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["Table S3. Candidate transcripts involved in seed shattering found in two genotypes at three developmental stages "]
["Gene function","ID","XH09-7-1_FPKM","XH09-7-2_FPKM","XH09-7-3_FPKM","ZhN03-7-1_FPKM","ZhN03-7-2_FPKM","ZhN03-7-3_FPKM","FDR","log2FC","regulated","COG_class","COG_class_annotation","GO_annotation","KEGG_annotation","KOG_class","KOG_class_annotation","Pfam_annotation","Swissprot_annotation","nr_annotation"]
["Cell wall hydrolysis/modification (5)"]
[null,"c39452.graph_c0",0,0,0,2.49138196152713,1.06589355742069,1.09846671516961,0.00723706368533505,"Inf","up","--","--","Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: ketol-acid reductoisomerase activity (GO:0004455);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: cell wall (GO:0005618);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolysis (GO:0006096);; Biological Process: purine nucleotide biosynthetic process (GO:0006164);; Biological Process: isoleucine biosynthetic process (GO:0009097);; Biological Process: valine biosynthetic process (GO:0009099);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: isomerase activity (GO:0016853);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: oxidation-reduction process (GO:0055114);; Molecular Function: NADPH binding (GO:0070402);; ","K00053|5.37461e-10|zma:100382989|uncharacterized LOC100382989; K00053 ketol-acid reductoisomerase [EC:1.1.1.86] (A)","--","--","--","Ketol-acid reductoisomerase, chloroplastic (Precursor) GN=OJ1735_C10.18 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","Ketol-acid reductoisomerase, chloroplastic [Triticum urartu]"]
[null,"c51798.graph_c0",0,0,0,3.45610069120482,2.50919258536654,3.69410316789621,0.00712012009012012,"Inf","up","--","--","--","--","[M]","Cell wall/membrane/envelope biogenesis ","--","--","unnamed protein product [Triticum aestivum]"]
[null,"c27052.graph_c0",0,0.177556241188663,0,2.91635185434313,3.32722502420389,8.06800777900784,0.00715298046431368,6.32873190871773,"up","[E]","Amino acid transport and metabolism ","Biological Process: tryptophan biosynthetic process (GO:0000162);; Molecular Function: tryptophan synthase activity (GO:0004834);; Cellular Component: chloroplast stroma (GO:0009570);; Molecular Function: indole-3-glycerol-phosphate lyase activity (GO:0033984);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: defense response by callose deposition in cell wall (GO:0052544);; ","K01695|1.99577e-47|obr:102700254|tryptophan synthase alpha chain-like; K01695 tryptophan synthase alpha chain [EC:4.2.1.20] (A)","[E]","Amino acid transport and metabolism ","Tryptophan synthase alpha chain;; Histidine biosynthesis protein;; PcrB family","Tryptophan synthase alpha chain, chloroplastic (Precursor) GN=T14E10.210 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","PREDICTED: tryptophan synthase alpha chain-like [Oryza brachyantha]"]
[null,"c60174.graph_c0",14.5391934611556,7.11255443539072,8.1700236921255,0,0,0,1.86857657280135e-08,{"$error":"#NAME?"},"down","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|2.16577e-148|bdi:100831194|cationic peroxidase SPC4-like; K00430 peroxidase [EC:1.11.1.7] (A)","--","--","Peroxidase","Peroxidase 12 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Peroxidase 12 [Aegilops tauschii]"]
[null,"c14950.graph_c0",0,0.1339581394289,0,1.16484106385016,2.95322415769455,1.82608389951001,0.00343705024296667,5.46013760464077,"up","--","--","--","K00430|6.2562e-11|bdi:100844420|peroxidase 2-like; K00430 peroxidase [EC:1.11.1.7] (A)","--","--","--","--","Peroxidase 2 [Triticum urartu]"]
["Hydrolase activity (4)"]
[null,"c72047.graph_c1",87.8714289336595,66.3343056478988,68.1488487792279,10.6713388475072,18.0841778852915,15.9220085269892,2.00945231973472e-06,-2.39461913328604,"down","[I]","Lipid transport and metabolism ","Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[V]","Defense mechanisms ","alpha/beta hydrolase fold;; Alpha/beta hydrolase family;; Carboxylesterase family","Probable carboxylesterase 15 GN=CXE15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c30667.graph_c0",1.54472981680075,1.44093784004208,1.46044530451257,0,0,0,2.16347866891233e-06,{"$error":"#NAME?"},"down","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: nucleobase-containing compound metabolic process (GO:0006139);; Cellular Component: membrane (GO:0016020);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","Reverse transcriptase-like;; zinc-binding in reverse transcriptase","Putative ribonuclease H protein At1g65750 GN=At1g65750 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] "]
[null,"c54680.graph_c1",19.8685557561661,14.9394950887192,17.8782066763738,1.21733728364033,1.1904369202108,2.04469343156073,1.72281893749324e-05,-3.63708687324268,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; ","K16292|7.15535e-16|osa:4346292|Os08g0556900; K16292 KDEL-tailed cysteine endopeptidase [EC:3.4.22.-] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Cathepsin propeptide inhibitor domain (I29)","Cysteine proteinase EP-B 2 (Precursor) GN=EPB2 OS=Hordeum vulgare (Barley) PE=1 SV=1","Os08g0556900 [Oryza sativa Japonica Group] "]
[null,"c27685.graph_c0",2.23459477653656,5.76946000785097,6.2374049595684,0,0,0.436932432529518,0.00862334578578399,-5.04734568779689,"down","--","--","Molecular Function: phospholipase activity (GO:0004620);; Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: phosphoric diester hydrolase activity (GO:0008081);; Molecular Function: ion binding (GO:0043167);; Biological Process: response to stimulus (GO:0050896);; ","K01115|2.19156e-07|mus:103993201|phospholipase D gamma 1-like; K01115 phospholipase D1/2 [EC:3.1.4.4] (A)","[I]","Lipid transport and metabolism ","--","Phospholipase D gamma 1 GN=PLDGAMMA1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","hypothetical protein OsJ_32215 [Oryza sativa Japonica Group]"]
["Phytohormone metabolism/signaling/response (3)"]
[null,"c50676.graph_c0",0,0.0219517816285493,0,15.4615261061713,13.4779015191016,15.8847206064018,1.00109676994082e-36,10.9881882323448,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Cellular Component: ubiquitin ligase complex (GO:0000151);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to hormone (GO:0009725);; Cellular Component: intracellular non-membrane-bounded organelle (GO:0043232);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: intracellular organelle part (GO:0044446);; ","K03347|0|zma:103635893|cullin-1-like; K03347 cullin 1 (A)","[D]","Cell cycle control, cell division, chromosome partitioning ","Cullin family;; Cullin protein neddylation domain;; Cullin family","Cullin-1 GN=CUL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","PREDICTED: cullin-1-like [Zea mays] "]
[null,"c23015.graph_c0",3.12908340920279,2.91883709366488,3.90925139556415,0,0,0,8.76935891114909e-07,{"$error":"#NAME?"},"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to anoxia (GO:0034059);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF071 GN=ERF071 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","hypothetical protein AMTR_s00010p00098700 [Amborella trichopoda] "]
[null,"c24235.graph_c0",4.80131882748467,4.9585754430249,4.25251944828895,0,0,0,0.00164254572976986,{"$error":"#NAME?"},"down","--","--","Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K14513|4.93869e-39|bdi:100840471|ethylene-insensitive protein 2-like; K14513 ethylene-insensitive protein 2 (A)","[P]","Inorganic ion transport and metabolism ","--","Ethylene-insensitive protein 2 GN=F12E4.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Nramp domain-containing protein [Triticum aestivum]"]
["Transcription factor(1)"]
[null,"c32864.graph_c0",0.15591748414441,0,0,6.06751503050144,6.56735105120672,5.8534451152366,1.39111657816043e-06,6.7039047349363,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: zinc ion binding (GO:0008270);; ","K15601|1.34916e-39|dosa:Os02t0109400-00|Os02g0109400; Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein.; K15601 lysine-specific demethylase 3 [EC:1.14.11.-] (A)","[K]","Transcription ","JmjC domain, hydroxylase","Lysine-specific demethylase JMJ25 GN=MLP3.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","unnamed protein product [Triticum aestivum] "]
["Protein kinase activity(5)"]
[null,"c34865.graph_c0",2.34268821607056,2.96378681116918,3.06521495482747,0,0,0.0687102067668242,1.5835148813075e-07,-6.97278745085505,"down","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ion binding (GO:0043167);; ","K04733|3.20506e-109|obr:102722061|wall-associated receptor kinase 4-like; K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] (A)","--","--","Protein tyrosine kinase;; Protein kinase domain","Wall-associated receptor kinase 5 (Precursor) GN=WAK5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Wall-associated receptor kinase 5 [Triticum urartu]"]
[null,"c42329.graph_c0",0,0,0,2.8990035741474,2.40540553750589,0.929592559116125,0.000445556925799929,"Inf","up","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Molecular Function: polysaccharide binding (GO:0030247);; ","--","--","--","Calcium-binding EGF domain","Wall-associated receptor kinase 3 (Precursor) GN=WAK3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","Wall-associated receptor kinase 5 [Aegilops tauschii]"]
[null,"c68413.graph_c0",0.17531745008252,0.241412782320436,0.244681036608004,7.347267824442,8.44892200075383,5.27911800072126,7.67267816121375e-09,4.93741135296166,"up","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: ion binding (GO:0043167);; ","--","--","--","Protein kinase domain;; Protein tyrosine kinase;; Wall-associated receptor kinase galacturonan-binding;; EGF-like domain;; Calcium-binding EGF domain;; Ulp1 protease family, C-terminal catalytic domain","Wall-associated receptor kinase 2 (Precursor) GN=WAK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Wall-associated receptor kinase 2 [Aegilops tauschii]"]
[null,"c70081.graph_c0",0.06148925485671,0,0.0643629083051001,4.23350187312639,2.72996781126512,2.45270265380492,3.79105088301862e-07,6.13188244486046,"up","--","--","--","--","--","--","--","--","Wall-associated receptor kinase 3 [Aegilops tauschii]"]
[null,"c31548.graph_c0",0,0,0,2.06220726492157,0.882278780086648,1.81848152975209,0.00222317395343946,"Inf","up","--","--","--","--","--","--","--","--","Wall-associated receptor kinase 5 [Aegilops tauschii]"]
["Gene function","ID","XH09-21-1_FPKM","XH09-21-2_FPKM","XH09-21-3_FPKM","ZhN03-21-1_FPKM","ZhN03-21-2_FPKM","ZhN03-21-3_FPKM","FDR","log2FC","regulated","COG_class","COG_class_annotation","GO_annotation","KEGG_annotation","KOG_class","KOG_class_annotation","Pfam_annotation","Swissprot_annotation","nr_annotation"]
["Cell wall hydrolysis/modification (39)"]
[null,"c60174.graph_c0",7.11255443539072,7.277418155960105,8.1700236921255,0,0,0,1.35103419138744e-19,{"$error":"#NAME?"},"down","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|2.16577e-148|bdi:100831194|cationic peroxidase SPC4-like; K00430 peroxidase [EC:1.11.1.7] (A)","--","--","Peroxidase","Peroxidase 12 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Peroxidase 12 [Aegilops tauschii]"]
[null,"c69158.graph_c1",11.3638196096666,10.895944279853902,11.5176633780266,36.1405898685934,37.438331890871964,38.3616905942418,0.0001584870601903,1.71995531421753,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: aging (GO:0007568);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: response to auxin (GO:0009733);; Biological Process: response to gibberellin (GO:0009739);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: xyloglucan metabolic process (GO:0010411);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);; Biological Process: cell wall modification (GO:0042545);; Cellular Component: apoplast (GO:0048046);; Biological Process: primary root development (GO:0080022);; Molecular Function: xyloglucan endotransglucosylase activity (GO:0080039);; ","--","--","--","Glycosyl hydrolases family 16","Xyloglucan endotransglucosylase/hydrolase protein 14 (Precursor) GN=F14M19.100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","xyloglucan endotransglycosylase (XET) [Hordeum vulgare subsp. vulgare] "]
[null,"c61657.graph_c0",43.4481540074629,41.60876136590666,43.9302448609411,3.23689242864559,4.294207296041341,5.30858009047668,1.26581358363949e-19,-3.33895418819188,"down","--","--","Molecular Function: sucrose alpha-glucosidase activity (GO:0004575);; Cellular Component: cell wall (GO:0005618);; Cellular Component: vacuole (GO:0005773);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: response to wounding (GO:0009611);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: levanase activity (GO:0031219);; Cellular Component: apoplast (GO:0048046);; Molecular Function: inulinase activity (GO:0051670);; Biological Process: nectar secretion (GO:0071836);; Biological Process: response to karrikin (GO:0080167);; ","K01193|1.10489e-152|bdi:100821731|beta-fructofuranosidase, insoluble isoenzyme 1-like; K01193 beta-fructofuranosidase [EC:3.2.1.26] (A)","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 32 C terminal;; Glycosyl hydrolases family 32 N-terminal domain","Beta-fructofuranosidase, cell wall isozyme (Precursor) OS=Zea mays (Maize) PE=2 SV=1","Beta-fructofuranosidase, insoluble isoenzyme 1 [Aegilops tauschii]"]
[null,"c33065.graph_c0",1.87705803435127,1.799775115661452,1.90246970853778,6.31120082954762,7.455158702471247,8.52456498837016,2.67530547007436e-06,1.98866846808227,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: beta-galactosidase activity (GO:0004565);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: carbohydrate binding (GO:0030246);; Cellular Component: apoplast (GO:0048046);; ","--","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 35;; Galactose binding lectin domain;; Beta-galactosidase jelly roll domain;; Glycosyl hydrolases family 2, sugar binding domain;; Reverse transcriptase-like","Beta-galactosidase 2 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Beta-galactosidase 2 [Triticum urartu]"]
[null,"c72168.graph_c0",18.8050886701005,17.99137767393271,18.9768044451582,0.789955460578563,1.3480294658983984,1.89262317655925,4.34052677576402e-18,-3.80231046757319,"down","--","--","Molecular Function: chitinase activity (GO:0004568);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: response to cold (GO:0009409);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to light intensity (GO:0009642);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular response to water deprivation (GO:0042631);; ","K01183|4.80232e-152|bdi:100841943|acidic endochitinase-like; K01183 chitinase [EC:3.2.1.14] (A)","[M]","Cell wall/membrane/envelope biogenesis ","Glycosyl hydrolases family 18","Acidic endochitinase (Precursor) OS=Phaseolus angularis (Azuki bean) PE=2 SV=1","unnamed protein product [Triticum aestivum] "]
[null,"c65270.graph_c0",19.0773205871998,15.400642143882667,13.2640279149538,0.534260835296408,1.4426106679561546,2.33653439393634,1.82716341865069e-07,-3.48308199464862,"down","[G]","Carbohydrate transport and metabolism ","Molecular Function: sucrose alpha-glucosidase activity (GO:0004575);; Cellular Component: cell wall (GO:0005618);; Cellular Component: vacuole (GO:0005773);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: response to wounding (GO:0009611);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: levanase activity (GO:0031219);; Cellular Component: apoplast (GO:0048046);; Molecular Function: inulinase activity (GO:0051670);; Biological Process: nectar secretion (GO:0071836);; Biological Process: response to karrikin (GO:0080167);; ","K01193|0|bdi:100821731|beta-fructofuranosidase, insoluble isoenzyme 1-like; K01193 beta-fructofuranosidase [EC:3.2.1.26] (A)","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 32 N-terminal domain","Beta-fructofuranosidase, insoluble isoenzyme 1 (Precursor) GN=CIN1 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=2","cell wall invertase [Triticum aestivum]"]
[null,"c43794.graph_c0",3.09414114074837,2.7621798828979807,2.70643661333739,0.655227775082291,0.7988206159081171,0.934425250574862,0.00215388251297405,-1.85228506299159,"down","[G]","Carbohydrate transport and metabolism ","Molecular Function: catalytic activity (GO:0003824);; ","K01183|5.20315e-51|pmum:103320757|chitotriosidase-1-like; K01183 chitinase [EC:3.2.1.14] (A)","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 18;; Chitin binding Peritrophin-A domain","--","unnamed protein product [Blastocystis hominis]"]
[null,"c70119.graph_c0",2.44123277055726,2.5763673732822996,2.96913871333557,6.30403901680925,6.757438422738693,7.14326344444075,0.00632219795790403,1.33065475690795,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: acid-amino acid ligase activity (GO:0016881);; Molecular Function: cation binding (GO:0043169);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","Glycosyl hydrolases family 17;; X8 domain","Glucan endo-1,3-beta-glucosidase 4 (Precursor) GN=At3g13560 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c53977.graph_c0",12.7832162791303,11.789502911414429,11.97473983484,1.68420040196668,1.2754732724115323,0.853991410132269,4.52989954252333e-07,-3.2664695886398,"down","--","--","Molecular Function: polygalacturonase activity (GO:0004650);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","--","--","--","Glycosyl hydrolases family 28","Polygalacturonase At1g48100 (Precursor) GN=At1g48100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","PREDICTED: polygalacturonase At1g48100 [Brachypodium distachyon]"]
[null,"c59790.graph_c0",4.68930574246252,4.459133750799352,4.67487513421612,0.519914357393728,0.34642688678255434,0.169475147303555,5.06992331538617e-08,-3.74253179446539,"down","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: polygalacturonase activity (GO:0004650);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: galacturan 1,4-alpha-galacturonidase activity (GO:0047911);; ","--","--","--","Glycosyl hydrolases family 28;; Pectate lyase superfamily protein;; Right handed beta helix region","Polygalacturonase At1g48100 (Precursor) GN=At1g48100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","PREDICTED: polygalacturonase At1g48100 [Brachypodium distachyon]"]
