# STOCKHOLM 1.0 #=GF AU Infernal 1.1 #=GS NT_004487.20/24249351-24249275 DE Homo sapiens chromosome 1 genomic scaffold, GRCh38.p12 Primary Assembly HSCHR1_CTG31 #=GS NG_007384.1/89672-89748 DE Homo sapiens CD247 molecule (CD247), RefSeqGene (LRG_36) on chromosome 1 #=GS NC_000001.11/167433938-167433862 DE Homo sapiens chromosome 1, GRCh38.p12 Primary Assembly #=GS NC_027868.1/146652032-146651956 DE Pan paniscus isolate Ulindi chromosome 1, panpan1.1, whole genome shotgun sequence #=GS NW_014013792.1/5773354-5773278 DE Pan paniscus isolate Ulindi chromosome 1 genomic scaffold, panpan1.1 scf1120388623456a, whole genome shotgun sequence #=GS NC_036879.1/142472353-142472277 DE Pan troglodytes isolate Yerkes chimp pedigree #C0471 (Clint) chromosome 1, Clint_PTRv2, whole genome shotgun sequence #=GS NC_018424.2/146421475-146421399 DE Gorilla gorilla gorilla chromosome 1, gorGor4, whole genome shotgun sequence #=GS NW_019932792.1/61058881-61058957 DE Pan troglodytes isolate Yerkes chimp pedigree #C0471 (Clint) chromosome 1 genomic scaffold, Clint_PTRv2 Scaffold_29_80m, whole genome shotgun sequence #=GS NW_017493678.1/22130877-22130801 DE Gorilla gorilla gorilla chromosome 1 genomic scaffold, gorGor4, whole genome shotgun sequence #=GS NW_012113808.1/7691416-7691340 DE Colobus angolensis palliatus isolate OR3802 unplaced genomic scaffold, Cang.pa_1.0 Scaffold126, whole genome shotgun sequence #=GS NW_019317079.1/4327655-4327579 DE Piliocolobus tephrosceles isolate RC106 unplaced genomic scaffold, ASM277652v1 PDMG01000757.1, whole genome shotgun sequence #=GS NW_006785816.1/1297020-1296941 DE Lipotes vexillifer unplaced genomic scaffold, Lipotes_vexillifer_v1 scaffold189, whole genome shotgun sequence #=GS NC_036903.1/82952969-82953045 DE Pongo abelii isolate Susie chromosome 1, Susie_PABv2, whole genome shotgun sequence #=GS NW_019937203.1/19709154-19709078 DE Pongo abelii isolate Susie chromosome 1 genomic scaffold, Susie_PABv2 Scaffold_2_102m, whole genome shotgun sequence #=GS NW_019873626.1/1415407-1415328 DE Physeter catodon isolate SW-GA unplaced genomic scaffold, ASM283717v1 scaffold74, whole genome shotgun sequence #=GS NW_005370460.1/3423383-3423310 DE Myotis brandtii unplaced genomic scaffold, ASM41265v1 scaffold64, whole genome shotgun sequence #=GS NW_014804585.1/2858556-2858632 DE Macaca mulatta isolate 17573 chromosome 1 genomic scaffold, Mmul_8.0.1, whole genome shotgun sequence #=GS NW_005092959.1/25399408-25399332 DE Macaca fascicularis chromosome 1 genomic scaffold, Macaca_fascicularis_5.0, whole genome shotgun sequence #=GS NW_018753644.1/1089176-1089252 DE Papio anubis isolate 1X1155 chromosome 1 genomic scaffold, Panu_3.0, whole genome shotgun sequence #=GS NC_027893.1/200245346-200245422 DE Macaca mulatta isolate 17573 chromosome 1, Mmul_8.0.1, whole genome shotgun sequence #=GS NW_020251504.1/198078050-198078126 DE Theropithecus gelada isolate Dixy chromosome 1 genomic scaffold, Tgel_1.0, whole genome shotgun sequence #=GS NC_018152.2/193198324-193198400 DE Papio anubis isolate 1X1155 chromosome 1, Panu_3.0, whole genome shotgun sequence #=GS NC_022272.1/25399408-25399332 DE Macaca fascicularis chromosome 1, Macaca_fascicularis_5.0, whole genome shotgun sequence #=GS NW_012011511.1/4474036-4473960 DE Macaca nemestrina isolate M95218 unplaced genomic scaffold, Mnem_1.0 Scaffold184, whole genome