Information for 2-GGAAATTCCCAG (Motif 2)

T C A G C T A G T C G A T G C A C T G A G C A T A C G T A G T C A G T C G T A C G C T A T A C G
Reverse Opposite:
A G T C C G A T C A T G C T A G T C A G T C G A C G T A G A C T A C G T A G C T G A T C A G T C
p-value:1e-13
log p-value:-3.087e+01
Information Content per bp:1.719
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif9.26%
Number of Background Sequences with motif116.0
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets782.5 +/- 221.5bp
Average Position of motif in Background627.7 +/- 416.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GGAAATTCCCAG
GGAAATTCCC--
 T C A G C T A G T C G A T G C A C T G A G C A T A C G T A G T C A G T C G T A C G C T A T A C G
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCCAG
GGAAATTCCC--
 T C A G C T A G T C G A T G C A C T G A G C A T A C G T A G T C A G T C G T A C G C T A T A C G
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCCAG
GGAAATCCCC--
 T C A G C T A G T C G A T G C A C T G A G C A T A C G T A G T C A G T C G T A C G C T A T A C G
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GGAAATTCCCAG
GGGAAATCCCCN-
 A C G T T C A G C T A G T C G A T G C A C T G A G C A T A C G T A G T C A G T C G T A C G C T A T A C G
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCCAG
GGAAANCCCC--
 T C A G C T A G T C G A T G C A C T G A G C A T A C G T A G T C A G T C G T A C G C T A T A C G
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T

RBPJ/MA1116.1/Jaspar

Match Rank:6
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GGAAATTCCCAG-
---NNTTCCCANN
 T C A G C T A G T C G A T G C A C T G A G C A T A C G T A G T C A G T C G T A C G C T A T A C G A C G T
A C G T A C G T A C G T A T G C A C G T C A G T G C A T T G A C T G A C A G T C C T G A A T C G T C A G

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGAAATTCCCAG
GGGGGAATCCCC--
 A C G T A C G T T C A G C T A G T C G A T G C A C T G A G C A T A C G T A G T C A G T C G T A C G C T A T A C G
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGAAATTCCCAG
AGGGGAATCCCCT-
 A C G T A C G T T C A G C T A G T C G A T G C A C T G A G C A T A C G T A G T C A G T C G T A C G C T A T A C G
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:GGAAATTCCCAG---
-----TGCCCAGNHW
 T C A G C T A G T C G A T G C A C T G A G C A T A C G T A G T C A G T C G T A C G C T A T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GGAAATTCCCAG-
---HTTTCCCASG
 T C A G C T A G T C G A T G C A C T G A G C A T A C G T A G T C A G T C G T A C G C T A T A C G A C G T
A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G