[null,"c56784.graph_c0",6.30793610965617,6.473790952539509,7.2870248906768,0.655329009473309,0.968011907027879,1.27101468551217,1.0641319785346e-07,-2.80427558779905,"down","[G]","Carbohydrate transport and metabolism ","Molecular Function: sucrose alpha-glucosidase activity (GO:0004575);; Cellular Component: vacuole (GO:0005773);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Molecular Function: transferase activity (GO:0016740);; ","K01193|0|bdi:100839920|sucrose:sucrose 1-fructosyltransferase-like; K01193 beta-fructofuranosidase [EC:3.2.1.26] (A)","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 32 N-terminal domain;; Glycosyl hydrolases family 32 C terminal","Sucrose:sucrose 1-fructosyltransferase (Precursor) GN=1-SST OS=Festuca arundinacea (Tall fescue) PE=1 SV=1","Beta-fructofuranosidase 1 [Aegilops tauschii]"]
[null,"c66785.graph_c0",3.61659614880629,3.6092196579507334,3.96276513289025,13.3159593300145,17.62832811105995,21.7644136109948,0.00536589233242776,2.22586466746268,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: cation binding (GO:0043169);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","Glycosyl hydrolases family 17;; X8 domain","Glucan endo-1,3-beta-glucosidase 13 (Precursor) GN=At5g56590 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c75101.graph_c0",43.5877174798319,41.95886290491119,44.5258946204816,104.412204557935,103.46719294220301,101.487509397049,8.1615273701496e-05,1.24174303423697,"up","--","--","Molecular Function: alpha-mannosidase activity (GO:0004559);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: mannose metabolic process (GO:0006013);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: carbohydrate binding (GO:0030246);; Cellular Component: apoplast (GO:0048046);; ","K01191|0|bdi:100832076|lysosomal alpha-mannosidase-like; K01191 alpha-mannosidase [EC:3.2.1.24] (A)","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 38 C-terminal domain;; Alpha mannosidase, middle domain;; Glycosyl hydrolases family 38 N-terminal domain","Alpha-mannosidase, light subunit {ECO:0000303|PubMed:24221485} OS=Canavalia ensiformis (Jack bean) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c66178.graph_c0",3.63898996050503,3.4593961410949667,3.6257419357944,0.476731543788336,0.7520287416142442,1.01980565202401,0.000306730613514542,-2.26523037235586,"down","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","Glycosyl hydrolases family 17","Glucan endo-1,3-beta-glucosidase 14 (Precursor) GN=At2g27500 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c59299.graph_c0",8.34126465507509,6.969970140538924,6.29567264005665,0.743038293850228,0.7338399589962502,0.71730322455231,1.05793030972309e-10,-3.30888806614725,"down","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor C-terminal;; Xylanase inhibitor N-terminal","Aspartic proteinase nepenthesin-1 (Precursor) GN=nep1 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1","Aspartic proteinase nepenthesin-1 [Aegilops tauschii]"]
[null,"c57438.graph_c0",1.23828408128075,1.3466721731779714,1.58972748239299,4.94510794744196,4.679877670678472,4.3678486172082,0.00830849495907024,1.73777703695269,"up","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease","Aspartic proteinase Asp1 (Precursor) GN=ASP1 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=2","nucellin [Hordeum vulgare subsp. vulgare] "]
[null,"c69728.graph_c0",9.52457247610387,8.396917285111238,8.10895382262973,17.7145971598401,18.13448739509136,18.3730327563917,0.00969538574748786,1.04959877021521,"up","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor N-terminal;; Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease;; Eukaryotic aspartyl protease","Aspartic proteinase-like protein 1 (Precursor) GN=At5g10080 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Aspartic proteinase-like protein 1 [Aegilops tauschii]"]
[null,"c73796.graph_c0",14.9983727548374,12.439547236462477,11.1246764417338,27.1377435507068,26.929608785439395,26.4521779323176,0.00860337296838543,1.05289446752029,"up","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor N-terminal;; Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease","Protein ASPARTIC PROTEASE IN GUARD CELL 1 (Precursor) GN=ASPG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c62869.graph_c0",3.49163102253512,3.3023266159560714,3.44325487097263,0,0,0,1.59896937454984e-09,{"$error":"#NAME?"},"down","--","--","Molecular Function: peptidase activity (GO:0008233);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor C-terminal;; Xylanase inhibitor N-terminal","Aspartic proteinase nepenthesin-1 (Precursor) GN=nep1 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1","Aspartic proteinase nepenthesin-1 [Triticum urartu]"]
[null,"c57488.graph_c0",1.7833072665292,1.5443669132495714,1.4598632512949,0.198805841881914,0.17588729181863919,0.151209868837178,0.00121880774394963,-3.19434604436608,"down","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor C-terminal;; Xylanase inhibitor N-terminal;; Eukaryotic aspartyl protease","Aspartic proteinase nepenthesin-1 (Precursor) GN=nep1 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c66136.graph_c0",10.0235873916134,8.736975426264667,8.3240610035424,2.87411651794964,3.629350648224176,4.34829127201647,0.00663228341973915,-1.33023613026359,"down","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plastid (GO:0009536);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor N-terminal;; Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease","Aspartic proteinase nepenthesin-1 (Precursor) GN=nep1 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare] "]
[null,"c66136.graph_c0",10.0235873916134,8.736975426264667,8.3240610035424,2.87411651794964,3.629350648224176,4.34829127201647,0.00663228341973915,-1.33023613026359,"down","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plastid (GO:0009536);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor N-terminal;; Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease","Aspartic proteinase nepenthesin-1 (Precursor) GN=nep1 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare] "]
[null,"c75931.graph_c0",65.5464542271468,64.97230750911018,70.8953915419846,0.36306688180178,0.2716526883383588,0.177521967991554,2.60830407919437e-74,-7.95941747346072,"down","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor N-terminal;; Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease","Aspartic proteinase nepenthesin-2 (Precursor) GN=nep2 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1","PREDICTED: aspartic proteinase nepenthesin-1-like [Brachypodium distachyon]"]
[null,"c54995.graph_c0",5.97894373546432,5.48977349866948,5.54958061174159,0.0608073276050217,0.48375492844834755,0.90186498000719,3.61943570849158e-10,-3.57240892424094,"down","--","--","--","--","--","--","Xylanase inhibitor C-terminal;; Xylanase inhibitor N-terminal;; Eukaryotic aspartyl protease","Aspartic proteinase nepenthesin-1 (Precursor) GN=nep1 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1","TPA: hypothetical protein ZEAMMB73_214154 [Zea mays]"]
[null,"c61611.graph_c0",35.3331326670183,32.63893691117457,33.2086348464483,1.88229195123722,3.741818507420151,5.56392687852888,5.08422878473758e-18,-3.1896173115789,"down","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Cellular Component: vacuole (GO:0005773);; Biological Process: proteolysis (GO:0006508);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K08245|4.65167e-151|osa:4327861|Os01g0663400; K08245 phytepsin [EC:3.4.23.40] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Eukaryotic aspartyl protease;; Saposin-like type B, region 1;; Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease;; Saposin-like type B, region 2","Aspartic proteinase oryzasin-1 (Precursor) GN=OJ1781_H11.11 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","Aspartic proteinase oryzasin-1 [Triticum urartu]"]
[null,"c66696.graph_c0",60.6090566180344,58.40543075897109,62.0423479758049,156.76541495773,139.51659241500303,120.872603948126,0.000444835434518927,1.19683372288203,"up","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Biological Process: xylan catabolic process (GO:0045493);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor C-terminal;; Xylanase inhibitor N-terminal","Basic 7S globulin low kDa subunit (Precursor) GN=BG OS=Glycine max (Soybean) PE=1 SV=2","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c59797.graph_c1",20.2578432446772,18.631034961325383,18.8673301741061,4.58457024489715,3.820176015160608,3.01758002527246,5.33707232714378e-06,-2.3450810543699,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor C-terminal;; Xylanase inhibitor N-terminal;; Eukaryotic aspartyl protease","Aspartic proteinase nepenthesin-1 (Precursor) GN=nep1 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1","Aspartic proteinase nepenthesin-1 [Triticum urartu]"]
[null,"c52659.graph_c0",0.217884219602246,0.5243904729993394,0.883335773696367,3.36822283590863,4.347746484629075,5.28379266850323,0.00507445189608757,2.99285877270946,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor N-terminal;; Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease","Protein ASPARTIC PROTEASE IN GUARD CELL 2 (Precursor) GN=ASPG2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Zea mays] "]
[null,"c8331.graph_c0",1.45058795316835,1.449206120377495,1.59274489962439,0,0,0,0.000837044133374046,{"$error":"#NAME?"},"down","--","--","Biological Process: fatty acid alpha-oxidation (GO:0001561);; Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: cell death (GO:0008219);; Molecular Function: linoleate 13S-lipoxygenase activity (GO:0016165);; Molecular Function: heme binding (GO:0020037);; ","K10529|6.17624e-134|osa:4352160|Os12g0448900; K10529 alpha-dioxygenase [EC:1.-.-.-] (A)","[R]","General function prediction only ","Animal haem peroxidase","Alpha-dioxygenase 1 (Precursor) GN=T13O15.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Peroxidasin-like protein [Triticum urartu]"]
[null,"c30458.graph_c0",2.49723013188105,3.063999958679428,3.93716978134575,0.335105168377153,0.5910563433927397,0.841096954974399,0.00329441576377633,-2.43679604206502,"down","--","--","Molecular Function: N,N-dimethylaniline monooxygenase activity (GO:0004499);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuole (GO:0005773);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: L-ascorbate peroxidase activity (GO:0016688);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Molecular Function: NADP binding (GO:0050661);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00485|0|obr:102713268|probable flavin-containing monooxygenase 1-like; K00485 dimethylaniline monooxygenase (N-oxide forming) [EC:1.14.13.8] (A)","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Flavin-binding monooxygenase-like","Probable flavin-containing monooxygenase 1 GN=FMO1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","hypothetical protein F775_05652 [Aegilops tauschii]"]
[null,"c74833.graph_c2",14.413448616863,13.615410910294571,14.1789142947556,32.4054014551332,30.649518527806983,28.5871404152027,0.000794309676264773,1.11052466662245,"up","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Tetratricopeptide repeat;; Mitochondrial 28S ribosomal protein S27;; Peroxidase","Pentatricopeptide repeat-containing protein At3g54980, mitochondrial (Precursor) GN=At3g54980 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","unnamed protein product [Triticum aestivum]"]
[null,"c57337.graph_c0",44.6338571521529,41.634992080420325,42.7996262167298,16.9931175004771,17.913937012416834,18.6556171542324,0.000340705669527636,-1.2777915655085,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: mitochondrial matrix (GO:0005759);; Biological Process: glycolysis (GO:0006096);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: biosynthetic process (GO:0009058);; Biological Process: aerobic respiration (GO:0009060);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: peroxiredoxin activity (GO:0051920);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Redoxin;; AhpC/TSA family","Peroxiredoxin-2F, mitochondrial (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","PREDICTED: peroxiredoxin-2F, mitochondrial [Brachypodium distachyon]"]
[null,"c66206.graph_c0",44.3321220032746,43.912252619489905,47.8836084976542,14.8133899087151,18.602872035065477,22.2063254410652,8.38373354309807e-05,-1.3010746580979,"down","[P]","Inorganic ion transport and metabolism ","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: peroxisomal membrane (GO:0005778);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: L-ascorbate peroxidase activity (GO:0016688);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00434|7.04427e-157|osa:4346247|Os08g0549100; K00434 L-ascorbate peroxidase [EC:1.11.1.11] (A)","--","--","Peroxidase","Probable L-ascorbate peroxidase 4 GN=OJ1479_B11.9 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","peroxisome type ascorbate peroxidase [Hordeum vulgare subsp. vulgare] "]
[null,"c60174.graph_c0",7.11255443539072,7.277418155960105,8.1700236921255,0,0,0,1.35103419138744e-19,{"$error":"#NAME?"},"down","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|2.16577e-148|bdi:100831194|cationic peroxidase SPC4-like; K00430 peroxidase [EC:1.11.1.7] (A)","--","--","Peroxidase","Peroxidase 12 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Peroxidase 12 [Aegilops tauschii]"]
[null,"c24903.graph_c0",12.1162674009298,12.40903030001176,13.9426962290949,0.869035153376838,0.6565067383292804,0.43741325589843,4.59159762099008e-29,-4.29785344902324,"down","--","--","--","--","[R]","General function prediction only ","Animal haem peroxidase","Alpha-dioxygenase 2 (Precursor) GN=F25P22.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Animal heme peroxidase homologue [Chondrus crispus] "]
[null,"c42202.graph_c0",20.3108973173237,20.760261935619095,23.2856527474764,71.4179378387767,62.26262622889447,52.4846883567233,0.000555205121080283,1.5256523669147,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: cell wall (GO:0005618);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|4.58567e-33|bdi:100840082|cationic peroxidase SPC4-like; K00430 peroxidase [EC:1.11.1.7] (A)","--","--","--","Peroxidase 65 (Precursor) GN=MQD22.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c50063.graph_c0",13.2452659265142,12.608603323282237,13.2328010523785,0.457043678760676,1.5398077230310683,2.60717369007115,8.56062139054076e-11,-3.09994862794827,"down","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|3.23399e-128|bdi:100839477|peroxidase 12-like; K00430 peroxidase [EC:1.11.1.7] (A)","--","--","Peroxidase","Peroxidase 2 (Fragment) OS=Hordeum vulgare (Barley) PE=2 SV=1","Peroxidase 12 [Triticum urartu]"]
[null,"c61632.graph_c0",31.5078179152632,30.640441973528,32.8371102291456,5.7011545866268,6.256768800189226,6.74981532574976,8.22754067842232e-10,-2.3530804702504,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: intracellular (GO:0005622);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","Peroxidase 1 (Precursor) GN=PER1 OS=Zea mays (Maize) PE=1 SV=1","putative zinc finger protein [Triticum aestivum]"]
[null,"c69356.graph_c0",3.13726743396888,3.1027338288143715,3.3784736065413,0.324765449912238,0.41145356450884074,0.494027143460355,4.86294866102741e-09,-2.97678193023572,"down","--","--","--","--","[R]","General function prediction only ","Animal haem peroxidase","--","Animal heme peroxidase homologue [Chondrus crispus] "]
["Hydrolase activity (58)"]
[null,"c59790.graph_c0",4.645306724,4.68930574246252,4.67487513421612,0.519914357393728,0.169475147303555,0.334578457,5.06992331538617e-08,-3.74253179446539,"down","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: polygalacturonase activity (GO:0004650);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: galacturan 1,4-alpha-galacturonidase activity (GO:0047911);; ","--","--","--","Glycosyl hydrolases family 28;; Pectate lyase superfamily protein;; Right handed beta helix region","Polygalacturonase At1g48100 (Precursor) GN=At1g48100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","PREDICTED: polygalacturonase At1g48100 [Brachypodium distachyon]"]
[null,"c72047.graph_c1",66.3343056478988,64.0395973462508,68.1488487792279,10.6713388475072,14.450008408441558,18.0841778852915,4.56689499420722e-13,-2.2105025304518,"down","[I]","Lipid transport and metabolism ","Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[V]","Defense mechanisms ","alpha/beta hydrolase fold;; Alpha/beta hydrolase family;; Carboxylesterase family","Probable carboxylesterase 15 GN=CXE15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c30667.graph_c0",1.44093784004208,1.3816110212165,1.46044530451257,0,0,0,1.0692414124043e-07,{"$error":"#NAME?"},"down","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: nucleobase-containing compound metabolic process (GO:0006139);; Cellular Component: membrane (GO:0016020);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","Reverse transcriptase-like;; zinc-binding in reverse transcriptase","Putative ribonuclease H protein At1g65750 GN=At1g65750 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] "]
[null,"c54680.graph_c1",14.9394950887192,15.627477030996666,17.8782066763738,1.21733728364033,1.2099367858548393,1.1904369202108,1.90603921292343e-10,-3.75100722770199,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; ","K16292|7.15535e-16|osa:4346292|Os08g0556900; K16292 KDEL-tailed cysteine endopeptidase [EC:3.4.22.-] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Cathepsin propeptide inhibitor domain (I29)","Cysteine proteinase EP-B 2 (Precursor) GN=EPB2 OS=Hordeum vulgare (Barley) PE=1 SV=1","Os08g0556900 [Oryza sativa Japonica Group] "]
[null,"c23571.graph_c0",8.82109240028503,9.767872385884251,11.6914396100719,1.74824706269365,1.7555170090819046,1.74523178537934,0.000354245225951392,-2.53585141315489,"down","[R]","General function prediction only ","Cellular Component: cell wall (GO:0005618);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","--","hypothetical protein F775_31114 [Aegilops tauschii]"]
