Supplementary Fig. S2. ORF8ab with the deletion, alignment and deliniated mutations. A consensus sequence (reconstructed using the "majority" rule) and "mutated" sequence (all mutations merged together) are shown below the alignment. Query: ORF8ab with the deletion; AY394995 Query 1 ATGAAACTTCTCATTGTTTTGACTTGTATTTCTCTATGCAGTTGCATACGCACTGTTGTA 60 AH013657.2 11471 ........................................................A... 11530 DQ640652.1 27785 ........................................................A... 27844 AY864806.1 27779 ........................................................A... 27838 AY864805.1 27779 ........................................................A... 27838 AY395004.1 27732 ........................................................A... 27791 AY394993.1 27764 ........................................................A... 27823 AY394992.1 27764 ........................................................A... 27823 AY394990.1 27764 ........................................................A... 27823 AY394989.1 27764 ........................................................A... 27823 AY394987.1 27737 ........................................................A... 27796 AY394983.1 27727 ........................................................A... 27786 AY394977.1 27728 ........................................................A... 27787 AY304495.1 27764 ........................................................A... 27823 AY304492.1 11515 ........................................................A... 11574 AY278554.2 27764 ........................................................A... 27823 AY279354.2 27763 ........................................................A... 27822 AY278490.3 27775 ........................................................A... 27834 AY278487.3 27779 ........................................................A... 27838 AY278488.2 27760 ........................................................A... 27819 AY654624.1 27778 ........................................................A... 27837 AY304490.1 11515 ........................................................A... 11574 MT308984.1 27782 ................................................T.......A... 27841 MK062180.1 27779 ................................................T.......A... 27838 MK062179.1 27779 ................................................T.......A... 27838 AH012999.2 17639 ................................................T.......A... 17698 JX163928.1 27739 ................................................T.......A... 27798 JX163926.1 27739 ................................................T.......A... 27798 JX163924.1 27739 ................................................T.......A... 27798 JX162087.1 27759 ................................................T.......A... 27818 JN854286.1 27779 ................................................T.......A... 27838 JQ316196.1 27779 ................................................T.......A... 27838 JF292915.1 27739 ................................................T.......A... 27798 JF292909.1 27739 ................................................T.......A... 27798 JF292906.1 27739 ................................................T.......A... 27798 JF292905.1 27739 ................................................T.......A... 27798 JF292903.1 27739 ................................................T.......A... 27798 HQ890541.1 27739 ................................................T.......A... 27798 HQ890538.1 27739 ................................................T.......A... 27798 HQ890535.1 27739 ................................................T.......A... 27798 HQ890532.1 27739 ................................................T.......A... 27798 HQ890531.1 27739 ................................................T.......A... 27798 HQ890529.1 27739 ................................................T.......A... 27798 HQ890526.1 27739 ................................................T.......A... 27798 FJ882961.1 27772 ................................................T.......A... 27831 FJ882958.1 27772 ................................................T.......A... 27831 FJ882957.1 27772 ................................................T.......A... 27831 FJ882956.1 27739 ................................................T.......A... 27798 FJ882955.1 27739 ................................................T.......A... 27798 FJ882954.1 27729 ................................................T.......A... 27788 FJ882953.1 27741 ................................................T.......A... 27800 FJ882952.1 27772 ................................................T.......A... 27831 FJ882950.1 27739 ................................................T.......A... 27798 FJ882949.1 27740 ................................................T.......A... 27799 FJ882948.1 27772 ................................................T.......A... 27831 FJ882945.1 27772 ................................................T.......A... 27831 FJ882944.1 27721 ................................................T.......A... 27780 FJ882943.1 27772 ................................................T.......A... 27831 FJ882941.1 27758 ................................................T.......A... 27817 FJ882940.1 27739 ................................................T.......A... 27798 FJ882939.1 27739 ................................................T.......A... 27798 FJ882938.1 27759 ................................................T.......A... 27818 FJ882937.1 27741 ................................................T.......A... 27800 FJ882936.1 27739 ................................................T.......A... 27798 FJ882935.1 27740 ................................................T.......A... 27799 FJ882934.1 27739 ................................................T.......A... 27798 FJ882933.1 27741 ................................................T.......A... 27800 FJ882932.1 27739 ................................................T.......A... 27798 FJ882931.1 27739 ................................................T.......A... 27798 FJ882930.1 27759 ................................................T.......A... 27818 FJ882929.1 27758 ................................................T.......A... 27817 FJ882928.1 27759 ................................................T.......A... 27818 FJ882927.1 27759 ................................................T.......A... 27818 FJ882926.1 27747 ................................................T.......A... 27806 EU371559.1 27779 ................................................T.......A... 27838 DQ898174.1 27779 ................................................T.......A... 27838 DQ497008.1 27779 ................................................T.......A... 27838 AY278741.1 27779 ................................................T.......A... 27838 AY714217.1 27779 ................................................T.......A... 27838 AY559097.1 27762 ................................................T.......A... 27821 AY559091.1 27763 ................................................T.......A... 27822 AY559090.1 27775 ................................................T.......A... 27834 AY559089.1 27767 ................................................T.......A... 27826 AY559088.1 27765 ................................................T.......A... 27824 AY559081.1 27767 ................................................T.......A... 27826 AY595412.1 27763 ........................................................A... 27822 DQ182595.1 27763 ................................................T.......A... 27822 NC_004718.3 27779 ................................................T.......A... 27838 AY323977.2 27779 ................................................T.......A... 27838 AY291315.1 27779 ................................................T.......A... 27838 AY291451.1 27779 ................................................T.......A... 27838 AY502931.1 27779 ................................................T.......A... 27838 AY502930.1 27779 ................................................T.......A... 27838 AY502929.1 27779 ................................................T.......A... 27838 AY502928.1 27779 ................................................T.......A... 27838 AY502927.1 27779 ................................................T.......A... 27838 AY502926.1 27779 ................................................T.......A... 27838 AY290752.2 867 ................................................T.......A... 926 AY394998.1 27764 ................................................T.......A... 27823 AY394991.1 27764 ...............................T........................A... 27823 AY394980.1 27733 ................................................T.......A... 27792 AY463060.1 27121 ................................................T.......A... 27180 AY463059.1 27700 ................................................T.......A... 27759 AY310120.1 27779 ................................................T.......A... 27838 AY345986.1 27764 ................................................T.......A... 27823 AY357076.1 27762 ................................................T.......A... 27821 AY350750.1 27766 ................................................T.......A... 27825 AY282752.2 27764 ................................................T.......A... 27823 AY461660.1 27764 ................................................T.......A... 27823 AY427439.1 27763 ................................................T.......A... 27822 AY283798.2 27763 ................................................T.......A... 27822 AY278491.2 27779 ................................................T.......A... 27838 AY362699.1 27779 ................................................T.......A... 27838 AY283794.1 27763 ................................................T.......A... 27822 AY283796.1 27763 ................................................T.......A... 27822 AY351680.1 27801 ................................................T.......A... 27860 AY297028.1 27771 ................................................T.......A... 27830 AP006557.1 27779 ................................................T.......A... 