begin mrbayes; log start replace; set autoclose = no nowarn=no; lset applyto = (all) nst = 6 rates = invgamma; prset applyto = (all) aamodelpr = mixed; unlink revmat = (all) shape = (all) pinvar = (all) statefreq = (all) tratio = (all); showmodel; mcmc ngen = 15000000 printfreq = 1000 samplefreq = 100 nchains = 4 temp = 0.2 checkfreq = 50000 diagnfreq = 1000 stopval = 0.01 stoprule = yes; sumt relburnin = yes burninfrac = 0.25 contype = halfcompat; sump relburnin = yes burninfrac =0.25; outgroup 1; log stop; end;