[null,"c51764.graph_c0",0.308850440700677,0.2961343375972181,0.313031668253481,6.86327052229647,5.672884924443734,4.42577047734656,0.000482532579634883,4.201013350383,"up","--","--","Biological Process: metabolic process (GO:0008152);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[V]","Defense mechanisms ","--","Tuliposide A-converting enzyme b2, amyloplastic (Precursor) GN=TCEA-B2 OS=Tulipa gesneriana (Garden tulip) PE=1 SV=1","putative carboxylesterase 7 [Triticum urartu]"]
[null,"c51764.graph_c0",0.308850440700677,0.2961343375972181,0.313031668253481,6.86327052229647,5.672884924443734,4.42577047734656,0.000482532579634883,4.201013350383,"up","--","--","Biological Process: metabolic process (GO:0008152);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[V]","Defense mechanisms ","--","Tuliposide A-converting enzyme b2, amyloplastic (Precursor) GN=TCEA-B2 OS=Tulipa gesneriana (Garden tulip) PE=1 SV=1","putative carboxylesterase 7 [Triticum urartu]"]
[null,"c61180.graph_c0",18.5569642175146,17.55723852005195,18.3132366745945,5.36697775212105,5.199100459477201,4.97923216223858,1.94496142633932e-06,-1.81602851264272,"down","--","--","Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","GDSL-like Lipase/Acylhydrolase","GDSL esterase/lipase At5g33370 (Precursor) GN=At5g33370 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","GDSL esterase/lipase [Aegilops tauschii]"]
[null,"c69158.graph_c1",11.3638196096666,10.895944279853902,11.5176633780266,36.1405898685934,37.438331890871964,38.3616905942418,0.0001584870601903,1.71995531421753,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: aging (GO:0007568);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: response to auxin (GO:0009733);; Biological Process: response to gibberellin (GO:0009739);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: xyloglucan metabolic process (GO:0010411);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);; Biological Process: cell wall modification (GO:0042545);; Cellular Component: apoplast (GO:0048046);; Biological Process: primary root development (GO:0080022);; Molecular Function: xyloglucan endotransglucosylase activity (GO:0080039);; ","--","--","--","Glycosyl hydrolases family 16","Xyloglucan endotransglucosylase/hydrolase protein 14 (Precursor) GN=F14M19.100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","xyloglucan endotransglycosylase (XET) [Hordeum vulgare subsp. vulgare] "]
[null,"c54179.graph_c0",4.63509677346261,3.755929665444762,3.25235552397139,0.688970307060126,0.8893319642037267,1.08080030170529,0.00258380516013795,-2.14183705260822,"down","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: metabolic process (GO:0008152);; Molecular Function: galactinol-raffinose galactosyltransferase activity (GO:0047268);; Biological Process: response to karrikin (GO:0080167);; ","K06611|0|sita:101754435|stachyose synthase-like; K06611 stachyose synthetase [EC:2.4.1.67] (A)","--","--","Raffinose synthase or seed imbibition protein Sip1","Stachyose synthase (Precursor) GN=STS1 OS=Pisum sativum (Garden pea) PE=1 SV=1","PREDICTED: stachyose synthase-like [Setaria italica]"]
[null,"c56946.graph_c0",14.9554499470621,15.337102785546573,17.2524659025857,7.3561382294644,7.010179546221427,6.59411906751624,0.00428997096769518,-1.18918193143404,"down","[R]","General function prediction only ","Cellular Component: cell wall (GO:0005618);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","Putative cyclase","--","PREDICTED: uncharacterized protein LOC100829303 [Brachypodium distachyon]"]
[null,"c63597.graph_c0",19.984529852927,19.258494845193905,20.4583093219802,6.90973801116428,7.285558534871407,7.58852347322982,0.000174524655185865,-1.46326277826563,"down","[R]","General function prediction only ","Biological Process: maltose metabolic process (GO:0000023);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: positive regulation of catalytic activity (GO:0043085);; ","--","[R]","General function prediction only ","Alpha/beta hydrolase family;; Alpha/beta hydrolase family;; alpha/beta hydrolase fold;; Serine hydrolase","Pheophytinase, chloroplastic (Precursor) GN=MAC12.25 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare] "]
[null,"c66202.graph_c0",19.2681115306673,17.072718351018,16.5845970064705,5.78538440090168,6.9136795173240655,7.97283783857321,0.000477986922536028,-1.36650002681275,"down","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: metabolic process (GO:0008152);; Biological Process: response to cold (GO:0009409);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to sucrose (GO:0009744);; Biological Process: response to fructose (GO:0009750);; Molecular Function: galactinol-sucrose galactosyltransferase activity (GO:0047274);; Biological Process: response to karrikin (GO:0080167);; ","K06617|0|bdi:100839679|probable galactinol--sucrose galactosyltransferase 6; K06617 raffinose synthase [EC:2.4.1.82] (A)","--","--","Raffinose synthase or seed imbibition protein Sip1;; Raffinose synthase or seed imbibition protein Sip1","Probable galactinol--sucrose galactosyltransferase 6 GN=F5O24.140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c54179.graph_c1",7.06385697288493,6.580949169906095,6.75613628391787,0.480627491824799,1.013056681808271,1.53535530497366,3.44555854204498e-06,-2.76459986161733,"down","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: metabolic process (GO:0008152);; Molecular Function: galactinol-raffinose galactosyltransferase activity (GO:0047268);; Biological Process: response to karrikin (GO:0080167);; ","K06611|6.33836e-130|sita:101754435|stachyose synthase-like; K06611 stachyose synthetase [EC:2.4.1.67] (A)","--","--","Raffinose synthase or seed imbibition protein Sip1","Stachyose synthase (Precursor) GN=STS1 OS=Pisum sativum (Garden pea) PE=1 SV=1","PREDICTED: stachyose synthase-like [Setaria italica]"]
[null,"c70829.graph_c0",5.66371238304257,5.716892506894434,6.34176188143574,15.0092653423842,13.51800771506603,11.8915700105972,0.00550189713767765,1.1823142822796,"up","[R]","General function prediction only ","Biological Process: proteolysis (GO:0006508);; Molecular Function: metallopeptidase activity (GO:0008237);; Biological Process: auxin metabolic process (GO:0009850);; Molecular Function: IAA-amino acid conjugate hydrolase activity (GO:0010178);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K14664|0|bdi:100822398|IAA-amino acid hydrolase ILR1-like 5; K14664 IAA-amino acid hydrolase [EC:3.5.1.-] (A)","--","--","Peptidase family M20/M25/M40;; Peptidase dimerisation domain","IAA-amino acid hydrolase ILR1-like 5 (Precursor) GN=OSJNBa0019D11.19 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c66806.graph_c0",23.8802860468169,21.395855856663996,21.0510112521775,9.69432607779668,8.37296597635193,6.96787621514366,0.00104393526398988,-1.41312227949071,"down","[L]","Replication, recombination and repair ","Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","Staphylococcal nuclease homologue","Probable staphylococcal-like nuclease CAN3 GN=OSJNBa0024J08 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","putative 38.1 kDa protein [Triticum urartu]"]
[null,"c72047.graph_c1",66.3343056478988,64.0395973462508,68.1488487792279,10.6713388475072,14.450008408441558,18.0841778852915,4.56689499420722e-13,-2.2105025304518,"down","[I]","Lipid transport and metabolism ","Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[V]","Defense mechanisms ","alpha/beta hydrolase fold;; Alpha/beta hydrolase family;; Carboxylesterase family","Probable carboxylesterase 15 GN=CXE15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c59126.graph_c0",15.3209233076494,14.690124659675096,15.5283384776683,1.11020008942926,1.1943778076517086,1.26661174779764,3.95288982593913e-06,-3.68158180344337,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: carboxylic ester hydrolase activity (GO:0004091);; Cellular Component: mitochondrion (GO:0005739);; ","K03869|1.81245e-31|pop:POPTR_0008s14780g|POPTRDRAFT_832803; cullin family protein; K03869 cullin 3 (A)","[D]","Cell cycle control, cell division, chromosome partitioning ","Cullin family","Cullin-3A GN=T2P11.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","H0423H10.13 [Oryza sativa Indica Group] "]
[null,"c61301.graph_c0",21.0139932689224,18.565267249672477,17.9730679553898,4.45310952096389,6.4350653695384725,8.35267056441767,6.05671065535308e-05,-1.5921323674869,"down","[R]","General function prediction only ","Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: cytokinin biosynthetic process (GO:0009691);; Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds (GO:0016799);; Molecular Function: lyase activity (GO:0016829);; ","--","--","--","Possible lysine decarboxylase","Probable cytokinin riboside 5&apos;-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","hypothetical protein F775_05789 [Aegilops tauschii]"]
[null,"c70119.graph_c0",2.44123277055726,2.5763673732822996,2.96913871333557,6.30403901680925,6.757438422738693,7.14326344444075,0.00632219795790403,1.33065475690795,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: acid-amino acid ligase activity (GO:0016881);; Molecular Function: cation binding (GO:0043169);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","Glycosyl hydrolases family 17;; X8 domain","Glucan endo-1,3-beta-glucosidase 4 (Precursor) GN=At3g13560 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c68901.graph_c0",433.080089352195,398.45220487811423,403.669540891845,78.9268301986267,77.32727662672944,74.9544502885649,5.45471452016641e-15,-2.42592423408695,"down","[R]","General function prediction only ","Cellular Component: plastid (GO:0009536);; Biological Process: response to wounding (GO:0009611);; Biological Process: coumarin biosynthetic process (GO:0009805);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: proline transport (GO:0015824);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: strigolactone biosynthetic process (GO:1901601);; ","--","--","--","Alpha/beta hydrolase family;; Alpha/beta hydrolase family;; alpha/beta hydrolase fold;; Alpha/beta hydrolase family","Probable strigolactone esterase D14 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","hypothetical protein F775_07019 [Aegilops tauschii]"]
[null,"c74977.graph_c0",14.4911955530392,13.789385985448808,14.4665150164033,26.5282238111676,31.79869642515045,36.7511820748818,0.00856485592241765,1.1435072295236,"up","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","Cytochrome P450 76C1 GN=CYP76C1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c42017.graph_c0",7.14627958005301,7.0245033517269,7.60517745857348,28.9990886250576,24.76539332749472,20.2840440966569,0.00109754402564154,1.75893905693927,"up","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","[OW]","--","--","--","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c70428.graph_c0",89.359022184337,86.67471094037514,92.6578707904508,729.69993375448,592.6119470224538,449.597840820203,0.00100973040058951,2.7149065224636,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; Biological Process: single-organism metabolic process (GO:0044710);; Biological Process: seed development (GO:0048316);; ","K17725|6.50041e-21|bdi:100826131|persulfide dioxygenase ETHE1 homolog, mitochondrial; K17725 sulfur dioxygenase [EC:1.13.11.18] (A)","[R]","General function prediction only ","--","Persulfide dioxygenase ETHE1 homolog, mitochondrial (Precursor) GN=GLY3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3","unnamed protein product [Triticum aestivum]"]
[null,"c74449.graph_c0",9.18354674433772,8.965494437712929,9.64399157485943,18.8795555291403,19.364311524452816,19.6554244045208,0.00333990398344467,1.05036361681706,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","--","--","--","Carbohydrate binding domain;; Glycosyl hydrolase family 10","Putative Pol polyprotein from transposon element Bs1 OS=Zea mays (Maize) PE=3 SV=1","PREDICTED: uncharacterized protein LOC100841920 isoform X1 [Brachypodium distachyon] "]
[null,"c60891.graph_c0",60.9088594641078,58.66059092101862,62.2783814700313,6.01100867609967,6.679502526062457,7.28120135076462,1.34256224534206e-22,-3.19586384734586,"down","[R]","General function prediction only ","Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: metabolic process (GO:0008152);; Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","Haloacid dehalogenase-like hydrolase;; haloacid dehalogenase-like hydrolase;; HAD-hyrolase-like","Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp GN=SGPP OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c74568.graph_c2",23.147850821506,21.895343039139238,22.8323695606864,54.5978693064224,48.13633382526031,41.1934350058456,0.00444817416712373,1.07704812764842,"up","--","--","Biological Process: cellular process (GO:0009987);; Cellular Component: membrane (GO:0016020);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: organic substance metabolic process (GO:0071704);; Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","--","[R]","General function prediction only ","--","--","ER degradation-enhancing alpha-mannosidase-like protein 1 [Aegilops tauschii]"]
[null,"c63330.graph_c0",22.687230204702,21.720261296821572,22.9253185186233,4.27863911273549,5.3200808656725584,6.3083218099529,1.2419057350312e-08,-2.09163530278012,"down","--","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; Cellular Component: apoplast (GO:0048046);; ","--","--","--","GDSL-like Lipase/Acylhydrolase","GDSL esterase/lipase APG (Precursor) GN=APG OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","PREDICTED: GDSL esterase/lipase APG-like [Brachypodium distachyon]"]
[null,"c67377.graph_c0",11.6413760377831,12.534789576904714,14.6816820737168,5.43207342738713,5.550837936303356,5.61409406585655,0.00684328442227927,-1.23515554019957,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: plastid (GO:0009536);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Patatin-like phospholipase","--","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c57076.graph_c0",4.30718223034815,4.512783334096976,5.1696627712555,0.547563776570161,0.7774353458321447,0.999532561635807,0.000360167780744227,-2.59964158559161,"down","[R]","General function prediction only ","Cellular Component: mitochondrion (GO:0005739);; Biological Process: mRNA modification (GO:0016556);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","Alpha/beta hydrolase family;; alpha/beta hydrolase fold","--","hypothetical protein F775_06870 [Aegilops tauschii]"]
[null,"c30667.graph_c0",1.44093784004208,1.3816110212165,1.46044530451257,0,0,0,1.0692414124043e-07,{"$error":"#NAME?"},"down","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: nucleobase-containing compound metabolic process (GO:0006139);; Cellular Component: membrane (GO:0016020);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","Reverse transcriptase-like;; zinc-binding in reverse transcriptase","Putative ribonuclease H protein At1g65750 GN=At1g65750 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] "]
[null,"c33399.graph_c0",2.33757383011545,2.1045788728112,2.08204180278807,0,0,0,2.34156416696237e-08,{"$error":"#NAME?"},"down","[IR]","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","GDSL-like Lipase/Acylhydrolase;; GDSL-like Lipase/Acylhydrolase","GDSL esterase/lipase At1g71691 (Precursor) GN=At1g71691 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","hypothetical protein OsI_27577 [Oryza sativa Indica Group]"]
[null,"c59805.graph_c0",0.0477523970823479,0.04578631795563909,0.0483988706244942,3.09118527470001,2.63784372998497,2.15812374797008,2.38092294127921e-10,5.78923898019445,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","Plant mobile domain;; Plant mobile domain","Serine/threonine-protein phosphatase 7 long form homolog GN=At1g48120 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Serine/threonine-protein phosphatase 7 long form-like protein [Triticum urartu]"]
[null,"c59805.graph_c0",0.0477523970823479,0.04578631795563909,0.0483988706244942,3.09118527470001,2.63784372998497,2.15812374797008,2.38092294127921e-10,5.78923898019445,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","Plant mobile domain;; Plant mobile domain","Serine/threonine-protein phosphatase 7 long form homolog GN=At1g48120 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Serine/threonine-protein phosphatase 7 long form-like protein [Triticum urartu]"]
[null,"c25140.graph_c0",6.10871424243041,5.457435556802142,5.35190042685409,0,0.057351136906085426,0.11412876244311,7.00014277160795e-12,-6.64149037567285,"down","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; ","--","--","--","Domain of unknown function (DUF3357)","--","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c69776.graph_c0",303.631138983372,271.86918927597856,267.294158496183,61.5170717817321,72.79870828186607,83.3523576991814,2.05712570619347e-11,-1.96312418286089,"down","--","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","GDSL-like Lipase/Acylhydrolase","GDSL esterase/lipase At5g45910 (Precursor) GN=At5g45910 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare] "]
[null,"c72589.graph_c0",57.2763142279405,54.556255961943855,57.2918232921416,10.47069845054,9.85511091605585,9.14097227241114,6.23855083258466e-18,-2.52880608341197,"down","[I]","Lipid transport and metabolism ","Cellular Component: Golgi membrane (GO:0000139);; Molecular Function: carboxylic ester hydrolase activity (GO:0004091);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Biological Process: metabolic process (GO:0008152);; Cellular Component: plastid (GO:0009536);; Molecular Function: prenylcysteine methylesterase activity (GO:0010296);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K15889|2.00206e-105|bdi:100835212|probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2; K15889 prenylcysteine alpha-carboxyl methylesterase [EC:3.1.1.-] (A)","[R]","General function prediction only ","Carboxylesterase family;; Prolyl oligopeptidase family","Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","unnamed protein product [Triticum aestivum]"]
