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["Additional file 1: Table S1. Tomato cysteine proteinase information."]
[]
["Index","Clan","Family","MEROPS ID","ITAG locusa","Length","Description"]
[1,"CA","C1","C01.022","Solyc01g110110","369aa","Cysteine proteinase cathepsin F"]
[2,"CA","C1","C01.022","Solyc04g080960","363aa","Cysteine proteinase cathepsin F"]
[3,"CA","C1","C01.029","Solyc12g088670","466aa","Cathepsin B-like cysteine proteinase"]
[4,"CA","C1","C01.041","Solyc07g041900","356aa","Cathepsin L-like cysteine proteinase"]
[5,"CA","C1","C01.049","Solyc02g069100","354aa","Cathepsin B"]
[6,"CA","C1","C01.049","Solyc02g069110","354aa","Cathepsin B"]
[7,"CA","C1","C01.049","Solyc02g069090","352aa","Cathepsin B"]
[8,"CA","C1","C01.056","Solyc02g076980","345aa","Cathepsin B-like cysteine proteinase"]
[9,"CA","C1","C01.064","Solyc01g107760","470aa","Cathepsin B-like cysteine proteinase"]
[10,"CA","C1","C01.064","Solyc02g093040","363aa","Cathepsin B-like cysteine proteinase"]
[11,"CA","C1","C01.064","Solyc03g044230","379aa","Cathepsin B-like cysteine proteinase"]
[12,"CA","C1","C01.064","Solyc04g078540","472aa","Cathepsin B-like cysteine proteinase 3"]
[13,"CA","C1","C01.065","Solyc04g082710","305aa","Cathepsin B-like cysteine proteinase 3"]
[14,"CA","C1","C01.065","Solyc12g094700","331aa","Cathepsin B-like cysteine proteinase"]
[15,"CA","C1","C01.104","Solyc02g076970","281aa","Cathepsin B-like cysteine proteinase"]
[16,"CA","C1","C01.140","Solyc02g077040","345aa","Cathepsin B-like cysteine proteinase 5"]
[17,"CA","C1","C01.163","Solyc07g041920","359aa","Cathepsin L-like cysteine proteinase"]
[18,"CA","C1","C01.A03","Solyc03g111730","360aa","Cathepsin B-like cysteine proteinase"]
[19,"CA","C1","C01.A03","Solyc05g013920","358aa","Cathepsin B-like cysteine proteinase"]
[20,"CA","C1","C01.A05","Solyc11g008260","386aa","Cysteine proteinase cathepsin F"]
[21,"CA","C1","C01.A12","Solyc02g076710","500aa","Cathepsin B-like cysteine proteinase"]
[22,"CA","C1","C01.A13","Solyc02g076690","480aa","Cathepsin B-like cysteine proteinase"]
[23,"CA","C1","C01.A13","Solyc04g080880","845aa","Cathepsin B-like cysteine proteinase"]
[24,"CA","C1","C01.A16","Solyc02g076750","350aa","Cathepsin B-like cysteine proteinase"]
[25,"CA","C1","C01.A26","Solyc07g053460","342aa","Cathepsin B-like cysteine proteinase"]
[26,"CA","C1","unassigned","Solyc02g077050","341aa","Cathepsin B-like cysteine proteinase"]
[27,"CA","C1","unassigned","Solyc02g076910","351aa","Cathepsin B-like cysteine proteinase"]
[28,"CA","C1","unassigned","Solyc03g006210","346aa","Cathepsin B-like cysteine proteinase"]
[29,"CA","C1","unassigned","Solyc12g056020","341aa","Cathepsin B-like cysteine proteinase"]
[30,"CA","C1","unassigned","Solyc12g056010","340aa","Cathepsin B-like cysteine proteinase"]
[31,"CA","C1","unassigned","Solyc12g056000","340aa","Cathepsin B-like cysteine proteinase"]
[32,"CA","C2","C02.019","Solyc12g100360","2104aa","Calpain-like protein"]
[33,"CA","C12","C12.A02","Solyc09g018730","315aa","Ubiquitin carboxyl-terminal hydrolase family 1 protein"]