27838 AY338174.1 27710 ................................................T.......A... 27769 AY772062.1 27512 ................................................T.......A... 27571 AY485277.1 27776 ................................................T.......A... 27835 AY313906.1 27790 ................................................T.......A... 27849 JX163927.1 27739 .................................Y..............T.......A... 27798 JX163925.1 27739 .................................Y..............T.......A... 27798 JF292922.1 27739 ................................................T.......A.Y. 27798 KF514407.1 27759 ................................................T.......A... 27818 FJ882960.1 27739 ................................................T.......A... 27798 FJ882963.1 27760 .................................T..............T.......A... 27819 AY559096.1 27771 ................................................T.......A... 27830 AY559095.1 27769 ................................................T.......A... 27828 AY559093.1 27763 ................................................T.......A... 27822 AY559087.1 27763 ................................................T.......A... 27822 AY559085.1 27763 ................................................T.......A... 27822 AY559084.1 27763 ................................................T.......A... 27822 AY502932.1 27779 .................................T..............T.......A... 27838 AY502924.1 27777 .................................T..............T.......A... 27836 AY502923.1 27779 .................................T..............T.......A... 27838 AY345988.1 27764 ................................................T.......A... 27823 AY304493.1 9054 ................................................T.......A... 9113 AP006561.1 27779 .................................T..............T.......A... 27838 AP006560.1 27779 .................................T..............T.......A... 27838 AP006559.1 27779 .................................T..............T.......A... 27838 AP006558.1 27777 .................................T..............T.......A... 27836 AY348314.1 27710 .................................T..............T.......A... 27769 AY338175.1 27710 .................................T..............T.......A... 27769 JX163923.1 27739 ................................................T.......A... 27798 AY304494.1 9054 .............................NN.................T.......A... 9113 AY304491.1 9051 ........................................................A... 9110 EU371560.1 27779 ................................................T.......A... 27838 AY559092.1 27765 ................................................T.......A... 27824 MK062182.1 27779 ................................................T.......A... 27838 MK062181.1 27779 ................................................T.......A... 27838 AY283795.1 27766 .......................................T.......A... 27816 FJ882962.1 27772 ................................................T.......A... 27831 FJ882959.1 27772 ................................................T.......A... 27831 FJ882951.1 27772 ................................................T.......A... 27831 FJ882942.1 27772 ................................................T.......A... 27831 GU553365.1 27739 ............................--..................T.......A... 27796 GU553363.1 27739 ............................--..................T.......A... 27796 AY357075.1 27765 ................................................T.......A... 27824 AY321118.1 27779 ............................--..................T.......A... 27836 AY394850.2 27779 ............................--..................T.......A... 27836 AY485278.1 27779 ................................................T.......A... 27838 AY283797.1 27763 ...............................-----............T.......A... 27817 MK062184.1 27889 ................................................T.......A... 27948 MK062183.1 27889 ................................................T.......A... 27948 Consensus ATGAAACTTCTCATTGTTTTGACTTGTATTTCTCTATGCAGTTGCATATGCACTGTAGTA Mutated T T T T C T DownloadNextPreviousFirst Range Query range 2: 61 to 120 Query 61 CAGCGCTGTGCATCTAATAAACCTCATGTGCTTGAAGATCCTTGTAAGGTACAACACTAG 120 AH013657.2 11531 ............................................................ 11590 DQ640652.1 27845 ............................................................ 27904 AY864806.1 27839 ............................................................ 27898 AY864805.1 27839 ............................................................ 27898 AY395004.1 27792 ............................................................ 27851 AY394993.1 27824 ............................................................ 27883 AY394992.1 27824 ............................................................ 27883 AY394990.1 27824 ............................................................ 27883 AY394989.1 27824 ............................................................ 27883 AY394987.1 27797 ............................................................ 27856 AY394983.1 27787 ............................................................ 27846 AY394977.1 27788 ............................................................ 27847 AY304495.1 27824 ............................................................ 27883 AY304492.1 11575 ............................................................ 11634 AY278554.2 27824 ............................................................ 27883 AY279354.2 27823 ............................................................ 27882 AY278490.3 27835 ............................................................ 27894 AY278487.3 27839 ............................................................ 27898 AY278488.2 27820 ............................................................ 27879 AY654624.1 27838 ............................................................ 27897 AY304490.1 11575 ...........................................N................ 11634 MT308984.1 27842 ............................................................ 27901 MK062180.1 27839 ............................................................ 27898 MK062179.1 27839 ............................................................ 27898 AH012999.2 17699 ............................................................ 17758 JX163928.1 27799 ............................................................ 27858 JX163926.1 27799 ............................................................ 27858 JX163924.1 27799 ............................................................ 27858 JX162087.1 27819 ............................................................ 27878 JN854286.1 27839 ............................................................ 27898 JQ316196.1 27839 ............................................................ 27898 JF292915.1 27799 ............................................................ 27858 JF292909.1 27799 ............................................................ 27858 JF292906.1 27799 ............................................................ 27858 JF292905.1 27799 ............................................................ 27858 JF292903.1 27799 ............................................................ 27858 HQ890541.1 27799 ............................................................ 27858 HQ890538.1 27799 ............................................................ 27858 HQ890535.1 27799 ............................................................ 27858 HQ890532.1 27799 ............................................................ 27858 HQ890531.1 27799 ............................................................ 27858 HQ890529.1 27799 ............................................................ 27858 HQ890526.1 27799 ............................................................ 27858 FJ882961.1 27832 ............................................................ 27891 FJ882958.1 27832 ............................................................ 27891 FJ882957.1 27832 ............................................................ 27891 FJ882956.1 27799 ............................................................ 27858 FJ882955.1 27799 ............................................................ 27858 FJ882954.1 27789 ............................................................ 27848 FJ882953.1 27801 ............................................................ 27860 FJ882952.1 27832 ............................................................ 27891 FJ882950.1 27799 ............................................................ 27858 FJ882949.1 27800 ............................................................ 27859 FJ882948.1 27832 ............................................................ 27891 FJ882945.1 27832 ............................................................ 27891 FJ882944.1 27781 ............................................................ 27840 FJ882943.1 27832 ............................................................ 27891 FJ882941.1 27818 ............................................................ 27877 FJ882940.1 27799 ............................................................ 27858 FJ882939.1 27799 ............................................................ 27858 FJ882938.1 27819 ............................................................ 27878 FJ882937.1 27801 ............................................................ 27860 FJ882936.1 27799 ............................................................ 27858 FJ882935.1 27800 ............................................................ 27859 FJ882934.1 27799 ............................................................ 27858 FJ882933.1 27801 ............................................................ 27860 FJ882932.1 27799 ............................................................ 27858 FJ882931.1 27799 ............................................................ 27858 FJ882930.1 27819 ............................................................ 27878 FJ882929.1 27818 ............................................................ 