[null,"c58500.graph_c0",7.63594451041755,8.0775321665185,9.3268730392713,0.0945852066519407,0.26443666425998835,0.431643755225436,1.34929603773128e-13,-4.9981648801341,"down","[R]","General function prediction only ","Cellular Component: plastid (GO:0009536);; Biological Process: cytokinin biosynthetic process (GO:0009691);; Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds (GO:0016799);; ","K06966|7.97993e-73|sita:101758636|probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL5-like (A)","--","--","Possible lysine decarboxylase","Probable cytokinin riboside 5&apos;-monophosphate phosphoribohydrolase LOGL5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","hypothetical protein TRIUR3_33975 [Triticum urartu]"]
[null,"c65085.graph_c0",80.252591423476,73.95715010212206,75.0574237909803,29.863612970842,31.511751899006683,32.8447733081813,7.57635349844911e-05,-1.29196073508543,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Molecular Function: hydrolase activity (GO:0016787);; ","K07766|2.17326e-53|bdi:100841819|nudix hydrolase 18, mitochondrial-like; K07766 diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] (A)","[T]","Signal transduction mechanisms ","NUDIX domain","Nudix hydrolase 21, chloroplastic (Precursor) GN=T9L24.30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c67089.graph_c0",30.2881732821354,28.501151351834093,29.5642445567162,4.09227487145558,5.110828566296332,6.07827397547412,2.26598764070788e-12,-2.54164008462745,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: chloroplast stroma (GO:0009570);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","GDSL-like Lipase/Acylhydrolase","GDSL esterase/lipase At1g09390 (Precursor) GN=At1g09390 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c28561.graph_c0",3.81648125338685,3.5783817304067713,3.69812038046737,0.567289614337619,1.1910751310221352,1.80294989639643,0.0022444669256485,-1.65200679720344,"down","[G]","Carbohydrate transport and metabolism ","Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Molecular Function: hydrolase activity (GO:0016787);; ","K00700|0|smo:SELMODRAFT_437348|hypothetical protein; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] (A)","[G]","Carbohydrate transport and metabolism ","Alpha amylase, C-terminal all-beta domain;; Alpha amylase, catalytic domain;; Carbohydrate-binding module 48 (Isoamylase N-terminal domain)","1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic (Precursor) GN=F17C15.70 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","glycoside hydrolase family 13 protein [Schizophyllum commune H4-8] "]
[null,"c54680.graph_c1",14.9394950887192,15.627477030996666,17.8782066763738,1.21733728364033,1.2099367858548393,1.1904369202108,1.90603921292343e-10,-3.75100722770199,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; ","K16292|7.15535e-16|osa:4346292|Os08g0556900; K16292 KDEL-tailed cysteine endopeptidase [EC:3.4.22.-] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Cathepsin propeptide inhibitor domain (I29)","Cysteine proteinase EP-B 2 (Precursor) GN=EPB2 OS=Hordeum vulgare (Barley) PE=1 SV=1","Os08g0556900 [Oryza sativa Japonica Group] "]
[null,"c53951.graph_c0",0.210640025662153,0.25279882937137904,0.320237516017743,3.45975126149453,3.022015113629523,2.55405881462822,9.31256273025121e-05,3.52138615787193,"up","--","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","GDSL-like Lipase/Acylhydrolase","GDSL esterase/lipase At1g28640 (Precursor) GN=At1g28640 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c76600.graph_c0",6.64467401953551,6.194890119422586,6.36459523125192,2.75138870739448,2.676882201859759,2.57560687430644,0.00691130229338728,-1.27094954597668,"down","[F]","Nucleotide transport and metabolism ","Biological Process: cellular process (GO:0009987);; Molecular Function: hydrolase activity (GO:0016787);; Cellular Component: cell part (GO:0044464);; ","K01464|5.94323e-119|smo:SELMODRAFT_83918|hypothetical protein; K01464 dihydropyrimidinase [EC:3.5.2.2] (A)","[F]","Nucleotide transport and metabolism ","Amidohydrolase family;; Amidohydrolase;; Amidohydrolase family;; Amidohydrolase","Allantoinase GN=ALN OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","hypothetical protein SELMODRAFT_83918 [Selaginella moellendorffii] "]
[null,"c73394.graph_c0",11.8914800082676,11.23140628185519,11.6944731836283,1.93383098127103,2.2108915202564274,2.46584314403926,3.96477239252003e-06,-2.40645128561726,"down","[I]","Lipid transport and metabolism ","Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[V]","Defense mechanisms ","alpha/beta hydrolase fold","Probable carboxylesterase 15 GN=CXE15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c63628.graph_c0",52.470031573854,53.65945000190737,60.2148134301515,22.9335186059075,22.596385646017993,22.0332888296683,0.000492060796088763,-1.30772042681829,"down","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[V]","Defense mechanisms ","alpha/beta hydrolase fold;; Carboxylesterase family;; Alpha/beta hydrolase family;; Protein of unknown function (DUF2424)","Probable carboxylesterase 2 GN=CXE2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","unnamed protein product [Triticum aestivum]"]
[null,"c26190.graph_c0",3.34996021330806,3.5924615528707187,4.19420904772045,0,0.05457641008799497,0.10860705607511,9.28943511799214e-09,-6.10869768910039,"down","[R]","General function prediction only ","Biological Process: metabolic process (GO:0008152);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; ","K14664|8.38359e-151|sita:101758046|IAA-amino acid hydrolase ILR1-like 8-like; K14664 IAA-amino acid hydrolase [EC:3.5.1.-] (A)","--","--","Peptidase family M20/M25/M40;; Peptidase dimerisation domain","IAA-amino acid hydrolase ILR1-like 8 (Precursor) GN=P0021G06.115 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","IAA-amino acid hydrolase ILR1-like protein 8 [Aegilops tauschii]"]
[null,"c66898.graph_c0",2.35217229612474,2.4918373316333766,2.88068610030535,6.15497511582916,6.567370558401282,6.91409229538939,0.00855990705685364,1.33767916666261,"up","--","--","Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: phosphoric diester hydrolase activity (GO:0008081);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","--","PI-PLC X domain-containing protein At5g67130 (Precursor) GN=At5g67130 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","PI-PLC X domain-containing protein [Aegilops tauschii]"]
[null,"c24064.graph_c0",7.79818720259152,8.065194722434795,9.13872171452155,1.76587516052735,2.439710533817256,3.08914880176899,0.00290513081306503,-1.7873288704389,"down","--","--","Molecular Function: carboxylic ester hydrolase activity (GO:0004091);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; Biological Process: pollen tube growth (GO:0009860);; ","--","[V]","Defense mechanisms ","alpha/beta hydrolase fold","Probable carboxylesterase 18 GN=CXE18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c47565.graph_c0",0.301246187714752,0.14345056557845332,0,4.65689663319145,3.8419359298008042,2.98855586711215,0.0030898143478187,4.67834610912544,"up","--","--","Biological Process: metabolic process (GO:0008152);; Cellular Component: plastid (GO:0009536);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: response to arsenic-containing substance (GO:0046685);; ","--","--","--","--","--","zn-dependent hydrolase [Oryza sativa Indica Group]"]
[null,"c66785.graph_c0",3.61659614880629,3.6092196579507334,3.96276513289025,13.3159593300145,17.62832811105995,21.7644136109948,0.00536589233242776,2.22586466746268,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: cation binding (GO:0043169);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","Glycosyl hydrolases family 17;; X8 domain","Glucan endo-1,3-beta-glucosidase 13 (Precursor) GN=At5g56590 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c58967.graph_c0",264.69746311081,244.12710385696528,247.969454988817,118.59405190383,120.27821644687789,120.759598825457,0.00108744652473793,-1.08209587136518,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastid (GO:0009536);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","--","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c61056.graph_c0",21.8880176333827,21.604940845370717,23.4823581418958,6.41177822537579,6.639972548077718,6.80176714529887,3.73671124480022e-05,-1.76270569403793,"down","--","--","Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","Zn-finger in Ran binding protein and others","--","hypothetical protein TRIUR3_06621 [Triticum urartu]"]
[null,"c59456.graph_c0",8.17378149579437,7.780890855905856,8.16608930160793,1.12818426899096,2.377963457048543,3.60396301053564,0.00261366305663858,-1.77509477952024,"down","[R]","General function prediction only ","Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; ","--","[R]","General function prediction only ","Haloacid dehalogenase-like hydrolase;; haloacid dehalogenase-like hydrolase;; HAD-hyrolase-like","Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 (Precursor) GN=At4g39970 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare] "]
[null,"c95629.graph_c0",1.75277900539223,1.5866178061425191,1.57911838750706,0,0.0539385032429206,0.107337621453412,0.00035176091387426,-4.94764346927956,"down","[R]","General function prediction only ","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: cytokinin biosynthetic process (GO:0009691);; Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds (GO:0016799);; Molecular Function: lyase activity (GO:0016829);; ","K06966|1.8818e-128|bdi:100822508|cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like; K06966 (A)","--","--","Possible lysine decarboxylase","Probable cytokinin riboside 5&apos;-monophosphate phosphoribohydrolase LOGL6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","PREDICTED: cytokinin riboside 5&apos;-monophosphate phosphoribohydrolase LOG1-like [Brachypodium distachyon]"]
[null,"c42031.graph_c0",4.76368764867682,4.344028574086086,4.35877235690396,13.8076442192843,12.472423024509547,11.0124775994897,0.000846094217332333,1.46172807729863,"up","[R]","General function prediction only ","Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","Alpha/beta hydrolase family;; Alpha/beta hydrolase family;; alpha/beta hydrolase fold","--","PREDICTED: uncharacterized protein LOC100831309 [Brachypodium distachyon]"]
[null,"c66178.graph_c0",3.63898996050503,3.4593961410949667,3.6257419357944,0.476731543788336,0.7520287416142442,1.01980565202401,0.000306730613514542,-2.26523037235586,"down","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","Glycosyl hydrolases family 17","Glucan endo-1,3-beta-glucosidase 14 (Precursor) GN=At2g27500 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c27685.graph_c0",5.76946000785097,5.717554746390176,6.2374049595684,0,0,0,0.000126427139082008,{"$error":"#NAME?"},"down","--","--","Molecular Function: phospholipase activity (GO:0004620);; Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: phosphoric diester hydrolase activity (GO:0008081);; Molecular Function: ion binding (GO:0043167);; Biological Process: response to stimulus (GO:0050896);; ","K01115|2.19156e-07|mus:103993201|phospholipase D gamma 1-like; K01115 phospholipase D1/2 [EC:3.1.4.4] (A)","[I]","Lipid transport and metabolism ","--","Phospholipase D gamma 1 GN=PLDGAMMA1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","hypothetical protein OsJ_32215 [Oryza sativa Japonica Group]"]
["Phytohormone metabolism/signaling/response (16)"]
[null,"c48996.graph_c0",0.978967244925327,0.7496664602766391,0.595332321655615,3.40506743946987,3.500567045266191,3.56106098060985,0.00590173052749206,2.16103094432634,"up","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","K14484|5.42443e-52|sita:101771394|auxin-responsive protein IAA9-like; K14484 auxin-responsive protein IAA (A)","--","--","AUX/IAA family","Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c57709.graph_c1",12.6269901346764,11.663888567434096,11.8671758569352,1.55270963397209,1.416101286076578,1.2653319253203,5.51651068267229e-06,-3.10196668095322,"down","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of translation (GO:0006417);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","K14484|2.02207e-16|bdi:100833982|auxin-responsive protein IAA2-like; K14484 auxin-responsive protein IAA (A)","--","--","AUX/IAA family","Auxin-responsive protein IAA2 GN=P0710E05.18 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c57709.graph_c0",8.13458012415933,7.2149292752577185,7.01677135388188,1.00332951858144,1.0794040841517185,1.14468460888048,4.74945287959316e-07,-2.80230807453375,"down","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","K14484|6.90722e-36|bdi:100833982|auxin-responsive protein IAA2-like; K14484 auxin-responsive protein IAA (A)","--","--","AUX/IAA family","Auxin-responsive protein IAA18 GN=IAA18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","unnamed protein product [Triticum aestivum]"]
[null,"c63549.graph_c0",72.8988818849624,70.21125255401519,74.5447484784695,15.8611564745418,17.648998651140854,19.2603508412285,4.61647844728444e-11,-2.0534105618777,"down","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of translation (GO:0006417);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","K14484|1.7807e-106|sbi:SORBI_10g019590|SORBIDRAFT_10g019590, Sb10g019590; hypothetical protein; K14484 auxin-responsive protein IAA (A)","--","--","AUX/IAA family","Auxin-responsive protein IAA21 GN=OSJNBa0012F14.28 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare] "]
[null,"c76367.graph_c0",188.374981257466,177.08348575435664,183.500338826683,4.83094083992688,16.404550841850092,27.8141153353548,9.26209279888448e-31,-3.49872050672303,"down","--","--","--","--","--","--","AUX/IAA family","Auxin response factor 5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","Auxin response factor 5 [Aegilops tauschii]"]
[null,"c24007.graph_c0",8.5449525394909,10.619084642681239,13.7551252101397,33.5092633179433,39.112658515837985,44.3249271285743,0.00177004344196197,1.82069311860525,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","hypothetical protein SORBIDRAFT_06g028090 [Sorghum bicolor] "]
[null,"c23015.graph_c0",2.91883709366488,3.251470709156681,3.90925139556415,0,0,0,1.10608124576609e-08,{"$error":"#NAME?"},"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to anoxia (GO:0034059);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF071 GN=ERF071 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","hypothetical protein AMTR_s00010p00098700 [Amborella trichopoda] "]
[null,"c59658.graph_c0",2.83024342287825,2.9982949082246333,3.46617588439348,9.34289475043913,10.051292785327352,10.6591778923623,0.00299469693022369,1.68467640783946,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: plastid (GO:0009536);; ","--","--","--","--","Ethylene-responsive transcription factor ERF039 GN=ERF039 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Os04g0550200 [Oryza sativa Japonica Group] "]
[null,"c63542.graph_c0",94.7931580887587,90.22419742300572,94.6776564995533,15.2293465880152,19.6029175671002,23.7804593705142,4.05692643676888e-14,-2.26482234698556,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: response to anoxia (GO:0034059);; Biological Process: cellular response to hypoxia (GO:0071456);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF073 GN=ERF073 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c78014.graph_c0",0.322641804807025,0.20554526265516093,0.109003246768813,3.94855358622717,4.9032354350970255,5.80888492961591,4.39785438264414e-08,4.51104951507175,"up","--","--","--","--","--","--","--","Ethylene-responsive transcription factor ERF073 GN=ERF073 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","hypothetical protein TRIUR3_07777 [Triticum urartu]"]
[null,"c55103.graph_c0",26.9291893295923,25.666639939434617,26.9707545432204,4.00281002707723,3.9532578205615576,3.86417303584027,8.74401830160509e-10,-2.75919551285873,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|2.99081e-08|zma:100272603|putative AP2/EREBP transcription factor superfamily protein; K09286 EREBP-like factor (A)","--","--","--","Ethylene-responsive transcription factor 5 GN=MQL5_9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare] "]
[null,"c66129.graph_c0",7.81271029116578,6.7273555845081,6.31473643630123,22.2630984041125,22.636423182047338,22.7833837281617,3.73947521088174e-05,1.68922705269784,"up","--","--","Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF112 GN=ERF112 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","hypothetical protein AMTR_s00010p00098700 [Amborella trichopoda] "]
[null,"c57084.graph_c0",1.14982708007949,0.7609787336250038,0.448228260533018,9.91293424894846,7.724978079021386,5.4597721283041,0.00585585799857022,3.28274453018677,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Dehydration-responsive element-binding protein 1B GN=M7J2.140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","PREDICTED: ethylene-responsive transcription factor ERF024-like [Brachypodium distachyon]"]
[null,"c49393.graph_c0",1.21291910217331,0.7239304821511147,0.307334910344031,9.37512093695434,10.25392637884183,11.0301925569409,1.27772733960924e-05,3.75931469822985,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","unnamed protein product [Triticum aestivum]"]
[null,"c56935.graph_c0",7.85811647853363,7.606819600037842,8.11620468154584,71.8014917635935,74.50962488461347,76.4726617567873,3.03802068232277e-24,3.23133556335007,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","AP2/EREBP-like protein [Hordeum vulgare subsp. vulgare] "]
[null,"c74731.graph_c0",84.6232489604062,82.82300574976271,89.3050631140955,25.0830608133907,28.629409929430906,31.8894649461768,9.70086731265478e-08,-1.59391909134154,"down","--","--","Biological Process: nuclear-transcribed mRNA catabolic process (GO:0000956);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: photoperiodism, flowering (GO:0048573);; ","--","[T]","Signal transduction mechanisms ","Leucine Rich repeats (2 copies);; Leucine rich repeat;; Leucine Rich Repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat;; Leucine Rich repeat;; AP2 domain","Ethylene-responsive transcription factor ERF003 GN=ERF003 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","unnamed protein product [Triticum aestivum]"]
["Transcription factor (19)"]
