{"text_format":"3","workbook":"xls","n_sheets":3,"sheets":["Sheet1","Sheet2","Sheet3"],"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"Sheet1","index":0,"n_rows":348,"n_cols":9,"rows_kept":348,"merged":[[3,0,3,8],[25,0,25,8],[26,0,26,8],[58,0,58,8],[59,0,59,8],[70,0,70,8],[71,0,71,8],[80,0,80,8],[81,0,81,8],[111,0,111,8],[112,0,112,8],[132,0,132,8],[133,0,133,8],[149,0,149,8],[150,0,150,8],[182,0,182,8],[183,0,183,8],[208,0,208,8],[209,0,209,8],[219,0,219,8],[220,0,220,8],[245,0,245,8],[246,0,246,8],[262,0,262,8],[263,0,263,8],[309,0,309,8],[310,0,310,8],[333,0,333,8],[334,0,334,8],[347,0,354,8]],"flags":["formulas_cached_only"]}
["Additional file 6: Table S5. Identification of differentially expressed proteins in the SlVPE3 RNAi tomato fruit using iTRAQ-based quantitative proteomic analysis."]
[]
["Accession numbera","Protein description","Trival name","Abundance ratio (SlVPE3:WT)                 at 41 dpab","±SD","Abundance ratio (SlVPE3:WT)                 at 44 dpac","±SD","Peptides (95%)d","% Sequence coveragee"]
["Amino acid metabolic process"]
["Solyc00g011880","AIG2-like protein",null,1.56,0.45,4.98,3.89,2,18.59]
["Solyc01g079880","Asparagine synthetase","AsnS",0.68,0.03,0.49,0.07,11,54.03]
["Solyc01g080280","Glutamine synthetase","GluS",0.74,0.02,0.3,0.08,12.5,33.44]
["Solyc01g094790","Cysteine synthase A","CysK",0.37,0.03,0.59,0.02,3,19.05]
["Solyc01g102660","Maleylacetoacetate isomerase","MAAI",0.36,0.05,0.55,0.02,21,61.71]
["Solyc01g107700","Kynurenine formamidase","KFA",0.49,0.05,0.68,0.14,7,29.63]
["Solyc01g112280","Succinyl-diaminopimelate desuccinylase","dapE",0.15,0.03,0.13,0.03,13.5,50.89]
["Solyc02g091560","Serine hydroxymethyltransferase","SHMT",2.39,0.29,1.34,0.2,41.5,56.85]
["Solyc04g054310","Alanine-glyoxylate aminotransferase","AGXT",0.45,0.08,0.86,0.08,17,42.18]
["Solyc04g076320","Argininosuccinate lyase","ASL",2.7,1.67,3.61,2.64,5,10.48]
["Solyc07g032740","Aspartate aminotransferase","AspAT",0.4,0.03,0.37,0.01,30.5,67.79]
["Solyc08g014130","2-isopropylmalate synthase 1","IPMS",0.22,0.08,0.43,0.04,55.5,72.96]
["Solyc08g065220","Glycine dehydrogenase P protein","GLDP",2.25,0.06,1.41,0.14,17,23.98]
["Solyc09g082650","Acireductone dioxygenase","ARD",0.5,0.04,0.97,0.02,14.5,36.36]
["Solyc09g092380","Adenosylhomocysteinase","SAHH",0.25,0.04,0.74,0.03,72.5,62.68]
["Solyc10g012370","Cysteine synthase","Cys",0.47,0,1.16,0.24,4.5,19.52]
["Solyc11g009080","Phospho-2-dehydro-3-deoxyheptonate aldolase 1","DHAPS",1.05,0.13,2.4,0.46,10,22.8]
["Solyc11g011920","Glutamate decarboxylase","GAD2",1.54,0.07,2.16,0.44,13,28.72]