27877 FJ882928.1 27819 ............................................................ 27878 FJ882927.1 27819 ............................................................ 27878 FJ882926.1 27807 ............................................................ 27866 EU371559.1 27839 ............................................................ 27898 DQ898174.1 27839 ............................................................ 27898 DQ497008.1 27839 ............................................................ 27898 AY278741.1 27839 ............................................................ 27898 AY714217.1 27839 ............................................................ 27898 AY559097.1 27822 ............................................................ 27881 AY559091.1 27823 ............................................................ 27882 AY559090.1 27835 ............................................................ 27894 AY559089.1 27827 ............................................................ 27886 AY559088.1 27825 ............................................................ 27884 AY559081.1 27827 ............................................................ 27886 AY595412.1 27823 ............................................................ 27882 DQ182595.1 27823 ............................................................ 27882 NC_004718.3 27839 ............................................................ 27898 AY323977.2 27839 ............................................................ 27898 AY291315.1 27839 ............................................................ 27898 AY291451.1 27839 ............................................................ 27898 AY502931.1 27839 ............................................................ 27898 AY502930.1 27839 ............................................................ 27898 AY502929.1 27839 ............................................................ 27898 AY502928.1 27839 ............................................................ 27898 AY502927.1 27839 ............................................................ 27898 AY502926.1 27839 ............................................................ 27898 AY290752.2 927 ............................................................ 986 AY394998.1 27824 ............................................................ 27883 AY394991.1 27824 ............................................................ 27883 AY394980.1 27793 ............................................................ 27852 AY463060.1 27181 ............................................................ 27240 AY463059.1 27760 ............................................................ 27819 AY310120.1 27839 ............................................................ 27898 AY345986.1 27824 ............................................................ 27883 AY357076.1 27822 ............................................................ 27881 AY350750.1 27826 ............................................................ 27885 AY282752.2 27824 ............................................................ 27883 AY461660.1 27824 ............................................................ 27883 AY427439.1 27823 ............................................................ 27882 AY283798.2 27823 ............................................................ 27882 AY278491.2 27839 ............................................................ 27898 AY362699.1 27839 ............................................................ 27898 AY283794.1 27823 ............................................................ 27882 AY283796.1 27823 ............................................................ 27882 AY351680.1 27861 ............................................................ 27920 AY297028.1 27831 ............................................................ 27890 AP006557.1 27839 ............................................................ 27898 AY338174.1 27770 ............................................................ 27829 AY772062.1 27572 ............................................................ 27631 AY485277.1 27836 ............................................................ 27895 AY313906.1 27850 ............................................................ 27909 JX163927.1 27799 ............................................................ 27858 JX163925.1 27799 ............................................................ 27858 JF292922.1 27799 ............................................................ 27858 KF514407.1 27819 ............................................................ 27878 FJ882960.1 27799 ............................................................ 27858 FJ882963.1 27820 ............................................................ 27879 AY559096.1 27831 ............................................................ 27890 AY559095.1 27829 ............................................................ 27888 AY559093.1 27823 ............................................................ 27882 AY559087.1 27823 ............................................................ 27882 AY559085.1 27823 ............................................................ 27882 AY559084.1 27823 ............................................................ 27882 AY502932.1 27839 ............................................................ 27898 AY502924.1 27837 ............................................................ 27896 AY502923.1 27839 ............................................................ 27898 AY345988.1 27824 ............................................................ 27883 AY304493.1 9114 ............................................................ 9173 AP006561.1 27839 ............................................................ 27898 AP006560.1 27839 ............................................................ 27898 AP006559.1 27839 ............................................................ 27898 AP006558.1 27837 ............................................................ 27896 AY348314.1 27770 ............................................................ 27829 AY338175.1 27770 ............................................................ 27829 JX163923.1 27799 ....................R....................................... 27858 AY304494.1 9114 ............................................................ 9173 AY304491.1 9111 ...........................................-................ 9169 EU371560.1 27839 ............................................................ 27898 AY559092.1 27825 ............................................................ 27884 MK062182.1 27839 ............................................................ 27898 MK062181.1 27839 ............................................................ 27898 AY283795.1 27817 ............................................................ 27876 FJ882962.1 27832 ............................................................ 27891 FJ882959.1 27832 ............................................................ 27891 FJ882951.1 27832 ............................................................ 27891 FJ882942.1 27832 ............................................................ 27891 GU553365.1 27797 ............................................................ 27856 GU553363.1 27797 ............................................................ 27856 AY357075.1 27825 ............................................--.............. 27882 AY321118.1 27837 ............................................................ 27896 AY394850.2 27837 ............................................................ 27896 AY485278.1 27839 ............................................--.............. 27896 AY283797.1 27818 ............................................................ 27877 MK062184.1 27949 ............................................................ 28008 MK062183.1 27949 ............................................................ 28008 Consensus CAGCGCTGTGCATCTAATAAACCTCATGTGCTTGAAGATCCTTGTAAGGTACAACACTAG Mutated DownloadNextPreviousFirst Range Query range 3: 121 to 180 Query 121 AGGTAATACTTACAGCACTGCTTGGCTTTGTGCTCTAGGAAAGGTTTTACCTTTTCATAG 180 AH013657.2 11591 G...........T............................................... 11650 DQ640652.1 27905 G...........T............................................... 27964 AY864806.1 27899 G...........T............................................... 27958 AY864805.1 27899 G...........T............................................... 27958 AY395004.1 27852 G...........T............................................... 27911 AY394993.1 27884 G...........T............................................... 27943 AY394992.1 27884 G...........T............................................... 27943 AY394990.1 27884 G...........T............................................... 27943 AY394989.1 27884 G...........T............................................... 27943 AY394987.1 27857 G...........T............................................... 27916 AY394983.1 27847 G...........T............................................... 27906 AY394977.1 27848 G...........T............................................... 27907 AY304495.1 27884 G...........T............................................... 27943 AY304492.1 11635 G...........T............................................... 11694 AY278554.2 27884 G...........T............................................... 27943 AY279354.2 27883 G...........T............................................... 27942 AY278490.3 27895 G...........T............................................... 27954 AY278487.3 27899 G...........T............................................... 27958 AY278488.2 27880 G...........T............................................... 27939 AY654624.1 27898 G...........T............................................... 27957 AY304490.1 11635 G...........T............................................... 11694 MT308984.1 27902 G...........T............................................... 27961 MK062180.1 27899 G...........T............................................... 27958 MK062179.1 27899 G...........T............................................... 