[34,"CA","C12","C12.A03","Solyc06g060850","232aa","Ubiquitin carboxyl-terminal hydrolase isozyme L3"]
[35,"CA","C12","C12.A03","Solyc08g078140","234aa","Ubiquitin carboxyl-terminal hydrolase isozyme L3"]
[36,"CA","C19","C19.084","Solyc07g063650","801aa","Ubiquitin carboxyl-terminal hydrolase"]
[37,"CA","C19","C19.092","Solyc01g105240","366aa","Ubiquitin carboxyl-terminal hydrolase"]
[38,"CA","C19","C19.092","Solyc04g056290","369aa","Ubiquitin carboxyl-terminal hydrolase"]
[39,"CA","C19","C19.093","Solyc09g019970","937aa","Ubiquitin carboxyl-terminal hydrolase"]
[40,"CA","C19","C19.094","Solyc12g044740","483aa","Ubiquitin carboxyl-terminal hydrolase"]
[41,"CA","C19","C19.096","Solyc07g061780","966aa","Ubiquitin carboxyl-terminal hydrolase family protein"]
[42,"CA","C19","C19.972","Solyc02g068480","551aa","Ubiquitin carboxyl-terminal hydrolase family protein"]
[43,"CA","C19","C19.A03","Solyc08g083300","931aa","Ubiquitin carboxyl-terminal hydrolase"]
[44,"CA","C19","C19.A07","Solyc04g076210","1099aa","Ubiquitin carboxyl-terminal hydrolase family protein"]
[45,"CA","C19","C19.A09","Solyc08g069050","777aa","Ubiquitin carboxyl-terminal hydrolase family protein"]
[46,"CA","C19","C19.A09","Solyc12g096430","622aa","Ubiquitin carboxyl-terminal hydrolase family protein"]
[47,"CA","C19","C19.A11","Solyc08g068810","549aa","Ubiquitin carboxyl-terminal hydrolase"]
[48,"CA","C19","C19.A12","Solyc07g005530","923aa","Ubiquitin carboxyl-terminal hydrolase"]
[49,"CA","C19","C19.A13","Solyc07g056520","686aa","Ubiquitin carboxyl-terminal hydrolase"]
[50,"CA","C19","C19.A14","Solyc01g068240","533aa","Ubiquitin carboxyl-terminal hydrolase"]
[51,"CA","C19","C19.A14","Solyc11g065210","534aa","Ubiquitin carboxyl-terminal hydrolase"]
[52,"CA","C19","C19.A16","Solyc08g005080","485aa","Ubiquitin carboxyl-terminal hydrolase"]
[53,"CA","C19","C19.A16","Solyc08g076910","714aa","Ubiquitin carboxyl-terminal hydrolase"]
[54,"CA","C19","C19.A16","Solyc10g047480","480aa","Ubiquitin carboxyl-terminal hydrolase"]
[55,"CA","C19","C19.A51","Solyc03g113370","1652aa","Inactive ubiquitin carboxyl-terminal hydrolase 54"]
[56,"CA","C19","C19.A51","Solyc06g071120","1638aa","Ubiquitin carboxyl-terminal hydrolase family protein expressed"]
[57,"CA","C19","C19.A73","Solyc05g055090","1119aa","Ubiquitin carboxyl-terminal hydrolase family protein expressed"]
[58,"CA","C19","C19.A73","Solyc06g073820","1135aa","Ubiquitin carboxyl-terminal hydrolase family protein expressed"]
[59,"CA","C19","C19.A73","Solyc10g081610","1122aa","Ubiquitin carboxyl-terminal hydrolase family protein expressed"]
[60,"CA","C19","C19.A73","Solyc11g006320","1117aa","Ubiquitin carboxyl-terminal hydrolase family protein expressed"]
[61,"CA","C19","C19.A73","Solyc11g071700","1111aa","Ubiquitin carboxyl-terminal hydrolase family protein expressed"]
[62,"CA","C19","unassigned","Solyc03g078390","1091aa","Ubiquitin carboxyl-terminal hydrolase"]
[63,"CA","C19","unassigned","Solyc04g076620","3647aa","Ubiquitin-protein ligase 1"]
[64,"CA","C19","unassigned","Solyc09g059630","314aa","UBX domain-containing protein 1"]