["Solyc11g012970","Aminoacylase-1","ACY-1",0.24,0.03,0.13,0.05,9.5,43.67]
["Solyc12g005860","3-isopropylmalate dehydratase large subunit","LeuC",0.41,0.06,0.62,0.01,83,61.27]
["Solyc12g088220","Branched-chain-amino-acid aminotransferase","BCAT",0.25,0.03,1.9,0.17,9,33.29]
[]
["Carbohydrate metabolic process"]
["Solyc01g060020","Beta-glucanase","bgl",0.76,0.02,0.49,0.08,5.5,19.17]
["Solyc01g107830","UDP-glucosyltransferase family 1 protein","UGT1",0.39,0.01,0.79,0.01,8,21.03]
["Solyc01g111120","Triosephosphate isomerase","TPI",1.09,0.05,0.5,0.04,18,46.01]
["Solyc02g070020","UDP-glucosyltransferase","UGT",0.16,0.03,0.73,0.03,14.5,25.88]
["Solyc03g006870","Phosphoglucomutase","PGM",2.01,0.96,0.99,0.09,4.5,13.92]
["Solyc03g065340","Glycogen/starch/alpha-glucan phosphorylase","glgP",0.79,0.09,0.32,0.02,41,45.55]
["Solyc03g083910","Acid beta-fructofuranosidase","AI",0.34,0.07,0.19,0.01,79.5,47.84]
["Solyc03g111690","Pectate lyase","pel",0.2,0.03,1.29,0.02,17.5,33.13]
["Solyc03g123830","Phosphoglycerate dehydrogenase","PHGDH",4.19,0.21,1.57,0.04,18.5,35.24]
["Solyc04g011510","Triosephosphate isomerase","TIM",0.99,0.08,0.47,0.01,28,63.12]
["Solyc04g045340","Phosphoglucomutase","PGM",0.85,0.06,0.49,0.07,47.5,64.32]
["Solyc04g049070","Alpha glucosidase II","AGL2",0.37,0.1,0.34,0,11.5,13.79]
["Solyc04g076880","Phosphoenolpyruvate carboxykinase (ATP)","PCKA",0.25,0.03,0.81,0.03,21.5,39.8]
["Solyc04g082880","Diphosphate-fructose-6-phosphate 1-phosphotransferase","PfpB",0.48,0.05,0.77,0.15,8,39.12]
["Solyc05g007070","Alpha amylase 2 (IC)","amy2",2.35,0.58,1.73,0.19,1.5,4.04]
["Solyc05g048760","Phosphomannomutase 2","PMM2",2.08,0.5,0.76,0,8.5,38.49]
["Solyc06g076650","Enolase","Eno",1.36,0.39,2.12,0.26,5,22.94]
["Solyc07g042550","Sucrose synthase","SuSy3",2.72,0.04,2.14,0.37,14,38.75]
["Solyc07g066600","Phosphoglycerate kinase","PGK",0.8,0.05,0.49,0.01,74.5,83.79]
["Solyc08g005770","Alcohol acetyltransferase","AAT1",0.21,0,0.9,0.04,30,51.47]
["Solyc08g006330","UDP-glucose salicylic acid glucosyltransferase","gtsatom",0.37,0.17,0.61,0.06,9,20.84]
["Solyc09g009020","Enolase","Eno",0.76,0.03,0.44,0.04,122,80.29]
["Solyc10g007600","L-lactate dehydrogenase","LDH",2.15,0.29,0.58,0.21,16,50.68]
["Solyc10g079860","Beta-1,3-glucanase","bglH",1.25,0.16,2.05,0.16,1,3.78]
["Solyc10g085230","UDP-glucosyltransferase","UGT",0.25,0.05,1.43,0.09,6,17.37]
["Solyc10g085880","UDP-glucosyltransferase family 1 protein","UGT1",0.31,0,1.24,0.04,59.5,60.76]
["Solyc11g008720","Beta-glucosidase G4","BGLUG4",0.42,0.13,0.81,0,3.5,11.81]
