{ "analysis": { "authors": "Sergei L Kosakovsky Pond, Ben Murrell, Steven Weaver and Temple iGEM / UCSD viral evolution group", "citation": "Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection (2015). Mol Biol Evol 32 (5): 1342-1353. v2.2 adds support for multiple-hit models", "contact": "spond@temple.edu", "info": "aBSREL (Adaptive branch-site random effects likelihood)\n uses an adaptive random effects branch-site model framework\n to test whether each branch has evolved under positive selection,\n using a procedure which infers an optimal number of rate categories per branch.", "requirements": "in-frame codon alignment and a phylogenetic tree", "version": "2.2" }, "branch attributes": { "0": { "ALSI_A_04": { "Baseline MG94xREV": 0.3731165860983051, "Baseline MG94xREV omega ratio": 0.2372642391970734, "Corrected P-value": null, "Full adaptive model": 1.81637799346915, "Full adaptive model (non-synonymous subs/site)": 1.671840316332597, "Full adaptive model (synonymous subs/site)": 0.1445376771365531, "LRT": null, "Nucleotide GTR": 0.2830672125896863, "Rate Distributions": [ [ 0.1585102419342435, 0.8306584481603679 ], [ 23.65855791921325, 0.1693415518396321 ] ], "Rate classes": 2, 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