{"text_format":"3","workbook":"xls","n_sheets":6,"sheets":["Table S1","Table S2","Table S3","Table S4","Table S5","Table S6"],"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"Table S1","index":0,"n_rows":21,"n_cols":6,"rows_kept":21,"merged":[[0,0,0,5]],"flags":["formulas_cached_only"]}
["Table 1. Number of obtaneid reads by Illumina NextSeq 500/550"]
["Samples","RawData","after Fastp","after Bowtie","after SortMeRNA","% of reads rest"]
["Pool _Afua_01",68897200,65210962,14582910,14432748,{"v":20.9482359225048,"d":"20.95"}]
["Pool _Afua_02",48764254,45471274,12147434,11945667,{"v":24.4967697034799,"d":"24.50"}]
["Pool _Afua_03",46661326,43826698,12797602,12623358,{"v":27.0531488967973,"d":"27.05"}]
["Pool _Anajas_01",52740048,49719452,11308854,11215366,{"v":21.2653693451322,"d":"21.27"}]
["Pool _Anajas_02",46319712,43777814,10119862,10031116,{"v":21.6562572755202,"d":"21.66"}]
["Pool_Bagre_01",44348598,39161244,18269338,17919891,{"v":40.4068940352974,"d":"40.41"}]
["Pool_Bagre_02",46482444,43036296,13805714,13473834,{"v":28.986931065845,"d":"28.99"}]
["Pool_Bagre_03",36308636,32794428,12810102,12251467,{"v":33.7425702248908,"d":"33.74"}]
["Pool_Breves_01",28852540,26604146,10622666,10544571,{"v":36.5464219094749,"d":"36.55"}]
["Pool_Gurupa_01",43110996,40154238,10848806,10608041,{"v":24.6063463715846,"d":"24.61"}]
["Pool_Gurupa_02",27102354,25162422,8421008,8332322,{"v":30.7439051235181,"d":"30.74"}]
["Pool_Melgaço_01",67910466,59941550,10800472,10542185,{"v":15.5236528637574,"d":"15.52"}]
["Pool_Melgaço_02",45632244,36002780,6892354,6690273,{"v":14.6612842445355,"d":"14.66"}]
["Pool_Melgaço_03",55266730,49366082,9012324,8830352,{"v":15.9776994224192,"d":"15.98"}]
["Pool_Melgaço_04",53481074,47863842,6343366,6188324,{"v":11.5710540891531,"d":"11.57"}]
["Pool_Melgaço_05",33944984,29103064,5286496,5167228,{"v":15.2223609827007,"d":"15.22"}]
["Pool_Melgaço_06",57216974,49978062,6092276,5858776,{"v":10.2395768080989,"d":"10.24"}]
["Pool_Soure_01",37085288,34356908,11858726,11768003,{"v":31.7322680627423,"d":"31.73"}]
["Total",840125868,761531262,192020310,188423522]

{"sheet":"Table S2","index":1,"n_rows":20,"n_cols":11,"rows_kept":20,"merged":[[0,0,0,10]],"flags":["formulas_cached_only"]}
["Table 2. Classification of reads by Kraken Software"]
["Name","Number of raw reads","Classified reads","Chordate reads","Artificial reads","Unclassified reads","Microbial reads","Bacterial reads","Viral reads","Fungal reads","Protozoan reads"]
["Pool_Melgaço_01",29970775,16183575,11132419,165,13787200,4944274,658059,23388,106996,22978]
["Pool_Melgaço_02",18001390,9678495,6966028,137,8322895,2648460,285848,13662,66649,12890]
["Pool_Melgaço_03",24683041,13597346,9663300,155,11085695,3859749,377843,19796,89756,18430]
["Pool_Melgaço_04",23931921,13422271,9198770,185,10509650,4148664,372404,19611,86356,19769]
["Pool_Melgaço_05",14551532,8207046,5935571,94,6344486,2229328,216879,10577,51101,10364]
["Pool_Melgaço_06",24989031,13351919,8970133,172,11637112,4289217,399268,21105,89954,20907]
["Pool_Afua_01",32605481,20803434,14176929,233,11802047,6558192,402339,26288,118389,29352]