shotgun sequence #=GS NC_037668.1/198078050-198078126 DE Theropithecus gelada isolate Dixy chromosome 1, Tgel_1.0, whole genome shotgun sequence #=GS NW_020173022.1/398230-398151 DE Neophocaena asiaeorientalis asiaeorientalis breed wild unplaced genomic scaffold, Neophocaena_asiaeorientalis_V1 scaffold99, whole genome shotgun sequence #=GS NW_012002568.1/3377501-3377577 DE Cercocebus atys isolate FAK unplaced genomic scaffold, Caty_1.0 Scaffold275, whole genome shotgun sequence #=GS NW_004438446.1/1315844-1315765 DE Orcinus orca isolate Morgan unplaced genomic scaffold, Oorc_1.1 Scaffold32, whole genome shotgun sequence #=GS NW_005871327.1/199610-199537 DE Myotis lucifugus unplaced genomic scaffold, Myoluc2.0 scaffold_279, whole genome shotgun sequence #=GS NW_006291020.1/2503137-2503210 DE Myotis davidii unplaced genomic scaffold, ASM32734v1 scaffold401, whole genome shotgun sequence #=GS NW_004087897.1/35211031-35211107 DE Nomascus leucogenys isolate Asia; international studbook 0098 chromosome 12 genomic scaffold, Nleu_3.0, whole genome shotgun sequence #=GS NC_019827.1/35212031-35212107 DE Nomascus leucogenys isolate Asia; international studbook 0098 chromosome 12, Nleu_3.0, whole genome shotgun sequence #=GS NW_012102110.1/1664335-1664259 DE Mandrillus leucophaeus isolate KB7577 unplaced genomic scaffold, Mleu.le_1.0 Scaffold207, whole genome shotgun sequence #=GS NW_019160964.1/1039948-1039869 DE Delphinapterus leucas isolate GAN/ISIS: 26980492/103006 unplaced genomic scaffold, ASM228892v2 scaffoldscaf110, whole genome shotgun sequence #=GS NW_006725799.1/1376528-1376449 DE Balaenoptera acutorostrata scammoni unplaced genomic scaffold, BalAcu1.0 scaffold150, whole genome shotgun sequence #=GS NW_003943631.1/1895282-1895206 DE Saimiri boliviensis boliviensis isolate 3227 unplaced genomic scaffold, SaiBol1.0 scaffold00028, whole genome shotgun sequence #=GS NW_016107399.1/3818981-3818905 DE Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold, Cebus_imitator-1.0 Scaffold84, whole genome shotgun sequence #=GS NW_006735275.1/60593220-60593296 DE Chlorocebus sabaeus isolate 1994-021 chromosome 25 genomic scaffold, Chlorocebus_sabeus 1.1 CAE25, whole genome shotgun sequence #=GS NW_007370735.1/3314954-3314881 DE Eptesicus fuscus isolate BU_THK_EF1 unplaced genomic scaffold, EptFus1.0 scaffold00085, whole genome shotgun sequence #=GS NW_011591336.1/4050669-4050590 DE Camelus dromedarius breed Arabia unplaced genomic scaffold, PRJNA234474_Ca_dromedarius_V1.0 scaffold287, whole genome shotgun sequence #=GS NW_006212689.1/857921-857842 DE Camelus ferus isolate Naran unplaced genomic scaffold, CB1 scaffold2523, whole genome shotgun sequence #=GS NW_011513397.1/4141137-4141058 DE Camelus bactrianus breed Alxa unplaced genomic scaffold, Ca_bactrianus_MBC_1.0 scaffold418, whole genome shotgun sequence NT_004487.20/24249351-24249275 CACUUCUCAUC...CCAGCU-GCAAAUGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCugUC-ACCCAGCCGGG #=GR NT_004487.20/24249351-24249275 PP ***********...***999.************************..***..*******************666.*********** NG_007384.1/89672-89748 CACUUCUCAUC...CCAGCU-GCAAAUGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCugUC-ACCCAGCCGGG #=GR NG_007384.1/89672-89748 PP ***********...***999.************************..***..*******************666.