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{"sheet":"Table S1","index":0,"n_rows":440327,"n_cols":20,"rows_kept":4500,"cut":true,"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
["Table S1: List of all identified orthogroups and pangenome categorization"]
["isolate","gene","orthogroup","N_genes","N_isolates","pangenome category","chr","start","stop","sigPhobius","CAZyClass","CAZyme","effector","CPM","GO","cluster","type","class","protein_length","origin"]
[" ST99CH_1A5","g1","OG0000008",18,13,"accessory","chr_1",42258,42653,"NA","NA","NA","NA",0,"NA","NA","NA","NA",131,"Europe"]
[" ST99CH_1A5","g10","OG0000526",1,19,"core","chr_1",97547,99391,"NA","NA","NA","NA","84.5605190822843","GO:0005515","NA","NA","NA",354,"Europe"]
[" ST99CH_1A5","g100","OG0011368",1,11,"accessory","chr_1",438676,439296,"NA","NA","NA","NA","0.3362372463111","NA","NA","NA","NA",206,"Europe"]
[" ST99CH_1A5","g1000","OG0001351",1,19,"core","chr_1",2850439,2852613,"NA","NA","NA","NA","92.3591514912999","NA","NA","NA","NA",670,"Europe"]
[" ST99CH_1A5","g10000","OG0002740",1,19,"core","chr_10",1494870,1497085,"NA","NA","NA","NA","63.3396029603177","GO:0046872","NA","NA","NA",678,"Europe"]
[" ST99CH_1A5","g10001","OG0002741",1,19,"core","chr_10",1498574,1501008,"NA","NA","NA","NA","22.1791128417539","NA","NA","NA","NA",790,"Europe"]
[" ST99CH_1A5","g10002","OG0002742",1,19,"core","chr_10",1501852,1505667,"NA","NA","NA","NA","29.7910087378098","GO:0005515","NA","NA","NA",1271,"Europe"]
[" ST99CH_1A5","g10003","OG0002743",1,19,"core","chr_10",1506114,1507179,"secreted","NA","NA","NA","2.88914994560149","NA","NA","NA","NA",313,"Europe"]
[" ST99CH_1A5","g10004","OG0002744",1,19,"core","chr_10",1507836,1509995,"secreted","NA","NA","NA","21.3420950023736","NA","NA","NA","NA",674,"Europe"]
[" ST99CH_1A5","g10005","OG0002745",1,19,"core","chr_10",1511106,1515126,"NA","NA","NA","NA","428.668615852762","GO:0000287","NA","NA","NA",1048,"Europe"]
[" ST99CH_1A5","g10005","OG0002745",1,19,"core","chr_10",1511106,1515126,"NA","NA","NA","NA","428.668615852762","GO:0030976","NA","NA","NA",1048,"Europe"]
[" ST99CH_1A5","g10005","OG0002745",1,19,"core","chr_10",1511106,1515126,"NA","NA","NA","NA","428.668615852762","GO:0030976","NA","NA","NA",1048,"Europe"]
[" ST99CH_1A5","g10005","OG0002745",1,19,"core","chr_10",1511106,1515126,"NA","NA","NA","NA","428.668615852762","GO:0016020","NA","NA","NA",1048,"Europe"]
[" ST99CH_1A5","g10005","OG0002745",1,19,"core","chr_10",1511106,1515126,"NA","NA","NA","NA","428.668615852762","GO:0003824","NA","NA","NA",1048,"Europe"]
[" ST99CH_1A5","g10005","OG0002745",1,19,"core","chr_10",1511106,1515126,"NA","NA","NA","NA","428.668615852762","GO:0030976","NA","NA","NA",1048,"Europe"]
[" ST99CH_1A5","g10006","OG0011641",1,11,"accessory","chr_10",1515749,1516409,"NA","NA","NA","NA","5.31165524144551","GO:0016627","NA","NA","NA",185,"Europe"]
[" ST99CH_1A5","g10006","OG0011641",1,11,"accessory","chr_10",1515749,1516409,"NA","NA","NA","NA","5.31165524144551","GO:0000104","NA","NA","NA",185,"Europe"]
[" ST99CH_1A5","g10006","OG0011641",1,11,"accessory","chr_10",1515749,1516409,"NA","NA","NA","NA","5.31165524144551","GO:0006099","NA","NA","NA",185,"Europe"]
[" ST99CH_1A5","g10006","OG0011641",1,11,"accessory","chr_10",1515749,1516409,"NA","NA","NA","NA","5.31165524144551","GO:0045281","NA","NA","NA",185,"Europe"]
[" ST99CH_1A5","g10007","OG0002746",1,19,"core","chr_10",1517003,1518048,"secreted","NA","NA","NA","35.3911940119001","NA","NA","NA","NA",326,"Europe"]
[" ST99CH_1A5","g10008","OG0009517",1,17,"accessory","chr_10",1518649,1520095,"NA","NA","NA","NA","1.40293654062704","NA","NA","NA","NA",446,"Europe"]
[" ST99CH_1A5","g10009","OG0011667",1,10,"accessory","chr_10",1522551,1523168,"NA","NA","NA","NA","0.801668937674963","NA","NA","NA","NA",205,"Europe"]
[" ST99CH_1A5","g1001","OG0001352",1,19,"core","chr_1",2853992,2855263,"NA","NA","NA","NA","45.4532804769266","NA","NA","NA","NA",423,"Europe"]
[" ST99CH_1A5","g10010","OG0009518",1,18,"accessory","chr_10",1524975,1526626,"NA","NA","NA","NA","15.9135400290529","GO:0016021","NA","NA","NA",498,"Europe"]
[" ST99CH_1A5","g10010","OG0009518",1,18,"accessory","chr_10",1524975,1526626,"NA","NA","NA","NA","15.9135400290529","GO:0055085","NA","NA","NA",498,"Europe"]
[" ST99CH_1A5","g10011","OG0009519",1,18,"accessory","chr_10",1528269,1529608,"secreted","NA","NA","NA","8.49147678871985","NA","NA","NA","NA",430,"Europe"]
[" ST99CH_1A5","g10012","OG0009520",1,18,"accessory","chr_10",1530520,1532861,"secreted","GH51","CAZyme","NA","15.0476576043103","GO:0046373","NA","NA","NA",690,"Europe"]
[" ST99CH_1A5","g10012","OG0009520",1,18,"accessory","chr_10",1530520,1532861,"secreted","GH51","CAZyme","NA","15.0476576043103","GO:0046556","NA","NA","NA",690,"Europe"]
[" ST99CH_1A5","g10013","OG0009521",1,18,"accessory","chr_10",1533776,1534469,"secreted","NA","NA","effector","2.50856001304577","NA","NA","NA","NA",210,"Europe"]
[" ST99CH_1A5","g10014","OG0009522",1,18,"accessory","chr_10",1535461,1536945,"NA","NA","NA","NA","2.68482139841408","NA","NA","NA","NA",494,"Europe"]
[" ST99CH_1A5","g10015","OG0000064",2,18,"accessory","chr_10",1537784,1542329,"NA","NA","NA","NA","11.9348273969579","GO:0046872","NA","NA","NA",1443,"Europe"]
[" ST99CH_1A5","g10015","OG0000064",2,18,"accessory","chr_10",1537784,1542329,"NA","NA","NA","NA","11.9348273969579","GO:0003676","NA","NA","NA",1443,"Europe"]
[" ST99CH_1A5","g10016","OG0000064",2,18,"accessory","chr_10",1542606,1546964,"NA","NA","NA","NA","0.477501666041153","NA","NA","NA","NA",1452,"Europe"]