["Pool_Afua_02",22735637,14419830,10127289,166,8315807,4243845,251974,16814,77927,18687]
["Pool_Afua_03",21913349,13703470,9392053,147,8209879,4259565,279738,17976,82099,19446]
["Pool_Anajas_01",24859726,16445534,11192749,175,8414192,5209031,264995,18536,82574,21947]
["Pool_Anajas_02",21888907,14161902,9541126,149,7727005,4577371,268689,17398,77588,19968]
["Pool_Bagre_01",19580622,10492668,7590378,149,9087954,2852318,252287,14242,74801,12909]
["Pool_Bagre_02",21518148,13679291,9534582,124,7838857,4089926,237103,15746,73473,17707]
["Pool_Bagre_03",16397214,10248005,7166040,115,6149209,3022799,175697,11601,56091,12392]
["Pool_Breves_01",13302073,8448332,5879551,70,4853741,2543672,151586,10102,46021,11104]
["Pool_Gurupa_01",20077119,12745591,8871232,111,7331528,3827649,227392,15095,69504,16538]
["Pool_Gurupa_02",12581211,8108979,5591385,88,4472232,2492809,138743,9790,43038,10906]
["Pool_Soure_01",17178454,11326385,7841667,107,5852069,3455661,179190,12397,55636,14264]

{"sheet":"Table S3","index":2,"n_rows":19,"n_cols":23,"rows_kept":19,"merged":[[0,0,0,22]],"flags":["formulas_cached_only"]}
["Table 3. Metrics of Megahit"]
["Assembly","# contigs (>= 0 bp)","# contigs (>= 1000 bp)","# contigs (>= 5000 bp)","# contigs (>= 10000 bp)","# contigs (>= 25000 bp)","# contigs (>= 50000 bp)","Total length (>= 0 bp)","Total length (>= 1000 bp)","Total length (>= 5000 bp)","Total length (>= 10000 bp)","Total length (>= 25000 bp)","Total length (>= 50000 bp)"," contigs","Largest contig","Total length","GC (%)","N50","N90","auN","L50","L90","# N's per 100 kbp"]
["Pool _Afua_01",381219,534,1,0,0,0,144679206,702827,5208,0,0,0,39103,5208,23440129,"41.89",577,511,"627.5",17101,34463,"0.00"]
["Pool _Afua_02",301118,496,1,0,0,0,114534490,681749,5066,0,0,0,30156,5066,18171016,"43.26",578,511,"638.5",13109,26561,"0.00"]
["Pool _Afua_03",308494,234,0,0,0,0,112649385,298545,0,0,0,0,23256,2918,13686810,"42.53",567,510,"609.9",10309,20543,"0.00"]
["Pool _Anajas_01",291070,556,0,0,0,0,110726832,734671,0,0,0,0,30145,3704,18288071,"39.77",582,512,"639.8",13053,26528,"0.00"]
["Pool _Anajas_02",213701,440,0,0,0,0,80692823,581349,0,0,0,0,20969,4023,12762607,"39.87",582,512,"645.6",9042,18445,"0.00"]
["Pool_Bagre_01",670485,1218,6,2,0,0,259273964,1483267,52144,22167,0,0,90820,11143,55439468,"51.84",591,514,"641.6",39365,79871,"0.00"]
["Pool_Bagre_02",410339,522,0,0,0,0,155236561,680709,0,0,0,0,41822,4904,25017170,"42.43",576,511,"624.6",18341,36871,"0.00"]
["Pool_Bagre_03",339232,362,1,0,0,0,127636402,468593,5031,0,0,0,32964,5031,19602903,"43.77",574,511,"619.1",14515,29083,"0.00"]
["Pool_Breves_01",250153,259,0,0,0,0,92918699,334572,0,0,0,0,21514,3800,12768935,"42.37",571,510,"618.0",9475,18985,"0.00"]
["Pool_Gurupa_01",228297,374,0,0,0,0,85231404,506660,0,0,0,0,20104,3931,12088467,"42.99",576,511,"637.4",8735,17710,"0.00"]
["Pool_Gurupa_02",161965,199,0,0,0,0,59156064,274910,0,0,0,0,11337,3735,6751327,"41.45",568,510,"631.9",4954,10000,"0.00"]
["Pool_Melgaço_01",70668,792,0,0,0,0,26983672,1088411,0,0,0,0,7499,4564,5287607,"50.67",661,519,"825.5",2785,6460,"0.00"]
["Pool_Melgaço_02",34161,67,0,0,0,0,12266319,88983,0,0,0,0,2018,3670,1243915,"47.39",582,512,"668.1",854,1772,"0.00"]