*********** NC_000001.11/167433938-167433862 CACUUCUCAUC...CCAGCU-GCAAAUGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCugUC-ACCCAGCCGGG #=GR NC_000001.11/167433938-167433862 PP ***********...***999.************************..***..*******************666.*********** NC_027868.1/146652032-146651956 CACUUCUCAUC...CCAGCU-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCugUC-ACCCAGCCGGG #=GR NC_027868.1/146652032-146651956 PP ***********...***999.************************..***..*******************666.*********** NW_014013792.1/5773354-5773278 CACUUCUCAUC...CCAGCU-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCugUC-ACCCAGCCGGG #=GR NW_014013792.1/5773354-5773278 PP ***********...***999.************************..***..*******************666.*********** NC_036879.1/142472353-142472277 CACUUCUCAUC...CCAGCU-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCugUC-ACCCAGCCGGG #=GR NC_036879.1/142472353-142472277 PP ***********...***999.************************..***..*******************666.*********** NC_018424.2/146421475-146421399 CACUUCUCAUC...CCAGCU-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCugUC-ACCCAGCCGGG #=GR NC_018424.2/146421475-146421399 PP ***********...***999.************************..***..*******************666.*********** NW_019932792.1/61058881-61058957 CACUUCUCAUC...CCAGCU-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCugUC-ACCCAGCCGGG #=GR NW_019932792.1/61058881-61058957 PP ***********...***999.************************..***..*******************666.*********** NW_017493678.1/22130877-22130801 CACUUCUCAUC...CCAGCU-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCugUC-ACCCAGCCGGG #=GR NW_017493678.1/22130877-22130801 PP ***********...***999.************************..***..*******************666.*********** NW_012113808.1/7691416-7691340 CACUUCUCAUC...CCAGCU-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCagUC-ACCCAGUCGGG #=GR NW_012113808.1/7691416-7691340 PP ***********...***999.************************..***..*******************666.*********** NW_019317079.1/4327655-4327579 CACUUCUCAUC...CCAGCU-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCagUC-ACCCAGUCGGG #=GR NW_019317079.1/4327655-4327579 PP ***********...***999.************************..***..*******************666.*********** NW_006785816.1/1297020-1296941 CCUUCCUCCUA...UCA-CCUGCAAAAGCCcAUGUGGUGGCUGCCagAGGCAAAGGUUAAUCCAGCUGUC.aUCCAUUU-GAUAGU #=GR NW_006785816.1/1297020-1296941 PP ***********...***.****************************************************.********.****** NC_036903.1/82952969-82953045 CACUUCUCAUC...CCA-GCUGCAAACGCCcAUGUGUUGGCCAUC..AGA--GGUGAAGGCGAACCUGACugUC-ACCCAGUCGGG #=GR NC_036903.1/82952969-82953045 PP ***********...***.9**************************..***..*******************666.*********** NW_019937203.1/19709154-19709078 CACUUCUCAUC...CCA-GCUGCAAACGCCcAUGUGUUGGCCAUC..AGA--GGUGAAGGCGAACCUGACugUC-ACCCAGUCGGG #=GR NW_019937203.1/19709154-19709078 PP ***********...***.9**************************..***..*******************666.*********** NW_019873626.1/1415407-1415328 CCUUCCUCCUA...UCA-CCUGCAAAAGCCcAUGUGGUGGCUGCCagAGGCAAAGGUUAAUCCAUCUGUC.aUCCAUUU-GAUAGU #=GR NW_019873626.1/1415407-1415328 PP ***********...***.****************************************************.********.****** NW_005370460.1/3423383-3423310 CAC--CUAUUCguaCCA-CCUGCAAAAGCC.AUGUGGUGGCCACA.gAG----GUGAAGGCAACCCAGCU..UCUACCC-AUCGGG #=GR NW_005370460.1/3423383-3423310 PP ***..566666666***.