[null,"c71967.graph_c0",159.100375393113,149.7493827998719,155.373328486618,54.7462259196186,61.27797429852764,67.1969429344514,1.05093107837112e-05,-1.35058857989946,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","MADS-box protein 7 [Hordeum vulgare subsp. vulgare]"]
[null,"c54997.graph_c0",8.44297549131818,6.490097066492666,5.18622834831642,0.494386542331993,1.0987450291380165,1.69211606565266,0.00940634566988564,-2.62892842575692,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","K-box region;; SRF-type transcription factor (DNA-binding and dimerisation domain)","MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","MIKC-type MADS-box transcription factor WM19B [Triticum aestivum]"]
[null,"c65202.graph_c1",20.3579872400342,18.817977819790094,19.159766181525,4.2148596028061,6.950858438937044,9.61734869067862,0.00571336697056193,-1.50082106689406,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: maintenance of floral meristem identity (GO:0010076);; Biological Process: maintenance of inflorescence meristem identity (GO:0010077);; Biological Process: fruit development (GO:0010154);; Biological Process: floral meristem determinacy (GO:0010582);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K09264|2.12722e-94|bdi:100845222|AP1, MADS-box; MADS-box transcription factor 15-like; K09264 MADS-box transcription factor, plant (A)","[K]","Transcription ","K-box region;; SRF-type transcription factor (DNA-binding and dimerisation domain)","MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=2","MIKC-type MADS-box transcription factor WM8 [Campeiostachys nutans]"]
[null,"c42756.graph_c0",33.2602064809504,34.60740091816914,39.4153354472048,10.3821173889718,10.602438427858592,10.7167350824668,0.000176031587613963,-1.76686284636578,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: floral organ development (GO:0048437);; ","K09264|9.46925e-21|bdi:100822235|AGL6; MADS-box transcription factor 6; K09264 MADS-box transcription factor, plant (A)","--","--","--","MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","AGAMOUS LIKE6-like protein [Hordeum vulgare subsp. vulgare]"]
[null,"c74353.graph_c1",20.424844664407,23.06953255126357,28.0211736932465,8.72218372377616,10.38362038413234,11.9412208406472,0.00864002374963658,-1.21257072851107,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: flower development (GO:0009908);; Biological Process: maintenance of meristem identity (GO:0010074);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|3.46836e-10|bdi:100845222|AP1, MADS-box; MADS-box transcription factor 15-like; K09264 MADS-box transcription factor, plant (A)","--","--","--","MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=2","MIKC-type MADS-box transcription factor WM8 [Campeiostachys nutans]"]
[null,"c67426.graph_c0",523.056888971248,509.58004285545655,547.061201025211,208.339563584021,198.9123091897985,187.495931703678,7.07453700450264e-06,-1.41717028519275,"down","--","--","--","--","--","--","--","MADS-box transcription factor 26 GN=P0498H04.24 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","MADS-box transcription factor 26 [Aegilops tauschii]"]
[null,"c61626.graph_c0",7.55992725257512,7.609527786161909,8.42008109836489,1.92638248875883,2.486599937587804,3.0219513870409,0.00175526379297947,-1.67569450115992,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: maintenance of floral meristem identity (GO:0010076);; Biological Process: maintenance of inflorescence meristem identity (GO:0010077);; Biological Process: fruit development (GO:0010154);; Biological Process: floral meristem determinacy (GO:0010582);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K09264|6.96538e-121|bdi:100836119|MADS-box transcription factor 18 (A)","[K]","Transcription ","K-box region;; SRF-type transcription factor (DNA-binding and dimerisation domain)","MADS-box transcription factor 18 GN=OSJNBb0040H10.26 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c77105.graph_c0",10.8674211564541,11.745041729923237,13.7971664763847,0.7736704130427,0.8323317396326055,0.882669748826185,4.9725329608151e-12,-3.87913118309554,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain)","MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","MADS-box transcription factor 7-like [Brachypodium distachyon] "]
[null,"c24007.graph_c0",8.5449525394909,10.619084642681239,13.7551252101397,33.5092633179433,39.112658515837985,44.3249271285743,0.00177004344196197,1.82069311860525,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","hypothetical protein SORBIDRAFT_06g028090 [Sorghum bicolor] "]
[null,"c23015.graph_c0",2.91883709366488,3.251470709156681,3.90925139556415,0,0,0,1.10608124576609e-08,{"$error":"#NAME?"},"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to anoxia (GO:0034059);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF071 GN=ERF071 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","hypothetical protein AMTR_s00010p00098700 [Amborella trichopoda] "]
[null,"c59658.graph_c0",2.83024342287825,2.9982949082246333,3.46617588439348,9.34289475043913,10.051292785327352,10.6591778923623,0.00299469693022369,1.68467640783946,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: plastid (GO:0009536);; ","--","--","--","--","Ethylene-responsive transcription factor ERF039 GN=ERF039 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Os04g0550200 [Oryza sativa Japonica Group] "]
[null,"c63542.graph_c0",94.7931580887587,90.22419742300572,94.6776564995533,15.2293465880152,19.6029175671002,23.7804593705142,4.05692643676888e-14,-2.26482234698556,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: response to anoxia (GO:0034059);; Biological Process: cellular response to hypoxia (GO:0071456);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF073 GN=ERF073 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c78014.graph_c0",0.322641804807025,0.20554526265516093,0.109003246768813,3.94855358622717,4.9032354350970255,5.80888492961591,4.39785438264414e-08,4.51104951507175,"up","--","--","--","--","--","--","--","Ethylene-responsive transcription factor ERF073 GN=ERF073 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","hypothetical protein TRIUR3_07777 [Triticum urartu]"]
[null,"c55103.graph_c0",26.9291893295923,25.666639939434617,26.9707545432204,4.00281002707723,3.9532578205615576,3.86417303584027,8.74401830160509e-10,-2.75919551285873,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|2.99081e-08|zma:100272603|putative AP2/EREBP transcription factor superfamily protein; K09286 EREBP-like factor (A)","--","--","--","Ethylene-responsive transcription factor 5 GN=MQL5_9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare] "]
[null,"c66129.graph_c0",7.81271029116578,6.7273555845081,6.31473643630123,22.2630984041125,22.636423182047338,22.7833837281617,3.73947521088174e-05,1.68922705269784,"up","--","--","Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF112 GN=ERF112 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","hypothetical protein AMTR_s00010p00098700 [Amborella trichopoda] "]
[null,"c57084.graph_c0",1.14982708007949,0.7609787336250038,0.448228260533018,9.91293424894846,7.724978079021386,5.4597721283041,0.00585585799857022,3.28274453018677,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Dehydration-responsive element-binding protein 1B GN=M7J2.140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","PREDICTED: ethylene-responsive transcription factor ERF024-like [Brachypodium distachyon]"]
[null,"c49393.graph_c0",1.21291910217331,0.7239304821511147,0.307334910344031,9.37512093695434,10.25392637884183,11.0301925569409,1.27772733960924e-05,3.75931469822985,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","unnamed protein product [Triticum aestivum]"]
[null,"c56935.graph_c0",7.85811647853363,7.606819600037842,8.11620468154584,71.8014917635935,74.50962488461347,76.4726617567873,3.03802068232277e-24,3.23133556335007,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","AP2/EREBP-like protein [Hordeum vulgare subsp. vulgare] "]
[null,"c74731.graph_c0",84.6232489604062,82.82300574976271,89.3050631140955,25.0830608133907,28.629409929430906,31.8894649461768,9.70086731265478e-08,-1.59391909134154,"down","--","--","Biological Process: nuclear-transcribed mRNA catabolic process (GO:0000956);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: photoperiodism, flowering (GO:0048573);; ","--","[T]","Signal transduction mechanisms ","Leucine Rich repeats (2 copies);; Leucine rich repeat;; Leucine Rich Repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat;; Leucine Rich repeat;; AP2 domain","Ethylene-responsive transcription factor ERF003 GN=ERF003 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","unnamed protein product [Triticum aestivum]"]
["Protein kinase activity (6)"]
[null,"c1032.graph_c0",2.0247550921077,2.3485669882132902,2.90723558314021,0.163022034870009,0.08192062053769296,0,0.00144901819991909,-4.89266429229161,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: polysaccharide binding (GO:0030247);; ","K04733|5.97577e-44|bdi:100830486|wall-associated receptor kinase 2-like (A)","[T]","Signal transduction mechanisms ","Protein tyrosine kinase;; Protein kinase domain","Wall-associated receptor kinase 5 (Precursor) GN=WAK5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Wall-associated receptor kinase 5 [Triticum urartu]"]
[null,"c34865.graph_c0",2.96378681116918,2.8709532219031666,3.06521495482747,0,0,0,4.70740146744815e-12,{"$error":"#NAME?"},"down","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ion binding (GO:0043167);; ","K04733|3.20506e-109|obr:102722061|wall-associated receptor kinase 4-like; K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] (A)","--","--","Protein tyrosine kinase;; Protein kinase domain","Wall-associated receptor kinase 5 (Precursor) GN=WAK5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Wall-associated receptor kinase 5 [Triticum urartu]"]
[null,"c42329.graph_c0",0,0,0,2.8990035741474,2.665532216911201,2.40540553750589,8.03196081151994e-06,"Inf","up","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Molecular Function: polysaccharide binding (GO:0030247);; ","--","--","--","Calcium-binding EGF domain","Wall-associated receptor kinase 3 (Precursor) GN=WAK3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","Wall-associated receptor kinase 5 [Aegilops tauschii]"]
[null,"c68413.graph_c0",0.241412782320436,0.23147324710878095,0.244681036608004,7.347267824442,7.9377838317566995,8.44892200075383,6.45527736833085e-18,5.03872013595859,"up","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: ion binding (GO:0043167);; ","--","--","--","Protein kinase domain;; Protein tyrosine kinase;; Wall-associated receptor kinase galacturonan-binding;; EGF-like domain;; Calcium-binding EGF domain;; Ulp1 protease family, C-terminal catalytic domain","Wall-associated receptor kinase 2 (Precursor) GN=WAK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Wall-associated receptor kinase 2 [Aegilops tauschii]"]
[null,"c94575.graph_c0",1.30421223225524,1.4078800516058951,1.65233587611714,0,0,0,0.00864002374963658,{"$error":"#NAME?"},"down","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ion binding (GO:0043167);; ","K04733|7.49399e-34|sita:101758170|wall-associated receptor kinase 4-like (A)","--","--","Protein tyrosine kinase;; Protein kinase domain","Wall-associated receptor kinase 5 (Precursor) GN=WAK5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Wall-associated receptor kinase 5 [Aegilops tauschii]"]
[null,"c60151.graph_c0",8.50517049974663,8.33346692016728,8.99511003260466,2.42951260595447,2.777589598513116,3.09789069508663,0.00103050650235195,-1.64647422730985,"down","--","--","Molecular Function: binding (GO:0005488);; Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; ","--","--","--","--","Wall-associated receptor kinase-like 9 (Precursor) GN=WAKL9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","PREDICTED: wall-associated receptor kinase 2-like [Setaria italica]"]
["Gene function","ID","XH09-28-1_FPKM","XH09-28-2_FPKM","XH09-28-3_FPKM","ZhN03-28-1_FPKM","ZhN03-28-2_FPKM","ZhN03-28-3_FPKM","FDR","log2FC","regulated","COG_class","COG_class_annotation","GO_annotation","KEGG_annotation","KOG_class","KOG_class_annotation","Pfam_annotation","Swissprot_annotation","nr_annotation"]
["Cell wall hydrolysis/modification (13)"]
[null,"c61657.graph_c0",22.4584123813334,43.7898118068689,27.6019382991993,0.513149045141597,2.47874393357677,1.63352885805123,2.03211990288986e-06,-4.29248815299924,"down","--","--","Molecular Function: sucrose alpha-glucosidase activity (GO:0004575);; Cellular Component: cell wall (GO:0005618);; Cellular Component: vacuole (GO:0005773);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: response to wounding (GO:0009611);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: levanase activity (GO:0031219);; Cellular Component: apoplast (GO:0048046);; Molecular Function: inulinase activity (GO:0051670);; Biological Process: nectar secretion (GO:0071836);; Biological Process: response to karrikin (GO:0080167);; ","K01193|1.10489e-152|bdi:100821731|beta-fructofuranosidase, insoluble isoenzyme 1-like; K01193 beta-fructofuranosidase [EC:3.2.1.26] (A)","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 32 C terminal;; Glycosyl hydrolases family 32 N-terminal domain","Beta-fructofuranosidase, cell wall isozyme (Precursor) OS=Zea mays (Maize) PE=2 SV=1","Beta-fructofuranosidase, insoluble isoenzyme 1 [Aegilops tauschii]"]
[null,"c34438.graph_c0",3.11083968757488,1.58824166218377,5.99081400390875,0.149266173188997,0.0686689234570753,0.0001,0.0048548582130764,-5.54825553138057,"down","[G]","Carbohydrate transport and metabolism ","Molecular Function: sucrose alpha-glucosidase activity (GO:0004575);; Cellular Component: cell wall (GO:0005618);; Cellular Component: vacuole (GO:0005773);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: response to wounding (GO:0009611);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: levanase activity (GO:0031219);; Cellular Component: apoplast (GO:0048046);; Molecular Function: inulinase activity (GO:0051670);; Biological Process: nectar secretion (GO:0071836);; Biological Process: response to karrikin (GO:0080167);; ","K01193|0|bdi:100826413|beta-fructofuranosidase, insoluble isoenzyme 3-like; K01193 beta-fructofuranosidase [EC:3.2.1.26] (A)","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 32 N-terminal domain;; Glycosyl hydrolases family 32 C terminal","Beta-fructofuranosidase, insoluble isoenzyme 3 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Beta-fructofuranosidase, insoluble isoenzyme 3 [Aegilops tauschii]"]
[null,"c67902.graph_c0",113.330319937027,96.8457713317325,173.420306264684,18.7788769108151,14.7967548270439,25.6501059499312,5.48952880698822e-05,-2.60124719919,"down","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","--","--","--","Glycosyl hydrolases family 18","Chitinase 2 OS=Tulipa bakeri (Tulip) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare] "]
[null,"c43794.graph_c0",3.24724493827006,3.13892603800954,3.91112460883273,0.103874167753675,0.47786629229202,0.0001,0.00239006954366466,-4.14399990095009,"down","[G]","Carbohydrate transport and metabolism ","Molecular Function: catalytic activity (GO:0003824);; ","K01183|5.20315e-51|pmum:103320757|chitotriosidase-1-like; K01183 chitinase [EC:3.2.1.14] (A)","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 18;; Chitin binding Peritrophin-A domain","--","unnamed protein product [Blastocystis hominis]"]
[null,"c23990.graph_c0",8.97393362590411,6.176366484056,8.90818706763397,0.654215364904817,0.930263137045379,1.17803137731805,0.00654152204801581,-3.03743076288174,"down","--","--","Cellular Component: cell wall (GO:0005618);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: glycerol ether metabolic process (GO:0006662);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: enzyme activator activity (GO:0008047);; Molecular Function: xylan 1,4-beta-xylosidase activity (GO:0009044);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: stromule (GO:0010319);; Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);; Biological Process: electron transport chain (GO:0022900);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Biological Process: cell redox homeostasis (GO:0045454);; Cellular Component: apoplast (GO:0048046);; ","--","--","--","Glycosyl hydrolase family 3 C-terminal domain;; Glycosyl hydrolase family 3 N terminal domain;; Fibronectin type III-like domain","Probable beta-D-xylosidase 6 (Precursor) GN=BXL6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c46129.graph_c0",0,0.710915820414502,0.61433206393667,11.0427555528777,6.8304500531522,7.28658857001504,0.000430184189983318,4.31959536988332,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: cellulose binding (GO:0030248);; ","--","--","--","Glycosyl hydrolase family 61;; Fungal cellulose binding domain","--","hypothetical protein PTT_16178 [Pyrenophora teres f. teres 0-1] "]
[null,"c63163.graph_c0",29.6825496811532,19.715497029499,18.3901354436864,79.9533313485449,62.5225935157701,106.831165986778,0.00140389264764737,1.97565734593221,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Molecular Function: enzyme inhibitor activity (GO:0004857);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: secretion by cell (GO:0032940);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Biological Process: xylan catabolic process (GO:0045493);; ","K01183|0|sita:101786936|xylanase inhibitor protein 1-like; K01183 chitinase [EC:3.2.1.14] (A)","[M]","Cell wall/membrane/envelope biogenesis ","Glycosyl hydrolases family 18","Xylanase inhibitor protein 1 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","PREDICTED: xylanase inhibitor protein 1-like [Setaria italica]"]
[null,"c86342.graph_c0",0,0,0,2.13028789757631,1.55170619909119,2.07210505654289,0.000390543504467912,2.97565734593221,"up","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Matrixin;; Xylanase inhibitor N-terminal;; Eukaryotic aspartyl protease","Protein ASPARTIC PROTEASE IN GUARD CELL 2 (Precursor) GN=ASPG2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c75931.graph_c0",2.24829824200203,1.90378512853894,3.91930476947217,0.0001,0.0001,0.0001,2.98783078930198e-05,-3.97565734593221,"down","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor N-terminal;; Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease","Aspartic proteinase nepenthesin-2 (Precursor) GN=nep2 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1","PREDICTED: aspartic proteinase nepenthesin-1-like [Brachypodium distachyon]"]