["Pool_Melgaço_03",71415,136,0,0,0,0,25857897,180120,0,0,0,0,4419,3673,2704546,"47.00",579,511,"661.6",1878,3884,"0.00"]
["Pool_Melgaço_04",32198,111,0,0,0,0,11748864,139009,0,0,0,0,2323,2145,1482357,"44.57",604,513,"689.7",955,2031,"0.00"]
["Pool_Melgaço_05",26908,72,0,0,0,0,9900534,99200,0,0,0,0,1992,4915,1245036,"47.67",586,512,"695.3",830,1746,"0.00"]
["Pool_Melgaço_06",22903,112,0,0,0,0,8340265,147165,0,0,0,0,1663,3175,1091757,"44.35",613,513,"731.8",660,1448,"0.00"]

{"sheet":"Table S4","index":3,"n_rows":19,"n_cols":23,"rows_kept":19,"merged":[[0,0,0,22]],"flags":["formulas_cached_only"]}
["Table 4. Metrics of Spades"]
["Assembly","# contigs (>= 0 bp)","# contigs (>= 1000 bp)","# contigs (>= 5000 bp)","# contigs (>= 10000 bp)","# contigs (>= 25000 bp)","# contigs (>= 50000 bp)","Total length (>= 0 bp)","Total length (>= 1000 bp)","Total length (>= 5000 bp)","Total length (>= 10000 bp)","Total length (>= 25000 bp)","Total length (>= 50000 bp)"," contigs","Largest contig","Total length","GC (%)","N50","N90","auN","L50","L90","# N's per 100 kbp"]
["Pool _Afua_01",1428318,442,1,0,0,0,419572162,606105,5385,0,0,0,40626,5385,24023847,"41.55",568,510,"619.4",17913,35865,"0.00"]
["Pool _Afua_02",1284443,353,1,0,0,0,375501676,482818,7867,0,0,0,34207,7867,20177542,"42.97",567,510,"618.4",15120,30207,"0.00"]
["Pool _Afua_03",1253624,164,1,1,0,0,359468947,216204,10618,10618,0,0,24005,10618,13899146,"42.13",558,508,"603.0",10759,21246,"0.00"]
["Pool _Anajas_01",1199401,471,1,0,0,0,353941466,625232,7685,0,0,0,34374,7685,20511987,"39.35",572,510,"627.9",15040,30311,"0.00"]
["Pool _Anajas_02",1023730,329,0,0,0,0,299722576,443545,0,0,0,0,26257,4581,15557616,"39.45",569,510,"622.9",11558,23174,"0.00"]
["Pool_Bagre_01",1928354,459,3,2,0,0,575369998,626701,38094,30214,0,0,66788,15241,39417789,"51.22",570,510,"622.8",29578,58979,"0.00"]
["Pool_Bagre_02",1451742,333,0,0,0,0,430817278,445933,0,0,0,0,41907,4946,24611406,"42.12",567,509,"610.0",18615,37028,"0.00"]
["Pool_Bagre_03",1348141,182,0,0,0,0,395714881,248307,0,0,0,0,33777,4091,19649190,"43.39",562,509,"600.4",15119,29881,"0.00"]
["Pool_Breves_01",1091567,137,1,0,0,0,317712148,181061,6745,0,0,0,23541,6745,13677015,"41.96",562,509,"600.9",10547,20828,"0.00"]
["Pool_Gurupa_01",1083004,245,2,0,0,0,312884239,343585,12533,0,0,0,23398,6431,13733674,"42.57",563,509,"617.6",10363,20674,"0.00"]
["Pool_Gurupa_02",812483,135,1,0,0,0,231390275,192995,7466,0,0,0,13137,7466,7668600,"41.00",560,509,"618.7",5842,11615,"0.00"]
["Pool_Melgaço_01",465067,692,0,0,0,0,126975615,942515,0,0,0,0,6907,4983,4810153,"50.95",653,517,"806.8",2576,5960,"0.00"]
["Pool_Melgaço_02",303080,31,0,0,0,0,79777719,39820,0,0,0,0,1335,2238,789935,"48.15",561,508,"626.5",584,1179,"0.00"]
["Pool_Melgaço_03",478100,79,0,0,0,0,130172016,109592,0,0,0,0,3891,3666,2306267,"47.34",561,508,"636.9",1696,3434,"0.00"]
["Pool_Melgaço_04",301990,68,0,0,0,0,80925934,88295,0,0,0,0,1863,2538,1153097,"44.38",580,510,"669.1",780,1635,"0.00"]
["Pool_Melgaço_05",267995,48,1,0,0,0,71176212,76077,8087,0,0,0,1394,8087,868334,"48.92",576,510,"756.4",576,1222,"0.00"]