[" ST99CH_1A5","g10017","OG0009523",1,18,"accessory","chr_10",1547239,1548467,"NA","NA","NA","NA","219.958906510797","GO:0055114","NA","NA","NA",354,"Europe"]
[" ST99CH_1A5","g10017","OG0009523",1,18,"accessory","chr_10",1547239,1548467,"NA","NA","NA","NA","219.958906510797","GO:0016491","NA","NA","NA",354,"Europe"]
[" ST99CH_1A5","g10017","OG0009523",1,18,"accessory","chr_10",1547239,1548467,"NA","NA","NA","NA","219.958906510797","GO:0008270","NA","NA","NA",354,"Europe"]
[" ST99CH_1A5","g10017","OG0009523",1,18,"accessory","chr_10",1547239,1548467,"NA","NA","NA","NA","219.958906510797","GO:0016491","NA","NA","NA",354,"Europe"]
[" ST99CH_1A5","g10017","OG0009523",1,18,"accessory","chr_10",1547239,1548467,"NA","NA","NA","NA","219.958906510797","GO:0055114","NA","NA","NA",354,"Europe"]
[" ST99CH_1A5","g10018","OG0009524",1,18,"accessory","chr_10",1553799,1554291,"secreted","NA","NA","effector","39.9213930525607","NA","NA","NA","NA",109,"Europe"]
[" ST99CH_1A5","g10019","OG0009525",1,18,"accessory","chr_10",1554884,1555642,"NA","NA","NA","NA","53.6770126549346","GO:0006779","cluster-23","other","t1pks",252,"Europe"]
[" ST99CH_1A5","g10019","OG0009525",1,18,"accessory","chr_10",1554884,1555642,"NA","NA","NA","NA","53.6770126549346","GO:0019354","cluster-23","other","t1pks",252,"Europe"]
[" ST99CH_1A5","g10019","OG0009525",1,18,"accessory","chr_10",1554884,1555642,"NA","NA","NA","NA","53.6770126549346","GO:0043115","cluster-23","other","t1pks",252,"Europe"]
[" ST99CH_1A5","g10019","OG0009525",1,18,"accessory","chr_10",1554884,1555642,"NA","NA","NA","NA","53.6770126549346","GO:0055114","cluster-23","other","t1pks",252,"Europe"]
[" ST99CH_1A5","g1002","OG0001353",1,19,"core","chr_1",2855778,2858127,"NA","NA","NA","NA","49.6921676425635","GO:0003824","NA","NA","NA",676,"Europe"]
[" ST99CH_1A5","g1002","OG0001353",1,19,"core","chr_1",2855778,2858127,"NA","NA","NA","NA","49.6921676425635","GO:0008152","NA","NA","NA",676,"Europe"]
[" ST99CH_1A5","g1002","OG0001353",1,19,"core","chr_1",2855778,2858127,"NA","NA","NA","NA","49.6921676425635","GO:0006629","NA","NA","NA",676,"Europe"]
[" ST99CH_1A5","g1002","OG0001353",1,19,"core","chr_1",2855778,2858127,"NA","NA","NA","NA","49.6921676425635","GO:0030729","NA","NA","NA",676,"Europe"]
[" ST99CH_1A5","g10020","OG0009526",1,18,"accessory","chr_10",1562400,1563377,"NA","NA","NA","NA","0.993927510185089","NA","cluster-23","other","t1pks",325,"Europe"]
[" ST99CH_1A5","g10021","OG0009527",1,18,"accessory","chr_10",1563789,1565662,"NA","NA","NA","NA","1.76602799036364","GO:0005506","cluster-23","biosynthetic","t1pks",550,"Europe"]
[" ST99CH_1A5","g10021","OG0009527",1,18,"accessory","chr_10",1563789,1565662,"NA","NA","NA","NA","1.76602799036364","GO:0016705","cluster-23","biosynthetic","t1pks",550,"Europe"]
[" ST99CH_1A5","g10021","OG0009527",1,18,"accessory","chr_10",1563789,1565662,"NA","NA","NA","NA","1.76602799036364","GO:0020037","cluster-23","biosynthetic","t1pks",550,"Europe"]
[" ST99CH_1A5","g10021","OG0009527",1,18,"accessory","chr_10",1563789,1565662,"NA","NA","NA","NA","1.76602799036364","GO:0055114","cluster-23","biosynthetic","t1pks",550,"Europe"]
[" ST99CH_1A5","g10022","OG0009528",1,18,"accessory","chr_10",1566282,1567930,"NA","NA","NA","NA","9.69372365734033","GO:0016021","cluster-23","transport","t1pks",531,"Europe"]
[" ST99CH_1A5","g10022","OG0009528",1,18,"accessory","chr_10",1566282,1567930,"NA","NA","NA","NA","9.69372365734033","GO:0055085","cluster-23","transport","t1pks",531,"Europe"]
[" ST99CH_1A5","g10023","OG0009529",1,18,"accessory","chr_10",1568321,1570007,"NA","NA","NA","NA","6.91770737086635","GO:0003824","cluster-23","biosynthetic","t1pks",464,"Europe"]
[" ST99CH_1A5","g10023","OG0009529",1,18,"accessory","chr_10",1568321,1570007,"NA","NA","NA","NA","6.91770737086635","GO:0009058","cluster-23","biosynthetic","t1pks",464,"Europe"]
[" ST99CH_1A5","g10023","OG0009529",1,18,"accessory","chr_10",1568321,1570007,"NA","NA","NA","NA","6.91770737086635","GO:0030170","cluster-23","biosynthetic","t1pks",464,"Europe"]
[" ST99CH_1A5","g10024","OG0009530",1,18,"accessory","chr_10",1570796,1572081,"NA","NA","NA","NA",0,"NA","cluster-23","biosynthetic-additional","t1pks",351,"Europe"]
[" ST99CH_1A5","g10025","OG0002747",1,18,"accessory","chr_10",1572225,1573934,"NA","NA","NA","NA","16.1786339844773","GO:0009058","cluster-23","biosynthetic-additional","t1pks",530,"Europe"]
[" ST99CH_1A5","g10025","OG0002747",1,18,"accessory","chr_10",1572225,1573934,"NA","NA","NA","NA","16.1786339844773","GO:0030170","cluster-23","biosynthetic-additional","t1pks",530,"Europe"]
[" ST99CH_1A5","g10025","OG0002747",1,18,"accessory","chr_10",1572225,1573934,"NA","NA","NA","NA","16.1786339844773","GO:0003824","cluster-23","biosynthetic-additional","t1pks",530,"Europe"]
[" ST99CH_1A5","g10026","OG0009531",1,18,"accessory","chr_10",1574751,1582283,"NA","NA","NA","NA","8.93519444751638","GO:0003824","cluster-23","biosynthetic","t1pks",2491,"Europe"]
[" ST99CH_1A5","g10026","OG0009531",1,18,"accessory","chr_10",1574751,1582283,"NA","NA","NA","NA","8.93519444751638","GO:0008152","cluster-23","biosynthetic","t1pks",2491,"Europe"]
[" ST99CH_1A5","g10026","OG0009531",1,18,"accessory","chr_10",1574751,1582283,"NA","NA","NA","NA","8.93519444751638","GO:0008152","cluster-23","biosynthetic","t1pks",2491,"Europe"]
[" ST99CH_1A5","g10026","OG0009531",1,18,"accessory","chr_10",1574751,1582283,"NA","NA","NA","NA","8.93519444751638","GO:0031177","cluster-23","biosynthetic","t1pks",2491,"Europe"]
