Information for 20-TCGGCTWGCC (Motif 33)

A G C T A G T C A C T G A C T G A G T C A C G T G C T A A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C C G A T C G T A A C T G A G T C A G T C A C T G C T G A
p-value:1e-5
log p-value:-1.177e+01
Information Content per bp:1.896
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif7.41%
Number of Background Sequences with motif255.1
Percentage of Background Sequences with motif1.93%
Average Position of motif in Targets911.5 +/- 322.9bp
Average Position of motif in Background864.5 +/- 258.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD5/MA1557.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TCGGCTWGCC-
-TGTCTAGACA
 A G C T A G T C A C T G A C T G A G T C A C G T G C T A A C T G A G T C A G T C A C G T
A C G T G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TCGGCTWGCC
--NGCTN---
 A G C T A G T C A C T G A C T G A G T C A C G T G C T A A C T G A G T C A G T C
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TCGGCTWGCC--
-NNACTTGCCTT
 A G C T A G T C A C T G A C T G A G T C A C G T G C T A A C T G A G T C A G T C A C G T A C G T
A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TCGGCTWGCC-
-CGTCTAGACA
 A G C T A G T C A C T G A C T G A G T C A C G T G C T A A C T G A G T C A G T C A C G T
A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TCGGCTWGCC
--GGCGCGCT
 A G C T A G T C A C T G A C T G A G T C A C G T G C T A A C T G A G T C A G T C
A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TCGGCTWGCC
-TGTCTAGA-
 A G C T A G T C A C T G A C T G A G T C A C G T G C T A A C T G A G T C A G T C
A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TCGGCTWGCC
TWGTCTGV--
 A G C T A G T C A C T G A C T G A G T C A C G T G C T A A C T G A G T C A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

ZNF682/MA1599.1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TCGGCTWGCC---
NNAGGGGCTTGGCCNN
 A C G T A C G T A C G T A G C T A G T C A C T G A C T G A G T C A C G T G C T A A C T G A G T C A G T C A C G T A C G T A C G T
T C G A A G C T G C T A C A T G A T C G T C A G C T A G T A G C A C G T A C G T T C A G A T C G A G T C G A T C A G T C T C A G

ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TCGGCTWGCC-
-CGGCTGTTCC
 A G C T A G T C A C T G A C T G A G T C A C G T G C T A A C T G A G T C A G T C A C G T
A C G T G A T C T C A G T A C G T A G C G C A T T A C G C A G T A C G T T G A C G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:TCGGCTWGCC
CTGTCTGG--
 A G C T A G T C A C T G A C T G A G T C A C G T G C T A A C T G A G T C A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T