Information for 5-CTCTCAGA (Motif 38)

A G T C A C G T A G T C A C G T A G T C C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G C G T A A C T G C G T A A C T G
p-value:1e-4
log p-value:-9.306e+00
Information Content per bp:1.530
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif15.28%
Number of Background Sequences with motif992.7
Percentage of Background Sequences with motif7.49%
Average Position of motif in Targets686.8 +/- 364.7bp
Average Position of motif in Background635.4 +/- 446.1bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0138.1_Irf4_2/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CTCTCAGA---
AGTATTCTCGGTTGC
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C T G C G T A A C G T A C G T A C G T
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CTCTCAGA
AGCCACTCAAG
 A C G T A C G T A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C T G C G T A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CTCTCAGA--
VCCTCTCTGDDY
 A C G T A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C T G C G T A A C G T A C G T
T G A C T A G C G T A C G C A T A G T C A C G T A T G C C G A T T A C G C G A T C A G T A G T C

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CTCTCAGA---
ACCACTCTCGGTCAC
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C T G C G T A A C G T A C G T A C G T
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTCTCAGA---
TTTCTNAGAAAN
 A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C T G C G T A A C G T A C G T A C G T
A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T

Stat5b/MA1625.1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTCTCAGA----
CATTTCCCAGAAATC
 A C G T A C G T A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A G T C C T G A G C A T A G C T C G A T G A T C G A T C G T A C C T G A A C T G C T G A T C G A T C G A G C A T T A G C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTCTCAGA
AASCACTCAA-
 A C G T A C G T A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C T G C G T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTCTCAGA
GCTGTCAA-
 A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C T G C G T A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

NKX2-2/MA1645.1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CTCTCAGA--
TAACCACTCAAGAA
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C T G C G T A A C G T A C G T
G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTCTCAGA
NTGTCAN-
 A G T C A C G T A G T C A C G T A G T C C G T A A C T G C G T A
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T