[65,"CA","C19","unassigned","Solyc12g098420","411aa","Ubiquitin carboxyl-terminal hydrolase"]
[66,"CA","C54","C54.011","Solyc01g006230","391aa","Cysteine protease"]
[67,"CA","C78","C78.A02","Solyc03g111660","646aa","Ufm1-specific protease 2"]
[68,"CA","C83","C83.002","Solyc09g072620","545aa","Phytochelatin synthase"]
[69,"CA","C85","C85.003","Solyc03g044370","400aa","OTU domain containing protein"]
[70,"CA","C85","unassigned","Solyc04g024710","333aa","Cysteine-type peptidase"]
[71,"CA","C85","unassigned","Solyc04g053080","331aa","OTU domain-containing protein 6B"]
[72,"CA","C85","unassigned","Solyc05g016250","230aa","Cysteine-type peptidase"]
[73,"CA","C85","unassigned","Solyc06g074220","537aa","OTU domain containing protein"]
[74,"CA","C85","unassigned","Solyc07g043510","232aa","Cysteine-type peptidase"]
[75,"CA","C85","unassigned","Solyc09g008020","341aa","Cysteine-type peptidase"]
[76,"CA","C85","unassigned","Solyc11g068660","524aa","OTU domain containing protein"]
[77,"CA","C85","unassigned","Solyc11g069810","349aa","OTU domain containing protein"]
[78,"CA","C85","unassigned","Solyc07g064590","208aa","Ubiquitin thioesterase OTU1"]
[79,"CA","C86","C86.A02","Solyc09g031770","179aa","Josephin-2"]
[80,"CD","C13","C13.001","Solyc08g065790","460aa","Vacuolar-processing enzyme (SlVPE1)"]
[81,"CD","C13","C13.001","Solyc08g065780","451aa","Vacuolar-processing enzyme (SlVPE2)"]
[82,"CD","C13","C13.001","Solyc08g065610","482aa","Vacuolar processing enzyme-1b (SlVPE3)"]
[83,"CD","C13","C13.001","Solyc08g079160","497aa","Vacuolar-processing enzyme (SlVPE4)"]
[84,"CD","C13","C13.001","Solyc12g095910","480aa","Vacuolar processing enzyme-3 (SlVPE5)"]
[85,"CD","C13","C13.001","Solyc08g065530","451aa","Vacuolar-processing enzyme-1b (SlVPE6)"]
[86,"CD","C13","C13.001","Solyc08g065570","470aa","Vacuolar-processing enzyme (SlVPE7)"]
[87,"CD","C13","C13.001","Solyc08g065590","469aa","Vacuolar-processing enzyme (SlVPE8)"]
[88,"CD","C13","C13.001","Solyc08g065600","417aa","Vacuolar-processing enzyme-3 (SlVPE9)"]
[89,"CD","C13","C13.001","Solyc08g065690","463aa","Vacuolar processing enzyme-1b (SlVPE10)"]
[90,"CD","C13","C13.001","Solyc08g065710","483aa","Vacuolar-processing enzyme (SlVPE11)"]
[91,"CD","C13","C13.001","Solyc08g065720","428aa","Vacuolar processing enzyme-1b (SlVPE12)"]
[92,"CD","C13","C13.001","Solyc08g065740","446aa","Vacuolar-processing enzyme (SlVPE13)"]
[93,"CD","C13","C13.001","Solyc08g065750","450aa","Vacuolar-processing enzyme (SlVPE14)"]
[94,"CD","C13","C13.005","Solyc10g007850","371aa","Gpi-anchor transamidase"]
[95,"CD","C14","C14.034","Solyc10g081300","320aa","Metacaspase 7"]
[96,"CD","C14","C14.047","Solyc01g088710","368aa","Metacaspase"]
[97,"CD","C14","C14.047","Solyc01g105300","361aa","Metacaspase"]
[98,"CD","C14","C14.047","Solyc01g105310","362aa","Metacaspase"]
[99,"CD","C14","C14.047","Solyc01g105320","355aa","Metacaspase"]
[100,"CD","C14","C14.047","Solyc03g094160","361aa","Metacaspase"]
[101,"CD","C14","C14.047","Solyc05g052130","362aa","Metacaspase"]
[102,"CD","C14","C14.049","Solyc09g098150","416aa","Metacaspase 7"]