["Solyc11g018500","Beta-galactosidase","GLB",0.34,0.06,0.71,0,3.5,10.79]
["Solyc11g069010","Alpha-L-fucosidase 1","FUCA1",2.3,0.72,1.41,0.29,1,4.44]
["Solyc12g009300","Sucrose synthase","SuSy1",2.37,0.16,4.25,1,51,49.07]
["Solyc12g099200","Cell-wall Invertase inhibitor","CIF1",3.03,0.04,1.37,0.08,7,45.03]
[]
["Cell wall organization or biogenesis"]
["Solyc01g088590","Pectinesterase inhibitor","PMEI",0.4,0.22,0.51,0.11,2,9.68]
["Solyc01g112080","LysM-domain GPI-anchored protein","LYM",2.64,1.09,1.41,0.31,1,3.77]
["Solyc05g050130","Acidic chitinase","CHIA",3.93,0.02,4.13,1.02,6.5,27.91]
["Solyc06g051800","Expansin","EXP1",0.31,0.06,0.51,0.04,1.5,4.98]
["Solyc07g064170","Pectinesterase","PME1.9",0.43,0.06,0.42,0.01,116,48.08]
["Solyc07g064180","Pectinesterase","PME2.1",0.43,0.14,0.65,0.06,4,31]
["Solyc07g065090","Polygalacturonase inhibitor protein","PGIP",2.07,0.1,0.95,0.05,11,20.8]
["Solyc08g005800","Pectinacetylesterase like protein (Fragment)",null,0.67,0.01,0.5,0.02,21,65.33]
["Solyc10g055810","Endochitinase (Chitinase)","CHI9",0.34,0.05,0.45,0.04,3.5,25.77]
["Solyc10g080210","Polygalacturonase A","LePG",0.03,0,0.45,0.03,73,55.36]
[]
["Cellular component organization or biogenesis"]
["Solyc01g068600","Paladin-like protein",null,0.46,0.3,1.35,0.01,2,15.9]
["Solyc01g099410","Histone H2A","H2A.1",2.11,0.2,0.67,0.04,4.5,29.11]
["Solyc03g097190","Cingulin-like","CGNL",1.16,0.18,7.08,5.98,1.5,3.66]
["Solyc04g077020","Tubulin alpha-3 chain","TUBA3",2.01,0.05,1.01,0.13,39.5,61.45]
["Solyc09g010400","Histone H2A","H2A",3.16,2.04,0.89,0.18,3.5,36.89]
["Solyc09g066100","Histone H1","H1",2.1,0.13,1.4,0.06,7.5,29.44]
["Solyc10g008910","Histone H3","H3",3.59,0.31,1.2,0.17,4.5,27.2]
["Solyc10g080940","Tubulin beta chain","TUBB",2.43,0.01,1.21,0.29,4,45.13]
[]
["Cellular metabolic process"]
["Solyc01g005560","Isocitrate dehydrogenase","IDH",0.5,0.01,1.15,0.14,36,62.65]
["Solyc01g081250","Glutathione-S-transferase","GST",79.77,10.59,68.73,5.06,0.5,17.02]
["Solyc01g081270","Glutathione-S-transferase","GST",25.33,3.25,21.11,2.23,8,27.35]
["Solyc01g097880","Deaminase",null,0.43,0,0.93,0.03,9.5,43.28]
["Solyc01g108560","Acetyl esterase","AES",0.29,0.15,0.76,0.14,3,25.25]
["Solyc02g081880","Molybdenum cofactor sulfurase protein-like","MOCOS",0.46,0.04,0.81,0.11,4.5,22.58]
["Solyc03g025320","Hydroxycinnamoyl transferase","AAT2",2.18,0.09,1.39,0.2,6,18.8]
["Solyc03g025850","Remorin 1","rem-1",2.16,0.09,1.98,0.07,16.5,57.87]
["Solyc03g117430","Cobalamin synthesis protein P","CbiP",0.34,0.06,0.5,0.02,14.5,29.2]
["Solyc04g040180","S-adenosylmethionine-dependent methyltransferase (Fragment)","SDM",0.49,0.02,0.86,0.02,21,70.08]