27958 AH012999.2 17759 G...........T............................................... 17818 JX163928.1 27859 G...........T............................................... 27918 JX163926.1 27859 G...........T............................................... 27918 JX163924.1 27859 G...........T............................................... 27918 JX162087.1 27879 G...........T............................................... 27938 JN854286.1 27899 G...........T............................................... 27958 JQ316196.1 27899 G...........T............................................... 27958 JF292915.1 27859 G...........T............................................... 27918 JF292909.1 27859 G...........T............................................... 27918 JF292906.1 27859 G...........T............................................... 27918 JF292905.1 27859 G...........T............................................... 27918 JF292903.1 27859 G...........T............................................... 27918 HQ890541.1 27859 G...........T............................................... 27918 HQ890538.1 27859 G...........T............................................... 27918 HQ890535.1 27859 G...........T............................................... 27918 HQ890532.1 27859 G...........T............................................... 27918 HQ890531.1 27859 G...........T............................................... 27918 HQ890529.1 27859 G...........T............................................... 27918 HQ890526.1 27859 G...........T............................................... 27918 FJ882961.1 27892 G...........T............................................... 27951 FJ882958.1 27892 G...........T............................................... 27951 FJ882957.1 27892 G...........T............................................... 27951 FJ882956.1 27859 G...........T............................................... 27918 FJ882955.1 27859 G...........T............................................... 27918 FJ882954.1 27849 G...........T............................................... 27908 FJ882953.1 27861 G...........T............................................... 27920 FJ882952.1 27892 G...........T............................................... 27951 FJ882950.1 27859 G...........T............................................... 27918 FJ882949.1 27860 G...........T............................................... 27919 FJ882948.1 27892 G...........T............................................... 27951 FJ882945.1 27892 G...........T............................................... 27951 FJ882944.1 27841 G...........T............................................... 27900 FJ882943.1 27892 G...........T............................................... 27951 FJ882941.1 27878 G...........T............................................... 27937 FJ882940.1 27859 G...........T............................................... 27918 FJ882939.1 27859 G...........T............................................... 27918 FJ882938.1 27879 G...........T............................................... 27938 FJ882937.1 27861 G...........T............................................... 27920 FJ882936.1 27859 G...........T............................................... 27918 FJ882935.1 27860 G...........T............................................... 27919 FJ882934.1 27859 G...........T............................................... 27918 FJ882933.1 27861 G...........T............................................... 27920 FJ882932.1 27859 G...........T............................................... 27918 FJ882931.1 27859 G...........T............................................... 27918 FJ882930.1 27879 G...........T............................................... 27938 FJ882929.1 27878 G...........T............................................... 27937 FJ882928.1 27879 G...........T............................................... 27938 FJ882927.1 27879 G...........T............................................... 27938 FJ882926.1 27867 G...........T............................................... 27926 EU371559.1 27899 G...........T............................................... 27958 DQ898174.1 27899 G...........T............................................... 27958 DQ497008.1 27899 G...........T............................................... 27958 AY278741.1 27899 G...........T............................................... 27958 AY714217.1 27899 G...........T............................................... 27958 AY559097.1 27882 G...........T............................................... 27941 AY559091.1 27883 G...........T............................................... 27942 AY559090.1 27895 G...........T............................................... 27954 AY559089.1 27887 G...........T............................................... 27946 AY559088.1 27885 G...........T............................................... 27944 AY559081.1 27887 G...........T............................................... 27946 AY595412.1 27883 G...........T............................................... 27942 DQ182595.1 27883 G...........T............................................... 27942 NC_004718.3 27899 G...........T............................................... 27958 AY323977.2 27899 G...........T............................................... 27958 AY291315.1 27899 G...........T............................................... 27958 AY291451.1 27899 G...........T............................................... 27958 AY502931.1 27899 G...........T............................................... 27958 AY502930.1 27899 G...........T............................................... 27958 AY502929.1 27899 G...........T............................................... 27958 AY502928.1 27899 G...........T............................................... 27958 AY502927.1 27899 G...........T............................................... 27958 AY502926.1 27899 G...........T............................................... 27958 AY290752.2 987 G...........T............................................... 1046 AY394998.1 27884 G...........T............................................... 27943 AY394991.1 27884 G...........T............................................... 27943 AY394980.1 27853 G...........T............................................... 27912 AY463060.1 27241 G...........T............................................... 27300 AY463059.1 27820 G...........T............................................... 27879 AY310120.1 27899 G...........T............................................... 27958 AY345986.1 27884 G...........T............................................... 27943 AY357076.1 27882 G...........T............................................... 27941 AY350750.1 27886 G...........T............................................... 27945 AY282752.2 27884 G...........T............................................... 27943 AY461660.1 27884 G...........T............................................... 27943 AY427439.1 27883 G...........T............................................... 27942 AY283798.2 27883 G...........T............................................... 27942 AY278491.2 27899 G...........T............................................... 27958 AY362699.1 27899 G...........T............................................... 27958 AY283794.1 27883 G...........T............................................... 27942 AY283796.1 27883 G...........T............................................... 27942 AY351680.1 27921 G...........T............................................... 27980 AY297028.1 27891 G...........T............................................... 27950 AP006557.1 27899 G...........T............................................... 27958 AY338174.1 27830 G...........T............................................... 27889 AY772062.1 27632 G...........T............................................... 27691 AY485277.1 27896 G...........T............................................... 27955 AY313906.1 27910 G...........T............................................... 27969 JX163927.1 27859 G...........T............................................... 27918 JX163925.1 27859 G...........T............................................... 27918 JF292922.1 27859 G...........T............................................... 27918 KF514407.1 27879 G...........T....................C.......................... 27938 FJ882960.1 27859 G...........T.....A......................................... 27918 FJ882963.1 27880 G...........T............................................... 27939 AY559096.1 27891 G...........T............................................... 27950 AY559095.1 27889 G...........T............................................... 27948 AY559093.1 27883 G...........T............................................... 27942 AY559087.1 27883 G...........T............................................... 27942 AY559085.1 27883 G...........T............................................... 27942 AY559084.1 27883 G...........T............................................... 27942 AY502932.1 27899 G...........T............................................... 27958 AY502924.1 27897 G...........T............................................... 27956 AY502923.1 27899 G...........T............................................... 27958 AY345988.1 27884 G...........T............................................... 27943 AY304493.1 9174 G...........T............................................... 9233 AP006561.1 27899 G...........T............................................... 27958 AP006560.1 27899 G...........T............................................... 27958 AP006559.1 27899 G...........T............................................... 27958 AP006558.1 27897 G...........T............................................... 27956 AY348314.1 27830 G...........T............................................... 27889 AY338175.1 27830 G...........T............................................... 27889 JX163923.1 27859 G...........T.....................Y......................... 