************.**************.775....*****************..*******.****** NW_014804585.1/2858556-2858632 CACUUCUCAUC...CCAGCG-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCagUC-ACCCAGUCGGG #=GR NW_014804585.1/2858556-2858632 PP ***********...***665.***************9********..***..*******************666.*********** NW_005092959.1/25399408-25399332 CACUUCUCAUC...CCAGCG-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCagUC-ACCCAGUCGGG #=GR NW_005092959.1/25399408-25399332 PP ***********...***665.***************9********..***..*******************666.*********** NW_018753644.1/1089176-1089252 CACUUCUCAUC...CCAGCG-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCagUC-ACCCAGUCGGG #=GR NW_018753644.1/1089176-1089252 PP ***********...***665.***************9********..***..*******************666.*********** NC_027893.1/200245346-200245422 CACUUCUCAUC...CCAGCG-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCagUC-ACCCAGUCGGG #=GR NC_027893.1/200245346-200245422 PP ***********...***665.***************9********..***..*******************666.*********** NW_020251504.1/198078050-198078126 CACUUCUCAUC...CCAGCG-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCagUC-ACCCAGUCGGG #=GR NW_020251504.1/198078050-198078126 PP ***********...***665.***************9********..***..*******************666.*********** NC_018152.2/193198324-193198400 CACUUCUCAUC...CCAGCG-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCagUC-ACCCAGUCGGG #=GR NC_018152.2/193198324-193198400 PP ***********...***665.***************9********..***..*******************666.*********** NC_022272.1/25399408-25399332 CACUUCUCAUC...CCAGCG-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCagUC-ACCCAGUCGGG #=GR NC_022272.1/25399408-25399332 PP ***********...***665.***************9********..***..*******************666.*********** NW_012011511.1/4474036-4473960 CACUUCUCAUC...CCAGCG-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCagUC-ACCCAGUCGGG #=GR NW_012011511.1/4474036-4473960 PP ***********...***665.***************9********..***..*******************666.*********** NC_037668.1/198078050-198078126 CACUUCUCAUC...CCAGCG-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCagUC-ACCCAGUCGGG #=GR NC_037668.1/198078050-198078126 PP ***********...***665.***************9********..***..*******************666.*********** NW_020173022.1/398230-398151 CCUUCCUCCUA...UCA-CCUGCAAAAGCCcACGUGGUGGCCGCCagAGGCAAAGGUUAGUCCAGCUGUC.aUCCAUUU-GAUAGU #=GR NW_020173022.1/398230-398151 PP ***********...***.****************************************************.********.****** NW_012002568.1/3377501-3377577 CACUUCUCAUC...CCA-GCAGCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCagUC-ACCCAGUUGGG #=GR NW_012002568.1/3377501-3377577 PP ***********...***.567**************99********..***..*******************666.*********** NW_004438446.1/1315844-1315765 CCUUCCUCCUA...UCA-CCUGCAAAAGCCcACGUGGUGGCUGCCagAGGCAAAGGUUAGUCCAGCUAUC.aUCCAUUU-GAUAGU #=GR NW_004438446.1/1315844-1315765 PP ***********...***.****************************************************.********.****** NW_005871327.1/199610-199537 CAC--CUAUUCguaCCA-CCUGCAAAAGCC.AUGUGGUGGCCGCA.gAG----GUGAAGGCAACCCAGCU..CCUACCC-AUCGGG #=GR NW_005871327.1/199610-199537 PP ***..566666666***.************.**************.775....*****************..*******.