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["Supplementary Table 1: Number of reads and number of detected SNVs and indels"]
["Sample","Target size","Reads","Read length","Total bases","Expected Cov (X)","Mapped reads+","Effective Cov (X)","Raw SNVs","Raw INDELs","*Strict Filter SNVs","*Strict Filter INDELs"]
["1st patient-Tumour1 Base",{"v":50000000,"d":"50,000,000"},{"v":54022290,"d":"54,022,290"},100,{"v":5402229000,"d":"5,402,229,000"},{"v":108.04458,"d":"108.04"},{"v":49738705,"d":"49,738,705"},{"v":99.47741,"d":"99.48"},{"v":225116,"d":"225,116"},{"v":18022,"d":"18,022"},{"v":1628,"d":"1,628"},{"v":2130,"d":"2,130"}]
["1st patient-Tumour2 Apex",{"v":50000000,"d":"50,000,000"},{"v":51415608,"d":"51,415,608"},100,{"v":5141560800,"d":"5,141,560,800"},{"v":102.831216,"d":"102.83"},{"v":45235390,"d":"45,235,390"},{"v":90.47078,"d":"90.47"},{"v":216393,"d":"216,393"},{"v":17838,"d":"17,838"},{"v":1628,"d":"1,628"},{"v":2130,"d":"2,130"}]
["1st patient-Tumour2 Base",{"v":50000000,"d":"50,000,000"},{"v":52056638,"d":"52,056,638"},100,{"v":5205663800,"d":"5,205,663,800"},{"v":104.113276,"d":"104.11"},{"v":46177418,"d":"46,177,418"},{"v":92.354836,"d":"92.35"},{"v":213508,"d":"213,508"},{"v":17747,"d":"17,747"},{"v":1628,"d":"1,628"},{"v":2130,"d":"2,130"}]
["1st patient-Normal",{"v":50000000,"d":"50,000,000"},{"v":56497854,"d":"56,497,854"},100,{"v":5649785400,"d":"5,649,785,400"},{"v":112.995708,"d":"113.00"},{"v":50135166,"d":"50,135,166"},{"v":100.270332,"d":"100.27"},{"v":232006,"d":"232,006"},{"v":18255,"d":"18,255"},{"v":1628,"d":"1,628"},{"v":2130,"d":"2,130"}]
["2nd patient-Tumour1 Apex",{"v":50000000,"d":"50,000,000"},{"v":52336578,"d":"52,336,578"},100,{"v":5233657800,"d":"5,233,657,800"},{"v":104.673156,"d":"104.67"},{"v":49420093,"d":"49,420,093"},{"v":98.840186,"d":"98.84"},{"v":545565,"d":"545,565"},{"v":28369,"d":"28,369"},{"v":1733,"d":"1,733"},{"v":2278,"d":"2,278"}]
["2nd patient-Tumour1 Base",{"v":50000000,"d":"50,000,000"},{"v":60280740,"d":"60,280,740"},100,{"v":6028074000,"d":"6,028,074,000"},{"v":120.56148,"d":"120.56"},{"v":57033018,"d":"57,033,018"},{"v":114.066036,"d":"114.07"},{"v":585967,"d":"585,967"},{"v":29126,"d":"29,126"},{"v":1733,"d":"1,733"},{"v":2278,"d":"2,278"}]
["2nd patient-Tumour2 Apex",{"v":50000000,"d":"50,000,000"},{"v":56414382,"d":"56,414,382"},100,{"v":5641438200,"d":"5,641,438,200"},{"v":112.828764,"d":"112.83"},{"v":53200303,"d":"53,200,303"},{"v":106.400606,"d":"106.40"},{"v":571255,"d":"571,255"},{"v":28595,"d":"28,595"},{"v":1733,"d":"1,733"},{"v":2778,"d":"2,778"}]
["2nd patient-Normal",{"v":50000000,"d":"50,000,000"},{"v":66765540,"d":"66,765,540"},100,{"v":6676554000,"d":"6,676,554,000"},{"v":133.53108,"d":"133.53"},{"v":62527762,"d":"62,527,762"},{"v":125.055524,"d":"125.06"},{"v":618910,"d":"618,910"},{"v":28894,"d":"28,894"},{"v":1733,"d":"1,733"},{"v":2778,"d":"2,778"}]
["3rd patient-Tumor1 Apex",{"v":50000000,"d":"50,000,000"},{"v":58541416,"d":"58,541,416"},100,{"v":5854141600,"d":"5,854,141,600"},{"v":117.082832,"d":"117.08"},{"v":55805883,"d":"55,805,883"},{"v":111.611766,"d":"111.61"},{"v":690221,"d":"690,221"},{"v":30147,"d":"30,147"},{"v":1628,"d":"1,628"},{"v":2555,"d":"2,555"}]
["3rd patient-Tumor1 Base",{"v":50000000,"d":"50,000,000"},{"v":61787922,"d":"61,787,922"},100,{"v":6178792200,"d":"6,178,792,200"},{"v":123.575844,"d":"123.58"},{"v":58330200,"d":"58,330,200"},{"v":116.6604,"d":"116.66"},{"v":653140,"d":"653,140"},{"v":30148,"d":"30,148"},{"v":1628,"d":"1,628"},{"v":2555,"d":"2,555"}]
["3rd patient-Tumor2 Base",{"v":50000000,"d":"50,000,000"},{"v":57071432,"d":"57,071,432"},100,{"v":5707143200,"d":"5,707,143,200"},{"v":114.142864,"d":"114.14"},{"v":53567052,"d":"53,567,052"},{"v":107.134104,"d":"107.13"},{"v":664479,"d":"664,479"},{"v":29874,"d":"29,874"},{"v":1628,"d":"1,628"},{"v":2555,"d":"2,555"}]
["3rd patient-Normal",{"v":50000000,"d":"50,000,000"},{"v":51860180,"d":"51,860,180"},100,{"v":5186018000,"d":"5,186,018,000"},{"v":103.72036,"d":"103.72"},{"v":49072940,"d":"49,072,940"},{"v":98.14588,"d":"98.15"},{"v":600240,"d":"600,240"},{"v":29479,"d":"29,479"},{"v":1628,"d":"1,628"},{"v":2555,"d":"2,555"}]
[]
[]
["* strict filtered data: segmental duplications removed, mutations with read number <4 eliminated, only including reliably genotyped mutations in 4 all samples, for each patient"]