Supplementary Table11. RBP-mRNA interaction network
RBP	geneName	clusterNum
ALYREF	DPYSL4	9
CHTOP	DPYSL4	5
DDX3X	DPYSL4	5
HNRNPA2B1	DPYSL4	18
MBNL2	DPYSL4	5
NXF1	DPYSL4	6
RBFOX2	DPYSL4	21
TARDBP	DPYSL4	25
UPF1	DPYSL4	8
YTHDF1	DPYSL4	17
DDX3X	FOS	5
NXF1	FOS	6
YTHDC1	FOS	5
ALYREF	JDP2	10
CELF2	JDP2	21
CSTF2T	JDP2	13
DDX3X	JDP2	8
DDX54	JDP2	17
DHX9	JDP2	6
ELAVL1	JDP2	10
ELAVL3	JDP2	5
EWSR1	JDP2	18
FUS	JDP2	27
HNRNPA2B1	JDP2	8
HNRNPC	JDP2	6
HNRNPM	JDP2	8
HNRNPU	JDP2	24
MBNL2	JDP2	7
NXF1	JDP2	46
PTBP1	JDP2	10
QKI	JDP2	8
RBFOX2	JDP2	42
RC3H1	JDP2	15
RNPS1	JDP2	26
SCAF4	JDP2	5
SRSF1	JDP2	8
SRSF2	JDP2	23
SSB	JDP2	13
TAF15	JDP2	12
TARDBP	JDP2	23
UPF1	JDP2	6
YTHDC1	JDP2	6
YTHDF1	JDP2	6
ACIN1	SCD	7
ALYREF	SCD	22
CELF2	SCD	6
CHTOP	SCD	16
CSTF2T	SCD	19
DDX21	SCD	12
DDX3X	SCD	7
DDX54	SCD	13
DICER1	SCD	11
ELAVL1	SCD	15
ELAVL3	SCD	6
EWSR1	SCD	11
FIP1L1	SCD	14
FMR1	SCD	7
FUS	SCD	12
GEMIN5	SCD	10
HDLBP	SCD	10
HNRNPA1	SCD	15
HNRNPA2B1	SCD	18
HNRNPC	SCD	15
HNRNPL	SCD	14
HNRNPM	SCD	13
HNRNPU	SCD	20
IGF2BP1	SCD	8
IGF2BP2	SCD	10
IGF2BP3	SCD	9
LIN28B	SCD	10
MBNL2	SCD	6
METTL1	SCD	12
METTL14	SCD	10
METTL3	SCD	10
NXF1	SCD	12
PCBP2	SCD	19
PTBP1	SCD	15
PUS10	SCD	9
QKI	SCD	22
RBFOX2	SCD	19
RBMX	SCD	13
RC3H1	SCD	8
RNPS1	SCD	15
RRBP1	SCD	10
SCAF4	SCD	7
SCAF8	SCD	10
SLBP	SCD	14
SRSF1	SCD	13
SRSF2	SCD	16
SRSF9	SCD	13
SSB	SCD	25
TAF15	SCD	16
TARDBP	SCD	21
TIA1	SCD	13
TIAL1	SCD	5
U2AF1	SCD	12
U2AF2	SCD	12
UNK	SCD	8
UPF1	SCD	7
YBX1	SCD	7
YTHDC1	SCD	16
YTHDF1	SCD	17
YTHDF2	SCD	14
YTHDF3	SCD	12
ALYREF	TRIB1	7
CELF2	TRIB1	10
CHTOP	TRIB1	9
DDX3X	TRIB1	5
ELAVL1	TRIB1	5
ELAVL3	TRIB1	5
IGF2BP1	TRIB1	6
IGF2BP2	TRIB1	6
LIN28B	TRIB1	6
NXF1	TRIB1	6
RBFOX2	TRIB1	8
RC3H1	TRIB1	6
RNPS1	TRIB1	11
SRSF1	TRIB1	5
SRSF2	TRIB1	5
TARDBP	TRIB1	8
YTHDC1	TRIB1	6
YTHDF3	TRIB1	7
ALYREF	ZNF331	28
CELF2	ZNF331	50
CHTOP	ZNF331	16
CSTF2	ZNF331	11
CSTF2T	ZNF331	30
DDX21	ZNF331	35
DDX3X	ZNF331	9
DDX54	ZNF331	11
DHX9	ZNF331	18
ELAVL1	ZNF331	45
ELAVL3	ZNF331	18
FUS	ZNF331	26
HNRNPC	ZNF331	13
HNRNPL	ZNF331	32
HNRNPM	ZNF331	15
HNRNPU	ZNF331	29
IGF2BP1	ZNF331	8
IGF2BP2	ZNF331	11
IGF2BP3	ZNF331	12
LIN28B	ZNF331	8
MBNL2	ZNF331	7
NXF1	ZNF331	42
QKI	ZNF331	18
RBFOX2	ZNF331	32
RBMX	ZNF331	14
RNPS1	ZNF331	33
SCAF4	ZNF331	12
SCAF8	ZNF331	21
SRSF1	ZNF331	16
SRSF2	ZNF331	33
SSB	ZNF331	32
TARDBP	ZNF331	46
U2AF2	ZNF331	13
UPF1	ZNF331	15