****** NW_006291020.1/2503137-2503210 CAC--CUAUUCguaCCA-CCUGCAAAAGCC.AUGUGGUGGCUGCA.gAG----GUGAAGGCAACCCAGCU..CCUACCC-AUCGGG #=GR NW_006291020.1/2503137-2503210 PP ***..566666666***.************.**************.775....*****************..*******.****** NW_004087897.1/35211031-35211107 CACUCCUCAUC...CCA-GCUGCAAACGCCcAUGUGCUGGCCAUC..AGA--GGUGAAGGUGAACCUGGCugUC-ACCCAGUUGGG #=GR NW_004087897.1/35211031-35211107 PP ***********...***.***************************..***..******************9666.*********** NC_019827.1/35212031-35212107 CACUCCUCAUC...CCA-GCUGCAAACGCCcAUGUGCUGGCCAUC..AGA--GGUGAAGGUGAACCUGGCugUC-ACCCAGUUGGG #=GR NC_019827.1/35212031-35212107 PP ***********...***.***************************..***..******************9666.*********** NW_012102110.1/1664335-1664259 CACUUCUCAUC...CCAGCG-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGUGAACCUGGCagUC-ACCCAGUUGGG #=GR NW_012102110.1/1664335-1664259 PP ***********...***665.***************9********..***..*******************666.*********** NW_019160964.1/1039948-1039869 CCUUCCUCCUA...UCA-CCUGCAAAAGCCcACGUGGUGGCUGCCagGGGCAAAGGUUAGUCCAGCUGUC.aUCCAUUU-GAUAGU #=GR NW_019160964.1/1039948-1039869 PP ***********...***.***************************888899*******************.********.****** NW_006725799.1/1376528-1376449 CCUUCCUCCCA...UCA-CCUGCAAAAGCCcACGUGGUGGCUGCCagAGGCAAAGGUUAAUCCAGCUGUC.aUCCAUUU-GAUAGU #=GR NW_006725799.1/1376528-1376449 PP ***********...***.****************************************************.********.****** NW_003943631.1/1895282-1895206 CACUUCUCAUC...CCAGCU-GCAAAUGCCcAAGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCugUC-ACCCAGUCAGA #=GR NW_003943631.1/1895282-1895206 PP ***********...***999.************************..***..******************9666.*********** NW_016107399.1/3818981-3818905 CACUUCUCAUC...CCAGCU-GCAAAUGCCcAAGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCugUC-ACCCAGUCAGA #=GR NW_016107399.1/3818981-3818905 PP ***********...***999.************************..***..******************9666.*********** NW_006735275.1/60593220-60593296 CACUUCUCAUC...CCAGCG-GCAAACGCCcAUGUGGUGGCCAUC..AGA--GGUGAAGGCGAACCUGGCagUC-ACCCAGUAGGG #=GR NW_006735275.1/60593220-60593296 PP ***********...***665.***************9********..***..*******************666.*********** NW_007370735.1/3314954-3314881 CACC--UAUUCauaCCA-CCUGCAAAAGCC.ACGUGGUGGCCGCA.gA----GGUGAAGGUAACCCAGCU..CCUACCC-AUCGGG #=GR NW_007370735.1/3314954-3314881 PP ***6..44444445***.************.*************9.66....6*****************..*******.****** NW_011591336.1/4050669-4050590 CCUUCCUCUGA...UCA-CCUGCAAAAGCCcAUGUGGUGGCUGGCagAGGCAGAGGUUAGUCCAGCUCUC.aCCCACUG-GAUAGU #=GR NW_011591336.1/4050669-4050590 PP ***********...***.*************************999************************.99999999.****** NW_006212689.1/857921-857842 CCUUCCUCUGA...UCA-CCUGCAAAAGCCcAUGUGGUGGCUGGCagAGGCAGAGGUUAGUCCAGCUCUC.gCCCACUG-GAUAGU #=GR NW_006212689.1/857921-857842 PP ***********...***.*************************999************************.99999999.****** NW_011513397.1/4141137-4141058 CCUUCCUCUGA...UCA-CCUGCAAAAGCCcAUGUGGUGGCUGGCagAGGCAGAGGUUAGUCCAGCUCUC.gCCCACUG-GAUAGU #=GR NW_011513397.1/4141137-4141058 PP ***********...***.*************************999************************.99999999.****** #=GC SS_cons <<<<<<<----...<<<-<<-<<<______._>>>>>>>>-----..>>>-->>>>--------<<<<<<..________>>>>>> #=GC RF ccccccuCuUc...CcAuCCugcAAAuGCC.AUguGGUgGCcAcc..aggagggggAagGCaAAcCuGgC..UCCAuCcAGcCaGg //