[103,"CD","C14","unassigned","Solyc00g130800","385aa","Peptidase C14 caspase catalytic subunit p20"]
[104,"CD","C50","C50.005","Solyc01g104490","2128aa","Separin"]
[105,"CE","C48","C48.022","Solyc01g066830","515aa","Sentrin-specific protease 2"]
[106,"CE","C48","C48.022","Solyc12g099530","522aa","Sentrin-specific protease 2"]
[107,"CE","C48","C48.A03","Solyc05g005310","151aa","NEDD8-specific protease 2"]
[108,"CE","C48","C48.A04","Solyc04g026200","437aa","Sentrin-specific protease 2"]
[109,"CE","C48","C48.A04","Solyc05g005630","544aa","Sentrin/SUMO-specific protease 15"]
[110,"CE","C48","C48.A06","Solyc11g017040","855aa","Sentrin specific protease 1b"]
[111,"CE","C48","unassigned","Solyc00g007260","460aa","Sentrin-specific protease 7"]
[112,"CE","C48","unassigned","Solyc00g007290","219aa","Ulp1 protease family C-terminal catalytic domain containing protein"]
[113,"CE","C48","unassigned","Solyc01g059760","752aa","Ulp1 protease family C-terminal catalytic domain containing protein"]
[114,"CE","C48","unassigned","Solyc03g083850","555aa","Ulp1 protease family C-terminal catalytic domain containing protein"]
[115,"CE","C48","unassigned","Solyc06g075240","1066aa","Ulp1 protease family C-terminal catalytic domain containing protein"]
[116,"CE","C48","unassigned","Solyc09g059490","802aa","Ulp1 protease family C-terminal catalytic domain containing protein"]
[117,"CE","C48","unassigned","Solyc11g072220","479aa","Sentrin specific protease 1b"]
[118,"CE","C48","unassigned","Solyc12g062880","871aa","Ulp1 protease family C-terminal catalytic domain containing protein"]
[119,"CE","C48","unassigned","Solyc01g105830","963aa","Sentrin-specific protease"]
[120,"CE","C48","unassigned","Solyc10g047840","1038aa","Ulp1 protease family C-terminal catalytic domain containing protein"]
[121,"CF","C15","C15.A02","Solyc01g100970","219aa","Pyrrolidone-carboxylate peptidase"]
[122,"CF","C15","C15.A02","Solyc05g005200","216aa","Pyrrolidone-carboxylate peptidase "]
[123,"CP","C97","non-peptidase homologue","Solyc02g082060","213aa","PPPDE peptidase domain-containing protein 1"]
[124,"CP","C97","unassigned","Solyc01g109430","249aa","PPPDE peptidase domain-containing protein 1"]
[125,"CP","C97","unassigned","Solyc03g008010","237aa","PPPDE peptidase domain-containing protein 1"]
[126,"CP","C97","unassigned","Solyc03g117100","225aa","PPPDE peptidase domain-containing protein 1"]
[127,"CP","C97","unassigned","Solyc04g080030","247aa","PPPDE peptidase domain-containing protein 1"]
[128,"CP","C97","unassigned","Solyc08g078220","221aa","PPPDE peptidase domain-containing protein 1"]
[129,"CP","C97","unassigned","Solyc09g061310","276aa","PPPDE peptidase domain containing 2a"]
[130,"CP","C97","unassigned","Solyc12g006880","224aa","PPPDE peptidase domain-containing protein 1"]
[131,"CP","C97","unassigned","Solyc12g089060","247aa","PPPDE peptidase domain-containing protein 1"]
[132,"PB","C44","C44.003","Solyc03g063560","1621aa","Glutamate synthase (Ferredoxin)"]
[133,"PB","C44","C44.975","Solyc01g087870","677aa","Glucosamine--fructose-6-phosphate aminotransferase"]