[null,"c60174.graph_c0",2.90617738866677,1.81347364446471,1.12189995283604,0.0001,0.0001,0.0001,0.000959604896531433,-4.97565734593221,"down","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|2.16577e-148|bdi:100831194|cationic peroxidase SPC4-like; K00430 peroxidase [EC:1.11.1.7] (A)","--","--","Peroxidase","Peroxidase 12 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Peroxidase 12 [Aegilops tauschii]"]
[null,"c50063.graph_c0",12.6601970970472,6.31565057770285,18.1316551641072,0.347787687131283,1.06664962135313,0.410047080705934,0.000499925595797126,-4.30067206784553,"down","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|3.23399e-128|bdi:100839477|peroxidase 12-like; K00430 peroxidase [EC:1.11.1.7] (A)","--","--","Peroxidase","Peroxidase 2 (Fragment) OS=Hordeum vulgare (Barley) PE=2 SV=1","Peroxidase 12 [Triticum urartu]"]
[null,"c24088.graph_c0",0.157829798432764,0,0,2.27192517711658,3.30975018467132,5.35727008706495,0.00199240662880182,6.22765200210614,"up","--","--","Molecular Function: copper ion binding (GO:0005507);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Multicopper oxidase;; Multicopper oxidase"," ","Laccase-15 [Aegilops tauschii]"]
[null,"c77995.graph_c0",7.15323561231082,4.38250811738051,12.3081022167285,0.0001,0.0001,0.0001,0.00419588139498305,-7.22765200210614,"down","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|4.79612e-15|bdi:100839477|peroxidase 12-like; K00430 peroxidase [EC:1.11.1.7] (A)","--","--","--","Peroxidase 60 (Precursor) GN=MWD9.21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Peroxidase 12 [Triticum urartu]"]
["Hydrolase activity (36)"]
[null,"c52945.graph_c0",2.2661436809693,2.71992129909696,6.90648559797698,0.143072978226902,0.175519426015773,0,0.00732130754043268,-5.18776164927085,"down","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","K05610|9.59083e-08|mpp:MICPUCDRAFT_25831|hypothetical protein; K05610 ubiquitin carboxyl-terminal hydrolase L5 [EC:3.4.19.12] (A)","[Z]","Cytoskeleton ","Filamin/ABP280 repeat;; Ubiquitin carboxyl-terminal hydrolase, family 1","--","hypothetical protein RMATCC62417_05136 [Rhizopus microsporus] "]
[null,"c25140.graph_c0",1.163394505215,0.755964343928696,2.41473031593238,0.0001,0.0001,0.0001,0.00825976480614909,-4.18776164927085,"down","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; ","--","--","--","Domain of unknown function (DUF3357)","--","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c51652.graph_c0",2.75808557281133,1.67216953934419,3.25123102262148,0,0,0.0731395538674712,0.00148951151123017,-6.56352069219453,"down","--","--","--","--","--","--","--","--","Ubiquitin carboxyl-terminal hydrolase 13 [Triticum urartu]"]
[null,"c80488.graph_c0",1.45946398297914,2.16765233595754,4.28046088742871,0.079578267052851,0.146437838188022,0.112588814268199,0.00730561515336683,-4.48178083147702,"down","[R]","General function prediction only ","--","--","[R]","General function prediction only ","Alpha/beta hydrolase family;; Alpha/beta hydrolase family;; alpha/beta hydrolase fold","--","hypothetical protein SPRG_20075 [Saprolegnia parasitica CBS 223.65]"]
[null,"c42017.graph_c0",45.0768427360774,35.9652260420154,34.6016157552069,133.539623621754,129.917861497561,146.036957992967,0.00459579279757941,1.90804519267599,"up","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","[OW]","--","--","--","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c94286.graph_c0",0,0.103275733471844,0,0.72795471962843,1.28374803508341,1.37323185938814,0.00606662802259597,5.09210740059093,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines (GO:0016813);; ","K01190|1.103e-27|smo:SELMODRAFT_181800|hypothetical protein; K01190 beta-galactosidase [EC:3.2.1.23] (A)","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 2, TIM barrel domain;; Glycosyl hydrolases family 2, sugar binding domain;; Glycosyl hydrolases family 2","--","glycoside hydrolase family 2 protein [Setosphaeria turcica Et28A] "]
[null,"c7770.graph_c0",0,0,0,1.81464586231346,0.939167910943987,1.28369738071122,0.00484675300640524,6.09210740059093,"up","[C]","Energy production and conversion ","Molecular Function: acetyl-CoA hydrolase activity (GO:0003986);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: acetate metabolic process (GO:0006083);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Molecular Function: acetate CoA-transferase activity (GO:0008775);; ","--","[C]","Energy production and conversion ","Acetyl-CoA hydrolase/transferase N-terminal domain","--","hypothetical protein PTT_11541 [Pyrenophora teres f. teres 0-1] "]
[null,"c49411.graph_c0",2.72407975035343,3.64131771167207,9.39067847318379,0.20794522353758,0.136662622149554,0.0210146267836119,0.00895928311354105,-5.37052344602831,"down","[H]","Coenzyme transport and metabolism ","Molecular Function: adenosylhomocysteinase activity (GO:0004013);; Biological Process: one-carbon metabolic process (GO:0006730);; ","K01251|0|zma:100274418|uncharacterized LOC100274418; K01251 adenosylhomocysteinase [EC:3.3.1.1] (A)","[H]","Coenzyme transport and metabolism ","S-adenosyl-L-homocysteine hydrolase;; S-adenosyl-L-homocysteine hydrolase, NAD binding domain;; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain;; Acetohydroxy acid isomeroreductase, catalytic domain","Adenosylhomocysteinase GN=SAHH OS=Petroselinum crispum (Parsley) PE=2 SV=2","adenosylhomocysteinase (predicted) [Schizosaccharomyces pombe 972h-] "]
[null,"c31280.graph_c0",3.37699953383512,3.71765484274016,11.7329040865174,0.063295786857043,0.0582376227645129,0,0.00606662802259597,-7.23163223104868,"down","[R]","General function prediction only ","Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Molecular Function: hydrolase activity (GO:0016787);; ","K07955|2.99621e-84|csl:COCSUDRAFT_35801|P-loop containing nucleoside triphosphate hydrolase protein; K07955 ADP-ribosylation factor-like protein 8 (A)","[R]","General function prediction only ","ADP-ribosylation factor family;; Ras family;; Miro-like protein;; Gtr1/RagA G protein conserved region;; Signal recognition particle receptor beta subunit;; 50S ribosome-binding GTPase","ADP-ribosylation factor 1 GN=ARF1 OS=Daucus carota (Wild carrot) PE=2 SV=2","ADP-ribosylation factor-like protein 8B [Mortierella verticillata NRRL 6337]"]
[null,"c80490.graph_c0",0.903076830637198,0.794942396432038,1.42197188388642,0.11206544845759,0,0,0.00465176658015634,-4.69424335230011,"down","[EF]","--","Molecular Function: aspartate carbamoyltransferase activity (GO:0004070);; Molecular Function: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity (GO:0004088);; Molecular Function: binding (GO:0005488);; Biological Process: 'de novo' pyrimidine nucleobase biosynthetic process (GO:0006207);; Biological Process: arginine metabolic process (GO:0006525);; Biological Process: cellular response to farnesol (GO:0097308);; ","K11540|0|gsl:Gasu_42540|trifunctional protein carbamoyl-phosphate synthase (glutamine-dependent) / aspartate carbamoyltransferase / dihydroorotase (CAD protein) (EC:2.1.3.2 6.3.5.5 3.5.2.3); K11540 carbamoyl-phosphate synthase / aspartate carbamoyltransferase / dihydroorotase [EC:6.3.5.5 2.1.3.2 3.5.2.3] (A)","[R]","General function prediction only ","Carbamoyl-phosphate synthase L chain, ATP binding domain;; ATP-grasp domain;; Carbamoyl-phosphate synthase L chain, N-terminal domain;; MGS-like domain;; Amidohydrolase;; ATP-grasp domain;; RimK-like ATP-grasp domain;; D-ala D-ala ligase C-terminus;; Amidohydrolase family;; ATP-grasp domain;; Amidohydrolase","Carbamoyl-phosphate synthase large chain, chloroplastic (Precursor) GN=F1N18.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","hypothetical protein GUITHDRAFT_160213 [Guillardia theta CCMP2712] "]
[null,"c28976.graph_c0",1.20486331909112,1.64038378727627,3.31209974143528,0,0.0681955103430239,0.0262160782450139,0.000468497396587659,-6.00205919489238,"down","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: metal ion binding (GO:0046872);; ","K13148|0|ppp:PHYPADRAFT_135073|hypothetical protein; K13148 integrator complex subunit 11 [EC:3.1.27.-] (A)","[A]","RNA processing and modification ","Beta-Casp domain;; Metallo-beta-lactamase superfamily;; RNA-metabolising metallo-beta-lactamase;; Beta-lactamase superfamily domain;; Beta-lactamase superfamily domain;; Nucleotide-sugar transporter;; Triose-phosphate Transporter family","Cleavage and polyadenylation specificity factor subunit 3-II GN=T8O11.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","hypothetical protein MVEG_06781 [Mortierella verticillata NRRL 6337]"]
[null,"c54680.graph_c1",13.238136314852,16.7091096023184,13.5061804385557,0.882222480425412,0.405860662775465,0.780115497220795,0.00184607155246333,-4.29679240890299,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; ","K16292|7.15535e-16|osa:4346292|Os08g0556900; K16292 KDEL-tailed cysteine endopeptidase [EC:3.4.22.-] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Cathepsin propeptide inhibitor domain (I29)","Cysteine proteinase EP-B 2 (Precursor) GN=EPB2 OS=Hordeum vulgare (Barley) PE=1 SV=1","Os08g0556900 [Oryza sativa Japonica Group] "]
[null,"c67112.graph_c0",840.062782319017,770.72619715992,604.960876179796,255.260774672666,207.582574544833,250.693590987093,6.06918814227183e-05,-1.54871002573284,"down","--","--","Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);; Cellular Component: nucleus (GO:0005634);; Biological Process: defense response (GO:0006952);; Biological Process: negative regulation of peptidase activity (GO:0010466);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","--","--","--","--","Cysteine proteinase inhibitor GN=ICY OS=Hordeum vulgare (Barley) PE=1 SV=1","Dr1-associated corepressor [Aegilops tauschii]"]
[null,"c78276.graph_c0",1.4447133907663,1.90546554025086,5.61700467697606,0,0.0001,0,0.0076212891868478,-0.5487100257328399,"down","[LKJ]","--","Cellular Component: nucleus (GO:0005634);; Biological Process: transport (GO:0006810);; Cellular Component: membrane (GO:0016020);; Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","K18655|6.40983e-110|ccp:CHC_T00009449001|poly-A RNA export protein DBP5; K18655 ATP-dependent RNA helicase DDX19/DBP5 [EC:3.6.4.13] (A)","[A]","RNA processing and modification ","DEAD/DEAH box helicase;; Helicase conserved C-terminal domain","DEAD-box ATP-dependent RNA helicase 38 GN=T4D2.40 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","atp-dependent rna helicase dbp5 [Lichtheimia corymbifera JMRC:FSU:9682]"]
[null,"c64421.graph_c0",8.56341965508463,6.45719730589408,13.6010890931388,0,0.218111086944888,0.447186218384216,8.44261982207879e-06,-5.33120526110315,"down","[G]","Carbohydrate transport and metabolism ","Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: fructose-2,6-bisphosphate 2-phosphatase activity (GO:0004331);; Biological Process: sucrose metabolic process (GO:0005985);; Biological Process: fructose metabolic process (GO:0006000);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to blue light (GO:0009637);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: response to red light (GO:0010114);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: response to far red light (GO:0010218);; Cellular Component: stromule (GO:0010319);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: reductive pentose-phosphate cycle (GO:0019253);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: fructose 1,6-bisphosphate metabolic process (GO:0030388);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Molecular Function: fructose 1,6-bisphosphate 1-phosphatase activity (GO:0042132);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: apoplast (GO:0048046);; Biological Process: divalent metal ion transport (GO:0070838);; ","K03841|0|bdi:100840857|fructose-1,6-bisphosphatase, chloroplastic; K03841 fructose-1,6-bisphosphatase I [EC:3.1.3.11] (A)","[G]","Carbohydrate transport and metabolism ","Fructose-1-6-bisphosphatase","Fructose-1,6-bisphosphatase, chloroplastic (Precursor) GN=FBP OS=Triticum aestivum (Wheat) PE=2 SV=1","RecName: Full=Fructose-1,6-bisphosphatase, chloroplastic; Short=FBPase; AltName: Full=D-fructose-1,6-bisphosphate 1-phosphohydrolase; Flags: Precursor [Triticum aestivum] "]
[null,"c33638.graph_c0",1.75976601317261,1.19793323925975,1.99642660227839,0,0,0.0001,0.00220667448968495,-4.33120526110315,"down","--","--","--","K01307|1.79341e-25|cre:CHLREDRAFT_182461|GGH1; gamma-glutamyl hydrolase; K01307 gamma-glutamyl hydrolase [EC:3.4.19.9] (A)","[H]","Coenzyme transport and metabolism ","Peptidase C26;; Glutamine amidotransferase class-I","Gamma-glutamyl hydrolase 1 (Precursor) GN=GGH1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","secreted protein [Thraustotheca clavata]"]
[null,"c61851.graph_c0",112.68263402869,142.502422974845,108.045932830551,45.7091532980453,30.7212939348489,36.3260604110956,0.00696587976028682,-1.60320023154031,"down","--","--","Molecular Function: alpha-L-fucosidase activity (GO:0004560);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","GDSL-like Lipase/Acylhydrolase","GDSL esterase/lipase At3g26430 (Precursor) GN=At3g26430 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","GDSL esterase/lipase [Aegilops tauschii]"]
[null,"c41673.graph_c0",2.33314995109538,2.46453424617313,6.58878107888736,0.0482545682932687,0.0887967899435352,0.0341357309499762,0.00293368103868036,-6.00727451678368,"down","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","K05610|1.25763e-92|eus:EUTSA_v10018850mg|hypothetical protein; K05610 ubiquitin carboxyl-terminal hydrolase L5 [EC:3.4.19.12] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin carboxyl-terminal hydrolase, family 1;; RhoGAP domain","--","PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5 [Tarenaya hassleriana] "]
[null,"c51154.graph_c0",2.92233121893156,7.16159286944261,12.5706579872207,0,0.0001,0,0.00166205419678712,-5.00727451678368,"down","[R]","General function prediction only ","--","K06889|2.44598e-08|crb:CARUB_v10001528mg|hypothetical protein; K06889 (A)","[R]","General function prediction only ","Alpha/beta hydrolase family;; Alpha/beta hydrolase family;; alpha/beta hydrolase fold;; alpha/beta hydrolase fold;; Phospholipase/Carboxylesterase;; BAAT / Acyl-CoA thioester hydrolase C terminal","--","hypothetical protein PLEOSDRAFT_1033726, partial [Pleurotus ostreatus PC15]"]
[null,"c78143.graph_c0",2.94494156976124,3.66079851433972,8.64299445783593,0,0,0.0001,0.000845898890130544,-4.00727451678368,"down","[K]","Transcription ","Molecular Function: hydrolase activity (GO:0016787);; ","K15544|8.6281e-63|rcu:RCOM_1370030|Protein SSU72, putative; K15544 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] (A)","[K]","Transcription ","Ssu72-like protein","--","Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Rhizopus microsporus] "]
[null,"c49971.graph_c0",2.9637330439725,3.65510834168624,9.13172309022857,0.0923426065605163,0.127444830525038,0.0326620098807205,0.00275770384140831,-5.917108935385,"down","[R]","General function prediction only ","Cellular Component: plastid (GO:0009536);; ","--","[R]","General function prediction only ","Protein kinase domain;; Alpha/beta hydrolase family;; Alpha/beta hydrolase family;; alpha/beta hydrolase fold;; Chlamydia CHLPS protein (DUF818)","--","hypothetical protein MIMGU_mgv1a008700mg [Erythranthe guttata]"]
[null,"c23004.graph_c0",1.40438470238153,1.99515748236789,5.21270539577841,0.0001,0,0,0.00408124158975796,-4.917108935385,"down","[R]","General function prediction only ","Biological Process: nitrogen compound metabolic process (GO:0006807);; Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810);; ","K01431|3.11015e-164|mtr:MTR_4g093570|Beta-ureidopropionase; K01431 beta-ureidopropionase [EC:3.5.1.6] (A)","[E]","Amino acid transport and metabolism ","Carbon-nitrogen hydrolase","N-carbamoylputrescine amidase GN=F10A12.13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","unknown [Picea sitchensis]"]
[null,"c23155.graph_c0",3.21224924839034,3.54243541026468,8.09933622753955,0.154132067477333,0,0,0.000187963936732239,-6.48730885181784,"down","[A]","RNA processing and modification ","--","K14376|2.32754e-120|smo:SELMODRAFT_180849|hypothetical protein; K14376 poly(A) polymerase [EC:2.7.7.19] (A)","[A]","RNA processing and modification ","Poly(A) polymerase central domain;; Poly(A) polymerase predicted RNA binding domain;; Nucleotidyltransferase domain;; Peptidyl-tRNA hydrolase PTH2","Nuclear poly(A) polymerase 1 {ECO:0000303|PubMed:18479511} OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Putative Poly(A) polymerase [Rhizopus microsporus]"]
[null,"c76303.graph_c0",33.5489044667946,46.4850025511531,114.506763152029,1.90129562470212,2.13810318433699,0.523053311470115,0.00605805704621713,-5.36460943426908,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein peptidyl-prolyl isomerization (GO:0000413);; Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein folding (GO:0006457);; Molecular Function: hydrolase activity (GO:0016787);; ","K03767|1.18179e-77|cvr:CHLNCDRAFT_29941|hypothetical protein (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD","Peptidyl-prolyl cis-trans isomerase GN=CYP OS=Solanum lycopersicum (Tomato) PE=2 SV=1","peptidyl-prolyl cis-trans isomerase [Batrachochytrium dendrobatidis JAM81] "]
[null,"c75890.graph_c0",14.7627592266667,8.16249048983758,15.7424976393868,0.231994177619358,0.213454798030625,0.109409894361996,1.60432016442745e-08,-6.05318426586971,"down","[G]","Carbohydrate transport and metabolism ","--","K01101|4.3231e-57|crb:CARUB_v10028554mg|hypothetical protein; K01101 4-nitrophenyl phosphatase [EC:3.1.3.41] (A)","[P]","Inorganic ion transport and metabolism ","Haloacid dehalogenase-like hydrolase;; HAD-hyrolase-like;; haloacid dehalogenase-like hydrolase;; Haloacid dehalogenase-like hydrolase","Phosphoglycolate phosphatase 2 GN=PGLP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","hypothetical protein M413DRAFT_445277 [Hebeloma cylindrosporum h7]"]