[" ST99CH_1A5","g10026","OG0009531",1,18,"accessory","chr_10",1574751,1582283,"NA","NA","NA","NA","8.93519444751638","GO:0008152","cluster-23","biosynthetic","t1pks",2491,"Europe"]
[" ST99CH_1A5","g10026","OG0009531",1,18,"accessory","chr_10",1574751,1582283,"NA","NA","NA","NA","8.93519444751638","GO:0016740","cluster-23","biosynthetic","t1pks",2491,"Europe"]
[" ST99CH_1A5","g10026","OG0009531",1,18,"accessory","chr_10",1574751,1582283,"NA","NA","NA","NA","8.93519444751638","GO:0055114","cluster-23","biosynthetic","t1pks",2491,"Europe"]
[" ST99CH_1A5","g10026","OG0009531",1,18,"accessory","chr_10",1574751,1582283,"NA","NA","NA","NA","8.93519444751638","GO:0016491","cluster-23","biosynthetic","t1pks",2491,"Europe"]
[" ST99CH_1A5","g10027","OG0009532",1,18,"accessory","chr_10",1582624,1584412,"NA","NA","NA","NA","4.65789219003605","NA","cluster-23","other","t1pks",462,"Europe"]
[" ST99CH_1A5","g10028","OG0009533",1,18,"accessory","chr_10",1587063,1588782,"NA","NA","NA","NA","2.24081540233387","GO:0005506","cluster-23","biosynthetic","t1pks",500,"Europe"]
[" ST99CH_1A5","g10028","OG0009533",1,18,"accessory","chr_10",1587063,1588782,"NA","NA","NA","NA","2.24081540233387","GO:0016705","cluster-23","biosynthetic","t1pks",500,"Europe"]
[" ST99CH_1A5","g10028","OG0009533",1,18,"accessory","chr_10",1587063,1588782,"NA","NA","NA","NA","2.24081540233387","GO:0020037","cluster-23","biosynthetic","t1pks",500,"Europe"]
[" ST99CH_1A5","g10028","OG0009533",1,18,"accessory","chr_10",1587063,1588782,"NA","NA","NA","NA","2.24081540233387","GO:0055114","cluster-23","biosynthetic","t1pks",500,"Europe"]
[" ST99CH_1A5","g10029","OG0009534",1,18,"accessory","chr_10",1590998,1592385,"NA","NA","NA","NA","3.39622006913906","NA","cluster-23","other","t1pks",441,"Europe"]
[" ST99CH_1A5","g1003","OG0001354",1,19,"core","chr_1",2858706,2860148,"NA","NA","NA","NA","33.4399008516289","GO:0055085","NA","NA","NA",392,"Europe"]
[" ST99CH_1A5","g10030","OG0009535",1,18,"accessory","chr_10",1592880,1594615,"NA","NA","NA","NA","0.49228589478936","GO:0005506","cluster-23","biosynthetic","t1pks",520,"Europe"]
[" ST99CH_1A5","g10030","OG0009535",1,18,"accessory","chr_10",1592880,1594615,"NA","NA","NA","NA","0.49228589478936","GO:0016705","cluster-23","biosynthetic","t1pks",520,"Europe"]
[" ST99CH_1A5","g10030","OG0009535",1,18,"accessory","chr_10",1592880,1594615,"NA","NA","NA","NA","0.49228589478936","GO:0020037","cluster-23","biosynthetic","t1pks",520,"Europe"]
[" ST99CH_1A5","g10030","OG0009535",1,18,"accessory","chr_10",1592880,1594615,"NA","NA","NA","NA","0.49228589478936","GO:0055114","cluster-23","biosynthetic","t1pks",520,"Europe"]
[" ST99CH_1A5","g10030","OG0009535",1,18,"accessory","chr_10",1592880,1594615,"NA","NA","NA","NA","0.49228589478936","GO:0016705","cluster-23","biosynthetic","t1pks",520,"Europe"]
[" ST99CH_1A5","g10030","OG0009535",1,18,"accessory","chr_10",1592880,1594615,"NA","NA","NA","NA","0.49228589478936","GO:0055114","cluster-23","biosynthetic","t1pks",520,"Europe"]
[" ST99CH_1A5","g10031","OG0009536",1,18,"accessory","chr_10",1594787,1595251,"NA","NA","NA","NA","28.644959791611","NA","cluster-23","other","t1pks",154,"Europe"]
[" ST99CH_1A5","g10032","OG0009537",1,18,"accessory","chr_10",1595435,1596115,"NA","NA","NA","NA","41.0970104562559","NA","cluster-23","other","t1pks",202,"Europe"]
[" ST99CH_1A5","g10033","OG0010581",1,16,"accessory","chr_10",1596183,1598642,"NA","NA","NA","NA",0,"NA","cluster-23","other","t1pks",819,"Europe"]
[" ST99CH_1A5","g10034","OG0009538",1,18,"accessory","chr_10",1599285,1600847,"NA","NA","NA","NA",0,"NA","cluster-23","other","t1pks",520,"Europe"]
[" ST99CH_1A5","g10035","OG0009539",1,18,"accessory","chr_10",1601366,1602274,"NA","NA","NA","NA",0,"NA","cluster-23","other","t1pks",302,"Europe"]
[" ST99CH_1A5","g10036","OG0010808",1,15,"accessory","chr_10",1602647,1603528,"NA","NA","NA","NA",0,"NA","NA","NA","NA",293,"Europe"]
[" ST99CH_1A5","g10037","OG0009540",1,18,"accessory","chr_10",1603910,1605128,"NA","NA","NA","NA","11.231283151162","GO:0016705","NA","NA","NA",387,"Europe"]
[" ST99CH_1A5","g10037","OG0009540",1,18,"accessory","chr_10",1603910,1605128,"NA","NA","NA","NA","11.231283151162","GO:0055114","NA","NA","NA",387,"Europe"]
[" ST99CH_1A5","g10038","OG0009541",1,18,"accessory","chr_10",1605637,1606769,"NA","NA","NA","NA","2.87436571685329","GO:0008270","NA","NA","NA",273,"Europe"]
[" ST99CH_1A5","g10038","OG0009541",1,18,"accessory","chr_10",1605637,1606769,"NA","NA","NA","NA","2.87436571685329","GO:0016491","NA","NA","NA",273,"Europe"]
[" ST99CH_1A5","g10038","OG0009541",1,18,"accessory","chr_10",1605637,1606769,"NA","NA","NA","NA","2.87436571685329","GO:0055114","NA","NA","NA",273,"Europe"]
[" ST99CH_1A5","g10038","OG0009541",1,18,"accessory","chr_10",1605637,1606769,"NA","NA","NA","NA","2.87436571685329","GO:0055114","NA","NA","NA",273,"Europe"]
[" ST99CH_1A5","g10039","OG0009542",1,18,"accessory","chr_10",1607298,1608218,"NA","NA","NA","NA","5.55254564873191","GO:0003824","NA","NA","NA",306,"Europe"]
[" ST99CH_1A5","g10039","OG0009542",1,18,"accessory","chr_10",1607298,1608218,"NA","NA","NA","NA","5.55254564873191","GO:0006281","NA","NA","NA",306,"Europe"]
[" ST99CH_1A5","g10039","OG0009542",1,18,"accessory","chr_10",1607298,1608218,"NA","NA","NA","NA","5.55254564873191","GO:0006284","NA","NA","NA",306,"Europe"]