["Pool_Melgaço_06",236595,54,0,0,0,0,62925199,75557,0,0,0,0,1427,3553,896067,"43.59",587,511,"696.4",589,1250,"0.00"]

{"sheet":"Table S5","index":4,"n_rows":33,"n_cols":5,"rows_kept":33,"merged":[[0,0,0,4],[8,1,9,1],[8,2,9,2],[8,3,9,3],[8,4,9,4]],"flags":["formulas_cached_only"]}
["Table 5. Accession numbers of NCBI Betaretrovirus sequences used in phylogenetic inference"]
["Accession code (NCBI)","Virus","Host","Local","Submission date (mm/dd/yy)"]
["KP175583","Desmodus rotundus endogenous retrovirus ","Desmodus rotundus","Mexico","03/21/2013"]
["KP175581","Desmodus rotundus endogenous retrovirus ","Desmodus rotundus","Mexico","03/21/2013"]
["KP175580","Desmodus rotundus endogenous retrovirus","Desmodus rotundus","Germany","2012-02-11"]
["NC_001514","Squirrel monkey retrovirus","-","-","-"]
["M23385 PCSLTRA","Squirrel monkey retrovirus","-","-","-"]
["NC_001550","Mason-Pfizer monkey virus","-","-","-"]
["M11841","Simian SRV-1 type D retrovírus","-","-","-"]
["SIVRV1CG"]
["NC_014474","Simian retrovirus 4 ","Macaca fascicularis"]
["NC_001885","Gibbon ape leukemia virus","-","-","-"]
["D10032","Baboon endogenous virus","-","-","-"]
["AF224725","Trichosurus vulpecula retrovirus","-","-","-"]
["NC_001494","Jaagsiekte sheep retrovirus","-","-","-"]
["NC_007015","Ovine enzootic nasal tumour virus","Ovis aries","-","-"]
["NC_004994","Enzootic nasal tumour virus of goats","-","-","-"]
["NC_001503","Mouse mammary tumor virus","-","-","-"]
["NC_001362","Friend murine leukemia virus FB29","-","-","-"]
["NC_001819","Rauscher murine leukemia virus","-","-","-"]
["NC_001501","Moloney murine leukemia virus","-","-","-"]
["NC_001702","Murine type C retrovirus","-","-","-"]
["AF228552","Exogenous mouse mammary tumor virus C3H","Mus musculus","-","-"]
["NC_007815","PreXMRV-1 provirus","Mus musculus","-","-"]
["AF053745","Mus dunni endogenous virus","-","-","-"]
["NC_009889","RD114 retrovirus","-","EUA","-"]
["NC_001940","Feline leukemia virus","-","-","-"]
["NC_006934","Reticuloendotheliosis virus","Gallus gallus","China","-"]
["AF074086","Homo sapiens tandemly repeated human endogenous retrovirus ","-","-","-"]
["AY037929","Human endogenous retrovirus K115","Homo sapiens","-","-"]
["AY037928","Human endogenous retrovirus K113","Homo sapiens","-","-"]
["AF248269","Human mammary tumor virus","Homo sapiens","-","-"]
["AF346816","Human mammary tumor virus","Homo sapiens","-","-"]

{"sheet":"Table S6","index":5,"n_rows":20,"n_cols":12,"rows_kept":20,"merged":[[0,0,0,9]],"flags":["formulas_cached_only"]}
["Table 6. Identification of Samples"]
["sample pool","registration number of samples","organism","sample type","host","isolation source","collection date","Geolocation name","Latitude and longitude","biosample_accession","accession (SRA)","bioproject_accession"]
["AFU01","48240\n48242\n48399\n48400","bat","tissue: lung","Desmodus rotundus","Marajo Island","07/08/2019","Brazil:Para, Afua","-0.156944, -50.386944","SAMN35848906","SRR25239943","PRJNA985242"]
["AFU02","48401\n48402\n48403\n48404","bat","tissue: lung","Desmodus rotundus","Marajo Island","09/09/2019","Brazil:Para, Afua","-0.156944, -50.386944","SAMN35848907","SRR25239942","PRJNA985242"]