27918 AY304494.1 9174 G...........T............................................... 9233 AY304491.1 9170 G...........T............................................... 9229 EU371560.1 27899 G...........T............................................... 27958 AY559092.1 27885 G...........T............................................... 27944 MK062182.1 27899 G...........T............................................... 27958 MK062181.1 27899 G...........T............................................... 27958 AY283795.1 27877 G...........T............................................... 27936 FJ882962.1 27892 G...........T............................................... 27951 FJ882959.1 27892 G...........T............................................... 27951 FJ882951.1 27892 G...........T............................................... 27951 FJ882942.1 27892 G...........T............................................... 27951 GU553365.1 27857 G...........T............................................... 27916 GU553363.1 27857 G...........T............................................... 27916 AY357075.1 27883 G...........T............................................... 27942 AY321118.1 27897 G...........T............................................... 27956 AY394850.2 27897 G...........T............................................... 27956 AY485278.1 27897 G...........T............................................... 27956 AY283797.1 27878 G...........T............................................... 27937 MK062184.1 28009 G...........T............................................... 28068 MK062183.1 28009 G...........T............................................... 28068 Consensus GGGTAATACTTATAGCACTGCTTGGCTTTGTGCTCTAGGAAAGGTTTTACCTTTTCATAG Mutated A C A C DownloadNextPreviousFirst Range Query range 4: 181 to 240 Query 181 ATGGCACACTATGGTTCAAACATGCACACCTAATGTTACTATCAACTGTCAAGATCCAGC 240 AH013657.2 11651 ............................................................ 11710 DQ640652.1 27965 ............................................................ 28024 AY864806.1 27959 ............................................................ 28018 AY864805.1 27959 ............................................................ 28018 AY395004.1 27912 ............................................................ 27971 AY394993.1 27944 ............................................................ 28003 AY394992.1 27944 ............................................................ 28003 AY394990.1 27944 ............................................................ 28003 AY394989.1 27944 ............................................................ 28003 AY394987.1 27917 ............................................................ 27976 AY394983.1 27907 ............................................................ 27966 AY394977.1 27908 ............................................................ 27967 AY304495.1 27944 ............................................................ 28003 AY304492.1 11695 ............................................................ 11754 AY278554.2 27944 ............................................................ 28003 AY279354.2 27943 ............................................................ 28002 AY278490.3 27955 ............................................................ 28014 AY278487.3 27959 ............................................................ 28018 AY278488.2 27940 ............................................................ 27999 AY654624.1 27958 ............................................................ 28017 AY304490.1 11695 ............................................................ 11754 MT308984.1 27962 ............................................................ 28021 MK062180.1 27959 ............................................................ 28018 MK062179.1 27959 ............................................................ 28018 AH012999.2 17819 ............................................................ 17878 JX163928.1 27919 ............................................................ 27978 JX163926.1 27919 ............................................................ 27978 JX163924.1 27919 ............................................................ 27978 JX162087.1 27939 ............................................................ 27998 JN854286.1 27959 ............................................................ 28018 JQ316196.1 27959 ............................................................ 28018 JF292915.1 27919 ............................................................ 27978 JF292909.1 27919 ............................................................ 27978 JF292906.1 27919 ............................................................ 27978 JF292905.1 27919 ............................................................ 27978 JF292903.1 27919 ............................................................ 27978 HQ890541.1 27919 ............................................................ 27978 HQ890538.1 27919 ............................................................ 27978 HQ890535.1 27919 ............................................................ 27978 HQ890532.1 27919 ............................................................ 27978 HQ890531.1 27919 ............................................................ 27978 HQ890529.1 27919 ............................................................ 27978 HQ890526.1 27919 ............................................................ 27978 FJ882961.1 27952 ............................................................ 28011 FJ882958.1 27952 ............................................................ 28011 FJ882957.1 27952 ............................................................ 28011 FJ882956.1 27919 ............................................................ 27978 FJ882955.1 27919 ............................................................ 27978 FJ882954.1 27909 ............................................................ 27968 FJ882953.1 27921 ............................................................ 27980 FJ882952.1 27952 ............................................................ 28011 FJ882950.1 27919 ............................................................ 27978 FJ882949.1 27920 ............................................................ 27979 FJ882948.1 27952 ............................................................ 28011 FJ882945.1 27952 ............................................................ 28011 FJ882944.1 27901 ............................................................ 27960 FJ882943.1 27952 ............................................................ 28011 FJ882941.1 27938 ............................................................ 27997 FJ882940.1 27919 ............................................................ 27978 FJ882939.1 27919 ............................................................ 27978 FJ882938.1 27939 ............................................................ 27998 FJ882937.1 27921 ............................................................ 27980 FJ882936.1 27919 ............................................................ 27978 FJ882935.1 27920 ............................................................ 27979 FJ882934.1 27919 ............................................................ 27978 FJ882933.1 27921 ............................................................ 27980 FJ882932.1 27919 ............................................................ 27978 FJ882931.1 27919 ............................................................ 27978 FJ882930.1 27939 ............................................................ 27998 FJ882929.1 27938 ............................................................ 27997 FJ882928.1 27939 ............................................................ 27998 FJ882927.1 27939 ............................................................ 27998 FJ882926.1 27927 ............................................................ 27986 EU371559.1 27959 ............................................................ 28018 DQ898174.1 27959 ............................................................ 28018 DQ497008.1 27959 ............................................................ 28018 AY278741.1 27959 ............................................................ 28018 AY714217.1 27959 ............................................................ 28018 AY559097.1 27942 ............................................................ 28001 AY559091.1 27943 ............................................................ 28002 AY559090.1 27955 ............................................................ 28014 AY559089.1 27947 ............................................................ 28006 AY559088.1 27945 ............................................................ 28004 AY559081.1 27947 ............................................................ 28006 AY595412.1 27943 ...............................M............................ 28002 DQ182595.1 27943 ............................................................ 28002 NC_004718.3 27959 ............................................................ 28018 AY323977.2 27959 ............................................................ 28018 AY291315.1 27959 ............................................................ 28018 AY291451.1 27959 ............................................................ 28018 AY502931.1 27959 ............................................................ 28018 AY502930.1 27959 ............................................................ 28018 AY502929.1 27959 ............................................................ 28018 AY502928.1 27959 ............................................................ 28018 AY502927.1 27959 ............................................................ 28018 AY502926.1 27959 ............................................................ 28018 AY290752.2 1047 ............................................................ 1106 AY394998.1 27944 ............................................................ 