[" ST99CH_1A5","g1004","OG0001355",1,19,"core","chr_1",2860391,2862061,"NA","NA","NA","NA","35.6507958603992","GO:0005515","NA","NA","NA",556,"Europe"]
[" ST99CH_1A5","g10040","OG0000213",1,18,"accessory","chr_10",1608455,1610387,"NA","NA","NA","NA","95.2595699985109","GO:0003676","NA","NA","NA",514,"Europe"]
[" ST99CH_1A5","g10040","OG0000213",1,18,"accessory","chr_10",1608455,1610387,"NA","NA","NA","NA","95.2595699985109","GO:0000981","NA","NA","NA",514,"Europe"]
[" ST99CH_1A5","g10040","OG0000213",1,18,"accessory","chr_10",1608455,1610387,"NA","NA","NA","NA","95.2595699985109","GO:0005634","NA","NA","NA",514,"Europe"]
[" ST99CH_1A5","g10040","OG0000213",1,18,"accessory","chr_10",1608455,1610387,"NA","NA","NA","NA","95.2595699985109","GO:0006355","NA","NA","NA",514,"Europe"]
[" ST99CH_1A5","g10040","OG0000213",1,18,"accessory","chr_10",1608455,1610387,"NA","NA","NA","NA","95.2595699985109","GO:0008270","NA","NA","NA",514,"Europe"]
[" ST99CH_1A5","g10040","OG0000213",1,18,"accessory","chr_10",1608455,1610387,"NA","NA","NA","NA","95.2595699985109","GO:0046872","NA","NA","NA",514,"Europe"]
[" ST99CH_1A5","g10040","OG0000213",1,18,"accessory","chr_10",1608455,1610387,"NA","NA","NA","NA","95.2595699985109","GO:0003677","NA","NA","NA",514,"Europe"]
[" ST99CH_1A5","g10040","OG0000213",1,18,"accessory","chr_10",1608455,1610387,"NA","NA","NA","NA","95.2595699985109","GO:0005634","NA","NA","NA",514,"Europe"]
[" ST99CH_1A5","g10040","OG0000213",1,18,"accessory","chr_10",1608455,1610387,"NA","NA","NA","NA","95.2595699985109","GO:0006351","NA","NA","NA",514,"Europe"]
[" ST99CH_1A5","g10040","OG0000213",1,18,"accessory","chr_10",1608455,1610387,"NA","NA","NA","NA","95.2595699985109","GO:0008270","NA","NA","NA",514,"Europe"]
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["YEQ92","jg9996","OG0006555",1,19,"core","chr_5",494076,497917,"NA","NA","NA","NA","39.9668638365283","NA","NA","NA","NA",1263,"Asia"]
["YEQ92","jg9997","OG0006556",1,19,"core","chr_5",501303,503520,"NA","NA","NA","NA","6.45929112509548","NA","NA","NA","NA",597,"Asia"]
["YEQ92","jg9998","OG0011098",1,14,"accessory","chr_5",504209,504700,"NA","NA","NA","NA","0.403705695318467","NA","NA","NA","NA",163,"Asia"]
["YEQ92","jg9999","OG0006557",1,19,"core","chr_5",504980,506001,"NA","NA","NA","NA","8.88152529700628","NA","NA","NA","NA",323,"Asia"]

{"sheet":"Table S2","index":1,"n_rows":5789,"n_cols":7,"rows_kept":5789}
["Table S2: List of the genes encoding Major Facilitator Superfamily domains (IPR036259)"]
["isolate","gene","orthogroup","pangenome category","chr","start","stop"]
[" ST99CH_1A5","g10010","OG0009518","accessory","chr_10",1524975,1526626]
[" ST99CH_1A5","g10022","OG0009528","accessory","chr_10",1566282,1567930]
[" ST99CH_1A5","g10081","OG0000017","core","chr_10",1731728,1732631]
[" ST99CH_1A5","g10082","OG0000017","core","chr_10",1742395,1742961]
[" ST99CH_1A5","g10109","OG0000368","core","chr_11",76645,78591]
[" ST99CH_1A5","g10185","OG0002812","core","chr_11",294181,296436]
[" ST99CH_1A5","g10216","OG0002834","core","chr_11",376796,378583]
[" ST99CH_1A5","g10242","OG0002856","core","chr_11",454991,456646]
[" ST99CH_1A5","g10313","OG0002906","core","chr_11",644092,645688]
[" ST99CH_1A5","g10314","OG0002907","core","chr_11",647709,649383]
[" ST99CH_1A5","g10357","OG0010527","accessory","chr_11",780128,781832]
[" ST99CH_1A5","g10387","OG0002947","core","chr_11",848486,850252]
[" ST99CH_1A5","g10398","OG0002954","core","chr_11",881846,883699]
[" ST99CH_1A5","g10507","OG0003046","core","chr_11",1178981,1180621]
[" ST99CH_1A5","g10563","OG0003091","core","chr_11",1355441,1357675]
[" ST99CH_1A5","g10576","OG0003100","core","chr_11",1407656,1409600]
[" ST99CH_1A5","g10626","OG0009613","accessory","chr_11",1554333,1556097]
[" ST99CH_1A5","g10665","OG0003153","core","chr_12",132457,135331]
[" ST99CH_1A5","g10677","OG0003161","core","chr_12",167801,169556]
[" ST99CH_1A5","g10680","OG0003164","core","chr_12",180059,181879]
[" ST99CH_1A5","g10682","OG0003166","core","chr_12",185665,187131]
[" ST99CH_1A5","g1073","OG0001415","core","chr_1",3041810,3043940]
[" ST99CH_1A5","g10743","OG0003213","core","chr_12",349030,350602]
[" ST99CH_1A5","g10754","OG0003220","core","chr_12",392221,393954]
[" ST99CH_1A5","g10946","OG0003372","core","chr_12",1003099,1004951]
[" ST99CH_1A5","g10990","OG0003405","core","chr_12",1115036,1116704]
[" ST99CH_1A5","g11112","OG0010591","accessory","chr_13",18881,20770]
[" ST99CH_1A5","g11128","OG0003507","core","chr_13",90440,92260]
[" ST99CH_1A5","g11141","OG0003517","core","chr_13",115699,117174]
[" ST99CH_1A5","g11166","OG0003534","core","chr_13",196223,197988]
[" ST99CH_1A5","g11173","OG0003539","core","chr_13",214513,216143]
[" ST99CH_1A5","g11182","OG0010296","accessory","chr_13",243380,245297]
[" ST99CH_1A5","g11185","OG0003548","core","chr_13",251961,253931]
[" ST99CH_1A5","g11204","OG0003565","core","chr_13",293759,295714]
[" ST99CH_1A5","g11220","OG0003575","core","chr_13",329599,331942]
[" ST99CH_1A5","g11246","OG0003598","core","chr_13",387900,389942]
[" ST99CH_1A5","g1126","OG0001461","core","chr_1",3185221,3186756]
[" ST99CH_1A5","g11278","OG0003620","core","chr_13",513296,515179]
[" ST99CH_1A5","g11304","OG0003644","core","chr_13",573837,575261]
[" ST99CH_1A5","g11328","OG0003664","core","chr_13",631179,633395]
[" ST99CH_1A5","g11384","OG0009675","accessory","chr_13",834056,835728]
[" ST99CH_1A5","g11456","OG0003758","core","chr_13",1064130,1065729]
[" ST99CH_1A5","g11463","OG0003763","core","chr_13",1092903,1094719]