["Solyc05g005490","Carbonic anhydrase","CA1",0.42,0.06,0.65,0.01,31,62.69]
["Solyc05g052480","Multiple inositol polyphosphate phosphatase","MIPP",0.47,0.08,0.93,0.09,2,5.78]
["Solyc06g035870","Membrane-associated progesterone receptor component 1 ","PGRMC1",0.53,0.06,0.43,0.09,11,57.5]
["Solyc07g049530","1-aminocyclopropane-1-carboxylate oxidase","ACO1",0.23,0.01,1.9,0.17,36,66.03]
["Solyc07g056420","Glutathione-S-transferase-like protein","GSTL",1.27,0.33,0.45,0.03,20,39.32]
["Solyc07g056510","Glutathione-S-transferase","GST",1.45,0.14,0.46,0.02,3.5,29.91]
["Solyc07g061790","SOUL Heme-binding protein","HEBP",2.58,0.27,1.07,0.09,20,45.85]
["Solyc07g062530","Phosphoenolpyruvate carboxylase 2","PPC2",1.02,0.16,0.49,0.04,122.5,68.83]
["Solyc07g062650","Malate dehydrogenase","mMDH",2.03,0.14,1.15,0.06,48.5,71.54]
["Solyc08g066240","Pyridoxal phosphate-dependent decarboxylase","PLPDCX",0.04,0,0.87,0.02,20,38.85]
["Solyc09g007920","Phenylalanine ammonia-lyase","PAL",5.39,4.07,11.63,8.69,6.5,11.31]
["Solyc09g064720","Dienelactone hydrolase family protein","DLH",0.73,0.01,0.45,0,10.5,58.37]
["Solyc09g089580","1-aminocyclopropane-1-carboxylate oxidase-like protein","ACO3",0.2,0.01,0.87,0.01,64,60.89]
["Solyc09g090140","Malate dehydrogenase","MDH",0.78,0,0.43,0.06,63.5,74.7]
["Solyc10g076510","Pyruvate decarboxylase","PDC",0.55,0.13,0.44,0.04,20.5,39.06]
["Solyc10g079610","Strictosidine synthase family protein","STR",0.45,0.02,0.61,0.07,3.5,14.51]
["Solyc10g085830","O-methyltransferase 1","OMT",0.48,0.02,0.83,0.05,21.5,54.57]
["Solyc11g066290","Icc family phosphohydrolase","ICC",0.46,0.03,0.46,0.01,10,27.56]
["Solyc12g011310","Glutathione-S-transferase","GST",1.68,0.03,0.21,0.02,16.5,48.4]
[]
["Gene expression"]
["Solyc01g080510","PH-response transcription factor pacC","pacC",0.91,0.35,2.04,0.79,1.5,10.33]
["Solyc01g097760","Ribosomal protein L7a","RPL7A",2.36,0.52,3.38,0.42,1.5,44.58]
["Solyc01g098000","Elongation factor-like protein","EFL",2.89,1.02,0.58,0.3,14,67.22]
["Solyc01g100760","Susceptibility homeodomain transcription factor (Fragment)",null,0.45,0.06,1.1,0.03,8,44.81]
["Solyc01g112060","NmrA family protein","nmrA",2.77,0.11,1.23,0.06,2,8.42]
["Solyc02g069260","ARGONAUTE 1","AGO1",2.63,0.1,1.93,0.08,24,28.17]
["Solyc02g093340","Heterogeneous nuclear ribonucleoprotein A3","HNRNPA3",2.27,0.73,0.64,0.01,1.5,6.3]
["Solyc04g073990","Annexin","AN34",0.53,0.01,0.44,0.01,47,63.06]
["Solyc05g008010","60S ribosomal protein L31","RPL31",1.07,0.32,0.5,0.21,1.5,33.75]
