chrX 102125780 102125967 L1MD3 LINE - chrX:102133180-102133279 chrX 102133180 102133279 MIRb SINE + chrX:102135225-102135274 chrX 102135225 102135274 MER5B DNA + chrX:102135557-102135611 chrX 102135557 102135611 MER53 DNA + chrX:102135655-102135702 chrX 102135655 102135702 (GTAT)n Simple_repeat + chrX:102136084-102136156 chrX 102136084 102136156 MER53 DNA + chrX:102137288-102137379 chrX 102137288 102137379 LTR79 LTR + chrX:102138910-102138994 chrX 102138910 102138994 MIRb SINE + chrX:102141876-102141908 chrX 102141876 102141908 (TGG)n Simple_repeat + chrX:102142316-102142359 chrX 102142316 102142359 (GTAT)n Simple_repeat + chrX:102142557-102142680 chrX 102142557 102142680 L1MC4 LINE - chrX:102146665-102146773 chrX 102146665 102146773 MIR3 SINE - chrX:102150711-102150732 chrX 102150711 102150732 (TA)n Simple_repeat + chrX:102155941-102156124 chrX 102155941 102156124 MER3 DNA + chrX:102156865-102156914 chrX 102156865 102156914 (TAT)n Simple_repeat + chrX:102157271-102157341 chrX 102157271 102157341 (AT)n Simple_repeat + chrX:102158125-102158173 chrX 102158125 102158173 FRAM SINE + chrX:102158175-102158226 chrX 102158175 102158226 GA-rich Low_complexity + chrX:102158929-102159043 chrX 102158929 102159043 L1ME3C LINE - chrX:102159803-102159852 chrX 102159803 102159852 (ACACATAC)n Simple_repeat + chrX:102159852-102159924 chrX 102159852 102159924 GA-rich Low_complexity + chrX:102161063-102161218 chrX 102161063 102161218 MIRb SINE - chrX:102165297-102165342 chrX 102165297 102165342 (CA)n Simple_repeat + chrX:102425960-102425971 chrX 102425960 102425971 (TA)n Simple_repeat + chrX:102507850-102507916 chrX 102507850 102507916 MIRb SINE - chrX:102569002-102569008 chrX 102569002 102569008 (TGTGTC)n Simple_repeat + chrX:102633583-102633656 chrX 102633583 102633656 MIRb SINE + chrX:102660031-102660095 chrX 102660031 102660095 MIRb SINE + chrX:102666004-102666104 chrX 102666004 102666104 MIR3 SINE - chrX:102681862-102681944 chrX 102681862 102681944 LTR37A LTR - chrX:102682012-102682046 chrX 102682012 102682046 (TGTA)n Simple_repeat + chrX:102692129-102692179 chrX 102692129 102692179 LTR60 LTR - chrX:102695735-102695852 chrX 102695735 102695852 MER84-int LTR - chrX:102699463-102699519 chrX 102699463 102699519 MIRb SINE + chrX:102700776-102700839 chrX 102700776 102700839 MamRep605 LTR? - chrX:102705068-102705132 chrX 102705068 102705132 MIRb SINE + chrX:102718880-102718926 chrX 102718880 102718926 (GT)n Simple_repeat + chrX:102723587-102723632 chrX 102723587 102723632 L2 LINE + chrX:102724007-102724047 chrX 102724007 102724047 (CA)n Simple_repeat + chrX:102726784-102726813 chrX 102726784 102726813 (CAT)n Simple_repeat + chrX:102729571-102729616 chrX 102729571 102729616 MER3 DNA + chrX:102731294-102731339 chrX 102731294 102731339 (TAT)n Simple_repeat + chrX:102732120-102732161 chrX 102732120 102732161 (CA)n Simple_repeat + chrX:102740788-102740810 chrX 102740788 102740810 (AC)n Simple_repeat + chrX:102743189-102743222 chrX 102743189 102743222 (TG)n Simple_repeat + chrX:102746955-102747009 chrX 102746955 102747009 (TG)n Simple_repeat + chrX:102752266-102752323 chrX 102752266 102752323 (GGAT)n Simple_repeat + chrX:102946217-102946263 chrX 102946217 102946263 MER91A DNA - chrX:102997586-102997888 chrX 102997586 102997888 AluJb SINE - chrX:102997894-102998006 chrX 102997894 102998006 MIR SINE - chrX:102998238-102998532 chrX 102998238 102998532 AluSx4 SINE - chrX:102998606-102998915 chrX 102998606 102998915 AluSp SINE - chrX:102998915-102999218 chrX 102998915 102999218 AluSx1 SINE - chrX:102999828-102999938 chrX 102999828 102999938 FLAM_A SINE - chrX:103000035-103000243 chrX 103000035 103000243 MIRb SINE + chrX:103000287-103000436 chrX 103000287 103000436 MamSINE1 SINE - chrX:103000439-103000680 chrX 103000439 103000680 MIRb SINE + chrX:103000759-103000983 chrX 103000759 103000983 AluJr SINE + chrX:103002331-103002370 chrX 103002331 103002370 (GTTT)n Simple_repeat + chrX:103002898-103002958 chrX 103002898 103002958 (TTA)n Simple_repeat + chrX:103003412-103003552 chrX 103003412 103003552 L2d2 LINE + chrX:103003743-103003859 chrX 103003743 103003859 AluSg SINE + chrX:103003863-103003984 chrX 103003863 103003984 AluSp SINE - chrX:103003992-103004279 chrX 103003992 103004279 L1ME3Cz LINE + chrX:103004294-103004586 chrX 103004294 103004586 AluSq2 SINE + chrX:103004639-103004678 chrX 103004639 103004678 A-rich Low_complexity + chrX:103004799-103004877 chrX 103004799 103004877 MIRb SINE + chrX:103004959-103005301 chrX 103004959 103005301 MLT1A1 LTR - chrX:103005724-103006034 chrX 103005724 103006034 AluSp SINE + chrX:103006034-103006134 chrX 103006034 103006134 (GAAA)n Simple_repeat + chrX:103007280-103007506 chrX 103007280 103007506 MIRb SINE - chrX:103007582-103007894 chrX 103007582 103007894 AluSp SINE - chrX:103007916-103008020 chrX 103007916 103008020 MIRc SINE + chrX:103008042-103010295 chrX 103008042 103010295 MIRc SINE + chrX:103008060-103008185 chrX 103008060 103008185 MIR3 SINE + chrX:103008683-103008755 chrX 103008683 103008755 L2d2 LINE - chrX:103008809-103008908 chrX 103008809 103008908 MIRc SINE - chrX:103009923-103010081 chrX 103009923 103010081 AluSz SINE + chrX:103010600-103011434 chrX 103010600 103011434 MER21B LTR - chrX:103011747-103011779 chrX 103011747 103011779 (TGGAGC)n Simple_repeat + chrX:103011966-103012664 chrX 103011966 103012664 MER50 LTR - chrX:103012924-103013737 chrX 103012924 103013737 LTR8A LTR + chrX:103013737-103014097 chrX 103013737 103014097 THE1D LTR - chrX:103016086-103022234 chrX 103016086 103022234 HERVH-int LTR - chrX:103023561-103023860 chrX 103023561 103023860 AluSg4 SINE - chrX:103024400-103024447 chrX 103024400 103024447 (AC)n Simple_repeat + chrX:103024626-103024790 chrX 103024626 103024790 MIRb SINE + chrX:103024792-103025277 chrX 103024792 103025277 MER90a LTR - chrX:103025403-103025695 chrX 103025403 103025695 AluSz SINE + chrX:103025770-103025902 chrX 103025770 103025902 LTR85b LTR + chrX:103026091-103026118 chrX 103026091 103026118 (GAAAA)n Simple_repeat + chrX:103026134-103026429 chrX 103026134 103026429 AluJr SINE - chrX:103026782-103026974 chrX 103026782 103026974 MER53 DNA + chrX:103027137-103027256 chrX 103027137 103027256 MER81 DNA + chrX:103027517-103027540 chrX 103027517 103027540 (ATT)n Simple_repeat + chrX:103027593-103027785 chrX 103027593 103027785 AluSz6 SINE - chrX:106897070-106897095 chrX 106897070 106897095 (T)n Simple_repeat + chrX:107180404-107180451 chrX 107180404 107180451 (CCGCCCT)n Simple_repeat + chrX:107181049-107181080 chrX 107181049 107181080 (TA)n Simple_repeat + chrX:107181296-107181396 chrX 107181296 107181396 L2 LINE + chrX:107184864-107184914 chrX 107184864 107184914 (GTGTAT)n Simple_repeat + chrX:107218818-107218856 chrX 107218818 107218856 (GT)n Simple_repeat + chrX:107221144-107221178 chrX 107221144 107221178 (CCCATAC)n Simple_repeat + chrX:107221903-107221944 chrX 107221903 107221944 (CTCA)n Simple_repeat + chrX:107226736-107226771 chrX 107226736 107226771 (TGTG)n Simple_repeat + chrX:107236092-107236103 chrX 107236092 107236103 (ATA)n Simple_repeat + chrX:107238746-107238783 chrX 107238746 107238783 (AAACA)n Simple_repeat + chrX:107963227-107963263 chrX 107963227 107963263 (AT)n Simple_repeat + chrX:10995880-10995888 chrX 10995880 10995888 (ATTATAT)n Simple_repeat + chrX:11080304-11080339 chrX 11080304 11080339 (ATC)n Simple_repeat + chrX:11081278-11081302 chrX 11081278 11081302 (TTTA)n Simple_repeat + chrX:11087136-11087178 chrX 11087136 11087178 GA-rich Low_complexity + chrX:11101620-11101653 chrX 11101620 11101653 (A)n Simple_repeat + chrX:11103431-11103465 chrX 11103431 11103465 (AC)n Simple_repeat + chrX:11103896-11103945 chrX 11103896 11103945 (TTG)n Simple_repeat + chrX:11109288-11109316 chrX 11109288 11109316 (TTTTG)n Simple_repeat + chrX:11112440-11112473 chrX 11112440 11112473 (AT)n Simple_repeat + chrX:11124370-11124393 chrX 11124370 11124393 (AATT)n Simple_repeat + chrX:11124683-11124696 chrX 11124683 11124696 (AATT)n Simple_repeat + chrX:112967732-112967766 chrX 112967732 112967766 (AC)n Simple_repeat + chrX:112985518-112985560 chrX 112985518 112985560 A-rich Low_complexity + chrX:112987768-112987815 chrX 112987768 112987815 MADE1 DNA + chrX:112990154-112990200 chrX 112990154 112990200 (TTTCTA)n Simple_repeat + chrX:112992132-112992176 chrX 112992132 112992176 L2b LINE + chrX:113001583-113001621 chrX 113001583 113001621 (TC)n Simple_repeat + chrX:113010666-113010696 chrX 113010666 113010696 A-rich Low_complexity + chrX:113011712-113011812 chrX 113011712 113011812 AmnSINE1 SINE - chrX:113012260-113012361 chrX 113012260 113012361 MER5C1 DNA + chrX:113017493-113017668 chrX 113017493 113017668 MIR3 SINE + chrX:113020526-113020587 chrX 113020526 