[" ST99CH_1A5","g11466","OG0003766","core","chr_13",1100051,1101871]
[" ST99CH_1A5","g11468","OG0000398","core","chr_13",1105723,1107018]
[" ST99CH_1A5","g11554","OG0012267","accessory","chr_14",407586,407987]
[" ST99CH_1A5","g1279","OG0001591","core","chr_1",3572371,3575158]
[" ST99CH_1A5","g1280","OG0014746","singleton","chr_1",3575752,3577548]
[" ST99CH_1A5","g134","OG0011369","accessory","chr_1",558177,559005]
[" ST99CH_1A5","g1344","OG0001647","core","chr_1",3742014,3744273]
[" ST99CH_1A5","g1433","OG0001718","core","chr_1",3976523,3978214]
[" ST99CH_1A5","g1468","OG0001748","core","chr_1",4075235,4077476]
[" ST99CH_1A5","g1478","OG0001758","core","chr_1",4093289,4095209]
[" ST99CH_1A5","g1504","OG0009466","accessory","chr_1",4156992,4158490]
[" ST99CH_1A5","g1544","OG0001817","core","chr_1",4300458,4302702]
[" ST99CH_1A5","g1549","OG0001822","core","chr_1",4322280,4324160]
[" ST99CH_1A5","g1577","OG0001845","core","chr_1",4385971,4388379]
[" ST99CH_1A5","g1631","OG0001894","core","chr_1",4515592,4517389]
[" ST99CH_1A5","g1653","OG0001913","core","chr_1",4630899,4632637]
[" ST99CH_1A5","g1700","OG0001959","core","chr_1",4752550,4754244]
[" ST99CH_1A5","g1718","OG0001974","core","chr_1",4788282,4789193]
[" ST99CH_1A5","g1732","OG0001987","core","chr_1",4845120,4850290]
[" ST99CH_1A5","g1771","OG0002025","core","chr_1",4937706,4940052]
[" ST99CH_1A5","g1779","OG0002032","core","chr_1",4965047,4967623]
[" ST99CH_1A5","g1796","OG0002043","core","chr_1",5005043,5006775]
[" ST99CH_1A5","g1874","OG0002112","core","chr_1",5246412,5248281]
[" ST99CH_1A5","g1912","OG0002148","core","chr_1",5351610,5353073]
[" ST99CH_1A5","g1918","OG0002154","core","chr_1",5374187,5377220]
[" ST99CH_1A5","g1953","OG0002180","core","chr_1",5469672,5471394]
[" ST99CH_1A5","g1960","OG0002187","core","chr_1",5484999,5486807]
[" ST99CH_1A5","g2012","OG0002231","core","chr_1",5601750,5603495]
[" ST99CH_1A5","g2015","OG0002234","core","chr_1",5606976,5609025]
[" ST99CH_1A5","g2022","OG0002240","core","chr_1",5625194,5626849]
[" ST99CH_1A5","g2026","OG0002244","core","chr_1",5635451,5637132]
[" ST99CH_1A5","g2045","OG0002257","core","chr_1",5691248,5693353]
[" ST99CH_1A5","g2159","OG0002357","core","chr_1",5995250,5996825]
[" ST99CH_1A5","g2180","OG0000516","accessory","chr_2",26447,27798]
[" ST99CH_1A5","g2296","OG0000268","core","chr_2",445671,446944]
[" ST99CH_1A5","g2349","OG0003898","core","chr_2",581787,583509]
[" ST99CH_1A5","g2439","OG0003975","core","chr_2",828003,829954]
[" ST99CH_1A5","g2487","OG0004017","core","chr_2",953221,954990]
[" ST99CH_1A5","g2489","OG0004018","core","chr_2",957355,959000]
[" ST99CH_1A5","g2502","OG0011338","accessory","chr_2",1033337,1034851]
[" ST99CH_1A5","g2587","OG0004101","core","chr_2",1245321,1247471]
[" ST99CH_1A5","g2611","OG0004124","core","chr_2",1309514,1311393]
[" ST99CH_1A5","g2639","OG0009711","accessory","chr_2",1376905,1378640]
[" ST99CH_1A5","g2690","OG0004196","core","chr_2",1550590,1552383]
[" ST99CH_1A5","g2703","OG0000179","core","chr_2",1590550,1591804]
[" ST99CH_1A5","g2704","OG0000407","core","chr_2",1592131,1593044]
[" ST99CH_1A5","g2748","OG0004248","core","chr_2",1737891,1739807]
[" ST99CH_1A5","g2754","OG0000408","accessory","chr_2",1750517,1752708]
[" ST99CH_1A5","g2821","OG0004305","core","chr_2",1973961,1975845]
[" ST99CH_1A5","g2825","OG0004309","core","chr_2",1991723,1993356]
[" ST99CH_1A5","g2859","OG0000133","core","chr_2",2070177,2074197]
[" ST99CH_1A5","g2924","OG0004386","core","chr_2",2249253,2251107]
[" ST99CH_1A5","g2993","OG0004445","core","chr_2",2419605,2421476]
[" ST99CH_1A5","g30","OG0000543","core","chr_1",166909,169062]
[" ST99CH_1A5","g3031","OG0004477","core","chr_2",2538600,2540631]
[" ST99CH_1A5","g308","OG0000751","core","chr_1",1032276,1034111]
[" ST99CH_1A5","g3096","OG0004538","core","chr_2",2714576,2723023]
[" ST99CH_1A5","g310","OG0000753","core","chr_1",1036307,1038289]
[" ST99CH_1A5","g3130","OG0004564","core","chr_2",2813840,2815424]
[" ST99CH_1A5","g3140","OG0004571","core","chr_2",2839647,2841361]
[" ST99CH_1A5","g3172","OG0004598","core","chr_2",2904124,2906106]
[" ST99CH_1A5","g3199","OG0004622","core","chr_2",2982137,2983940]
[" ST99CH_1A5","g3201","OG0004624","core","chr_2",2986660,2988331]
[" ST99CH_1A5","g3251","OG0004671","core","chr_2",3116224,3117954]
[" ST99CH_1A5","g3326","OG0000135","core","chr_2",3369479,3371371]
[" ST99CH_1A5","g3348","OG0004741","core","chr_2",3432757,3434469]
[" ST99CH_1A5","g3371","OG0009754","accessory","chr_2",3487832,3488725]
[" ST99CH_1A5","g3395","OG0004775","core","chr_2",3548129,3549779]
[" ST99CH_1A5","g3458","OG0004810","core","chr_3",99299,101008]
[" ST99CH_1A5","g3492","OG0004837","core","chr_3",200963,202804]
[" ST99CH_1A5","g3506","OG0004850","core","chr_3",227314,229162]
[" ST99CH_1A5","g3599","OG0004921","core","chr_3",534952,537103]
[" ST99CH_1A5","g3626","OG0004941","core","chr_3",656661,658365]
[" ST99CH_1A5","g363","OG0000794","core","chr_1",1180152,1181838]
[" ST99CH_1A5","g3666","OG0004977","core","chr_3",766081,767901]
[" ST99CH_1A5","g3675","OG0000432","core","chr_3",916997,917857]
[" ST99CH_1A5","g3681","OG0004990","core","chr_3",928524,930303]
[" ST99CH_1A5","g3684","OG0004993","core","chr_3",938828,940408]
[" ST99CH_1A5","g3748","OG0005047","core","chr_3",1191444,1193146]
[" ST99CH_1A5","g3842","OG0005126","core","chr_3",1406546,1408261]
[" ST99CH_1A5","g3847","OG0005130","core","chr_3",1415822,1417593]
[" ST99CH_1A5","g3888","OG0005163","core","chr_3",1520873,1523238]