["Solyc05g055770","Basic leucine zipper and W2 domain-containing protein 2","BZW2",1.3,0.15,2.34,0.44,8,21.29]
["Solyc06g009400","Nitrogen regulatory protein P-II","GLB1",0.73,0.03,0.49,0.01,12,47.99]
["Solyc06g071790","Elongation factor Tu","EFTu",1.2,0.02,0.47,0.06,9,50]
["Solyc07g006560","Hypersensitive response assisting protein","hrap",4.76,0.63,0.83,0.03,4.5,25.17]
["Solyc07g006570","S8-RNase (Fragment)",null,2.56,0.57,1.24,0.02,9,33.74]
["Solyc07g016150","Elongation factor 1-beta","EF1B",2.06,0.32,0.33,0,20,68.26]
["Solyc07g044930","ATP-dependent RNA helicase A",null,1.38,0.06,7.2,4.71,0,1.38]
["Solyc11g011130","THO complex subunit 4","THO4",3.43,2.38,14.68,13.63,3.5,22.79]
["Solyc11g069700","Elongation factor 1-alpha","EF1A",3.47,0.22,1.14,0.01,4,60.63]
["Solyc11g072190","Elongation factor beta-1","EF1B",3.44,0.22,0.49,0.04,38,83.7]
[]
["Lipid metabolic process"]
["Solyc01g006450","Enoyl-(acyl-carrier-protein) reductase (NADH)","ENR/fabI",0.62,0.25,0.29,0.18,5.5,25.39]
["Solyc01g006540","Lipoxygenase","LOXC",0.37,0.01,0.74,0.02,36.5,40.18]
["Solyc01g088090","Hydrolase alpha/beta fold family protein",null,0.26,0.11,1.14,0.01,7.5,21.49]
["Solyc01g098110","Diacylglycerol acyltransferase","DGAT",0.32,0.03,0.81,0.05,8,16.3]
["Solyc01g099160","Lipoxygenase","CEVI34",0.49,0.03,0.92,0.06,34,47.39]
["Solyc01g099190","Lipoxygenase","LOXB",0.09,0.02,0.67,0.01,179,70.98]
["Solyc01g111260","Phosphatidylinositol-specific phospholipase c","PLC",2.45,0.44,1.99,0.33,9,28.62]
["Solyc02g065240","Hydrolase alpha/beta fold family protein",null,0.05,0,0.43,0.02,12.5,58.33]
["Solyc03g005020","Lipase",null,0.3,0.05,0.44,0.03,7,20.25]
["Solyc06g054510","Acyl carrier protein","ACP",0.62,0.18,0.48,0.03,2.5,22.79]
["Solyc07g061990","Solanesyl diphosphate synthase","SDPS",0.35,0.03,0.57,0.03,7.5,31.91]
["Solyc09g091470","3-ketoacyl CoA thiolase 2","fadI",0.41,0.04,0.59,0.01,43.5,67.2]
["Solyc10g080900","3-oxoacyl-reductase","fabG",0.31,0.05,0.95,0,31,68.29]
["Solyc12g011160","Enoyl-CoA-hydratase","ECHS",1.02,0.14,2.3,0.69,7,24.87]
["Solyc12g017460","GDSL esterase/lipase ",null,2.13,0.04,2.28,0.12,4,10.57]
[]
["Oxidation-reduction process"]
["Solyc02g087110","Alpha-dioxygenase","DOX",0.38,0.06,3.06,0.07,14.5,27.69]
["Solyc03g082600","Cytochrome b5","Cyt-b5",0.46,0.08,0.55,0.1,6,27.64]
["Solyc03g115220","Cytochrome P450","CYP450",1.49,0.01,4.55,0.1,2.5,9.34]
["Solyc03g120720","Protein disulfide isomerase L-3b","PDIL-3b",0.43,0.09,0.26,0.06,5.5,12.08]
["Solyc03g121040","Taurine catabolism dioxygenase TauD/TfdA family",null,0.46,0.03,0.83,0.06,8.5,33.74]
