FastQCFastQC Report
Fri 2 Feb 2024
bamboo22.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamebamboo22.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3908291
Sequences flagged as poor quality0
Sequence length500-2500
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCCTGTACTTCGTTCAGTTACGTATTGCTGGTAGTATATACAGAGTC120740.3089329837517217No Hit
TTGTCCTGTACTTCGTTCAGTTACGTATTGCTGGTAGTATATACAGAGTC77710.19883371018176488No Hit
ATGCCCTGTACTTCGTTCAGTTACGTATTGCTGGTAGTATATACAGAGTC72050.1843516769861814No Hit
ATGTACTTCGTTCAGTTACGTATTGCTGGTAGTATATACAGAGTCGAGCA67160.17183981438434345No Hit
TGTCCTGTACTTCGTTCAGTTACGTATTGCTGGTAGTATATACAGAGTCG49770.1273446629230014No Hit
ATGTACTGTACTTCGTTCAGTTACGTATTGCTGGTAGTATATACAGAGTC47650.12192029713242951No Hit
TGTACTTCGTTCAGTTACGTATTGCTGGTAGTATATACAGAGTCGAGCAG46480.11892666129517991No Hit
ATGTCCTGTACTTCGTTCAGTTACGTATTGCTGGTAGCTCACTACGCGCG42610.10902463506427745No Hit
ATGTGCCTGTACTTCGTTCAGTTACGTATTGCTGGTAGTATATACAGAGT40680.10408641526437003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)