[" ST99CH_1A5","g3900","OG0005174","core","chr_3",1548908,1550299]
[" ST99CH_1A5","g3971","OG0005229","core","chr_3",1752038,1754773]
[" ST99CH_1A5","g3991","OG0005246","core","chr_3",1820047,1822050]
[" ST99CH_1A5","g407","OG0000834","core","chr_1",1296053,1298311]
[" ST99CH_1A5","g4098","OG0005333","core","chr_3",2208563,2210005]
[" ST99CH_1A5","g4131","OG0005357","core","chr_3",2307734,2309487]
[" ST99CH_1A5","g4196","OG0005406","core","chr_3",2508846,2510374]
[" ST99CH_1A5","g4213","OG0005421","core","chr_3",2540648,2542408]
[" ST99CH_1A5","g4333","OG0005526","core","chr_3",2931272,2933229]
[" ST99CH_1A5","g434","OG0000859","core","chr_1",1369749,1371330]
[" ST99CH_1A5","g4349","OG0005541","core","chr_3",2982892,2984818]
[" ST99CH_1A5","g4353","OG0005545","core","chr_3",2990391,2992221]
[" ST99CH_1A5","g4405","OG0005582","core","chr_3",3140226,3142028]
[" ST99CH_1A5","g4413","OG0005589","core","chr_3",3161496,3163139]
[" ST99CH_1A5","g4447","OG0005621","core","chr_3",3262176,3263991]
[" ST99CH_1A5","g4456","OG0005630","core","chr_3",3281279,3283082]
[" ST99CH_1A5","g451","OG0000875","core","chr_1",1411190,1413121]
[" ST99CH_1A5","g4554","OG0005704","core","chr_3",3541781,3544057]
[" ST99CH_1A5","g4570","OG0000444","core","chr_3",3583256,3584715]
[" ST99CH_1A5","g4574","OG0005719","core","chr_3",3592121,3594092]
[" ST99CH_1A5","g4613","OG0005750","core","chr_4",49918,51926]
[" ST99CH_1A5","g4615","OG0005752","core","chr_4",58542,60704]
[" ST99CH_1A5","g4618","OG0005755","core","chr_4",67716,69245]
[" ST99CH_1A5","g4663","OG0005786","core","chr_4",338847,340853]
[" ST99CH_1A5","g4672","OG0005793","core","chr_4",361789,364842]
[" ST99CH_1A5","g4688","OG0005808","core","chr_4",398070,399980]
[" ST99CH_1A5","g470","OG0000892","core","chr_1",1461221,1463134]
[" ST99CH_1A5","g4744","OG0005863","core","chr_4",593380,595554]
[" ST99CH_1A5","g4793","OG0005904","core","chr_4",722092,723990]
[" ST99CH_1A5","g4806","OG0005909","core","chr_4",757228,759351]
[" ST99CH_1A5","g4823","OG0005921","core","chr_4",801348,803138]
[" ST99CH_1A5","g4875","OG0000450","core","chr_4",948818,950838]
[" ST99CH_1A5","g4884","OG0005971","core","chr_4",973551,975853]
[" ST99CH_1A5","g5025","OG0006096","core","chr_4",1372969,1374926]
[" ST99CH_1A5","g5028","OG0006099","core","chr_4",1383004,1384640]
[" ST99CH_1A5","g5045","OG0006109","core","chr_4",1451981,1454073]
[" ST99CH_1A5","g5104","OG0006160","core","chr_4",1724435,1728392]
[" ST99CH_1A5","g5128","OG0009850","accessory","chr_4",1775484,1779293]
[" ST99CH_1A5","g514","OG0000929","core","chr_1",1582794,1584942]
[" ST99CH_1A5","g5148","OG0006190","core","chr_4",1829390,1831097]
[" ST99CH_1A5","g5178","OG0006216","core","chr_4",1919962,1921743]
[" ST99CH_1A5","g5180","OG0006218","core","chr_4",1926585,1928818]
[" ST99CH_1A5","g5257","OG0006278","core","chr_4",2131220,2133195]
[" ST99CH_1A5","g5274","OG0006288","core","chr_4",2176846,2178783]
[" ST99CH_1A5","g5281","OG0006294","core","chr_4",2191884,2194591]
[" ST99CH_1A5","g5365","OG0006357","core","chr_4",2432756,2434858]
[" ST99CH_1A5","g5439","OG0006422","core","chr_4",2654658,2656539]
[" ST99CH_1A5","g5497","OG0006454","core","chr_4",2820428,2822059]
[" ST99CH_1A5","g5525","OG0006476","core","chr_4",2916218,2918104]
[" ST99CH_1A5","g5533","OG0010413","accessory","chr_4",2938775,2940285]
[" ST99CH_1A5","g5539","OG0006485","core","chr_5",64056,65915]
[" ST99CH_1A5","g5578","OG0006518","core","chr_5",210730,212520]
[" ST99CH_1A5","g5599","OG0006531","core","chr_5",280377,282179]
[" ST99CH_1A5","g56","OG0000564","core","chr_1",253869,255554]
[" ST99CH_1A5","g5660","OG0006567","core","chr_5",462589,464574]
[" ST99CH_1A5","g570","OG0000982","core","chr_1",1725526,1727567]
[" ST99CH_1A5","g5751","OG0006619","core","chr_5",745325,747182]
[" ST99CH_1A5","g5753","OG0006621","core","chr_5",751975,753758]
[" ST99CH_1A5","g5845","OG0000473","core","chr_5",1047407,1048927]
[" ST99CH_1A5","g590","OG0000328","core","chr_1",1769778,1771369]
[" ST99CH_1A5","g5942","OG0006785","core","chr_5",1284263,1286178]
[" ST99CH_1A5","g6087","OG0006911","core","chr_5",1647569,1649337]
[" ST99CH_1A5","g6116","OG0006940","core","chr_5",1724327,1725789]
[" ST99CH_1A5","g6192","OG0006994","core","chr_5",1924881,1926783]
[" ST99CH_1A5","g6215","OG0007007","core","chr_5",1988958,1990975]
[" ST99CH_1A5","g6243","OG0000017","core","chr_5",2055199,2057127]
[" ST99CH_1A5","g6283","OG0007057","core","chr_5",2170675,2172487]
[" ST99CH_1A5","g6285","OG0009923","accessory","chr_5",2175700,2177599]
[" ST99CH_1A5","g6319","OG0007087","core","chr_5",2286522,2288446]
[" ST99CH_1A5","g6320","OG0007088","core","chr_5",2289997,2291170]
[" ST99CH_1A5","g635","OG0001030","core","chr_1",1882418,1885405]
[" ST99CH_1A5","g6363","OG0007122","core","chr_5",2398584,2399046]
[" ST99CH_1A5","g6364","OG0009930","accessory","chr_5",2399565,2400149]
[" ST99CH_1A5","g6421","OG0000226","core","chr_5",2573033,2575730]
[" ST99CH_1A5","g6459","OG0009935","accessory","chr_6",36928,39777]
[" ST99CH_1A5","g6461","OG0009936","accessory","chr_6",44961,47115]
[" ST99CH_1A5","g6478","OG0007196","core","chr_6",92318,94220]
[" ST99CH_1A5","g6500","OG0007211","core","chr_6",160387,162552]
[" ST99CH_1A5","g6518","OG0007224","core","chr_6",241903,243481]
[" ST99CH_1A5","g6531","OG0007233","core","chr_6",275911,277612]
[" ST99CH_1A5","g6548","OG0007247","core","chr_6",334840,336322]
[" ST99CH_1A5","g6590","OG0007284","core","chr_6",543048,544882]
[" ST99CH_1A5","g6668","OG0007330","core","chr_6",810970,814630]