113020587 L2a LINE - chrX:113028742-113028808 chrX 113028742 113028808 (TTAT)n Simple_repeat + chrX:113032868-113032926 chrX 113032868 113032926 L2 LINE + chrX:113035720-113035814 chrX 113035720 113035814 Tigger5b DNA + chrX:113037184-113037209 chrX 113037184 113037209 (A)n Simple_repeat + chrX:113037631-113037734 chrX 113037631 113037734 L2d2 LINE - chrX:113043685-113043723 chrX 113043685 113043723 (ATGA)n Simple_repeat + chrX:113048302-113048335 chrX 113048302 113048335 (CTCTG)n Simple_repeat + chrX:113060832-113060880 chrX 113060832 113060880 (TTTTCA)n Simple_repeat + chrX:113072279-113072307 chrX 113072279 113072307 (AGGG)n Simple_repeat + chrX:113081647-113081701 chrX 113081647 113081701 (TTTA)n Simple_repeat + chrX:113096878-113096995 chrX 113096878 113096995 L2b LINE - chrX:113097353-113097513 chrX 113097353 113097513 MIRb SINE + chrX:113099245-113099314 chrX 113099245 113099314 A-rich Low_complexity + chrX:113101039-113107758 chrX 113101039 113107758 L1PA10 LINE - chrX:113109967-113111017 chrX 113109967 113111017 LTR90A LTR + chrX:113110645-113110691 chrX 113110645 113110691 (GT)n Simple_repeat + chrX:113117791-113117919 chrX 113117791 113117919 MIRb SINE + chrX:113119047-113119141 chrX 113119047 113119141 L2d2 LINE + chrX:113121417-113121572 chrX 113121417 113121572 L2a LINE + chrX:113123103-113123183 chrX 113123103 113123183 MamTip2b DNA + chrX:113128312-113129188 chrX 113128312 113129188 L2c LINE - chrX:113128562-113128613 chrX 113128562 113128613 (CA)n Simple_repeat + chrX:113129310-113136504 chrX 113129310 113136504 L1ME3A LINE - chrX:113132530-113132875 chrX 113132530 113132875 LTR16E2 LTR + chrX:113136578-113136828 chrX 113136578 113136828 MER57B1 LTR + chrX:113136829-113136965 chrX 113136829 113136965 L1MC3 LINE - chrX:113136949-113139034 chrX 113136949 113139034 L1M4b LINE - chrX:113139778-113139806 chrX 113139778 113139806 (ATTTTA)n Simple_repeat + chrX:113139806-113139842 chrX 113139806 113139842 (ATTTAAA)n Simple_repeat + chrX:113146463-113146541 chrX 113146463 113146541 L2 LINE - chrX:113150871-113150918 chrX 113150871 113150918 (TG)n Simple_repeat + chrX:113151220-113151269 chrX 113151220 113151269 (AT)n Simple_repeat + chrX:113151270-113151296 chrX 113151270 113151296 (GT)n Simple_repeat + chrX:113152539-113152564 chrX 113152539 113152564 (A)n Simple_repeat + chrX:113153999-113154029 chrX 113153999 113154029 (TC)n Simple_repeat + chrX:113159671-113159805 chrX 113159671 113159805 MamTip2b DNA + chrX:113160990-113161129 chrX 113160990 113161129 L1MD2 LINE - chrX:113166041-113166178 chrX 113166041 113166178 LTR81 LTR - chrX:113166200-113166258 chrX 113166200 113166258 LTR81AB LTR - chrX:113166265-113166318 chrX 113166265 113166318 (TC)n Simple_repeat + chrX:113167412-113167537 chrX 113167412 113167537 L1M2 LINE + chrX:113167514-113173631 chrX 113167514 113173631 L1M1 LINE - chrX:113173733-113175974 chrX 113173733 113175974 L1MB3 LINE - chrX:113174779-113174805 chrX 113174779 113174805 (AC)n Simple_repeat + chrX:113175001-113175044 chrX 113175001 113175044 (AGAT)n Simple_repeat + chrX:113175976-113176075 chrX 113175976 113176075 L1M3 LINE - chrX:113176091-113176224 chrX 113176091 113176224 LTR81AB LTR + chrX:113178498-113178749 chrX 113178498 113178749 MIRb SINE - chrX:113178755-113178830 chrX 113178755 113178830 L2d2 LINE + chrX:113179084-113179111 chrX 113179084 113179111 A-rich Low_complexity + chrX:113179127-113183488 chrX 113179127 113183488 L2c LINE + chrX:113179614-113180148 chrX 113179614 113180148 LTR82B LTR - chrX:113181486-113181623 chrX 113181486 113181623 L2a LINE - chrX:113181623-113181648 chrX 113181623 113181648 (AT)n Simple_repeat + chrX:113183708-113183758 chrX 113183708 113183758 CR1-3_Croc LINE - chrX:113187371-113187468 chrX 113187371 113187468 (TTCT)n Simple_repeat + chrX:113192905-113192953 chrX 113192905 113192953 (GT)n Simple_repeat + chrX:113193213-113193365 chrX 113193213 113193365 U1 snRNA + chrX:113196548-113196715 chrX 113196548 113196715 MIRc SINE + chrX:113197992-113198031 chrX 113197992 113198031 A-rich Low_complexity + chrX:113198589-113198612 chrX 113198589 113198612 (AAT)n Simple_repeat + chrX:113198690-113198806 chrX 113198690 113198806 MamRep434 DNA + chrX:113199498-113199540 chrX 113199498 113199540 (T)n Simple_repeat + chrX:113199777-113201045 chrX 113199777 113201045 Kanga1c DNA + chrX:113201104-113201126 chrX 113201104 113201126 (AAAT)n Simple_repeat + chrX:113201346-113201456 chrX 113201346 113201456 L1MEc LINE + chrX:113201832-113201930 chrX 113201832 113201930 MER58A DNA + chrX:113234880-113234922 chrX 113234880 113234922 (TA)n Simple_repeat + chrX:113234922-113235305 chrX 113234922 113235305 MLT2A1 LTR - chrX:114957418-114957459 chrX 114957418 114957459 (TCCTT)n Simple_repeat + chrX:114957970-114958264 chrX 114957970 114958264 AluJb SINE + chrX:114958339-114958630 chrX 114958339 114958630 AluSx3 SINE + chrX:114958954-114959284 chrX 114958954 114959284 AluJb SINE - chrX:114959540-114959605 chrX 114959540 114959605 (GAGA)n Simple_repeat + chrX:114961176-114961215 chrX 114961176 114961215 (GGCCC)n Simple_repeat + chrX:114962497-114962588 chrX 114962497 114962588 A-rich Low_complexity + chrX:114964157-114964196 chrX 114964157 114964196 (GGCCC)n Simple_repeat + chrX:114965478-114965569 chrX 114965478 114965569 A-rich Low_complexity + chrX:114967138-114967177 chrX 114967138 114967177 (GGCCC)n Simple_repeat + chrX:114968459-114968545 chrX 114968459 114968545 (GAGAGA)n Simple_repeat + chrX:114970121-114970160 chrX 114970121 114970160 (GGCCC)n Simple_repeat + chrX:114970817-114970856 chrX 114970817 114970856 (TTTA)n Simple_repeat + chrX:114971434-114971524 chrX 114971434 114971524 (GAGAGA)n Simple_repeat + chrX:114973796-114973843 chrX 114973796 114973843 (TTTA)n Simple_repeat + chrX:114976091-114976130 chrX 114976091 114976130 (GGCCC)n Simple_repeat + chrX:114976787-114976834 chrX 114976787 114976834 (TTTA)n Simple_repeat + chrX:114977412-114977506 chrX 114977412 114977506 (GAGAGA)n Simple_repeat + chrX:114979082-114979121 chrX 114979082 114979121 (GGCCC)n Simple_repeat + chrX:114979778-114979821 chrX 114979778 114979821 (TTTA)n Simple_repeat + chrX:114982065-114982104 chrX 114982065 114982104 (GGCCC)n Simple_repeat + chrX:114982761-114982796 chrX 114982761 114982796 (TTTA)n Simple_repeat + chrX:114985050-114985089 chrX 114985050 114985089 (GGCCC)n Simple_repeat + chrX:114985746-114985785 chrX 114985746 114985785 (TTTA)n Simple_repeat + chrX:114988725-114988768 chrX 114988725 114988768 (TTTA)n Simple_repeat + chrX:114993985-114994024 chrX 114993985 114994024 (GGCCC)n Simple_repeat + chrX:114995294-114995409 chrX 114995294 114995409 A-rich Low_complexity + chrX:114996978-114997017 chrX 114996978 114997017 (GGCCC)n Simple_repeat + chrX:114997674-114997725 chrX 114997674 114997725 (TTTA)n Simple_repeat + chrX:114999987-115000026 chrX 114999987 115000026 (GGCCC)n Simple_repeat + chrX:115000683-115000730 chrX 115000683 115000730 (TTTA)n Simple_repeat + chrX:115001308-115001407 chrX 115001308 115001407 A-rich Low_complexity + chrX:115002785-115002820 chrX 115002785 115002820 (TTTA)n Simple_repeat + chrX:115005059-115005088 chrX 115005059 115005088 (GGCCC)n Simple_repeat + chrX:115013147-115013644 chrX 115013147 115013644 MER4A LTR + chrX:115060791-115060887 chrX 115060791 115060887 L2c LINE - chrX:115083873-115083988 chrX 115083873 115083988 L1ME4b LINE + chrX:115085248-115085286 chrX 115085248 115085286 A-rich Low_complexity + chrX:118381140-118381168 chrX 118381140 118381168 (A)n Simple_repeat + chrX:118967768-118967809 chrX 118967768 118967809 (TATTT)n Simple_repeat + chrX:119057973-119058005 chrX 119057973 119058005 (GTTT)n Simple_repeat + chrX:121353738-121373151 chrX 121353738 121373151 MER41-int LTR + chrX:121355856-121356307 chrX 121355856 121356307 LTR7 LTR + chrX:121356309-121361638 chrX 121356309 121361638 HERVH-int LTR + chrX:121365151-121371960 chrX 121365151 121371960 L1PB1 LINE - chrX:121372609-121372649 chrX 121372609 121372649 (TCCTTA)n Simple_repeat + chrX:121373582-121373615 chrX 121373582 121373615 (AATG)n Simple_repeat + chrX:121373631-121373935 chrX 121373631 121373935 AluSz SINE - chrX:121374004-121374740 chrX 121374004 121374740 L1PA16 LINE - chrX:121375428-121375676 chrX 121375428 121375676 MIR SINE - chrX:121375756-121376212 chrX 121375756 121376212 MER61D LTR - chrX:121376651-121376894 chrX 121376651 121376894 MIRc SINE - chrX:124151873-124151887 chrX 124151873 124151887 L1P3 LINE + chrX:124518778-124519166 chrX 124518778 124519166 MER57B2 LTR + chrX:124519301-124519424 chrX 124519301 124519424 MIRc SINE - chrX:124520291-124520880 chrX 124520291 124520880 MER41C LTR + chrX:128142106-128142143 chrX 128142106 128142143 MamRTE1 