28003 AY394991.1 27944 ............................................................ 28003 AY394980.1 27913 ............................................................ 27972 AY463060.1 27301 ............................................................ 27360 AY463059.1 27880 ............................................................ 27939 AY310120.1 27959 ............................................................ 28018 AY345986.1 27944 ............................................................ 28003 AY357076.1 27942 ............................................................ 28001 AY350750.1 27946 ............................................................ 28005 AY282752.2 27944 ............................................................ 28003 AY461660.1 27944 ............................................................ 28003 AY427439.1 27943 ............................................................ 28002 AY283798.2 27943 ............................................................ 28002 AY278491.2 27959 ............................................................ 28018 AY362699.1 27959 ............................................................ 28018 AY283794.1 27943 ............................................................ 28002 AY283796.1 27943 ............................................................ 28002 AY351680.1 27981 ............................................................ 28040 AY297028.1 27951 ............................................................ 28010 AP006557.1 27959 ............................................................ 28018 AY338174.1 27890 ............................................................ 27949 AY772062.1 27692 ............................................................ 27751 AY485277.1 27956 ............................................................ 28015 AY313906.1 27970 ............................................................ 28029 JX163927.1 27919 ............................................................ 27978 JX163925.1 27919 ............................................................ 27978 JF292922.1 27919 ............................................................ 27978 KF514407.1 27939 ............................................................ 27998 FJ882960.1 27919 ............................................................ 27978 FJ882963.1 27940 ............................................................ 27999 AY559096.1 27951 .................................................T.......... 28010 AY559095.1 27949 .................................................T.......... 28008 AY559093.1 27943 .................................................T.......... 28002 AY559087.1 27943 .................................................T.......... 28002 AY559085.1 27943 .................................................T.......... 28002 AY559084.1 27943 .................................................T.......... 28002 AY502932.1 27959 ............................................................ 28018 AY502924.1 27957 ............................................................ 28016 AY502923.1 27959 ............................................................ 28018 AY345988.1 27944 ............................................................ 28003 AY304493.1 9234 ............................................................ 9293 AP006561.1 27959 ............................................................ 28018 AP006560.1 27959 ............................................................ 28018 AP006559.1 27959 ............................................................ 28018 AP006558.1 27957 ............................................................ 28016 AY348314.1 27890 ............................................................ 27949 AY338175.1 27890 ............................................................ 27949 JX163923.1 27919 ............................................................ 27978 AY304494.1 9234 ............................................................ 9293 AY304491.1 9230 ............................................................ 9289 EU371560.1 27959 ............................................................ 28018 AY559092.1 27945 ............................................................ 28004 MK062182.1 27959 ............................................................ 28018 MK062181.1 27959 ............................................................ 28018 AY283795.1 27937 ............................................................ 27996 FJ882962.1 27952 ............................................................ 28011 FJ882959.1 27952 ............................................................ 28011 FJ882951.1 27952 ............................................................ 28011 FJ882942.1 27952 ............................................................ 28011 GU553365.1 27917 ............................................................ 27976 GU553363.1 27917 ............................................................ 27976 AY357075.1 27943 ............................................................ 28002 AY321118.1 27957 ............................................................ 28016 AY394850.2 27957 ............................................................ 28016 AY485278.1 27957 ............................................................ 28016 AY283797.1 27938 ............................................................ 27997 MK062184.1 28069 ............................................................ 28128 MK062183.1 28069 ............................................................ 28128 Consensus ATGGCACACTATGGTTCAAACATGCACACCTAATGTTACTATCAACTGTCAAGATCCAGC Mutated T DownloadNextPreviousFirst Range Query range 5: 241 to 300 Query 241 TGGTGGTGCGCTTATAGCTAGGTGTTGGTACCTTCACGAAGGTCACCAAACTGCTGCATT 300 AH013657.2 11711 ....................................T....................... 11770 DQ640652.1 28025 ....................................T....................... 28084 AY864806.1 28019 ....................................T....................... 28078 AY864805.1 28019 ....................................T....................... 28078 AY395004.1 27972 ....................................T....................... 28031 AY394993.1 28004 ....................................T....................... 28063 AY394992.1 28004 ....................................T....................... 28063 AY394990.1 28004 ....................................T....................... 28063 AY394989.1 28004 ....................................T....................... 28063 AY394987.1 27977 ....................................T....................... 28036 AY394983.1 27967 ....................................T....................... 28026 AY394977.1 27968 ....................................T....................... 28027 AY304495.1 28004 ....................................T....................... 28063 AY304492.1 11755 ....................................T....................... 11814 AY278554.2 28004 ....................................T....................... 28063 AY279354.2 28003 ....................................T....................... 28062 AY278490.3 28015 ....................................T....................... 28074 AY278487.3 28019 ....................................T....................... 28078 AY278488.2 28000 ....................................T....................... 28059 AY654624.1 28018 ....................................T....................... 28077 AY304490.1 11755 ....................................T....................... 11814 MT308984.1 28022 ....................................T....................... 28081 MK062180.1 28019 ....................................T....................... 28078 MK062179.1 28019 ....................................T....................... 28078 AH012999.2 17879 ....................................T....................... 17938 JX163928.1 27979 ....................................T....................... 28038 JX163926.1 27979 ....................................T....................... 28038 JX163924.1 27979 ....................................T....................... 28038 JX162087.1 27999 ....................................T....................... 28058 JN854286.1 28019 ....................................T....................... 28078 JQ316196.1 28019 ....................................T....................... 28078 JF292915.1 27979 ....................................T....................... 28038 JF292909.1 27979 ....................................T....................... 28038 JF292906.1 27979 ....................................T....................... 28038 JF292905.1 27979 ....................................T....................... 28038 JF292903.1 27979 ....................................T....................... 28038 HQ890541.1 27979 ....................................T....................... 28038 HQ890538.1 27979 ....................................T....................... 28038 HQ890535.1 27979 ....................................T....................... 28038 HQ890532.1 27979 ....................................T....................... 28038 HQ890531.1 27979 ....................................T....................... 28038 HQ890529.1 27979 ....................................T....................... 28038 HQ890526.1 27979 ....................................T....................... 28038 FJ882961.1 28012 ....................................T....................... 28071 FJ882958.1 28012 ....................................T....................... 28071 FJ882957.1 28012 ....................................T....................... 28071 FJ882956.1 27979 ....................................T....................... 28038 FJ882955.1 27979 ....................................T....................... 28038 FJ882954.1 27969 ....................................T....................... 28028 FJ882953.1 27981 ....................................T....................... 28040 FJ882952.1 28012 ....................................T....................... 28071 FJ882950.1 27979 ....................................T....................... 28038 FJ882949.1 27980 ....................................T....................... 28039 FJ882948.1 28012 ....................................T....................... 28071 FJ882945.1 28012 ....................................T....................... 28071 FJ882944.1 27961 ....................................T....................... 28020 FJ882943.1 28012 ....................................T....................... 28071 FJ882941.1 27998 ....................................T....................... 28057 FJ882940.1 27979 ....................................T....................... 28038 FJ882939.1 27979 ....................................T....................... 28038 FJ882938.1 27999 ....................................T....................... 28058 FJ882937.1 27981 ....................................T....................... 28040 FJ882936.1 27979 ....................................T....................... 28038 FJ882935.1 27980 ....................................T....................... 28039 FJ882934.1 27979 ....................................T....................... 28038 FJ882933.1 27981 ....................................T....................... 28040 FJ882932.1 27979 ....................................T....................... 28038 FJ882931.1 27979 ....................................T....................... 28038 FJ882930.1 27999 ....................................T....................... 28058 FJ882929.1 27998 ....................................T....................... 28057 FJ882928.1 27999 ....................................T....................... 28058 FJ882927.1 27999 ....................................T....................... 28058 FJ882926.1 27987 ....................................T....................... 28046 EU371559.1 28019 ....................................T....................... 28078 DQ898174.1 28019 ....................................T....................... 28078 DQ497008.1 28019 ....................................T....................... 28078 AY278741.1 28019 ....................................T....................... 28078 AY714217.1 28019 ....................................T....................... 28078 AY559097.1 28002 ....................................T....................... 28061 AY559091.1 28003 ....................................T....................... 28062 AY559090.1 28015 ....................................T....................... 28074 AY559089.1 28007 ....................................T....................... 28066 AY559088.1 28005 ....................................T....................... 28064 AY559081.1 28007 ....................................T....................... 28066 AY595412.1 28003 ....................................T....................... 28062 DQ182595.1 28003 ....................................T....................... 28062 NC_004718.3 28019 ....................................T....................... 28078 AY323977.2 28019 ....................................T....................... 28078 AY291315.1 28019 ....................................T....................... 28078 AY291451.1 28019 ....................................T....................... 28078 AY502931.1 28019 ....................................T....................... 28078 AY502930.1 28019 ....................................T....................... 28078 AY502929.1 28019 ....................................T....................... 28078 AY502928.1 28019 ....................................T....................... 28078 AY502927.1 28019 ....................................T....................... 28078 AY502926.1 28019 ....................................T....................... 28078 AY290752.2 1107 ....................................T....................... 1166 AY394998.1 28004 ....................................T....................... 28063 AY394991.1 28004 ....................................T....................... 28063 AY394980.1 27973 ....................................T....................... 28032 AY463060.1 27361 ....................................T....................... 27420 AY463059.1 27940 ....................................T....................... 27999 AY310120.1 28019 ....................................T....................... 28078 AY345986.1 28004 ....................................T....................... 28063 AY357076.1 28002 ....................................T....................... 28061 AY350750.1 28006 ....................................T....................... 28065 AY282752.2 28004 ....................................T....................... 28063 AY461660.1 28004 ....................................T....................... 28063 AY427439.1 28003 ....................................T....................... 28062 AY283798.2 28003 ....................................T....................... 28062 AY278491.2 28019 ....................................T....................... 28078 AY362699.1 28019 ....................................T....................... 28078 AY283794.1 28003 ....................................T....................... 28062 AY283796.1 28003 ....................................T....................... 28062 AY351680.1 28041 ....................................T....................... 28100 AY297028.1 28011 ....................................T....................... 28070 AP006557.1 28019 ....................................T....................... 28078 AY338174.1 27950 ....................................T....................... 28009 AY772062.1 27752 ....................................T....................... 27811 AY485277.1 28016 ....................................T....................... 28075 AY313906.1 28030 ....................................T....................... 28089 JX163927.1 27979 ....................................T....................... 28038 JX163925.1 27979 ....................................T....................... 28038 JF292922.1 27979 ....................................T....................... 28038 KF514407.1 27999 ....................................T....................... 28058 FJ882960.1 27979 ....................................T....................... 28038 FJ882963.1 28000 ....................................T....................... 28059 AY559096.1 28011 ....................................T....................... 28070 AY559095.1 28009 ....................................T....................... 28068 AY559093.1 28003 ....................................T....................... 28062 AY559087.1 28003 ....................................T....................... 28062 AY559085.1 28003 ....................................T....................... 28062 AY559084.1 28003 ....................................T....................... 28062 AY502932.1 28019 ....................................T....................... 28078 AY502924.1 28017 ....................................T....................... 28076 AY502923.1 28019 ....................................T....................... 28078 AY345988.1 28004 ....................................T....................... 28063 AY304493.1 9294 ........................C...........T....................... 9353 AP006561.1 28019 ....................................T....................... 28078 AP006560.1 28019 ....................................T....................... 28078 AP006559.1 28019 ....................................T....................... 28078 AP006558.1 28017 ....................................T....................... 28076 AY348314.1 27950 ....................................T....................... 28009 AY338175.1 27950 ....................................T....................... 28009 JX163923.1 27979 ....................................T....................... 28038 AY304494.1 9294 ....................................T....................... 9353 AY304491.1 9290 ....................................T....................... 9349 EU371560.1 28019 .A.G................................T....................... 28078 AY559092.1 28005 ....................................T....................... 28064 MK062182.1 28019 ....................................T....................... 28078 MK062181.1 28019 ....................................T....................... 28078 AY283795.1 27997 ....................................T....................... 28056 FJ882962.1 28012 ....................................T.......C............... 28072 \ | T FJ882959.1 28012 ....................................T.......C............... 28072 \ | T FJ882951.1 28012 ....................................T.......C............... 28072 \ | T FJ882942.1 28012 ....................................T.......C............... 28072 \ | T GU553365.1 27977 ....................................T....................... 28036 GU553363.1 27977 ....................................T....................... 28036 AY357075.1 28003 ....................................T....................... 28062 AY321118.1 28017 ....................................T....................... 28076 AY394850.2 28017 ....................................T....................... 28076 AY485278.1 28017 ....................................T....................... 28076 AY283797.1 27998 ....................................T....................... 28057 MK062184.1 28129 ....................................T....................... 28188 MK062183.1 28129 ....................................T....................... 28188 Consensus TGGTGGTGCGCTTATAGCTAGGTGTTGGTACCTTCATGAAGGTCACCAAACTGCTGCATT Mutated A G C C C DownloadNextPreviousFirst Range Query range 6: 301 to 340 Query 301 TAGAGACGTACTTGTTGTTCTAAATAAACGAACAAACTAA 340 AH013657.2 11771 ...................T................T... 11810 DQ640652.1 28085 ...................T................T... 28124 AY864806.1 28079 ...................T................T... 28118 AY864805.1 28079 ...................T................T... 28118 AY395004.1 28032 ...................T................T... 28071 AY394993.1 28064 ...................T................T... 28103 AY394992.1 