[" ST99CH_1A5","g6694","OG0007354","core","chr_6",874635,876325]
[" ST99CH_1A5","g6741","OG0007398","core","chr_6",997217,999309]
[" ST99CH_1A5","g6742","OG0007399","core","chr_6",1000316,1001941]
[" ST99CH_1A5","g6797","OG0010445","accessory","chr_6",1151200,1152091]
[" ST99CH_1A5","g6807","OG0007454","core","chr_6",1175825,1177363]
[" ST99CH_1A5","g6858","OG0007497","core","chr_6",1339631,1341589]
[" ST99CH_1A5","g691","OG0001077","core","chr_1",2004226,2006207]
[" ST99CH_1A5","g6930","OG0007557","core","chr_6",1609208,1610670]
[" ST99CH_1A5","g694","OG0001080","core","chr_1",2015253,2017257]
[" ST99CH_1A5","g7059","OG0007663","core","chr_6",2026157,2028119]
[" ST99CH_1A5","g7068","OG0007671","core","chr_6",2112312,2114130]
[" ST99CH_1A5","g712","OG0000113","core","chr_1",2073627,2075288]
[" ST99CH_1A5","g7160","OG0007735","core","chr_6",2358025,2359634]
[" ST99CH_1A5","g7172","OG0007745","core","chr_6",2403719,2407711]
[" ST99CH_1A5","g7175","OG0007746","core","chr_6",2412195,2413865]
[" ST99CH_1A5","g7191","OG0007759","core","chr_6",2451147,2452911]
[" ST99CH_1A5","g7224","OG0000489","core","chr_7",55695,57687]
[" ST99CH_1A5","g7228","OG0007785","core","chr_7",76914,78820]
[" ST99CH_1A5","g7280","OG0007822","core","chr_7",257845,259723]
[" ST99CH_1A5","g7367","OG0007895","core","chr_7",499572,501241]
[" ST99CH_1A5","g7370","OG0007896","core","chr_7",505227,507467]
[" ST99CH_1A5","g7372","OG0007897","core","chr_7",508917,510658]
[" ST99CH_1A5","g7393","OG0007918","core","chr_7",559117,561096]
[" ST99CH_1A5","g7466","OG0007976","core","chr_7",771849,773891]
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["YEQ92","jg8250","OG0002112","core","chr_1",5390878,5392740]
["YEQ92","jg8288","OG0002148","core","chr_1",5469462,5470925]
["YEQ92","jg8294","OG0002154","core","chr_1",5482223,5485257]
["YEQ92","jg8330","OG0002180","core","chr_1",5610863,5612585]
["YEQ92","jg8339","OG0002187","core","chr_1",5626839,5628647]
["YEQ92","jg8391","OG0002231","core","chr_1",5743559,5745303]
["YEQ92","jg8394","OG0002234","core","chr_1",5748766,5750818]
["YEQ92","jg8401","OG0002240","core","chr_1",5766913,5768569]
["YEQ92","jg8406","OG0002244","core","chr_1",5778619,5780288]
["YEQ92","jg8422","OG0002257","core","chr_1",5817462,5819618]
["YEQ92","jg844","OG0005246","core","chr_3",1826564,1828567]
["YEQ92","jg8539","OG0002357","core","chr_1",6121829,6123392]
["YEQ92","jg8563","OG0000516","accessory","chr_2",42148,44149]
["YEQ92","jg8661","OG0000268","core","chr_2",371190,373287]
["YEQ92","jg8705","OG0003898","core","chr_2",488891,490613]
["YEQ92","jg8797","OG0003975","core","chr_2",734903,736854]
["YEQ92","jg8848","OG0004017","core","chr_2",855919,857688]
["YEQ92","jg8850","OG0004018","core","chr_2",866804,868449]
["YEQ92","jg8864","OG0011338","accessory","chr_2",924862,926376]
["YEQ92","jg8946","OG0004101","core","chr_2",1153670,1155692]
["YEQ92","jg8970","OG0004124","core","chr_2",1222220,1224097]
["YEQ92","jg8999","OG0009711","accessory","chr_2",1292746,1294481]
["YEQ92","jg9049","OG0004196","core","chr_2",1457116,1458909]
["YEQ92","jg9063","OG0000179","core","chr_2",1499406,1500585]
["YEQ92","jg9064","OG0000407","core","chr_2",1500912,1501825]
["YEQ92","jg9111","OG0004248","core","chr_2",1670377,1672300]
["YEQ92","jg9117","OG0000408","accessory","chr_2",1683887,1686078]
["YEQ92","jg9186","OG0004305","core","chr_2",1962633,1964514]
["YEQ92","jg9191","OG0004309","core","chr_2",1980383,1982008]
["YEQ92","jg9232","OG0000133","core","chr_2",2101665,2104616]
["YEQ92","jg9233","OG0000133","core","chr_2",2100515,2101510]
["YEQ92","jg9295","OG0004386","core","chr_2",2294735,2296589]
["YEQ92","jg9361","OG0004445","core","chr_2",2466185,2468056]
["YEQ92","jg9398","OG0004477","core","chr_2",2562626,2564656]
["YEQ92","jg944","OG0005333","core","chr_3",2212486,2213928]
["YEQ92","jg9464","OG0011072","accessory","chr_2",2729498,2732112]
["YEQ92","jg9498","OG0004564","core","chr_2",2829027,2830611]
["YEQ92","jg9508","OG0004571","core","chr_2",2854831,2856545]
["YEQ92","jg9540","OG0004598","core","chr_2",2949909,2951891]
["YEQ92","jg9566","OG0004622","core","chr_2",3031280,3033083]
["YEQ92","jg9568","OG0004624","core","chr_2",3035803,3037474]
["YEQ92","jg9618","OG0004671","core","chr_2",3206807,3208567]
["YEQ92","jg9690","OG0000135","core","chr_2",3547194,3552181]
["YEQ92","jg9713","OG0004741","core","chr_2",3607493,3609202]
["YEQ92","jg9759","OG0004775","core","chr_2",3752756,3754406]
["YEQ92","jg978","OG0005357","core","chr_3",2311604,2313369]
["YEQ92","jg9885","OG0006485","core","chr_5",84766,86625]
["YEQ92","jg9922","OG0006518","core","chr_5",250534,252332]
["YEQ92","jg9941","OG0006531","core","chr_5",317063,318865]
["YEQ92","jg9978","OG0006541","core","chr_5",441655,442129]

{"sheet":"Table S3","index":2,"n_rows":23,"n_cols":9,"rows_kept":23}
["Table S3: Isolates used to construct the global pangenome of Zymoseptoria tritici"]
["Collection code","Isolate","Country","City/Region (Lat:Long when known)","Source of infected leaves (Collector)","Collection source","Year of collection","Genome previously assembled","Related publication / genome assembly"]
["ST10CRI","_0616","Czech Republic","unknown","Bread wheat (Jana Drabesova)","ETH Zurich McDonald lab",2010,"no","Drabešová, J., Ryšánek, P., Brunner, P., McDonald, B.A., Croll, D. 2013. Population genetic structure of Mycosphaerella graminicola and Quinone Outside Inhibitor (QoI) resistance in the Czech Republic.  European Journal of Plant Pathology 135:211-224."]