["AFU03","48405\n48406\n48407\n48408","bat","tissue: lung","Desmodus rotundus","Marajo Island","09/09/2019","Brazil:Para, Afua","-0.156944, -50.386944","SAMN35848908","SRR25239933","PRJNA985242"]
["ANJ01","48017\n48018\n46389","bat","tissue: lung","Desmodus rotundus","Marajo Island","04/04/2019","Brazil:Para, Anajas","-0.986944, -49.94","SAMN35848909","SRR25239932","PRJNA985242"]
["ANJ02","46390\n46391\n46392","bat","tissue: lung","Desmodus rotundus","Marajo Island","05/24/2018","Brazil:Para, Anajas","-0.986944, -49.94","SAMN35848910","SRR25239931","PRJNA985242"]
["BGE01","47331\n47332\n47333","bat","tissue: lung","Desmodus rotundus","Marajo Island","10/22/2018","Brazil:Para, Bagre","-1.9, -50.163889","SAMN35848911","SRR25239930","PRJNA985242"]
["BGE02","48920\n48921\n48922\n48923\n48947","bat","tissue: lung","Desmodus rotundus","Marajo Island","07/30/2020","Brazil:Para, Bagre","-1.9, -50.163889","SAMN35848912","SRR25239929","PRJNA985242"]
["BGE03","48948\n48949\n48950\n48951\n48952","bat","tissue: lung","Desmodus rotundus","Marajo Island","08/31/2020","Brazil:Para, Bagre","-1.9, -50.163889","SAMN35848913","SRR25239928","PRJNA985242"]
["BRE01","46695\n46696\n46697","bat","tissue: lung","Desmodus rotundus","Marajo Island","12/07/2018","Brazil:Para, Breves","-1.681944, -50.48","SAMN35848914","SRR25239927","PRJNA985242"]
["GUR01","49409\n49410\n49411\n49412\n49413","bat","tissue: lung","Desmodus rotundus","Marajo Island","09/09/2019","Brazil:Para, Gurupa","-1.405, -51.64","SAMN35848915","SRR25239926","PRJNA985242"]
["GUR02","48410\n48411\n48412\n48413","bat","tissue: lung","Desmodus rotundus","Marajo Island","07/22/2021","Brazil:Para, Gurupa","-1.405, -51.64","SAMN35848916","SRR25239941","PRJNA985242"]
["MEL01","47773\n47774\n47775\n48103\n48104","bat","tissue: lung","Desmodus rotundus","Marajo Island","02/08/2019","Brazil:Para, Melgaco","-1.805956, -50.716667","SAMN35848917","SRR25239940","PRJNA985242"]
["MEL02","40105\n48106\n48107\n48108\n48109","bat","tissue: lung","Desmodus rotundus","Marajo Island","04/30/2019","Brazil:Para, Melgaco","-1.805956, -50.716667","SAMN35848918","SRR25239939","PRJNA985242"]
["MEL03","48110\n48111\n48112\n48250\n48251","bat","tissue: lung","Desmodus rotundus","Marajo Island","04/30/2019","Brazil:Para, Melgaco","-1.805956, -50.716667","SAMN35848919","SRR25239938","PRJNA985242"]
["MEL04","48110\n48111\n48112\n48250\n48251","bat","tissue: lung","Desmodus rotundus","Marajo Island","07/15/2019","Brazil:Para, Melgaco","-1.805956, -50.716667","SAMN35848920","SRR25239937","PRJNA985242"]
["MEL05","48605\n48606\n48607\n48608\n48609","bat","tissue: lung","Desmodus rotundus","Marajo Island","12/06/2019","Brazil:Para, Melgaco","-1.805956, -50.716667","SAMN35848921","SRR25239936","PRJNA985242"]
["MEL06","46251\n46265\n46266\n46424\n46425","bat","tissue: lung","Desmodus rotundus","Marajo Island","05/15/2018","Brazil:Para, Melgaco","-1.805956, -50.716667","SAMN35848922","SRR25239935","PRJNA985242"]
["SOU01","46384\n46385\n46386\n46387\n46388","bat","tissue: lung","Desmodus rotundus","Marajo Island","05/24/2018","Brazil:Para, Soure","-0.716944, -48.522778","SAMN35848923","SRR25239934","PRJNA985242"]