28064 ...................T................T... 28103 AY394990.1 28064 ...................T................T... 28103 AY394989.1 28064 ...................T................T... 28103 AY394987.1 28037 ...................T................T... 28076 AY394983.1 28027 ...................T................T... 28066 AY394977.1 28028 ...................T................T... 28067 AY304495.1 28064 ...................T................T... 28103 AY304492.1 11815 ...................T................T... 11854 AY278554.2 28064 ...................T................T... 28103 AY279354.2 28063 ...................T................T... 28102 AY278490.3 28075 ...................T................T... 28114 AY278487.3 28079 ...................T................T... 28118 AY278488.2 28060 ...................T................T... 28099 AY654624.1 28078 ...................T................T... 28117 AY304490.1 11815 ...................T................T... 11854 MT308984.1 28082 ...................T................T... 28121 MK062180.1 28079 ...................T................T... 28118 MK062179.1 28079 ...................T................T... 28118 AH012999.2 17939 ...................T................T... 17978 JX163928.1 28039 ...................T................T... 28078 JX163926.1 28039 ...................T................T... 28078 JX163924.1 28039 ...................T................T... 28078 JX162087.1 28059 ...................T................T... 28098 JN854286.1 28079 ...................T................T... 28118 JQ316196.1 28079 ...................T................T... 28118 JF292915.1 28039 ...................T................T... 28078 JF292909.1 28039 ...................T................T... 28078 JF292906.1 28039 ...................T................T... 28078 JF292905.1 28039 ...................T................T... 28078 JF292903.1 28039 ...................T................T... 28078 HQ890541.1 28039 ...................T................T... 28078 HQ890538.1 28039 ...................T................T... 28078 HQ890535.1 28039 ...................T................T... 28078 HQ890532.1 28039 ...................T................T... 28078 HQ890531.1 28039 ...................T................T... 28078 HQ890529.1 28039 ...................T................T... 28078 HQ890526.1 28039 ...................T................T... 28078 FJ882961.1 28072 ...................T................T... 28111 FJ882958.1 28072 ...................T................T... 28111 FJ882957.1 28072 ...................T................T... 28111 FJ882956.1 28039 ...................T................T... 28078 FJ882955.1 28039 ...................T................T... 28078 FJ882954.1 28029 ...................T................T... 28068 FJ882953.1 28041 ...................T................T... 28080 FJ882952.1 28072 ...................T................T... 28111 FJ882950.1 28039 ...................T................T... 28078 FJ882949.1 28040 ...................T................T... 28079 FJ882948.1 28072 ...................T................T... 28111 FJ882945.1 28072 ...................T................T... 28111 FJ882944.1 28021 ...................T................T... 28060 FJ882943.1 28072 ...................T................T... 28111 FJ882941.1 28058 ...................T................T... 28097 FJ882940.1 28039 ...................T................T... 28078 FJ882939.1 28039 ...................T................T... 28078 FJ882938.1 28059 ...................T................T... 28098 FJ882937.1 28041 ...................T................T... 28080 FJ882936.1 28039 ...................T................T... 28078 FJ882935.1 28040 ...................T................T... 28079 FJ882934.1 28039 ...................T................T... 28078 FJ882933.1 28041 ...................T................T... 28080 FJ882932.1 28039 ...................T................T... 28078 FJ882931.1 28039 ...................T................T... 28078 FJ882930.1 28059 ...................T................T... 28098 FJ882929.1 28058 ...................T................T... 28097 FJ882928.1 28059 ...................T................T... 28098 FJ882927.1 28059 ...................T................T... 28098 FJ882926.1 28047 ...................T................T... 28086 EU371559.1 28079 ...................T................T... 28118 DQ898174.1 28079 ...................T................T... 28118 DQ497008.1 28079 ...................T................T... 28118 AY278741.1 28079 ...................T................T... 28118 AY714217.1 28079 ...................T................T... 28118 AY559097.1 28062 ...................T................T... 28101 AY559091.1 28063 ...................T................T... 28102 AY559090.1 28075 ...................T................T... 28114 AY559089.1 28067 ...................T................T... 28106 AY559088.1 28065 ...................T................T... 28104 AY559081.1 28067 ...................T................T... 28106 AY595412.1 28063 ...................T................ 28098 DQ182595.1 28063 ...................T................T... 28102 NC_004718.3 28079 ...................T................T... 28118 AY323977.2 28079 ...................T................T... 28118 AY291315.1 28079 ...................T................T... 28118 AY291451.1 28079 ...................T................T... 28118 AY502931.1 28079 ...................T................T... 28118 AY502930.1 28079 ...................T................T... 28118 AY502929.1 28079 ...................T................T... 28118 AY502928.1 28079 ...................T................T... 28118 AY502927.1 28079 ...................T................T... 28118 AY502926.1 28079 ...................T................T... 28118 AY290752.2 1167 ...................T................T... 1206 AY394998.1 28064 ...................T................T... 28103 AY394991.1 28064 ...................T................T... 28103 AY394980.1 28033 ...................T................T... 28072 AY463060.1 27421 ...................T................T... 27460 AY463059.1 28000 ...................T................T... 28039 AY310120.1 28079 ...................T................T... 28118 AY345986.1 28064 ...................T................T... 28103 AY357076.1 28062 ...................T................T... 28101 AY350750.1 28066 ...................T................T... 28105 AY282752.2 28064 ...................T................T... 28103 AY461660.1 28064 ...................T................T... 28103 AY427439.1 28063 ...................T................T... 28102 AY283798.2 28063 ...................T................T... 28102 AY278491.2 28079 ...................T................T... 28118 AY362699.1 28079 ...................T................T... 28118 AY283794.1 28063 ...................T................T... 28102 AY283796.1 28063 ...................T................T... 28102 AY351680.1 28101 ...................T................T... 28140 AY297028.1 28071 ...................T................T... 28110 AP006557.1 28079 ...................T................T... 28118 AY338174.1 28010 ...................T................T... 28049 AY772062.1 27812 ...................T................T... 27851 AY485277.1 28076 ...................T................T... 28115 AY313906.1 28090 ...................T................T... 28129 JX163927.1 28039 ...................T................T... 28078 JX163925.1 28039 ...................T................T... 28078 JF292922.1 28039 ...................T................T... 28078 KF514407.1 28059 ...................T................T... 28098 FJ882960.1 28039 ...................T................T... 28078 FJ882963.1 28060 ...................T................T... 28099 AY559096.1 28071 ...................T................T... 28110 AY559095.1 28069 ...................T................T... 28108 AY559093.1 28063 ...................T................T... 28102 AY559087.1 28063 ...................T................T... 28102 AY559085.1 28063 ...................T................T... 28102 AY559084.1 28063 ...................T................T... 28102 AY502932.1 28079 ...................T................T... 28118 AY502924.1 28077 ...................T................T... 28116 AY502923.1 28079 ...................T................T... 28118 AY345988.1 28064 ...................T...C............T... 28103 AY304493.1 9354 ...................T................T... 9393 AP006561.1 28079 ...................T................T... 28118 AP006560.1 28079 ...................T................T... 28118 AP006559.1 28079 ...................T................T... 28118 AP006558.1 28077 ...................T................T... 28116 AY348314.1 28010 ...................T................T... 28049 AY338175.1 28010 ...................T................T... 28049 JX163923.1 28039 ...................T................T... 28078 AY304494.1 9354 ...................T................T... 9393 AY304491.1 9350 ...................T................T... 9389 EU371560.1 28079 ...................T................T... 28118 AY559092.1 28065 ...................T.-..............T... 28103 MK062182.1 28079 ...................T.......C..G.T...T... 28118 MK062181.1 28079 ...................T.......C..G.T...T... 28118 AY283795.1 28057 ...................T................T... 28096 FJ882962.1 28073 ...................T................T... 28112 FJ882959.1 28073 ...................T................T... 28112 FJ882951.1 28073 ...................T................T... 28112 FJ882942.1 28073 ...................T................T... 28112 GU553365.1 28037 ...................T................T... 28076 GU553363.1 28037 ...................T................T... 28076 AY357075.1 28063 ...................T................T... 28102 AY321118.1 28077 ...................T................T... 28116 AY394850.2 28077 ...................T................T... 28116 AY485278.1 28077 ...................T................T... 28116 AY283797.1 28058 ...................T................T... 28097 MK062184.1 28189 ...... 28194 MK062183.1 28189 ...... 28194 Consensus TAGAGACGTACTTGTTGTTTTAAATAAACGAACAAATTAA Mutated C C C G T C