Information for 5-ATGGCCAACACA (Motif 5)

C G T A A C G T A C T G A C T G A G T C A G T C C G T A C T G A A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G A G C T C G A T A C T G C T A G G T A C A G T C C G T A C G A T
p-value:1e-11
log p-value:-2.607e+01
Information Content per bp:1.899
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif4.17%
Number of Background Sequences with motif10.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets740.1 +/- 284.3bp
Average Position of motif in Background731.9 +/- 448.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATGGCCAACACA-----
AACACCAAAACAAAGGA
 C G T A A C G T A C T G A C T G A G T C A G T C C G T A C T G A A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:ATGGCCAACACA
CGTGCCAAG---
 C G T A A C G T A C T G A C T G A G T C A G T C C G T A C T G A A G T C C G T A A G T C C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:ATGGCCAACACA--
--GGACCACCCACG
 C G T A A C G T A C T G A C T G A G T C A G T C C G T A C T G A A G T C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

NFYB/MA0502.2/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----ATGGCCAACACA
CTCATTGGCCAG----
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C A G T C C G T A C T G A A G T C C G T A A G T C C G T A
A T G C A G C T A T G C G C T A A G C T C A G T C A T G C T A G A G T C G A T C T G C A T C A G A C G T A C G T A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ATGGCCAACACA-----
-NNGGCGACACCTCNNN
 C G T A A C G T A C T G A C T G A G T C A G T C C G T A C T G A A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

PB0016.1_Foxj1_1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ATGGCCAACACA----
AAAGTAAACAAAAATT
 C G T A A C G T A C T G A C T G A G T C A G T C C G T A C T G A A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

ZNF449/MA1656.1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--ATGGCCAACACA
CCAAGCCCAACCAG
 A C G T A C G T C G T A A C G T A C T G A C T G A G T C A G T C C G T A C T G A A G T C C G T A A G T C C G T A
G T A C T G A C T G C A G C T A C T A G T A G C G T A C G T A C G C T A C T G A T G A C G T A C G T C A T A C G

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---ATGGCCAACACA
CYWSTGGTCARA---
 A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C A G T C C G T A C T G A A G T C C G T A A G T C C G T A
G A T C G A C T C G T A T A G C C G A T A C T G A C T G G A C T T G A C C G T A T C A G C T G A A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:ATGGCCAACACA---
---NWAACCACADNN
 C G T A A C G T A C T G A C T G A G T C A G T C C G T A C T G A A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:ATGGCCAACACA--
--AGACCACCCASR
 C G T A A C G T A C T G A C T G A G T C A G T C C G T A C T G A A G T C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T C T G A A C T G T C G A T G A C G A T C G C T A T A G C T G A C G T A C C G T A T A G C T C A G