Information for 6-GCTATAAAAG (Motif 12)

C A T G T A G C A C G T G T C A G A C T C T G A C G T A C G T A T G C A T A C G
Reverse Opposite:
A T G C A C G T C G A T C G A T G A C T C T G A A C G T G T C A A T C G G T A C
p-value:1e-9
log p-value:-2.216e+01
Information Content per bp:1.815
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif12.04%
Number of Background Sequences with motif344.7
Percentage of Background Sequences with motif2.60%
Average Position of motif in Targets732.5 +/- 306.7bp
Average Position of motif in Background606.8 +/- 417.7bp
Strand Bias (log2 ratio + to - strand density)1.9
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-GCTATAAAAG-
GNCTATAAAAGG
 A C G T C A T G T A G C A C G T G T C A G A C T C T G A C G T A C G T A T G C A T A C G A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GCTATAAAAG------
-GTATAAAAGGCGGGG
 C A T G T A G C A C G T G T C A G A C T C T G A C G T A C G T A T G C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GCTATAAAAG------
-GTATAAAAGGCGGGG
 C A T G T A G C A C G T G T C A G A C T C T G A C G T A C G T A T G C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GCTATAAAAG
KGCCATAAAA-
 A C G T C A T G T A G C A C G T G T C A G A C T C T G A C G T A C G T A T G C A T A C G
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T

HOXD9/MA0913.2/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCTATAAAAG
GCAATAAAAC
 C A T G T A G C A C G T G T C A G A C T C T G A C G T A C G T A T G C A T A C G
T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C

CDX1/MA0878.2/Jaspar

Match Rank:6
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GCTATAAAAG
GGCCATAAAAC
 A C G T C A T G T A G C A C G T G T C A G A C T C T G A C G T A C G T A T G C A T A C G
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

CDX2/MA0465.2/Jaspar

Match Rank:7
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GCTATAAAAG
AAGCAATAAAAA
 A C G T A C G T C A T G T A G C A C G T G T C A G A C T C T G A C G T A C G T A T G C A T A C G
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A

CDX4/MA1473.1/Jaspar

Match Rank:8
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GCTATAAAAG
GGCAATAAAAC
 A C G T C A T G T A G C A C G T G T C A G A C T C T G A C G T A C G T A T G C A T A C G
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GCTATAAAAG
VGCCATAAAA-
 A C G T C A T G T A G C A C G T G T C A G A C T C T G A C G T A C G T A T G C A T A C G
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GCTATAAAAG
NGCAATTAAA-
 A C G T C A T G T A G C A C G T G T C A G A C T C T G A C G T A C G T A T G C A T A C G
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T