[134,"PB","C44","C44.976","Solyc04g055210","199aa","Asparagine synthetase"]
[135,"PB","C44","C44.976","Solyc06g007180","590aa","Asparagine synthase (Glutamine-hydrolyzing)"]
[136,"PB","C44","C44.A01","Solyc01g088360","551aa","Glucosamine--fructose-6-phosphate aminotransferase"]
[137,"PB","C44","C44.A03","Solyc01g110520","577aa","Glucosamine--fructose-6-phosphate aminotransferase"]
[138,"PB","C44","unassigned","Solyc03g006490","295aa","Aluminum-induced protein-like"]
[139,"PB","C44","unassigned","Solyc01g079880","236aa","Asparagine synthetase"]
[140,"PB","C44","unassigned","Solyc02g078500","255aa","Aluminum-induced protein-like"]
[141,"PB","C44","unassigned","Solyc02g078380","253aa","Aluminum-induced protein-like protein"]
[142,"PB","C44","unassigned","Solyc03g083440","2210aa","Glutamate synthase"]
[143,"PB","C44","unassigned","Solyc04g055200","559aa","Asparagine synthase"]
[144,"PB","C44","unassigned","Solyc09g082780","251aa","Asparagine synthetase B"]
[145,"PB","C44","unassigned","Solyc12g013700","254aa","Aluminum-induced protein-like protein"]
[146,"PB","C45","unassigned","Solyc12g056150","365aa","Peptidase C45 acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase"]
[147,"PC","C26","C26.002","Solyc07g062270","340aa","Gamma-glutamyl hydrolase 2"]
[148,"PC","C26","C26.002","Solyc10g007410","344aa","Gamma-glutamyl hydrolase 2"]
[149,"PC","C26","C26.002","Solyc07g062280","337aa","Gamma-glutamyl hydrolase 2"]
[150,"PC","C26","C26.A05","Solyc01g106060","242aa","Glutamine amidotransferase class-I"]
[151,"PC","C26","C26.A05","Solyc07g006090","261aa","GMP synthase"]
[152,"PC","C26","C26.A07","Solyc08g081150","536aa","GMP synthase"]
[153,"PC","C26","C26.A09","Solyc12g010180","283aa","Anthranilate synthase"]
[154,"PC","C26","C26.A10","Solyc02g086300","427aa","Glutamine amidotransferase"]
[155,"PC","C26","C26.A10","Solyc03g034320","424aa","Class I glutamine amidotransferase"]
[156,"PC","C26","C26.A29","Solyc06g016800","310aa","CTP synthase"]
[157,"PC","C26","unassigned","Solyc04g049360","902aa","4-amino-4-deoxychorismate synthase component I"]
[158,"PC","C26","unassigned","Solyc07g064810","588aa","Imidazole glycerol phosphate synthase subunit hisF"]
[159,"PC","C26","unassigned","Solyc01g056850","599aa","CTP synthase"]
[160,"PC","C26","unassigned","Solyc01g079650","562aa","CTP synthase-like protein"]
[161,"PC","C26","unassigned","Solyc02g082190","600aa","CTP synthase"]
[162,"PC","C26","unassigned","Solyc03g115630","426aa","Carbamoyl-phosphate synthase small chain"]
[163,"PC","C26","unassigned","Solyc05g008910","422aa","Glutamine amidotransferase"]
[164,"PC","C26","unassigned","Solyc11g069290","251aa","Glutamine amidotransferase subunit pdxT"]
[165,"PC","C56","C56.972","Solyc02g076720","1459aa","Phosphoribosylformylglycinamidine synthase"]
[166,"PC","C56","C56.A01","Solyc02g081400","388aa","Intracellular protease PfpI family protein expressed"]
[167,"PC","C56","non-peptidase homologue","Solyc07g062610","391aa","4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme ThiJ"]
[]
["aITAG, the International Tomato Annotation Group release version 2.3."]