[null,"c72047.graph_c1",149.178017447599,159.601981271887,102.565783495473,29.8379784149488,26.4340377630413,28.6101225207289,4.80711810233673e-06,-2.19502039237112,"down","[I]","Lipid transport and metabolism ","Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[V]","Defense mechanisms ","alpha/beta hydrolase fold;; Alpha/beta hydrolase family;; Carboxylesterase family","Probable carboxylesterase 15 GN=CXE15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c58500.graph_c0",6.2000668969238,5.92245307349018,14.6917279133568,0.119957791734891,0.110371589794736,0.0848592589022648,0.000276571114457923,-6.33748366456876,"down","[R]","General function prediction only ","Cellular Component: plastid (GO:0009536);; Biological Process: cytokinin biosynthetic process (GO:0009691);; Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds (GO:0016799);; ","K06966|7.97993e-73|sita:101758636|probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL5-like (A)","--","--","Possible lysine decarboxylase","Probable cytokinin riboside 5&apos;-monophosphate phosphoribohydrolase LOGL5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","hypothetical protein TRIUR3_33975 [Triticum urartu]"]
[null,"c23271.graph_c0",1.74710702041294,3.56794748272835,7.40415693141916,0.0806064764598263,0.0741649610746819,0.0570217720431259,0.00972236544560026,-5.83843640279487,"down","[T]","Signal transduction mechanisms ","Molecular Function: hydrolase activity (GO:0016787);; ","K14165|7.37991e-32|csl:COCSUDRAFT_6933|phosphatases II; K14165 atypical dual specificity phosphatase [EC:3.1.3.16 3.1.3.48] (A)","[V]","Defense mechanisms ","Dual specificity phosphatase, catalytic domain;; Prefoldin subunit","Putative dual specificity protein phosphatase DSP8 GN=DSP8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","phosphatases II, partial [Coccomyxa subellipsoidea C-169] "]
[null,"c30667.graph_c0",1.26163864009085,1.5566489627029,2.4526076200779,0,0,0.0001,0.000229925491250118,-4.83843640279487,"down","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: nucleobase-containing compound metabolic process (GO:0006139);; Cellular Component: membrane (GO:0016020);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","Reverse transcriptase-like;; zinc-binding in reverse transcriptase","Putative ribonuclease H protein At1g65750 GN=At1g65750 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] "]
[null,"c24703.graph_c0",0,0,0,2.85045534765703,4.37111092451453,2.68858487459489,0.000501227456569204,3.83843640279487,"up","--","--","--","K11855|3.73866e-18|ppp:PHYPADRAFT_137288|hypothetical protein; K11855 ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin carboxyl-terminal hydrolase","Ubiquitin carboxyl-terminal hydrolase 18 GN=UBP18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","predicted protein [Physcomitrella patens] "]
[null,"c24148.graph_c0",0.0415479093548211,0,0.0412435130713993,3.9871533452321,6.64920602802294,3.66671422545012,1.06142863657985e-07,7.5015189013392,"up","--","--","--","K11855|3.06048e-48|osa:4341708|Os06g0654000; K11855 ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin carboxyl-terminal hydrolase;; Ubiquitin carboxyl-terminal hydrolase;; Type IIB DNA topoisomerase","Ubiquitin carboxyl-terminal hydrolase 18 GN=UBP18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","Os06g0654000 [Oryza sativa Japonica Group] "]
[null,"c48606.graph_c0",2.48287076695454,2.80014151819256,8.53441530369687,0.0889064121680755,0,0.0314466119254503,0.00696518176862652,-6.72865891425949,"down","[P]","Inorganic ion transport and metabolism ","Molecular Function: ubiquitin-specific protease activity (GO:0004843);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; ","K11842|4.28978e-132|ppp:PHYPADRAFT_158740|hypothetical protein; K11842 ubiquitin carboxyl-terminal hydrolase 12/46 [EC:3.4.19.12] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Anion-transporting ATPase;; CobQ/CobB/MinD/ParA nucleotide binding domain;; AAA domain;; 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family;; SRP54-type protein, GTPase domain;; Ubiquitin carboxyl-terminal hydrolase;; Ubiquitin carboxyl-terminal hydrolase","Ubiquitin carboxyl-terminal hydrolase 4 GN=UBP4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Camelina sativa]"]
[null,"c24891.graph_c0",1.01806899894021,1.44382203438945,2.97568566561976,0.0678466618055287,0.062424823076865,0.0479953603391914,0.00667987474062128,-4.85954699932515,"down","--","--","--","K12847|2.45275e-98|csl:COCSUDRAFT_17970|cysteine proteinase; K12847 U4/U6.U5 tri-snRNP-associated protein 2 (A)","[Z]","Cytoskeleton ","Ubiquitin carboxyl-terminal hydrolase","Ubiquitin carboxyl-terminal hydrolase 8 GN=UBP8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","hypothetical protein GLOINDRAFT_301008 [Rhizophagus irregularis DAOM 181602] "]
[null,"c78043.graph_c0",3.64954918711973,3.72656044625117,9.37668770315033,0,0.118471235191375,0.0910866758218563,0.00163571118803867,-6.26734712724381,"down","--","--","Cellular Component: cytosol (GO:0005829);; Biological Process: protein folding (GO:0006457);; Biological Process: response to heat (GO:0009408);; Biological Process: pollen development (GO:0009555);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: embryonic pattern specification (GO:0009880);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: inflorescence meristem growth (GO:0010450);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: stamen morphogenesis (GO:0048448);; Biological Process: specification of floral organ number (GO:0048833);; ","--","[T]","Signal transduction mechanisms ","CS domain;; Homeobox domain","Protein BOBBER 1 GN=BOB1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","uncharacterized protein LOC100192456 [Zea mays] "]
[null,"c36917.graph_c0",1.12682573724985,1.99250857313499,4.03776549112403,0,0.060667417624651,0.0466441781686435,0.00291032378116594,-6.00838986011817,"down","[L]","Replication, recombination and repair ","--","K10756|3.2351e-87|smo:SELMODRAFT_121188|hypothetical protein; K10756 replication factor C subunit 3/5 (A)","[DL]","--","Uncharacterized conserved protein (DUF2146);; DNA polymerase III, delta subunit;; Replication factor C C-terminal domain","Replication factor C subunit 3 GN=At5g27740 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P-loop containing nucleoside triphosphate hydrolase protein [Punctularia strigosozonata HHB-11173 SS5] "]
[null,"c76305.graph_c0",7.87539424254829,9.60671676284861,28.385057342197,0.253612002463875,0.175008806210936,0.134555619104967,0.00823537861662854,-6.27245117565792,"down","[C]","Energy production and conversion ","Molecular Function: catalytic activity (GO:0003824);; Biological Process: metabolic process (GO:0008152);; ","K16054|9.40328e-25|cmo:103496078|probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1; K16054 methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] (A)","[E]","Amino acid transport and metabolism ","Haloacid dehalogenase-like hydrolase","Enolase-phosphatase E1 {ECO:0000255|HAMAP-Rule:MF_03118} GN=SORBIDRAFT_0019s002010 OS=Sorghum bicolor (Sorghum) PE=3 SV=1","hypothetical protein Csa_3G233480 [Cucumis sativus]"]
["Phytohormone metabolism/signaling/response (11)"]
[null,"c38045.graph_c0",1.91792724681883,1.95839854467701,4.97679803771553,0.161451112171623,0.111411787013544,0.0571060100793995,0.00606662802259597,-4.67583329459247,"down","--","--","Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: RNA catabolic process (GO:0006401);; Biological Process: organelle organization (GO:0006996);; Biological Process: response to organic substance (GO:0010033);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Biological Process: macromolecule modification (GO:0043412);; Biological Process: single-organism developmental process (GO:0044767);; Biological Process: positive regulation of cellular process (GO:0048522);; ","K12619|1.0419e-168|sot:102604337|5'-3' exoribonuclease 4-like; K12619 5'-3' exoribonuclease 2 [EC:3.1.13.-] (A)","[LA]","--","XRN 5'-3' exonuclease N-terminus","5&apos;-3&apos; exoribonuclease 4 GN=F20D21.30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","putative ethylene insensitive 5/7 [Solanum lycopersicum]"]
[null,"c73982.graph_c0",111.606793738112,91.9670675298841,55.0748215756247,189.083202226185,164.774401781269,183.504664039086,0.00696639080007339,1.13979756559709,"up","--","--","Molecular Function: phosphorelay response regulator activity (GO:0000156);; Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: protein histidine kinase activity (GO:0004673);; Molecular Function: ATP binding (GO:0005524);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: membrane (GO:0016020);; Biological Process: intracellular signal transduction (GO:0035556);; ","K14509|0|bdi:100834722|protein EIN4-like; K14509 ethylene receptor [EC:2.7.13.-] (A)","[T]","Signal transduction mechanisms ","GAF domain","Protein EIN4 GN=EIN4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare] "]
[null,"c76367.graph_c0",7.24560354878494,5.70048148126027,11.3193748165673,0.142484790728386,0.786590315484514,0.100795067758307,0.00161295467010698,-4.54383871335383,"down","--","--","--","--","--","--","AUX/IAA family","Auxin response factor 5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","Auxin response factor 5 [Aegilops tauschii]"]
[null,"c72951.graph_c1",1561.80237785928,1750.42088873377,1033.69006584622,3328.28031399336,3449.82254884657,3903.28838120954,4.69656075075205e-09,1.37870808799572,"up","--","--","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Cellular Component: cell wall (GO:0005618);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cell size (GO:0008361);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: killing of cells of other organism (GO:0031640);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: root hair elongation (GO:0048767);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cell wall organization (GO:0071555);; ","--","--","--","Gamma-thionin family","Defensin-like protein 1 OS=Hordeum vulgare (Barley) PE=1 SV=1","defensin [Triticum aestivum]"]
[null,"c56807.graph_c0",111.986923220442,148.262654176244,209.799452396098,17.2858296817223,37.867773864461,31.4438319769095,0.000327684624214972,-2.37508943178472,"down","--","--","Molecular Function: iron ion binding (GO:0005506);; Molecular Function: copper ion binding (GO:0005507);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: water transport (GO:0006833);; Biological Process: cellular copper ion homeostasis (GO:0006878);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to fructose (GO:0009750);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Biological Process: growth (GO:0040007);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","metallothionein-like protein type 3 [Hordeum vulgare subsp. vulgare]"]
[null,"c66133.graph_c0",98.0216657358357,70.4537156623578,87.8088970851417,18.0410534192836,22.2780568441402,21.6625103261365,0.000621621890254446,-1.9690830178605,"down","[R]","General function prediction only ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: poly(U) RNA binding (GO:0008266);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to abscisic acid (GO:0009737);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: stromule (GO:0010319);; Cellular Component: ribonucleoprotein complex (GO:0030529);; Biological Process: innate immune response (GO:0045087);; ","K11294|8.31011e-96|bdi:100832013|ribonucleoprotein At2g37220, chloroplastic-like; K11294 nucleolin (A)","[R]","General function prediction only ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);; RNA recognition motif (a.k.a. RRM, RBD, or RNP domain);; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","29 kDa ribonucleoprotein A, chloroplastic (Precursor) OS=Nicotiana sylvestris (Wood tobacco) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare] "]
[null,"c73878.graph_c1",0.90756801084328,0.873763752153418,2.34238891003414,0.124421348292377,0.0286196124003839,0,0.00901521855287663,-4.67101968202746,"down","[L]","Replication, recombination and repair ","Biological Process: telomere maintenance (GO:0000723);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Cellular Component: intracellular (GO:0005622);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Molecular Function: 3'-5' DNA helicase activity (GO:0043138);; Biological Process: cellular response to cold (GO:0070417);; Biological Process: cellular response to abscisic acid stimulus (GO:0071215);; Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","K10901|1.57748e-125|smo:SELMODRAFT_10140|hypothetical protein; K10901 bloom syndrome protein [EC:3.6.4.12] (A)","[L]","Replication, recombination and repair ","Helicase conserved C-terminal domain;; DEAD/DEAH box helicase;; Tetraspanin family","ATP-dependent DNA helicase Q-like 4A GN=At1g10930 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","DNA helicase isolog; 74946-78841 [Arabidopsis thaliana]"]
[null,"c64460.graph_c0",7.15178900969731,4.00932717426866,3.9673074046102,0.252324576449016,0.309547374891208,0.237995673318301,0.00318971889929076,-4.16585971498032,"down","[R]","General function prediction only ","Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plastid (GO:0009536);; Biological Process: response to abscisic acid (GO:0009737);; ","K06911|2.57472e-158|bdi:100825215|pirin-like protein; K06911 (A)","--","--","Pirin;; Pirin C-terminal cupin domain","Pirin-like protein OS=Solanum lycopersicum (Tomato) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare] "]
[null,"c66559.graph_c0",9.56200306909509,3.04558164648453,7.6632241407113,0.105231596012547,0.0968222103838874,0.148883621840296,0.000105653174823877,-5.75535274984528,"down","[S]","Function unknown ","Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: ion transport (GO:0006811);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: iron ion homeostasis (GO:0055072);; Biological Process: cellular response to iron ion (GO:0071281);; Biological Process: cellular response to ethylene stimulus (GO:0071369);; Biological Process: cellular response to nitric oxide (GO:0071732);; ","--","[S]","Function unknown ","VIT family","Vacuolar iron transporter homolog 5 GN=OSJNBa0070M12.11 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=3","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c23015.graph_c0",4.3658841463572,3.0444954577003,2.64262071118234,0,0,0.001,0.000307406367986116,-4.27245117565792,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to anoxia (GO:0034059);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF071 GN=ERF071 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","hypothetical protein AMTR_s00010p00098700 [Amborella trichopoda] "]
[null,"c70372.graph_c0",5.41343580946544,3.84837636218481,11.9039316408288,0.0821995947771033,0.2268923049888,0.290743793878235,0.00526051064792236,-5.06030865620409,"down","[R]","General function prediction only ","Molecular Function: iron ion binding (GO:0005506);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: cell wall (GO:0005618);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to salt stress (GO:0009651);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: detection of ethylene stimulus (GO:0009727);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Biological Process: oxidation-reduction process (GO:0055114);; ","K05933|9.72296e-153|obr:102702913|1-aminocyclopropane-1-carboxylate oxidase-like; K05933 aminocyclopropanecarboxylate oxidase [EC:1.14.17.4] (A)","[QR]","--","2OG-Fe(II) oxygenase superfamily;; non-haem dioxygenase in morphine synthesis N-terminal","1-aminocyclopropane-1-carboxylate oxidase 1 GN=ACO1 OS=Cucumis melo (Muskmelon) PE=2 SV=1","1-aminocyclopropane-1-carboxylate oxidase 3 [Triticum urartu]"]
["Transcription factor (34)"]
[null,"c47421.graph_c0",5.61077827851875,3.51562985155546,10.2532589266463,0.152965752299994,0.562967124396889,0.216418795142415,0.00511933434733976,-4.33565780805512,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","MADS-box protein 7 [Hordeum vulgare subsp. vulgare]"]
[null,"c42756.graph_c0",7.05637865728777,6.67155500527182,11.4150354739027,0,0,0.221775037971465,0.00108404440815461,-6.67664488703004,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: floral organ development (GO:0048437);; ","K09264|9.46925e-21|bdi:100822235|AGL6; MADS-box transcription factor 6; K09264 MADS-box transcription factor, plant (A)","--","--","--","MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","AGAMOUS LIKE6-like protein [Hordeum vulgare subsp. vulgare]"]
[null,"c59949.graph_c0",4.12606194469445,4.4259126379952,10.5912444023191,0.099989482635266,0.22999752666332,0.0353667455516422,0.000616191931981888,-5.68181703862295,"down","[S]","Function unknown ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity (GO:0003705);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: cytoplasm (GO:0005737);; Molecular Function: transcription factor binding (GO:0008134);; Cellular Component: nuclear speck (GO:0016607);; Biological Process: cell differentiation (GO:0030154);; Biological Process: male sex determination (GO:0030238);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: positive regulation of male gonad development (GO:2000020);; ","K11997|1.98619e-13|pxb:103942884|brain tumor protein-like; K11997 tripartite motif-containing protein 2/3 (A)","[O]","Posttranslational modification, protein turnover, chaperones ","NHL repeat;; HMG (high mobility group) box;; HMG-box domain","FACT complex subunit SSRP1 GN=T19N8.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","sex-determining region Y protein [Carica papaya] "]
[null,"c24251.graph_c1",4.57548077038548,12.5115397072165,4.46497664728602,0,0,0.065808087789016,0.000826328375303001,-8.21381210346963,"down","[L]","Replication, recombination and repair ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);; Molecular Function: RNA-DNA hybrid ribonuclease activity (GO:0004523);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: RNA-dependent DNA replication (GO:0006278);; Biological Process: DNA recombination (GO:0006310);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: plastid (GO:0009536);; Biological Process: DNA integration (GO:0015074);; ","--","[R]","General function prediction only ","--","--","H0502B11.3 [Oryza sativa Indica Group]"]