["BD00 1","_1D1a1","Argentina","Barrow, 38.300° S  60.2333° W","Durum wheat (Cristina Cordo)","ETH Zurich McDonald lab",2000,"no","Jürgens, T., Linde, C.C., McDonald, B.A. 2006. Genetic structure of Mycosphaerella graminicola populations from Iran, Argentina and Australia.  European Journal of Plant Pathology 115:223-233."]
["STOreg.S90","a15 4A.10","USA","Corvallis, Oregon, 44.5646° N 123.2620° W","Bread wheat (Bruce McDonald, Chris Mundt)","ETH Zurich McDonald lab",1990,"no","Chen, R.S., Boeger, J.M., and McDonald, B.A.  1994.  Genetic stability in a population of a plant pathogenic fungus over time.  Molecular Ecology 3:209-218."]
["CNR","_D3a1","Canada","Rosthern, 52.6623° N 106.3318° W","Bread wheat (Geoff Hughes)","ETH Zurich McDonald lab",1992,"no","Banke, S., Peschon, A., McDonald B.A. 2004.  Phylogenetic analysis of globally distributed Mycosphaerella graminicola populations based on three DNA sequence loci.  Fungal Genetics and Biology 41:226-238."]
["YEQ","_4","Yemen","Q. sharaa","Bread wheat (Omam Mamluk)","*UC Davis, David Gilchrist",1991,"no","Unpublished"]
["TN","_26/2-0","Tunisia ","Beja, 36.7333° N, 9.1844° E","Durum wheat (Sameh Boukef)","ETH Zurich McDonald lab",2008,"no","Boukef, S., McDonald, B.A., Yahyaoui, A., Rezgui, S., Brunner, P.C. 2012. Frequency of mutations associated with fungicide resistance and population structure of Mycosphaerella graminicola in Tunisia. European Journal of Plant Pathology 132:111–122."]
["STUR95","_E2C.2","Ukraine","Odessa, 46.4825° N, 30.7233° E","Bread wheat (Helen Klechkovskaya)","ETH Zurich McDonald lab",1995,"no","Zhan, J., G. H. J. Kema , C. Waalwijk and B. A. McDonald. 2002. Distribution of mating type alleles in the wheat pathogen Mycosphaerella graminicola over spatial scales from lesions to continents.  Fungal Genetics and Biology 36:128-136."]
["STAus01","_1H8","Australia","Wagga Wagga, 35.1082° S 147.3598° E","Bread wheat (Bruce McDonald, Andrew Milgate)","ETH Zurich McDonald lab",2001,"no","Zhan, J., C.C. Linde, T. Juergens, U. Merz, F. Steinebrunner, and B. A. McDonald.  2005. Variation for neutral markers is correlated with variation for quantitative traits in the pathogenic fungus Mycosphaerella graminicola.  Molecular Ecology 14:2683-2693."]
["STISY92","_Ar 4f","Israel","Nahal Oz, 31.4727° N 34.4977° E","Bread wheat (Oded Yarden)","ETH Zurich McDonald lab",1992,"no","Linde, C., Zhan, J., and B. A. McDonald.  2002. Population structure of Mycosphaerella graminicola: From lesions to continents.  Phytopathology 92:946-955."]
["I","_11a.2","USA","Daviess County, Indiana, 38.7020° N 87.1423° W","Bread wheat (Greg Shaner)","ETH Zurich McDonald lab",1993,"no","Zhan, J., G. H. J. Kema , C. Waalwijk and B. A. McDonald. 2002. Distribution of mating type alleles in the wheat pathogen Mycosphaerella graminicola over spatial scales from lesions to continents.  Fungal Genetics and Biology 36:128-136."]
["STCH95","_3B2a","Chile","Chillan, 36.5963° S, 72.0877° W","Bread wheat (Ricardo Madariaga)","ETH Zurich McDonald lab",1994,"no","Zhan, J., G. H. J. Kema , C. Waalwijk and B. A. McDonald. 2002. Distribution of mating type alleles in the wheat pathogen Mycosphaerella graminicola over spatial scales from lesions to continents.  Fungal Genetics and Biology 36:128-136."]
["STKE94","_MF1a","Kenya","Njoro, 0.3721° S, 35.9479° E","Bread wheat (Peter F. Arama)","ETH Zurich McDonald lab",1994,"no","Unpublished"]
["ST01IR","_26b","Iran","Mehran, 33.1177° N, 46.1733° E","Bread wheat (Mohammad Javan-Nikhah)","ETH Zurich McDonald lab",2001,"no","Stukenbrock, E.H., Banke, S., Javan-Nikkhah, M., McDonald, B.A. 2007. Origin and domestication of the fungal wheat pathogen Mycosphaerella graminicola via sympatric speciation.  Molecular Biology and Evolution 24:398-411."]
["ST01IR","_48b","Iran","Mehran, 33.1177° N, 46.1733° E","Bread wheat (Mohammad Javan-Nikhah)","ETH Zurich McDonald lab",2001,"no","Stukenbrock, E.H., Banke, S., Javan-Nikkhah, M., McDonald, B.A. 2007. Origin and domestication of the fungal wheat pathogen Mycosphaerella graminicola via sympatric speciation.  Molecular Biology and Evolution 24:398-411."]
["ST99CH","_3D7","Switzerland","Tänikon","Bread wheat (Bruce McDonald)","ETH Zurich McDonald lab",1999,"yes","Plissonneau et al. mBio 2016 https://doi.org/10.1128/mBio.01231-16"]
["ST99CH","_3D1","Switzerland","Tänikon","Bread wheat (Bruce McDonald)","ETH Zurich McDonald lab",1999,"yes","Plissonneau et al. BMC Biology 2018 https://doi.org/10.1186/s12915-017-0457-4"]
["ST99CH","_1A5","Switzerland","Tänikon","Bread wheat (Bruce McDonald)","ETH Zurich McDonald lab",1999,"yes","Plissonneau et al. BMC Biology 2018 https://doi.org/10.1186/s12915-017-0457-4"]
["ST99CH","_1E4","Switzerland","Tänikon","Bread wheat (Bruce McDonald)","ETH Zurich McDonald lab",1999,"yes","Plissonneau et al. BMC Biology 2018 https://doi.org/10.1186/s12915-017-0457-4"]
[null,"IPO323","Netherlands","unknown","Bread wheat (Gert Kema)","Wageningen U Gert Kema's lab",1984,"yes","Goodwin et al. PLOS Genetics 2010 https://doi.org/10.1371/journal.pgen.1002070"]
[]
[{"$nulls":5},"* These strains were first isolated in the Gilchrist lab, but are now maintained in the McDonald lab at ETH Zurich"]