LINE - chrX:128161664-128161678 chrX 128161664 128161678 (TATATA)n Simple_repeat + chrX:128164176-128164213 chrX 128164176 128164213 A-rich Low_complexity + chrX:128239695-128239730 chrX 128239695 128239730 (TA)n Simple_repeat + chrX:128242596-128242629 chrX 128242596 128242629 (GT)n Simple_repeat + chrX:128243263-128243292 chrX 128243263 128243292 GA-rich Low_complexity + chrX:128243896-128243949 chrX 128243896 128243949 MIRc SINE + chrX:128250962-128250979 chrX 128250962 128250979 (T)n Simple_repeat + chrX:128293024-128293052 chrX 128293024 128293052 (TC)n Simple_repeat + chrX:128316583-128316597 chrX 128316583 128316597 (AGAGAT)n Simple_repeat + chrX:130825525-130826229 chrX 130825525 130826229 MER4B-int LTR - chrX:130835913-130835933 chrX 130835913 130835933 (TA)n Simple_repeat + chrX:130835932-130835949 chrX 130835932 130835949 (AC)n Simple_repeat + chrX:130836885-130837900 chrX 130836885 130837900 PABL_B LTR + chrX:130837071-130837377 chrX 130837071 130837377 AluSp SINE + chrX:130843140-130843266 chrX 130843140 130843266 MER50 LTR - chrX:130852783-130852849 chrX 130852783 130852849 (ATAC)n Simple_repeat + chrX:130855408-130855706 chrX 130855408 130855706 AluSg4 SINE - chrX:130857380-130857524 chrX 130857380 130857524 AluSp SINE - chrX:130864546-130864576 chrX 130864546 130864576 (GT)n Simple_repeat + chrX:130866124-130866212 chrX 130866124 130866212 (TA)n Simple_repeat + chrX:130866539-130866818 chrX 130866539 130866818 AluJo SINE + chrX:130866818-130866856 chrX 130866818 130866856 (AT)n Simple_repeat + chrX:130867213-130867348 chrX 130867213 130867348 FLAM_C SINE - chrX:130867453-130867746 chrX 130867453 130867746 L1MB5 LINE - chrX:130867983-130868012 chrX 130867983 130868012 (AAAAC)n Simple_repeat + chrX:130868504-130868548 chrX 130868504 130868548 X15_LINE LINE + chrX:130869532-130869557 chrX 130869532 130869557 (TG)n Simple_repeat + chrX:130870664-130870963 chrX 130870664 130870963 AluSz SINE + chrX:130871093-130871347 chrX 130871093 130871347 AluSc SINE + chrX:130871361-130871669 chrX 130871361 130871669 AluSp SINE + chrX:130872003-130872084 chrX 130872003 130872084 (ATATAT)n Simple_repeat + chrX:130872019-130872078 chrX 130872019 130872078 (ACAT)n Simple_repeat + chrX:130872164-130872463 chrX 130872164 130872463 AluSc SINE + chrX:130872717-130873003 chrX 130872717 130873003 AluJo SINE + chrX:130873003-130873132 chrX 130873003 130873132 (TA)n Simple_repeat + chrX:130873402-130873538 chrX 130873402 130873538 AluJo SINE - chrX:130876557-130876839 chrX 130876557 130876839 AluSg SINE - chrX:130877831-130878142 chrX 130877831 130878142 AluYk3 SINE - chrX:130878390-130878477 chrX 130878390 130878477 (TATA)n Simple_repeat + chrX:130878801-130879086 chrX 130878801 130879086 AluJo SINE + chrX:130879457-130879750 chrX 130879457 130879750 AluSc8 SINE + chrX:130879750-130879866 chrX 130879750 130879866 AluJr SINE - chrX:130879976-130880211 chrX 130879976 130880211 L1MB5 LINE - chrX:130881759-130882060 chrX 130881759 130882060 AluSx1 SINE + chrX:130882359-130882391 chrX 130882359 130882391 (GT)n Simple_repeat + chrX:130882815-130883132 chrX 130882815 130883132 AluY SINE + chrX:130884037-130884319 chrX 130884037 130884319 AluSx3 SINE + chrX:130884571-130884869 chrX 130884571 130884869 AluSg4 SINE + chrX:130884894-130884967 chrX 130884894 130884967 (TA)n Simple_repeat + chrX:130885304-130885599 chrX 130885304 130885599 AluJo SINE + chrX:130885599-130885643 chrX 130885599 130885643 (AT)n Simple_repeat + chrX:130885986-130886114 chrX 130885986 130886114 AluJr4 SINE - chrX:130886224-130886358 chrX 130886224 130886358 L1MB5 LINE - chrX:130887534-130887859 chrX 130887534 130887859 AluSp SINE + chrX:130888078-130888383 chrX 130888078 130888383 AluSc SINE + chrX:130889086-130889380 chrX 130889086 130889380 AluSg SINE - chrX:130890579-130890612 chrX 130890579 130890612 (ATACAT)n Simple_repeat + chrX:130890616-130890738 chrX 130890616 130890738 AluJr SINE - chrX:130890744-130890825 chrX 130890744 130890825 (ATAT)n Simple_repeat + chrX:130890995-130891308 chrX 130890995 130891308 AluSg SINE + chrX:130891489-130891777 chrX 130891489 130891777 AluJo SINE + chrX:130892138-130892259 chrX 130892138 130892259 AluJr SINE - chrX:130892368-130894736 chrX 130892368 130894736 L1MB5 LINE - chrX:130892672-130892973 chrX 130892672 130892973 AluSg SINE - chrX:130893361-130893409 chrX 130893361 130893409 Alu SINE - chrX:130893418-130893727 chrX 130893418 130893727 AluY SINE - chrX:130894887-130895578 chrX 130894887 130895578 MER50B LTR + chrX:130895727-130896027 chrX 130895727 130896027 AluSx SINE + chrX:130897484-130897736 chrX 130897484 130897736 AluSx1 SINE - chrX:130898591-130898627 chrX 130898591 130898627 (GT)n Simple_repeat + chrX:130898788-130899278 chrX 130898788 130899278 MER11C LTR + chrX:130899289-130899902 chrX 130899289 130899902 AluSz SINE - chrX:130899465-130899754 chrX 130899465 130899754 AluSc8 SINE - chrX:130900256-130900555 chrX 130900256 130900555 AluYk2 SINE + chrX:130902730-130902752 chrX 130902730 130902752 (AAAC)n Simple_repeat + chrX:130902809-130903131 chrX 130902809 130903131 AluYk3 SINE - chrX:130902973-130903013 chrX 130902973 130903013 (T)n Simple_repeat + chrX:130903351-130903418 chrX 130903351 130903418 L1M5 LINE - chrX:130903887-130903946 chrX 130903887 130903946 (AT)n Simple_repeat + chrX:130904281-130904593 chrX 130904281 130904593 AluJr SINE + chrX:130904978-130910521 chrX 130904978 130910521 L1MB5 LINE - chrX:130905211-130906026 chrX 130905211 130906026 L1MB5 LINE - chrX:130906022-130908839 chrX 130906022 130908839 L1MA4 LINE - chrX:130907581-130907617 chrX 130907581 130907617 (TTTTG)n Simple_repeat + chrX:130907619-130907892 chrX 130907619 130907892 AluY SINE - chrX:130908278-130908608 chrX 130908278 130908608 AluSx SINE - chrX:130909941-130910236 chrX 130909941 130910236 AluSx1 SINE - chrX:130910668-130911353 chrX 130910668 130911353 MER50B LTR + chrX:130911468-130911494 chrX 130911468 130911494 (TAAA)n Simple_repeat + chrX:130911494-130911794 chrX 130911494 130911794 AluSx SINE + chrX:130914143-130914187 chrX 130914143 130914187 (GT)n Simple_repeat + chrX:130914664-130914925 chrX 130914664 130914925 AluSz SINE - chrX:130915177-130915471 chrX 130915177 130915471 AluSp SINE - chrX:130915724-130916016 chrX 130915724 130916016 AluSg SINE + chrX:130918599-130918900 chrX 130918599 130918900 AluSp SINE + chrX:130919011-130919315 chrX 130919011 130919315 AluSz SINE + chrX:130919504-130919568 chrX 130919504 130919568 (TA)n Simple_repeat + chrX:130919895-130920184 chrX 130919895 130920184 AluJo SINE + chrX:130920642-130925378 chrX 130920642 130925378 L1MB5 LINE - chrX:130921459-130923994 chrX 130921459 130923994 L1MA4 LINE - chrX:130923116-130923157 chrX 130923116 130923157 (TC)n Simple_repeat + chrX:130923157-130923459 chrX 130923157 130923459 AluSx SINE - chrX:130927864-130928172 chrX 130927864 130928172 AluSz SINE + chrX:130928276-130928321 chrX 130928276 130928321 (TG)n Simple_repeat + chrX:130928382-130928516 chrX 130928382 130928516 FLAM_A SINE + chrX:130928817-130928845 chrX 130928817 130928845 (ATAC)n Simple_repeat + chrX:130929351-130929397 chrX 130929351 130929397 (TTTCT)n Simple_repeat + chrX:130934030-130934308 chrX 130934030 130934308 AluSc SINE + chrX:130934308-130934334 chrX 130934308 130934334 (AATA)n Simple_repeat + chrX:130935620-130935927 chrX 130935620 130935927 AluY SINE - chrX:130938035-130938377 chrX 130938035 130938377 MER31B LTR - chrX:130939162-130939456 chrX 130939162 130939456 AluSp SINE - chrX:130939907-130940670 chrX 130939907 130940670 MLT1H LTR - chrX:130940000-130940307 chrX 130940000 130940307 AluSx SINE + chrX:130941076-130941376 chrX 130941076 130941376 AluSq2 SINE + chrX:130941438-130941733 chrX 130941438 130941733 AluSp SINE + chrX:130942062-130945118 chrX 130942062 130945118 L1MEj LINE - chrX:130942646-130942950 chrX 130942646 130942950 AluSx1 SINE - chrX:130943854-130944457 chrX 130943854 130944457 MIR SINE - chrX:130944007-130944052 chrX 130944007 130944052 (GTTTT)n Simple_repeat + chrX:130944052-130944358 chrX 130944052 130944358 AluSx3 SINE - chrX:130944723-130944982 chrX 130944723 130944982 AluSc SINE + chrX:130945308-130945453 chrX 130945308 130945453 LTR33 LTR - chrX:130945825-130946124 chrX 130945825 130946124 AluSx SINE + chrX:130946124-130946422 chrX 130946124 130946422 AluSp SINE + chrX:130949004-130949312 chrX 130949004 130949312 AluY SINE - chrX:130950414-130950474 chrX 130950414 130950474 LTR41B LTR + chrX:130951536-130951837 chrX 130951536 130951837 AluSx1 SINE - chrX:130952051-130952083 chrX 130952051 130952083 (AC)n Simple_repeat + chrX:130952254-130952607 chrX 130952254 130952607 MLT1A LTR - chrX:130952651-130953131 chrX 130952651 130953131 MLT1E1 LTR - chrX:130953133-130953165 chrX 130953133 130953165 (GATA)n Simple_repeat + chrX:130953285-130953579 chrX 130953285 130953579 AluYk3 SINE - chrX:130953777-130954133 chrX 130953777 130954133 HAL1 LINE - chrX:130954133-130954388 chrX 130954133 130954388 AluSz SINE + chrX:130954388-130954415 chrX 130954388 130954415 (AAAAT)n Simple_repeat + chrX:130954415-130954574 chrX 130954415 130954574 AluSz SINE + chrX:130954795-130954881 chrX 130954795 130954881 L2a LINE - chrX:130955274-130955375 chrX 130955274 130955375 L1ME3Cz LINE - chrX:130957073-130957104 chrX 130957073 130957104 (TG)n Simple_repeat + chrX:130957310-130957354 chrX 130957310 130957354 (TTTATA)n Simple_repeat + chrX:130957479-130957791 chrX 130957479 130957791 AluSx SINE + chrX:130957807-130957823 chrX 130957807 130957823 (AT)n Simple_repeat + chrX:130957823-130957861 chrX 130957823 130957861 (ATATAGC)n Simple_repeat + chrX:130958832-130958875 chrX 130958832 130958875 (CA)n Simple_repeat + chrX:130962361-130962500 chrX 130962361 130962500 L1PA3 LINE + chrX:130963495-130963518 chrX 130963495 130963518 (TA)n Simple_repeat + chrX:130963774-130963810 chrX 130963774 130963810 (TTAT)n Simple_repeat + chrX:131072836-131072906 chrX 131072836 131072906 Charlie1a DNA + chrX:131072894-131072983 chrX 131072894 131072983 5S rRNA - chrX:131415162-131415264 chrX 131415162 131415264 L1P2 LINE + chrX:131415262-131415432 chrX 131415262 131415432 L1MD LINE - chrX:131415435-131417136 chrX 131415435 131417136 Tigger1 DNA + chrX:132433405-132433442 chrX 132433405 132433442 A-rich Low_complexity + chrX:133305599-133305619 chrX 133305599 133305619 (AAT)n Simple_repeat + chrX:133681160-133681192 chrX 133681160 133681192 A-rich Low_complexity + chrX:134229256-134229284 chrX 134229256 134229284 G-rich Low_complexity + chrX:134560965-134561073 chrX 134560965 134561073 MIRb SINE - chrX:135949849-135950123 chrX 135949849 135950123 L1M5 LINE + chrX:14821812-14821835 chrX 14821812 14821835 (CTTT)n Simple_repeat + chrX:14837735-14837749 chrX 14837735 14837749 (TGTTTTT)n Simple_repeat + chrX:14838689-14838721 chrX 14838689 14838721 (ATATA)n Simple_repeat + chrX:14839259-14839292 chrX 14839259 14839292 A-rich Low_complexity + chrX:14852925-14852964 chrX 14852925 14852964 (TCA)n Simple_repeat + chrX:14854581-14854782 chrX 14854581 14854782 BLACKJACK DNA + chrX:14856046-14856248 chrX 14856046 14856248 MER3 DNA + chrX:14857424-14857449 chrX 14857424 14857449 (CAA)n Simple_repeat + chrX:14857437-14857466 chrX 14857437 14857466 GA-rich Low_complexity + chrX:14859055-14859144 chrX 14859055 14859144 MamRTE1 LINE + chrX:14859266-14859296 chrX 14859266 14859296 MIRc SINE - chrX:14859448-14859483 chrX 14859448 14859483 A-rich Low_complexity + chrX:14860812-14860854 chrX 14860812 14860854 (ATTTTA)n Simple_repeat + chrX:152071034-152071060 chrX 152071034 152071060 (AAATAA)n Simple_repeat + chrX:15695630-15695715 chrX 15695630 15695715 L1MC5 LINE + chrX:15696379-15696444 chrX 15696379 15696444 (TG)n Simple_repeat + chrX:15699871-15700076 chrX 15699871 15700076 MER20 DNA - chrX:15702435-15702522 chrX 15702435 15702522 L1PA13 LINE - chrX:15704601-15704796 chrX 15704601 15704796 Tigger19b DNA + chrX:15705071-15705185 chrX 15705071 15705185 L1PA16 LINE + chrX:16173022-16173089 chrX 16173022 16173089 CR1_Mam LINE - chrX:16173196-16173500 chrX 16173196 16173500 AluSp SINE - chrX:16175224-16175286 chrX 16175224 16175286 MIRc SINE - chrX:16175378-16175453 chrX 16175378 16175453 MADE2 DNA + chrX:16183257-16183299 chrX 16183257 16183299 (TCTT)n Simple_repeat + chrX:16183299-16183337 chrX 16183299 16183337 (TTCC)n Simple_repeat + chrX:16184319-16184364 chrX 16184319 16184364 (AATAAG)n Simple_repeat + chrX:16185518-16185544 chrX 16185518 16185544 (A)n Simple_repeat + chrX:16593114-16602071 chrX 16593114 16602071 MER4-int LTR + chrX:16601366-16601838 chrX 16601366 16601838 MER4A1 LTR + chrX:21673586-21673608 chrX 21673586 21673608 (T)n Simple_repeat + chrX:23719464-23719610 chrX 23719464 23719610 Tigger13a DNA + chrX:24096143-24096441 chrX 24096143 24096441 AluSx1 SINE - chrX:24096484-24096626 chrX 24096484 24096626 MER5B DNA - chrX:24096710-24096739 chrX 24096710 24096739 (TTTGC)n Simple_repeat + chrX:24559006-24559327 chrX 24559006 24559327 AluSz SINE - chrX:24559841-24559936 chrX 24559841 24559936 X9a_DNA DNA - chrX:24560033-24560086 chrX 24560033 24560086 L2a LINE + chrX:24560427-24560577 chrX 24560427 24560577 MIRc SINE - chrX:24560826-24561900 chrX 24560826 24561900 L1M6 LINE - chrX:24561547-24561865 chrX 24561547 24561865 AluSz SINE - chrX:24563871-24564058 chrX 24563871 24564058 L2a LINE - chrX:2530213-2530244 chrX 2530213 2530244 A-rich Low_complexity + chrX:2530851-2530969 chrX 2530851 2530969 AluSq2 SINE - chrX:2532702-2532748 chrX 2532702 2532748 (CAGTCA)n Simple_repeat + chrX:2532892-2532934 chrX 2532892 2532934 (TCTC)n Simple_repeat + chrX:2533303-2533347 chrX 2533303 2533347 (TTG)n Simple_repeat + chrX:2533424-2533596 chrX 2533424 2533596 MER45A DNA + chrX:2536513-2536566 chrX 2536513 2536566 (TC)n Simple_repeat + chrX:2536959-2537006 chrX 2536959 2537006 (TGT)n Simple_repeat + chrX:2538119-2538155 chrX 2538119 2538155 (ATT)n Simple_repeat + chrX:2538522-2538581 chrX 2538522 2538581 (TATATTAA)n Simple_repeat + chrX:2540911-2540954 chrX 2540911 2540954 (TTGTTTT)n Simple_repeat + chrX:2541035-2541203 chrX 2541035 2541203 MER45A DNA + chrX:2541447-2541477 chrX 2541447 2541477 (ACCCAA)n Simple_repeat + chrX:2541670-2541738 chrX 2541670 2541738 (GATTTTAA)n Simple_repeat + chrX:2544390-2544456 chrX 2544390 2544456 (TC)n Simple_repeat + chrX:3730444-3730466 chrX 3730444 3730466 (CTCC)n Simple_repeat + chrX:3732350-3732448 chrX 3732350 3732448 AluJr4 SINE - chrX:3763022-3763183 chrX 3763022 3763183 FRAM SINE + chrX:3763998-3764022 chrX 3763998 3764022 (CT)n Simple_repeat + chrX:3764058-3764338 chrX 3764058 3764338 AluJb SINE - chrX:3765226-3765321 chrX 3765226 3765321 MIRb SINE + chrX:3766477-3766619 chrX 3766477 3766619 MLT1C2 LTR + chrX:3769081-3769384 chrX 3769081 3769384 (AGAT)n Simple_repeat + chrX:3769088-3769135 chrX 3769088 3769135 (TAGTACA)n Simple_repeat + chrX:3769384-3769475 chrX 3769384 3769475 MLT1A LTR + chrX:3772174-3772218 chrX 3772174 3772218 (CTC)n Simple_repeat + chrX:3776891-3777684 chrX 3776891 3777684 AluJb SINE + chrX:3801446-3801607 chrX 3801446 3801607 FRAM SINE + chrX:3802422-3802446 chrX 3802422 3802446 (CT)n Simple_repeat + chrX:3802482-3802762 chrX 3802482 3802762 AluJb SINE - chrX:3803651-3803746 chrX 3803651 3803746 MIRb SINE + chrX:3804902-3805044 chrX 3804902 3805044 MLT1C2 LTR + chrX:3807506-3807809 chrX 3807506 3807809 (AGAT)n Simple_repeat + chrX:3807513-3807560 chrX 3807513 3807560 (TAGTACA)n Simple_repeat + chrX:3807809-3807900 chrX 3807809 3807900 MLT1A LTR + chrX:3810598-3810642 chrX 3810598 3810642 (CTC)n Simple_repeat + chrX:3815315-3816109 chrX 3815315 3816109 AluJb SINE + chrX:3840851-3840875 chrX 3840851 3840875 (CT)n Simple_repeat + chrX:3843330-3843472 chrX 3843330 3843472 MLT1C2 LTR + chrX:3845944-3845991 chrX 3845944 3845991 (TAGTACA)n Simple_repeat + chrX:3846240-3846331 chrX 3846240 3846331 MLT1A LTR + chrX:3849029-3849073 chrX 3849029 3849073 (CTC)n Simple_repeat + chrX:3853738-3853806 chrX 3853738 3853806 FLAM_C SINE + chrX:40594853-40594905 chrX 40594853 40594905 G-rich Low_complexity + chrX:40944615-40944670 chrX 40944615 40944670 (CGC)n Simple_repeat + chrX:45605930-45605977 chrX 45605930 45605977 (GGTA)n Simple_repeat + chrX:45605977-45606020 chrX 45605977 45606020 (TGGA)n Simple_repeat + chrX:45606020-45606064 chrX 45606020 45606064 (GGTA)n Simple_repeat + chrX:45606262-45606303 chrX 45606262 45606303 (CT)n Simple_repeat + chrX:45606852-45606895 chrX 45606852 45606895 A-rich Low_complexity + chrX:45608829-45608865 chrX 45608829 45608865 A-rich Low_complexity + chrX:45611578-45611614 chrX 45611578 45611614 (AC)n Simple_repeat + chrX:45612189-45612235 chrX 45612189 45612235 (AC)n Simple_repeat + chrX:45613376-45613415 chrX 45613376 45613415 (GT)n Simple_repeat + chrX:45614788-45614834 chrX 45614788 45614834 A-rich Low_complexity + chrX:45624674-45624774 chrX 45624674 45624774 L2a LINE - chrX:45633827-45633861 chrX 45633827 45633861 (AAAAT)n Simple_repeat + chrX:45634554-45634591 chrX 45634554 45634591 GA-rich Low_complexity + chrX:45636545-45636580 chrX 45636545 45636580 (GGTGGA)n Simple_repeat + chrX:45641566-45641688 chrX 45641566 45641688 MIR3 SINE - chrX:45642314-45642384 chrX 45642314 45642384 Charlie15a DNA - chrX:45643022-45643077 chrX 45643022 45643077 MER102c DNA - chrX:45654281-45654343 chrX 45654281 45654343 MIR3 SINE - chrX:45654684-45654701 chrX 45654684 45654701 (A)n Simple_repeat + chrX:45655350-45655434 chrX 45655350 45655434 L2a LINE + chrX:45660959-45661099 chrX 45660959 45661099 FLAM_C SINE + chrX:45661199-45661367 chrX 45661199 45661367 X7A_LINE LINE - chrX:45663844-45663878 chrX 45663844 45663878 (GAAATG)n Simple_repeat + chrX:45665190-45665275 chrX 45665190 45665275 L1ME2z LINE + chrX:45668290-45668332 chrX 45668290 45668332 (AC)n Simple_repeat + chrX:45670128-45670167 chrX 45670128 45670167 A-rich Low_complexity + chrX:45674576-45674661 chrX 45674576 45674661 MIR3 SINE - chrX:45675757-45675836 chrX 45675757 45675836 MIR3 SINE + chrX:45682023-45682052 chrX 45682023 45682052 (AC)n Simple_repeat + chrX:45686395-45686496 chrX 45686395 45686496 MER5A1 DNA - chrX:45686723-45686807 chrX 45686723 45686807 MIRb SINE - chrX:45690427-45690521 chrX 45690427 45690521 MIR3 SINE + chrX:45696896-45696956 chrX 45696896 45696956 (AC)n Simple_repeat + chrX:45698931-45698967 chrX 45698931 45698967 (TC)n Simple_repeat + chrX:45705932-45706074 chrX 45705932 45706074 AluSx SINE - chrX:45706473-45706801 chrX 45706473 45706801 AluJb SINE - chrX:45707072-45707348 chrX 45707072 45707348 AluSx1 SINE + chrX:45707348-45707374 chrX 45707348 45707374 (AAC)n Simple_repeat + chrX:45707799-45708093 chrX 45707799 45708093 AluSz6 SINE + chrX:45709498-45709516 chrX 45709498 45709516 (A)n Simple_repeat + chrX:45709585-45709632 chrX 45709585 45709632 (GT)n Simple_repeat + chrX:45709824-45709855 chrX 45709824 45709855 (CACCAC)n Simple_repeat + chrX:46406475-46406628 chrX 46406475 46406628 MIR SINE + chrX:46461880-46462054 chrX 46461880 46462054 MER5B DNA + chrX:46462991-46463303 chrX 46462991 46463303 AluSc8 SINE + chrX:46463303-46463323 chrX 46463303 46463323 (CAA)n Simple_repeat + chrX:46463462-46463493 chrX 46463462 46463493 (AAAACA)n Simple_repeat + chrX:47342879-47342888 chrX 47342879 47342888 (GTTTT)n Simple_repeat + chrX:48438080-48438168 chrX 48438080 48438168 MER46C DNA - chrX:48438782-48439081 chrX 48438782 48439081 AluSx1 SINE - chrX:48439343-48439461 chrX 48439343 48439461 MER46C DNA + chrX:50131905-50131960 chrX 50131905 50131960 MIRc SINE - chrX:50138577-50138612 chrX 50138577 50138612 MIR3 SINE + chrX:50142236-50142259 chrX 50142236 50142259 (TG)n Simple_repeat + chrX:50142375-50142402 chrX 50142375 50142402 (CTTTT)n Simple_repeat + chrX:50148525-50148556 chrX 50148525 50148556 (GA)n Simple_repeat + chrX:50165595-50165633 chrX 50165595 50165633 (AC)n Simple_repeat + chrX:51359943-51360034 chrX 51359943 51360034 L1ME4b LINE + chrX:54588505-54588778 chrX 54588505 54588778 AluSx1 SINE - chrX:54589076-54589242 chrX 54589076 54589242 AluSg SINE + chrX:54589272-54589353 chrX 54589272 54589353 MIRc SINE - chrX:54589364-54589423 chrX 54589364 54589423 MIR SINE - chrX:54589649-54589714 chrX 54589649 54589714 Tigger5b DNA + chrX:54589715-54589772 chrX 54589715 54589772 Tigger5b DNA - chrX:54589934-54590246 chrX 54589934 54590246 AluJb SINE + chrX:54590329-54590610 chrX 54590329 54590610 L1ME1 LINE - chrX:54590830-54591138 chrX 54590830 54591138 AluSg4 SINE - chrX:54591156-54591467 chrX 54591156 54591467 AluSx1 SINE - chrX:54591927-54592067 chrX 54591927 54592067 AluJr SINE - chrX:54592257-54592553 chrX 54592257 54592553 AluSz SINE - chrX:54592629-54592675 chrX 54592629 54592675 L1MB2 LINE - chrX:54592675-54592734 chrX 54592675 54592734 THE1C LTR + chrX:54592736-54592868 chrX 54592736 54592868 L1P4 LINE - chrX:54592874-54593215 chrX 54592874 54593215 L1MB3 LINE - chrX:54593222-54593364 chrX 54593222 54593364 AluJb SINE - chrX:54595928-54596035 chrX 54595928 54596035 L1M4 LINE + chrX:54845583-54845645 chrX 54845583 54845645 MIR SINE + chrX:54846714-54846837 chrX 54846714 54846837 MIR1_Amn SINE + chrX:54847356-54847549 chrX 54847356 54847549 MIRb SINE + chrX:54849111-54849191 chrX 54849111 54849191 (GAAT)n Simple_repeat + chrX:54849439-54849563 chrX 54849439 54849563 MER5A DNA - chrX:54849712-54849910 chrX 54849712 54849910 MIRb SINE + chrX:54850688-54850709 chrX 54850688 54850709 (TGTC)n Simple_repeat + chrX:54851201-54851246 chrX 54851201 54851246 (ACCAC)n Simple_repeat + chrX:54874662-54874684 chrX 54874662 54874684 (TA)n Simple_repeat + chrX:54877061-54877273 chrX 54877061 54877273 L1PA7 LINE + chrX:54877875-54877930 chrX 54877875 54877930 (AC)n Simple_repeat + chrX:54880328-54880378 chrX 54880328 54880378 (TTTA)n Simple_repeat + chrX:54895754-54895793 chrX 54895754 54895793 (T)n Simple_repeat + chrX:54898063-54898102 chrX 54898063 54898102 (TG)n Simple_repeat + chrX:54901808-54901882 chrX 54901808 54901882 Alu SINE + chrX:54912041-54912161 chrX 54912041 54912161 L1MDa LINE + chrX:54914321-54914365 chrX 54914321 54914365 (ATTAA)n Simple_repeat + chrX:54915953-54915993 chrX 54915953 54915993 U2 snRNA - chrX:54919357-54919403 chrX 54919357 54919403 (AAAAC)n Simple_repeat + chrX:54920022-54920156 chrX 54920022 54920156 MamGypLTR1d LTR - chrX:54927517-54927657 chrX 54927517 54927657 MER89-int LTR + chrX:54928601-54928714 chrX 54928601 54928714 MER81 DNA + chrX:54946700-54946849 chrX 54946700 54946849 MamTip1 DNA + chrX:56756307-56756439 chrX 56756307 56756439 L1MC5 LINE + chrX:56756666-56756976 chrX 56756666 56756976 AluSq2 SINE + chrX:56757354-56757424 chrX 56757354 56757424 L2a LINE - chrX:56757710-56758020 chrX 56757710 56758020 AluSx SINE + chrX:56758027-56758075 chrX 56758027 56758075 A-rich Low_complexity + chrX:56758128-56758344 chrX 56758128 56758344 MIR SINE - chrX:56758804-56759665 chrX 56758804 56759665 L1M5 LINE - chrX:56760677-56760993 chrX 56760677 56760993 LTR90B LTR + chrX:56761277-56761489 chrX 56761277 56761489 MIR SINE - chrX:56762378-56762395 chrX 56762378 56762395 (A)n Simple_repeat + chrX:56762698-56762998 chrX 56762698 56762998 AluSx1 SINE - chrX:56764020-56764191 chrX 56764020 56764191 Charlie2a DNA + chrX:56764641-56765647 chrX 56764641 56765647 MER21A LTR - chrX:56765273-56765570 chrX 56765273 56765570 MER39 LTR - chrX:56765671-56765733 chrX 56765671 56765733 (TA)n Simple_repeat + chrX:56765733-56765753 chrX 56765733 56765753 (GA)n Simple_repeat + chrX:56765793-56765940 chrX 56765793 56765940 MER21C LTR - chrX:56766721-56767082 chrX 56766721 56767082 L1M5 LINE - chrX:56771123-56771318 chrX 56771123 56771318 Tigger7 DNA - chrX:56771317-56771768 chrX 56771317 56771768 MER44C DNA - chrX:56771856-56772328 chrX 56771856 56772328 L1MC4 LINE - chrX:56772869-56773508 chrX 56772869 56773508 MLT1E2 LTR - chrX:56775557-56776456 chrX 56775557 56776456 MER20B DNA + chrX:56776087-56776382 chrX 56776087 56776382 AluJb SINE - chrX:56776705-56777412 chrX 56776705 56777412 L2 LINE + chrX:56777947-56778209 chrX 56777947 56778209 L1ME3 LINE - chrX:56778214-56778875 chrX 56778214 56778875 L1PA16 LINE - chrX:56779030-56779343 chrX 56779030 56779343 AluSz SINE - chrX:56779343-56779535 chrX 56779343 56779535 Tigger20a DNA + chrX:56779539-56780630 chrX 56779539 56780630 L2b LINE - chrX:56780631-56781372 chrX 56780631 56781372 L1M4 LINE + chrX:56783115-56783414 chrX 56783115 56783414 AluSz SINE + chrX:56783936-56783964 chrX 56783936 56783964 A-rich Low_complexity + chrX:56784097-56784170 chrX 56784097 56784170 GA-rich Low_complexity + chrX:56784485-56784778 chrX 56784485 56784778 AluSz SINE + chrX:56786836-56787145 chrX 56786836 56787145 AluSp SINE + chrX:56788394-56788596 chrX 56788394 56788596 HAL1M8 LINE - chrX:56788642-56788805 chrX 56788642 56788805 (CCTTTT)n Simple_repeat + chrX:56788671-56788790 chrX 56788671 56788790 (TCC)n Simple_repeat + chrX:56789198-56789348 chrX 56789198 56789348 (AC)n Simple_repeat + chrX:56789393-56789428 chrX 56789393 56789428 (ACACAG)n Simple_repeat + chrX:56791116-56791159 chrX 56791116 56791159 A-rich Low_complexity + chrX:56791490-56791520 chrX 56791490 56791520 (TTTTTC)n Simple_repeat + chrX:56792053-56792309 chrX 56792053 56792309 (TCTCCT)n Simple_repeat + chrX:56792078-56792249 chrX 56792078 56792249 (TCC)n Simple_repeat + chrX:56792559-56792633 chrX 56792559 56792633 L1MC5 LINE - chrX:56792764-56792927 chrX 56792764 56792927 (CA)n Simple_repeat + chrX:56797410-56797605 chrX 56797410 56797605 HAL1M8 LINE - chrX:56797659-56797890 chrX 56797659 56797890 (TTC)n Simple_repeat + chrX:56797890-56797962 chrX 56797890 56797962 (CCT)n Simple_repeat + chrX:56797962-56798013 chrX 56797962 56798013 (TTC)n Simple_repeat + chrX:56798266-56798342 chrX 56798266 56798342 L1MC5 LINE - chrX:56798508-56798615 chrX 56798508 56798615 (AC)n Simple_repeat + chrX:56802812-56803007 chrX 56802812 56803007 HAL1M8 LINE - chrX:56803061-56803292 chrX 56803061 56803292 (TTC)n Simple_repeat + chrX:56803292-56803364 chrX 56803292 56803364 (CCT)n Simple_repeat + chrX:56803364-56803415 chrX 56803364 56803415 (TTC)n Simple_repeat + chrX:56803668-56803744 chrX 56803668 56803744 L1MC5 LINE - chrX:56803910-56804017 chrX 56803910 56804017 (AC)n Simple_repeat + chrX:56808386-56808500 chrX 56808386 56808500 HAL1M8 LINE - chrX:56809393-56809432 chrX 56809393 56809432 (AC)n Simple_repeat + chrX:56810200-56810233 chrX 56810200 56810233 (TCCTT)n Simple_repeat + chrX:56810246-56810298 chrX 56810246 56810298 (AACA)n Simple_repeat + chrX:56812629-56812744 chrX 56812629 56812744 HAL1M8 LINE - chrX:56812881-56813164 chrX 56812881 56813164 (TTC)n Simple_repeat + chrX:56813603-56813767 chrX 56813603 56813767 (CACAGA)n Simple_repeat + chrX:56817908-56818023 chrX 56817908 56818023 HAL1M8 LINE - chrX:56818403-56818439 chrX 56818403 56818439 (T)n Simple_repeat + chrX:56822756-56822804 chrX 56822756 56822804 (CACTCT)n Simple_repeat + chrX:56823163-56823305 chrX 56823163 56823305 HAL1M8 LINE - chrX:56823414-56823789 chrX 56823414 56823789 (CTT)n Simple_repeat + chrX:56826169-56826218 chrX 56826169 56826218 A-rich Low_complexity + chrX:56827708-56827831 chrX 56827708 56827831 (TTCTTG)n Simple_repeat + chrX:56828410-56828449 chrX 56828410 56828449 (AC)n Simple_repeat + chrX:56828487-56828511 chrX 56828487 56828511 (CA)n Simple_repeat + chrX:56829361-56829394 chrX 56829361 56829394 (TCTTTT)n Simple_repeat + chrX:56830234-56830266 chrX 56830234 56830266 (AACAA)n Simple_repeat + chrX:56830266-56830279 chrX 56830266 56830279 (AACA)n Simple_repeat + chrX:56832178-56832226 chrX 56832178 56832226 (CATTCT)n Simple_repeat + chrX:56839205-56839256 chrX 56839205 56839256 (CTT)n Simple_repeat + chrX:56839415-56839618 chrX 56839415 56839618 L1PA5 LINE + chrX:56839710-56839785 chrX 56839710 56839785 L1MC5a LINE - chrX:56840926-56841223 chrX 56840926 56841223 AluSc8 SINE - chrX:56842554-56843324 chrX 56842554 56843324 L1ME3G LINE + chrX:56843333-56843357 chrX 56843333 56843357 (TAAA)n Simple_repeat + chrX:56843586-56843944 chrX 56843586 56843944 MamRep605 LTR? + chrX:56844124-56844162 chrX 56844124 56844162 (ATTT)n Simple_repeat + chrX:65815310-65815339 chrX 65815310 65815339 MIR3 SINE - chrX:70183186-70183205 chrX 70183186 70183205 (A)n Simple_repeat + chrX:70274956-70275254 chrX 70274956 70275254 AluSx4 SINE + chrX:70275535-70275730 chrX 70275535 70275730 MIR3 SINE - chrX:70275731-70275854 chrX 70275731 70275854 Tigger19b DNA + chrX:70276253-70276501 chrX 70276253 70276501 X6a_DNA DNA - chrX:70277559-70277822 chrX 70277559 70277822 AluJo SINE - chrX:70278250-70278384 chrX 70278250 70278384 AluJr4 SINE - chrX:70278721-70278786 chrX 70278721 70278786 (TACA)n Simple_repeat + chrX:70278738-70278770 chrX 70278738 70278770 (CA)n Simple_repeat + chrX:73164806-73164824 chrX 73164806 73164824 (GT)n Simple_repeat + chrX:73165007-73165294 chrX 73165007 73165294 L1ME4b LINE + chrX:73165433-73165663 chrX 73165433 73165663 L1ME3E LINE - chrX:73165957-73165984 chrX 73165957 73165984 (AG)n Simple_repeat + chrX:73165986-73166267 chrX 73165986 73166267 AluSx SINE - chrX:73166484-73166521 chrX 73166484 73166521 A-rich Low_complexity + chrX:73166775-73167088 chrX 73166775 73167088 AluSp SINE - chrX:73168349-73168391 chrX 73168349 73168391 AluSc5 SINE + chrX:73170072-73170923 chrX 73170072 73170923 L1MB4 LINE - chrX:73170101-73170309 chrX 73170101 73170309 L1MB5 LINE - chrX:73170310-73170717 chrX 73170310 73170717 Tigger2 DNA - chrX:73170707-73170772 chrX 73170707 73170772 Tigger2 DNA - chrX:73176969-73177197 chrX 73176969 73177197 Charlie1a DNA + chrX:73177200-73177361 chrX 73177200 73177361 FRAM SINE + chrX:73188705-73188821 chrX 73188705 73188821 AluSx1 SINE + chrX:73190374-73190693 chrX 73190374 73190693 AluSx3 SINE - chrX:73196605-73196974 chrX 73196605 73196974 L1MC3 LINE - chrX:73196972-73197180 chrX 73196972 73197180 L1MC LINE + chrX:73207332-73207376 chrX 73207332 73207376 (TTTTG)n Simple_repeat + chrX:73213549-73213602 chrX 73213549 73213602 MIR3 SINE - chrX:73213917-73213987 chrX 73213917 73213987 MER20 DNA + chrX:73214182-73214382 chrX 73214182 73214382 L1MC4a LINE - chrX:73214379-73214452 chrX 73214379 73214452 L1MD1 LINE - chrX:73217694-73226761 chrX 73217694 73226761 L1MA7 LINE + chrX:73218351-73218454 chrX 73218351 73218454 L1M3de LINE + chrX:73218689-73218733 chrX 73218689 73218733 (CTCCC)n Simple_repeat + chrX:73219584-73220715 chrX 73219584 73220715 L1M4c LINE + chrX:73420597-73420753 chrX 73420597 73420753 L1MD LINE - chrX:73420771-73421023 chrX 73420771 73421023 L1M5 LINE - chrX:73421017-73422590 chrX 73421017 73422590 L1MB7 LINE + chrX:73424337-73424357 chrX 73424337 73424357 (AAT)n Simple_repeat + chrX:73425026-73425071 chrX 73425026 73425071 (T)n Simple_repeat + chrX:73428951-73428980 chrX 73428951 73428980 (CAAA)n Simple_repeat + chrX:73430766-73430868 chrX 73430766 73430868 L1MA6 LINE + chrX:73430859-73431589 chrX 73430859 73431589 L1MC3 LINE + chrX:73431589-73432252 chrX 73431589 73432252 L1ME4a LINE + chrX:73433134-73433160 chrX 73433134 73433160 (CTCC)n Simple_repeat + chrX:73433337-73433423 chrX 73433337 73433423 L1PB3 LINE - chrX:73435440-73435571 chrX 73435440 73435571 Charlie4z DNA - chrX:73436212-73436441 chrX 73436212 73436441 L2 LINE + chrX:73437578-73437614 chrX 73437578 73437614 A-rich Low_complexity + chrX:73437908-73438093 chrX 73437908 73438093 MER117 DNA - chrX:73438199-73438257 chrX 73438199 73438257 L2d LINE + chrX:73438254-73438418 chrX 73438254 73438418 L2c LINE - chrX:73438653-73438752 chrX 73438653 73438752 MIRc SINE - chrX:73439690-73439719 chrX 73439690 73439719 (A)n Simple_repeat + chrX:73442042-73442125 chrX 73442042 73442125 MIR3 SINE + chrX:73442404-73442508 chrX 73442404 73442508 (AAGG)n Simple_repeat + chrX:73443118-73443142 chrX 73443118 73443142 (T)n Simple_repeat + chrX:73444198-73444359 chrX 73444198 73444359 L1M5 LINE + chrX:73453733-73453784 chrX 73453733 73453784 FLAM_C SINE + chrX:73453782-73453836 chrX 73453782 73453836 MER44C DNA + chrX:73453829-73453940 chrX 73453829 73453940 Tigger7 DNA + chrX:73456571-73456605 chrX 73456571 73456605 A-rich Low_complexity + chrX:73456902-73457050 chrX 73456902 73457050 AluJr4 SINE + chrX:73457772-73457789 chrX 73457772 73457789 (A)n Simple_repeat + chrX:73458513-73458554 chrX 73458513 73458554 (TA)n Simple_repeat + chrX:73467147-73467277 chrX 73467147 73467277 FLAM_A SINE + chrX:73468217-73468285 chrX 73468217 73468285 L1MB3 LINE + chrX:73470398-73470430 chrX 73470398 73470430 (TCTTTT)n Simple_repeat + chrX:73471283-73471724 chrX 73471283 73471724 MER21C LTR + chrX:73472780-73473197 chrX 73472780 73473197 MER68B LTR + chrX:73473723-73479761 chrX 73473723 73479761 HUERS-P3b-int LTR + chrX:73475981-73476369 chrX 73475981 73476369 LTR8 LTR - chrX:73481128-73481300 chrX 73481128 73481300 MamRep605 LTR? - chrX:73481747-73481870 chrX 73481747 73481870 FRAM SINE - chrX:73483842-73484068 chrX 73483842 73484068 L1MB2 LINE - chrX:73484885-73485001 chrX 73484885 73485001 MER20B DNA + chrX:73486604-73486892 chrX 73486604 73486892 MER102a DNA - chrX:73486919-73487011 chrX 73486919 73487011 MER112 DNA - chrX:73487011-73487308 chrX 73487011 73487308 MER2 DNA - chrX:73487377-73487441 chrX 73487377 73487441 (TATTC)n Simple_repeat + chrX:73487688-73487798 chrX 73487688 73487798 MER2B DNA - chrX:73487840-73488065 chrX 73487840 73488065 Charlie8 DNA + chrX:73489379-73489708 chrX 73489379 73489708 MER2 DNA - chrX:73490445-73490563 chrX 73490445 73490563 AluJr4 SINE + chrX:73490568-73490598 chrX 73490568 73490598 (TAAA)n Simple_repeat + chrX:73492199-73492400 chrX 73492199 73492400 MER58A DNA + chrX:73492851-73493226 chrX 73492851 73493226 L1M5 LINE + chrX:73493350-73493662 chrX 73493350 73493662 AluJb SINE + chrX:73493662-73493714 chrX 73493662 73493714 A-rich Low_complexity + chrX:73494718-73494905 chrX 73494718 73494905 MER58A DNA + chrX:73495121-73495330 chrX 73495121 73495330 AluJr SINE - chrX:73496842-73497132 chrX 73496842 73497132 AluJb SINE + chrX:73497631-73497803 chrX 73497631 73497803 AluJb SINE + chrX:73497960-73497988 chrX 73497960 73497988 (T)n Simple_repeat + chrX:73498490-73498620 chrX 73498490 73498620 AluJo SINE - chrX:73498963-73499102 chrX 73498963 73499102 FLAM_C SINE + chrX:73499125-73499332 chrX 73499125 73499332 MIRb SINE + chrX:73499826-73499991 chrX 73499826 73499991 MER58A DNA - chrX:73504904-73505379 chrX 73504904 73505379 L1ME2z LINE + chrX:73504918-73505262 chrX 73504918 73505262 Tigger3a DNA + chrX:73506170-73506218 chrX 73506170 73506218 MADE1 DNA + chrX:73506221-73506355 chrX 73506221 73506355 MER58A DNA - chrX:73506992-73507159 chrX 73506992 73507159 L2c LINE - chrX:73507950-73508375 chrX 73507950 73508375 CR1_Mam LINE - chrX:73508544-73508669 chrX 73508544 73508669 FLAM_C SINE + chrX:73509602-73509723 chrX 73509602 73509723 L1ME4a LINE + chrX:73510142-73510278 chrX 73510142 73510278 L1M5 LINE + chrX:73510728-73510985 chrX 73510728 73510985 MIR SINE + chrX:73511009-73511305 chrX 73511009 73511305 AluSz6 SINE + chrX:73513248-73513283 chrX 73513248 73513283 GA-rich Low_complexity + chrX:74272331-74272641 chrX 74272331 74272641 AluSz6 SINE + chrX:75398421-75398441 chrX 75398421 75398441 (A)n Simple_repeat + chrX:75398469-75398664 chrX 75398469 75398664 AluSx3 SINE - chrX:75398664-75403569 chrX 75398664 75403569 L1P3 LINE - chrX:75404419-75405493 chrX 75404419 75405493 MLT1E1A LTR + chrX:75405113-75405282 chrX 75405113 75405282 MLT1-int LTR + chrX:75405528-75406022 chrX 75405528 75406022 MER97c DNA - chrX:75406241-75408442 chrX 75406241 75408442 L1PA16 LINE - chrX:75406667-75406945 chrX 75406667 75406945 AluSz6 SINE - chrX:75408445-75408637 chrX 75408445 75408637 MLT1J1 LTR - chrX:78013708-78013763 chrX 78013708 78013763 (ATTAG)n Simple_repeat + chrX:78013714-78013751 chrX 78013714 78013751 (TTAAG)n Simple_repeat + chrX:7895917-7896054 chrX 7895917 7896054 MIR1_Amn SINE + chrX:7896730-7896807 chrX 7896730 7896807 MER5A1 DNA + chrX:7896835-7897191 chrX 7896835 7897191 MLT1A0 LTR + chrX:7899281-7899306 chrX 7899281 7899306 (AGAC)n Simple_repeat + chrX:7918867-7918888 chrX 7918867 7918888 (GT)n Simple_repeat + chrX:7925186-7925208 chrX 7925186 7925208 (GAG)n Simple_repeat + chrX:7927315-7927333 chrX 7927315 7927333 (TA)n Simple_repeat + chrX:7927367-7927389 chrX 7927367 7927389 (TTCCTC)n Simple_repeat + chrX:7929249-7929286 chrX 7929249 7929286 GA-rich Low_complexity + chrX:7997301-7997327 chrX 7997301 7997327 (GT)n Simple_repeat + chrX:8009733-8009754 chrX 8009733 8009754 (AC)n Simple_repeat + chrX:8015432-8015457 chrX 8015432 8015457 (AACA)n Simple_repeat + chrX:8024113-8024144 chrX 8024113 8024144 (CT)n Simple_repeat + chrX:8024143-8024169 chrX 8024143 8024169 (CA)n Simple_repeat + chrX:8042722-8042747 chrX 8042722 8042747 (TC)n Simple_repeat + chrX:8048439-8048460 chrX 8048439 8048460 (T)n Simple_repeat + chrX:8053292-8053311 chrX 8053292 8053311 (TG)n Simple_repeat + chrX:8059835-8059855 chrX 8059835 8059855 (T)n Simple_repeat + chrX:8106735-8106754 chrX 8106735 8106754 (GTT)n Simple_repeat + chrX:8121208-8121231 chrX 8121208 8121231 (AC)n Simple_repeat + chrX:8139463-8139486 chrX 8139463 8139486 (TG)n Simple_repeat + chrX:84347048-84347125 chrX 84347048 84347125 Kanga1c DNA - chrX:84347142-84347242 chrX 84347142 84347242 Tigger19a DNA + chrX:93821350-93821375 chrX 93821350 93821375 (T)n Simple_repeat + chrX:93823886-93823945 chrX 93823886 93823945 (TGTGTG)n Simple_repeat + chrX:93845650-93845701 chrX 93845650 93845701 A-rich Low_complexity + chrX:93847846-93848026 chrX 93847846 93848026 MLT1D LTR + chrX:93851186-93851250 chrX 93851186 93851250 (TA)n Simple_repeat + chrX:93851577-93851618 chrX 93851577 93851618 A-rich Low_complexity + chrX:93853955-93853988 chrX 93853955 93853988 (ATAC)n Simple_repeat + chrX:93856187-93856217 chrX 93856187 93856217 (AC)n Simple_repeat + chrX:93872852-93872880 chrX 93872852 93872880 (TATAA)n Simple_repeat + chrX:93874004-93874080 chrX 93874004 93874080 Tigger3b DNA + chrX:93878085-93878121 chrX 93878085 93878121 (AAAAT)n Simple_repeat + chrX:93881349-93881386 chrX 93881349 93881386 (TG)n Simple_repeat + chrX:93884151-93884260 chrX 93884151 93884260 MER34A LTR + chrX:93884655-93884775 chrX 93884655 93884775 L1MC LINE - chrX:93886959-93886988 chrX 93886959 93886988 (TTAT)n Simple_repeat + chrX:93887578-93887618 chrX 93887578 93887618 (TATGTA)n Simple_repeat + chrX:93888620-93888659 chrX 93888620 93888659 (AG)n Simple_repeat + chrX:93895272-93895487 chrX 93895272 93895487 MIR SINE + chrX:93896018-93896066 chrX 93896018 93896066 A-rich Low_complexity + chrX:93896067-93896167 chrX 93896067 93896167 MARNA DNA - chrX:93898590-93898618 chrX 93898590 93898618 (T)n Simple_repeat + chrX:93911019-93911114 chrX 93911019 93911114 MER34 LTR - chrX:93915306-93916101 chrX 93915306 93916101 MER31B LTR + chrX:93915432-93915802 chrX 93915432 93915802 MER57E1 LTR - chrX:93916691-93916740 chrX 93916691 93916740 L2a LINE + chrX:93918417-93918513 chrX 93918417 93918513 (ATAT)n Simple_repeat + chrX:93918423-93918460 chrX 93918423 93918460 (TATG)n Simple_repeat + chrX:93918543-93918997 chrX 93918543 93918997 L1P5 LINE - chrX:93918988-93919990 chrX 93918988 93919990 L1M1 LINE - chrX:93922417-93922472 chrX 93922417 93922472 (TATA)n Simple_repeat + chrX:93948065-93950301 chrX 93948065 93950301 L1P4a LINE - chrX:93950404-93950776 chrX 93950404 93950776 L1MC LINE - chrX:93950777-93950935 chrX 93950777 93950935 MLT1B LTR + chrX:93950936-93951218 chrX 93950936 93951218 MLT2B1 LTR + chrX:93951223-93961592 chrX 93951223 93961592 MER4-int LTR + chrX:93952195-93952607 chrX 93952195 93952607 MER4A LTR - chrX:93953158-93953388 chrX 93953158 93953388 PABL_B LTR + chrX:93953392-93953567 chrX 93953392 93953567 MER4A LTR - chrX:94103446-94103490 chrX 94103446 94103490 (TACA)n Simple_repeat + chrX:94103479-94103524 chrX 94103479 94103524 (AT)n Simple_repeat + chrX:94194218-94194244 chrX 94194218 94194244 (A)n Simple_repeat + chrX:94194538-94194562 chrX 94194538 94194562 (ATAA)n Simple_repeat + chrX:99881188-99881214 chrX 99881188 99881214 (TCAT)n Simple_repeat + chrY:16010089-16010204 chrY 16010089 16010204 L2a LINE - chrY:166145-166437 chrY 166145 166437 AluSg4 SINE + chrY:21153221-21153521 chrY 21153221 21153521 AluSx1 SINE + chrY:2159750-2160080 chrY 2159750 2160080 AluSx SINE - chrY:2160996-2161123 chrY 2160996 2161123 FLAM_C SINE - chrY:2162302-2162438 chrY 2162302 2162438 AluSx SINE + chrY:2163627-2163646 chrY 2163627 2163646 GA-rich Low_complexity + chrY:2164050-2164132 chrY 2164050 2164132 L2b LINE + chrY:2164379-2164442 chrY 2164379 2164442 G-rich Low_complexity + chrY:2165175-2165463 chrY 2165175 2165463 AluJb SINE - chrY:2165675-2165774 chrY 2165675 2165774 AluJr SINE - chrY:2165780-2166096 chrY 2165780 2166096 AluSx1 SINE - chrY:2166642-2166678 chrY 2166642 2166678 (AC)n Simple_repeat + chrY:2168319-2168408 chrY 2168319 2168408 MLT1B LTR + chrY:2169678-2169976 chrY 2169678 2169976 AluSg SINE - chrY:2174499-2174690 chrY 2174499 2174690 AluSz SINE - chrY:2176787-2176946 chrY 2176787 2176946 GA-rich Low_complexity + chrY:2178569-2178602 chrY 2178569 2178602 (TG)n Simple_repeat + chrY:2183903-2184202 chrY 2183903 2184202 AluSx1 SINE - chrY:2184735-2184862 chrY 2184735 2184862 MER85 DNA + chrY:2185000-2185297 chrY 2185000 2185297 AluSx SINE - chrY:2185297-2185592 chrY 2185297 2185592 AluSx SINE - chrY:2187032-2187160 chrY 2187032 2187160 MER58B DNA + chrY:2187879-2188169 chrY 2187879 2188169 AluSp SINE - chrY:2188179-2188271 chrY 2188179 2188271 MER58B DNA + chrY:2188329-2188636 chrY 2188329 2188636 AluSz SINE - chrY:2189772-2189987 chrY 2189772 2189987 Tigger2a DNA + chrY:2190027-2190299 chrY 2190027 2190299 L1PB1 LINE - chrY:2190656-2190724 chrY 2190656 2190724 AluSz SINE - chrY:2190733-2190951 chrY 2190733 2190951 Tigger2 DNA + chrY:2190955-2191133 chrY 2190955 2191133 AluSg4 SINE - chrY:2191183-2191279 chrY 2191183 2191279 MIR SINE - chrY:2191904-2191943 chrY 2191904 2191943 LTR9 LTR + chrY:2191943-2192115 chrY 2191943 2192115 AluJb SINE + chrY:2192798-2193113 chrY 2192798 2193113 AluSg SINE - chrY:2193113-2193275 chrY 2193113 2193275 LTR9 LTR + chrY:2194844-2195153 chrY 2194844 2195153 AluSq2 SINE - chrY:2196131-2196356 chrY 2196131 2196356 MLT1B LTR + chrY:2198092-2198142 chrY 2198092 2198142 GA-rich Low_complexity + chrY:2198142-2198172 chrY 2198142 2198172 (GA)n Simple_repeat + chrY:2198172-2198281 chrY 2198172 2198281 GA-rich Low_complexity + chrY:2199045-2199160 chrY 2199045 2199160 MIRb SINE + chrY:2199161-2199469 chrY 2199161 2199469 Tigger1 DNA - chrY:2199477-2199790 chrY 2199477 2199790 AluSq2 SINE - chrY:2201232-2201335 chrY 2201232 2201335 Tigger3 DNA - chrY:2201473-2201753 chrY 2201473 2201753 AluSg4 SINE - chrY:2202211-2202493 chrY 2202211 2202493 AluSx1 SINE - chrY:2202498-2202774 chrY 2202498 2202774 AluJo SINE - chrY:2203508-2203792 chrY 2203508 2203792 AluSc SINE - chrY:2204037-2204343 chrY 2204037 2204343 AluSc SINE - chrY:2204628-2205144 chrY 2204628 2205144 AluSg SINE - chrY:2204902-2205031 chrY 2204902 2205031 L1PA8 LINE - chrY:2205186-2205309 chrY 2205186 2205309 MLT1C2 LTR + chrY:2207176-2207476 chrY 2207176 2207476 AluSx SINE - chrY:2208390-2208480 chrY 2208390 2208480 L1PB1 LINE - chrY:2208480-2208502 chrY 2208480 2208502 (GT)n Simple_repeat + chrY:2209299-2209697 chrY 2209299 2209697 MLT1C2 LTR - chrY:2209836-2210146 chrY 2209836 2210146 AluSq2 SINE - chrY:2212913-2212956 chrY 2212913 2212956 (AT)n Simple_repeat + chrY:2213213-2213401 chrY 2213213 2213401 MLT2B4 LTR + chrY:2214686-2215087 chrY 2214686 2215087 L1PA7 LINE - chrY:2216733-2217033 chrY 2216733 2217033 AluSx1 SINE - chrY:2217342-2217394 chrY 2217342 2217394 AluSc5 SINE + chrY:2219788-2220060 chrY 2219788 2220060 AluSx1 SINE - chrY:2221625-2221904 chrY 2221625 2221904 AluSp SINE - chrY:2222502-2222800 chrY 2222502 2222800 AluSx4 SINE - chrY:2223589-2223639 chrY 2223589 2223639 MADE1 DNA + chrY:2225493-2225692 chrY 2225493 2225692 HAL1ME LINE + chrY:2225741-2225764 chrY 2225741 2225764 (A)n Simple_repeat + chrY:2226211-2226455 chrY 2226211 2226455 L1PREC2 LINE + chrY:2226456-2226611 chrY 2226456 2226611 AluYk2 SINE + chrY:2226612-2226797 chrY 2226612 2226797 MIR SINE - chrY:2226874-2227007 chrY 2226874 2227007 AluYf1 SINE + chrY:2232244-2232475 chrY 2232244 2232475 MER20 DNA + chrY:2234637-2234930 chrY 2234637 2234930 AluJo SINE - chrY:2235790-2235892 chrY 2235790 2235892 L1ME3Cz LINE + chrY:2236397-2236499 chrY 2236397 2236499 L1ME3Cz LINE + chrY:2236902-2237011 chrY 2236902 2237011 AluYk2 SINE + chrY:2253012-2253145 chrY 2253012 2253145 AluSc SINE + chrY:2253151-2253204 chrY 2253151 2253204 (TG)n Simple_repeat + chrY:2253204-2253228 chrY 2253204 2253228 (TACA)n Simple_repeat + chrY:2253233-2253269 chrY 2253233 2253269 (CATCAT)n Simple_repeat + chrY:2253942-2254151 chrY 2253942 2254151 MER58A DNA - chrY:2254197-2254239 chrY 2254197 2254239 (TTAT)n Simple_repeat + chrY:2254246-2254278 chrY 2254246 2254278 (GAGA)n Simple_repeat + chrY:2254278-2254559 chrY 2254278 2254559 AluSx SINE - chrY:2257817-2258121 chrY 2257817 2258121 AluSz SINE - chrY:2258136-2258185 chrY 2258136 2258185 L1MB3 LINE - chrY:2258185-2258477 chrY 2258185 2258477 AluSp SINE - chrY:2258497-2258958 chrY 2258497 2258958 L1MB3 LINE - chrY:2259702-2259989 chrY 2259702 2259989 AluSx SINE + chrY:2260398-2260537 chrY 2260398 2260537 FLAM_C SINE + chrY:2263940-2264382 chrY 2263940 2264382 MLT1C2 LTR - chrY:2264406-2264682 chrY 2264406 2264682 AluSx1 SINE - chrY:2264692-2264804 chrY 2264692 2264804 MLT1C2 LTR - chrY:2264806-2264944 chrY 2264806 2264944 AluSp SINE - chrY:2265048-2265318 chrY 2265048 2265318 AluJb SINE - chrY:2265319-2265474 chrY 2265319 2265474 AluJr4 SINE - chrY:2265971-2266003 chrY 2265971 2266003 (CA)n Simple_repeat + chrY:2266351-2266386 chrY 2266351 2266386 (CTCTAA)n Simple_repeat + chrY:2266425-2266514 chrY 2266425 2266514 AluJr4 SINE + chrY:2266665-2266709 chrY 2266665 2266709 L1MC LINE + chrY:2266711-2266885 chrY 2266711 2266885 AluSz SINE - chrY:2266885-2267150 chrY 2266885 2267150 AluYm1 SINE - chrY:2267447-2267465 chrY 2267447 2267465 (A)n Simple_repeat + chrY:2267797-2268100 chrY 2267797 2268100 AluJr SINE + chrY:2268598-2268700 chrY 2268598 2268700 L2a LINE - chrY:2269149-2269451 chrY 2269149 2269451 AluSx1 SINE - chrY:2270920-2271221 chrY 2270920 2271221 AluSz SINE - chrY:2272186-2272360 chrY 2272186 2272360 MER5A DNA - chrY:2274469-2274775 chrY 2274469 2274775 AluSx1 SINE - chrY:2275245-2275742 chrY 2275245 2275742 LTR22C0 LTR - chrY:2276146-2276414 chrY 2276146 2276414 AluSg SINE - chrY:2277315-2277597 chrY 2277315 2277597 L1PA7 LINE - chrY:2277760-2278071 chrY 2277760 2278071 AluSx1 SINE - chrY:2279302-2279617 chrY 2279302 2279617 AluSg SINE + chrY:2279618-2279768 chrY 2279618 2279768 AluSg4 SINE + chrY:2279768-2279806 chrY 2279768 2279806 (AAAAC)n Simple_repeat + chrY:2280304-2280424 chrY 2280304 2280424 AluSq SINE - chrY:2280955-2281264 chrY 2280955 2281264 AluSc SINE + chrY:2284509-2284690 chrY 2284509 2284690 MER58A DNA + chrY:2286550-2286604 chrY 2286550 2286604 (ATTAAGA)n Simple_repeat + chrY:2288167-2288453 chrY 2288167 2288453 AluSc8 SINE + chrY:2288453-2288494 chrY 2288453 2288494 (AAT)n Simple_repeat + chrY:2288503-2288815 chrY 2288503 2288815 AluSc SINE + chrY:2289139-2289425 chrY 2289139 2289425 AluSz SINE + chrY:2290314-2290601 chrY 2290314 2290601 AluSc5 SINE - chrY:2291171-2291482 chrY 2291171 2291482 AluSx1 SINE + chrY:2292003-2292377 chrY 2292003 2292377 MLT1B LTR + chrY:2292381-2292658 chrY 2292381 2292658 MLT1B LTR + chrY:2292899-2293212 chrY 2292899 2293212 AluSz SINE + chrY:2297333-2297380 chrY 2297333 2297380 (TG)n Simple_repeat + chrY:2298239-2298315 chrY 2298239 2298315 Alu SINE + chrY:2303817-2303844 chrY 2303817 2303844 (AATA)n Simple_repeat + chrY:2304461-2304501 chrY 2304461 2304501 MADE1 DNA - chrY:2304502-2304540 chrY 2304502 2304540 (TAT)n Simple_repeat + chrY:2304842-2304959 chrY 2304842 2304959 AluJr SINE - chrY:2305704-2305739 chrY 2305704 2305739 (AG)n Simple_repeat + chrY:2305739-2305775 chrY 2305739 2305775 (GT)n Simple_repeat + chrY:2306344-2306368 chrY 2306344 2306368 (CA)n Simple_repeat + chrY:2306757-2306794 chrY 2306757 2306794 GA-rich Low_complexity + chrY:2307224-2307269 chrY 2307224 2307269 A-rich Low_complexity + chrY:2308561-2308637 chrY 2308561 2308637 AluYa5 SINE - chrY:2309770-2309828 chrY 2309770 2309828 L1P4 LINE + chrY:2310436-2310494 chrY 2310436 2310494 (ATATA)n Simple_repeat + chrY:2310494-2310526 chrY 2310494 2310526 (TA)n Simple_repeat + chrY:2313521-2313583 chrY 2313521 2313583 MLT1A0 LTR + chrY:2316378-2316402 chrY 2316378 2316402 (AAATT)n Simple_repeat + chrY:2317547-2317700 chrY 2317547 2317700 AluJb SINE - chrY:2318168-2318213 chrY 2318168 2318213 A-rich Low_complexity + chrY:2327591-2327621 chrY 2327591 2327621 (TA)n Simple_repeat + chrY:2327621-2327656 chrY 2327621 2327656 (CA)n Simple_repeat + chrY:2329581-2329749 chrY 2329581 2329749 AluJb SINE - chrY:2330225-2330267 chrY 2330225 2330267 A-rich Low_complexity + chrY:2331242-2331372 chrY 2331242 2331372 AluSz SINE + chrY:2351128-2351293 chrY 2351128 2351293 AluJb SINE - chrY:2354362-2354391 chrY 2354362 2354391 (AAT)n Simple_repeat + chrY:2355409-2355670 chrY 2355409 2355670 AluSx SINE - chrY:2356226-2356515 chrY 2356226 2356515 AluSx SINE - chrY:2359107-2359410 chrY 2359107 2359410 AluSx1 SINE - chrY:2360149-2360480 chrY 2360149 2360480 MLT1C2 LTR + chrY:2361356-2361382 chrY 2361356 2361382 (CAT)n Simple_repeat + chrY:2361495-2361529 chrY 2361495 2361529 (TTA)n Simple_repeat + chrY:2361574-2361608 chrY 2361574 2361608 (ATT)n Simple_repeat + chrY:2361642-2361683 chrY 2361642 2361683 (TTA)n Simple_repeat + chrY:2362167-2362195 chrY 2362167 2362195 (TAT)n Simple_repeat + chrY:2362298-2362326 chrY 2362298 2362326 (TTA)n Simple_repeat + chrY:2362368-2362388 chrY 2362368 2362388 (TAT)n Simple_repeat + chrY:2362421-2362453 chrY 2362421 2362453 (TTA)n Simple_repeat + chrY:2362664-2362689 chrY 2362664 2362689 (TAT)n Simple_repeat + chrY:2362852-2362897 chrY 2362852 2362897 (TTA)n Simple_repeat + chrY:2363873-2364091 chrY 2363873 2364091 Charlie1a DNA + chrY:2364227-2364539 chrY 2364227 2364539 AluSx SINE - chrY:2364562-2364682 chrY 2364562 2364682 L1PB1 LINE + chrY:2364842-2364897 chrY 2364842 2364897 (TTTATA)n Simple_repeat + chrY:2367528-2367799 chrY 2367528 2367799 AluJb SINE + chrY:2367806-2368019 chrY 2367806 2368019 AluJo SINE + chrY:2368066-2368086 chrY 2368066 2368086 (AAT)n Simple_repeat + chrY:2368779-2368846 chrY 2368779 2368846 (CCCCCGC)n Simple_repeat + chrY:2480213-2480244 chrY 2480213 2480244 A-rich Low_complexity + chrY:2480851-2480969 chrY 2480851 2480969 AluSq SINE - chrY:2482702-2482748 chrY 2482702 2482748 (CAGTCA)n Simple_repeat + chrY:2482892-2482934 chrY 2482892 2482934 (TCTC)n Simple_repeat + chrY:2483303-2483347 chrY 2483303 2483347 (TTG)n Simple_repeat + chrY:2483424-2483596 chrY 2483424 2483596 MER45A DNA + chrY:2486513-2486566 chrY 2486513 2486566 (TC)n Simple_repeat + chrY:2486959-2487006 chrY 2486959 2487006 (TGT)n Simple_repeat + chrY:2488119-2488155 chrY 2488119 2488155 (ATT)n Simple_repeat + chrY:2488522-2488581 chrY 2488522 2488581 (TATATTAA)n Simple_repeat + chrY:2490911-2490954 chrY 2490911 2490954 (TTGTTTT)n Simple_repeat + chrY:2491035-2491203 chrY 2491035 2491203 MER45A DNA + chrY:2491447-2491477 chrY 2491447 2491477 (ACCCAA)n Simple_repeat + chrY:2491670-2491738 chrY 2491670 2491738 (GATTTTAA)n Simple_repeat + chrY:2494390-2494456 chrY 2494390 2494456 (TC)n Simple_repeat + chrY:2519713-2519737 chrY 2519713 2519737 (GAA)n Simple_repeat + chrY:59100572-59100608 chrY 59100572 59100608 (TTTTG)n Simple_repeat + chrY:59105975-59106009 chrY 59105975 59106009 (AT)n Simple_repeat + chrY:59215521-59215602 chrY 59215521 59215602 OldhAT1 DNA + chrY:59215684-59215846 chrY 59215684 59215846 L2c LINE + chrY:59218092-59218136 chrY 59218092 59218136 U2 snRNA + chrY:59218744-59218799 chrY 59218744 59218799 (TTCTC)n Simple_repeat + chrY:59218804-59218849 chrY 59218804 59218849 MIRc SINE - chrY:59219648-59219701 chrY 59219648 59219701 (TTTCTG)n Simple_repeat + chrY:59219766-59219919 chrY 59219766 59219919 L2 LINE + chrY:59220664-59220732 chrY 59220664 59220732 MIRc SINE + chrY:59220979-59221130 chrY 59220979 59221130 MER5A DNA + chrY:59221429-59221680 chrY 59221429 59221680 MIR SINE + chrY:59221876-59221907 chrY 59221876 59221907 (GT)n Simple_repeat + chrY:59221907-59221918 chrY 59221907 59221918 (GTGTAT)n Simple_repeat +