[null,"c51861.graph_c0",34.6339212923219,40.3707212335529,97.2535217391067,1.5176489097073,1.57091494894668,0.670999356779031,0.00121937416652837,-5.45824857705651,"down","[B]","Chromatin structure and dynamics ","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: nucleosome assembly (GO:0006334);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11251|8.52692e-37|cme:CYME_CMN170C|histone H2A; K11251 histone H2A (A)","[B]","Chromatin structure and dynamics ","RhoGAP domain;; Core histone H2A/H2B/H3/H4;; Histone-like transcription factor (CBF/NF-Y) and archaeal histone","Probable histone H2A.3 OS=Medicago truncatula (Barrel medic) PE=1 SV=1","Unknown protein [Arabidopsis thaliana]"]
[null,"c68540.graph_c0",1.5282221195883,17.6333112598366,20.4798478249309,0.0916600863766916,0,0,0.00253103648452815,-8.66112671912166,"down","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 40 GN=WRKY40 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c67543.graph_c0",5.02710020356215,3.82004090608872,3.82974185919137,18.1844935186723,29.3335630556187,23.1483702634282,0.000233071389379802,2.54963743462634,"up","--","--","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: nucleosome assembly (GO:0006334);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","--","[B]","Chromatin structure and dynamics ","Core histone H2A/H2B/H3/H4;; Histone-like transcription factor (CBF/NF-Y) and archaeal histone","Protein H2A.6 GN=H2A-3 OS=Triticum aestivum (Wheat) PE=2 SV=3","PREDICTED: uncharacterized protein LOC100826162 isoform X2 [Brachypodium distachyon]"]
[null,"c69134.graph_c0",14.279220182842,40.0964693508865,54.2654654638946,0.383481769946778,2.1758253518246,1.35639287492599,0.00204240070071237,-4.74800445652047,"down","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: chloroplast stroma (GO:0009570);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","ATPase family associated with various cellular activities (AAA)","Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic (Precursor) GN=RCAA OS=Hordeum vulgare (Barley) PE=2 SV=1","Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic [Aegilops tauschii]"]
[null,"c67137.graph_c0",0.757935727143931,1.41887051086472,1.50476558532849,0,0,0.0535976417749014,0.00794696352877114,-5.95757887534671,"down","[K]","Transcription ","Molecular Function: plastid sigma factor activity (GO:0001053);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Cellular Component: chloroplast (GO:0009507);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: cell differentiation (GO:0030154);; Biological Process: ncRNA metabolic process (GO:0034660);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: cellular response to light stimulus (GO:0071482);; Biological Process: seedling development (GO:0090351);; ","--","--","--","Sigma-70 region 3;; Sigma-70 region 2;; Sigma-70, region 4","RNA polymerase sigma factor sigF, chloroplastic (Precursor) GN=T1J8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","RNA polymerase sigma factor rpoD [Triticum urartu]"]
[null,"c28588.graph_c0",1.62076266571628,1.98595598518368,6.25678792119325,0.0432046694526005,0,0,0.00831908186769801,-7.73230349010491,"down","[K]","Transcription ","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; ","K03120|1.37601e-98|fve:101311656|TATA-box-binding protein-like; K03120 transcription initiation factor TFIID TATA-box-binding protein (A)","[K]","Transcription ","PHD-finger;; PHD-finger;; PHD-zinc-finger like domain;; Transcription factor TFIID (or TATA-binding protein, TBP)","TATA-box-binding protein OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","PREDICTED: TATA-box-binding protein-like [Fragaria vesca subsp. vesca]"]
[null,"c62400.graph_c0",9.28700274064254,15.5720401768931,25.5219699105536,0.11726698108893,0.64737486140885,0.414778771974431,6.68402756032743e-05,-5.36716457082315,"down","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: intracellular (GO:0005622);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","B-box zinc finger","B-box zinc finger protein 22 {ECO:0000303|PubMed:19920209} GN=T30F21.7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c45008.graph_c0",65.1011651653021,75.321372640205,170.03784134941,4.45397780505111,3.0052341164267,1.89047122444072,0.000944156238869143,-4.98058425001361,"down","--","--","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: nucleosome assembly (GO:0006334);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11252|5.66951e-58|obr:102705040|histone H2B-like; K11252 histone H2B (A)","[B]","Chromatin structure and dynamics ","Core histone H2A/H2B/H3/H4;; Histone-like transcription factor (CBF/NF-Y) and archaeal histone","Histone H2B OS=Olisthodiscus luteus (Marine phytoflagellate) PE=1 SV=2","PREDICTED: histone H2B-like [Oryza brachyantha] "]
[null,"c69557.graph_c3",41.7544919545174,52.2485059280898,125.459435037285,1.98944589515625,2.31499739655584,0.82785444215056,0.00226942672027523,-5.36388901320971,"down","[B]","Chromatin structure and dynamics ","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: nucleosome assembly (GO:0006334);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: thylakoid (GO:0009579);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11254|5.27927e-44|pda:103722501|histone H4-like; K11254 histone H4 (A)","[T]","Signal transduction mechanisms ","NUDIX domain;; Core histone H2A/H2B/H3/H4;; TATA box binding protein associated factor (TAF);; Histone-like transcription factor (CBF/NF-Y) and archaeal histone","Histone H4 OS=Olisthodiscus luteus (Marine phytoflagellate) PE=1 SV=2","Histone H4 [Aegilops tauschii]"]
[null,"c75328.graph_c3",31.0688368909781,34.4053769438219,49.9540796675241,99.0342915738367,104.965263326425,109.047533967606,0.00719235054125262,1.51773240288849,"up","[B]","Chromatin structure and dynamics ","--","--","[K]","Transcription ","Histone-like transcription factor (CBF/NF-Y) and archaeal histone","Autonomous transposable element EN-1 mosaic protein OS=Zea mays (Maize) PE=2 SV=1","hypothetical protein TRIUR3_31077 [Triticum urartu]"]
[null,"c28840.graph_c0",2.63988607212763,3.14485715003015,7.42487815484126,0.0659732264195314,0.242804399064103,0.0933401494039741,0.00510444164177554,-4.9991922224895,"down","--","--","--","--","[S]","Function unknown ","Integral membrane protein DUF92;; Transcription factor e(y)2","--","hypothetical protein VOLCADRAFT_44503 [Volvox carteri f. nagariensis] "]
[null,"c77407.graph_c0",2.54520069004628,4.57215375376268,9.77869800408174,0.169618533345507,0.156063786380538,0,0.00523241110875885,-5.65526025410316,"down","[R]","General function prediction only ","--","--","[R]","General function prediction only ","Zinc finger, C2H2 type;; C2H2-type zinc finger;; Zinc-finger double domain;; C2H2-type zinc finger","Probable lysine-specific demethylase ELF6 GN=F21E1.160 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","transcription factor iiia [Cryptococcus neoformans var. grubii H99]"]
[null,"c24134.graph_c0",1.66594456237856,2.3756722206296,5.27485778976947,0.0689106464163214,0.158509453382595,0,0.00353138125299419,-5.34128944981484,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: proteolysis (GO:0006508);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; Biological Process: protein catabolic process (GO:0030163);; Biological Process: cellular catabolic process (GO:0044248);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Molecular Function: peptidase activity, acting on L-amino acid peptides (GO:0070011);; Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","K08675|9.41627e-166|ppp:PHYPADRAFT_112893|hypothetical protein; K08675 Lon-like ATP-dependent protease [EC:3.4.21.-] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","ATP-dependent protease La (LON) domain;; ATPase family associated with various cellular activities (AAA);; AAA domain (Cdc48 subfamily);; AAA domain (dynein-related subfamily);; AAA domain;; Holliday junction DNA helicase ruvB N-terminus;; PrkA AAA domain;; Transcription factor S-II (TFIIS);; Transposase zinc-ribbon domain","Lon protease homolog, mitochondrial {ECO:0000255|HAMAP-Rule:MF_03120} (Precursor) OS=Ostreococcus lucimarinus (strain CCE9901) PE=3 SV=1","mitochondrial serine protease Pim1 [Aspergillus kawachii IFO 4308]"]
[null,"c57177.graph_c0",13.4974285343676,21.2803585233928,19.2300304588178,3.85900495111436,0.540311709941467,0.77149235825289,0.00022231389308079,-3.28907545846623,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","Transcription factor regulating root and shoot growth via Pin3;; Regulator of chromosome condensation (RCC1) repeat;; Regulator of chromosome condensation (RCC1) repeat","Ultraviolet-B receptor UVR8 GN=UVR8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","E3 ubiquitin-protein ligase HERC2 [Triticum urartu]"]
[null,"c46999.graph_c1",1.2659644680392,2.11198148100702,4.38956337878683,0.042777651676231,0.137757045558903,0.0151306545674279,0.00414785679735967,-5.29386592955115,"down","--","--","Cellular Component: transcription factor TFIIA complex (GO:0005672);; Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367);; ","K03122|1.13932e-09|cre:CHLREDRAFT_152677|FBB14; hypothetical protein (A)","[T]","Signal transduction mechanisms ","Fibronectin type III domain;; Transcription factor IIA, alpha/beta subunit;; Immunoglobulin I-set domain","--","Toa1p [Rhizophagus irregularis DAOM 197198w]"]
[null,"c53800.graph_c0",16.8018119134382,29.7498526009753,28.1231528382331,0,0,0,1.23324529189088e-15,{"$error":"#NAME?"},"down","--","--","Biological Process: RNA splicing, via endonucleolytic cleavage and ligation (GO:0000394);; Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: transcription factor TFIIA complex (GO:0005672);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367);; Biological Process: translational initiation (GO:0006413);; Biological Process: defense response (GO:0006952);; ","K03123|3.82764e-10|bdi:100828994|transcription initiation factor IIA subunit 2; K03123 transcription initiation factor TFIIA small subunit (A)","[K]","Transcription ","Transcription initiation factor IIA, gamma subunit, helical domain","Transcription initiation factor IIA subunit 2 GN=OSJNBa0068N01.8 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","hypothetical protein F775_43751 [Aegilops tauschii]"]
[null,"c77402.graph_c0",3.40280133856223,3.50677810407392,7.78786943678922,0.113385591668718,0.208649189540778,0.0267366744587037,0.000135254955074061,-5.36422200412987,"down","--","--","--","K02935|2.1845e-16|ccp:CHC_T00007217001|hypothetical protein; K02935 large subunit ribosomal protein L7/L12 (A)","[J]","Translation, ribosomal structure and biogenesis ","Basic region leucine zipper;; bZIP transcription factor;; Ribosomal protein L7/L12 C-terminal domain","50S ribosomal protein L12, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00368} OS=Porphyra purpurea (Red seaweed) PE=3 SV=1","hypothetical protein GLOINDRAFT_196452 [Rhizophagus irregularis DAOM 181602]"]
[null,"c77916.graph_c0",3.90733826055768,5.40838101965986,11.0327795700313,0.520789568879561,0,0.0736822781079845,0.00146400949531818,-4.98949882686765,"down","--","--","--","--","--","--","Transcription factor Pcc1","--","--"]
[null,"c79638.graph_c0",1.64018660066652,3.23794112124896,5.42723316725073,0.131167359826364,0,0.0927890117519935,0.00303612542902264,-5.40517848493755,"down","--","--","--","K15198|4.76515e-12|ccp:CHC_T00006844001|hypothetical protein; K15198 transcription factor TFIIIB component B'' (A)","[K]","Transcription ","--","--","hypothetical protein DI09_17p50 [Microsporidia sp. UGP3]"]
[null,"c52950.graph_c0",1.81853596258122,2.49216861330404,4.79806521380001,0.0574066327665359,0.0528190893777702,0,0.000105653174823877,-6.32567806977534,"down","--","--","--","--","[K]","Transcription ","RNA polymerase II transcription factor SIII (Elongin) subunit A","--","Elongin-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof4 PE=1 SV=3 [Rhizoctonia solani AG-1 IB]"]
[null,"c24613.graph_c0",1.25713531822448,2.1005392278004,3.97067061905057,0,0.126136842332226,0,0.0055862520360516,-5.88554233113233,"down","--","--","Cellular Component: mediator complex (GO:0016592);; ","K15151|9.09238e-18|ath:AT5G41910|MED10A; Mediator complex, subunit Med10; K15151 mediator of RNA polymerase II transcription subunit 10 (A)","[K]","Transcription ","Transcription factor subunit Med10 of Mediator complex","Mediator of RNA polymerase II transcription subunit 10a GN=MJC20.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform 2 [Fragaria vesca subsp. vesca]"]
[null,"c57281.graph_c0",7.91060970901905,6.98227695350859,8.65122840897109,0,0.0001,0,9.37232209133952e-06,-3.06030865620409,"down","--","--","--","--","--","--","Myb/SANT-like DNA-binding domain","--","hypothetical protein F775_23121 [Aegilops tauschii]"]
[null,"c71269.graph_c0",3.26231085716818,2.06531348060604,1.36013215296206,12.6009993627968,13.9704269670769,15.1705193470457,0.00522546613654936,2.72655244673701,"up","--","--","Biological Process: response to stress (GO:0006950);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cellular metabolic process (GO:0031323);; Biological Process: single-organism developmental process (GO:0044767);; Biological Process: meristem development (GO:0048507);; ","--","--","--","Myb/SANT-like DNA-binding domain","--","unnamed protein product [Triticum aestivum]"]
[null,"c79527.graph_c0",1.09401006404016,3.10304279562441,5.30930848371949,0,0.0001,0,0.00604342195710258,-1.8505677171709798,"down","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09338|2.5047e-06|sly:101255883|homeobox-leucine zipper protein HAT5; K09338 homeobox-leucine zipper protein (A)","[R]","General function prediction only ","Homeobox domain","Homeobox-leucine zipper protein ATHB-5 GN=ATHB-5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","hypothetical protein M408DRAFT_329958 [Serendipita vermifera MAFF 305830]"]
[null,"c35644.graph_c0",1.34793283894575,2.16287712681297,4.39647416368723,0,0,0.0001,0.00841657910501689,-0.8505677171709798,"down","--","--","--","K09338|1.16455e-07|pda:103710059|homeobox-leucine zipper protein HOX16-like; K09338 homeobox-leucine zipper protein (A)","[R]","General function prediction only ","Homeobox domain","Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","homeodomain-leucine zipper protein HD3 [Gossypium hirsutum]"]
[null,"c66707.graph_c0",3.85447392608996,4.51178153170578,3.45294336353815,26.9527406804988,27.7041690809684,22.4172391053284,0.0021723523651649,2.77804364556228,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: transcription, DNA-templated (GO:0006351);; ","--","--","--","--","Homeobox-leucine zipper protein ROC8 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","Homeobox-leucine zipper protein ROC8 [Aegilops tauschii]"]
[null,"c32072.graph_c0",4.95494722556454,6.18763719607934,15.0550428261206,0.281124783698295,0.147805270783696,0.11364016558862,0.00266523194118697,-5.51478004107951,"down","--","--","--","K08900|2.22806e-39|mis:MICPUN_99023|hypothetical protein; K08900 mitochondrial chaperone BCS1 (A)","[O]","Posttranslational modification, protein turnover, chaperones ","BCS1 N terminal;; ATPase family associated with various cellular activities (AAA);; Ribosomal protein L35Ae;; Homeobox domain","60S ribosomal protein L35a-3 GN=RPL35AC OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","Putative Bcs1p [Rhizopus microsporus]"]
[null,"c77308.graph_c0",4.48905171070872,5.46152248588202,14.2217973089195,0.458290144661104,0,0,0.0061722112749629,-5.61831827963405,"down","--","--","--","--","[R]","General function prediction only ","Homeobox domain;; Homeobox KN domain","--","--"]
[null,"c63542.graph_c0",61.3632728621983,76.7505329044788,58.5567021213668,17.0894470417575,12.2841999480133,15.8671195878726,0.00162519829233069,-2.03413043530355,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: response to anoxia (GO:0034059);; Biological Process: cellular response to hypoxia (GO:0071456);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF073 GN=ERF073 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","predicted protein [Hordeum vulgare subsp. vulgare]"]
[null,"c56935.graph_c0",19.570668157228,5.15203224003949,4.02205525595656,45.0267868345848,70.6226090617889,60.6557318750892,2.16564955725932e-05,2.69945601843125,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","AP2/EREBP-like protein [Hordeum vulgare subsp. vulgare] "]
["Protein kinase activity (3)"]
[null,"c68413.graph_c0",0,0,0,6.36002792634602,6.53221755140771,4.23756489856689,6.08339252683992e-08,4.72655244673701,"up","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: ion binding (GO:0043167);; ","--","--","--","Protein kinase domain;; Protein tyrosine kinase;; Wall-associated receptor kinase galacturonan-binding;; EGF-like domain;; Calcium-binding EGF domain;; Ulp1 protease family, C-terminal catalytic domain","Wall-associated receptor kinase 2 (Precursor) GN=WAK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Wall-associated receptor kinase 2 [Aegilops tauschii]"]
[null,"c42329.graph_c0",0,0,0,1.50409000310827,1.99895723661059,2.00979151766849,0.00578825376802524,5.72655244673701,"up","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Molecular Function: polysaccharide binding (GO:0030247);; ","--","--","--","Calcium-binding EGF domain","Wall-associated receptor kinase 3 (Precursor) GN=WAK3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","Wall-associated receptor kinase 5 [Aegilops tauschii]"]
[null,"c34865.graph_c0",0.926784293349403,0.567804544516103,1.1039931696401,0,0,0.0001,0.00762170728661603,-6.72655244673701,"down","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ion binding (GO:0043167);; ","K04733|3.20506e-109|obr:102722061|wall-associated receptor kinase 4-like; K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] (A)","--","--","Protein tyrosine kinase;; Protein kinase domain","Wall-associated receptor kinase 5 (Precursor) GN=WAK5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Wall-associated receptor kinase 5 [Triticum urartu]"]