["Solyc04g049450","Protein disulfide isomerase L-2","PDIL-2",0.51,0.06,0.3,0.01,11,28.16]
["Solyc04g071890","Peroxidase 4","POD4",2.72,0.3,1.77,0.26,18,36.07]
["Solyc04g074640","L-ascorbate peroxidase","APX",3.14,0.87,2.51,0.24,4,12.03]
["Solyc05g005460","Nucleoredoxin 2","Nxn2",5.19,1.18,3.4,0.62,15.5,33.39]
["Solyc05g056400","Protein disulfide isomerase","PDI",0.43,0.01,0.29,0.11,6.5,10.4]
["Solyc06g005940","Protein disulfide isomerase","PDI",0.3,0.01,0.34,0.01,32,43.99]
["Solyc06g059740","Alcohol dehydrogenase 2","ADH2",0.19,0.01,0.39,0.01,57,54.82]
["Solyc06g060290","Protein disulfide isomerase","PDI",0.51,0.01,0.26,0.01,20.5,45.89]
["Solyc07g047800","Short-chain dehydrogenase/reductase family protein","SDR",0.21,0.02,0.63,0.01,25,68.8]
["Solyc07g049450","Thioredoxin/protein disulfide isomerase","TRX_PDI",0.74,0,0.39,0.03,21,49.54]
["Solyc07g049690","Cytochrome P450","CYP450",0.53,0.04,0.47,0.04,13,31.72]
["Solyc08g005630","Glucose-methanol-choline oxidoreductase",null,0.09,0.01,0.73,0.02,33.5,36.56]
["Solyc09g066150","Cytochrome P450","CYP450",0.19,0.04,1.14,0.04,24,43.63]
["Solyc10g051020","Cytochrome P450","CYP450",2.56,0.79,1.43,0.17,1.5,6.88]
["Solyc10g083650","Peroxiredoxin ahpC/TSA family","ahpC",0.36,0.05,0.52,0.01,23.5,66.23]
["Solyc11g010960","Alcohol dehydrogenase","ADH",18.66,2.81,6.13,0.79,12.5,30.92]
["Solyc11g011250","Dehydroascorbate reductase","DHAR2",1.15,0.02,0.43,0.04,12.5,50.19]
["Solyc11g042640","Rieske (2Fe-2S) domain protein",null,2.83,1.08,4.1,1.19,5.5,31.52]
["Solyc11g066390","Superoxide dismutase","SODCP.2",0.48,0.05,0.4,0.07,15,53.92]
["Solyc11g069400","Protein disulfide isomerase L-2","PDIL-2",0.25,0.06,0.19,0.02,5,13.88]
["Solyc11g069800","Allene oxide synthase","AOS",0.27,0.05,0.33,0.02,20,39.22]
["Solyc12g005630","Cytochrome b6-f complex iron-sulfur subunit","petC",2.28,0.5,1.44,0.19,8.5,35.29]
["Solyc12g010950","Alcohol dehydrogenase zinc-containing","ZADH",2.44,0.42,1.8,0.42,9.5,42.2]
["Solyc12g013690","Monooxygenase FAD-binding protein",null,0.36,0.01,0.97,0.04,12,34.4]
["Solyc12g094620","Catalase","CAT1",0.82,0.04,0.31,0.01,55.5,65.85]
["Solyc12g099430","Epoxide hydrolase 1","EPHX1",1.75,0.03,2.24,0.23,22.5,60.22]
[]
["Photosynthesis"]
["Solyc00g230080","Photosystem II D2 protein","psbD2",3.28,1.55,2.97,1.43,2,23.73]
["Solyc01g007500","Photosystem II CP47 chlorophyll apoprotein","psbB",6.01,0.72,5.25,0.05,14,27.57]
["Solyc01g007520","Photosystem II reaction center protein H","psbH",5.71,1.34,1.99,0.59,2,22.6]
["Solyc01g105030","Chlorophyll a-b binding protein, chloroplastic","CAP10A",5.38,0.64,1.29,0.23,2,26.56]
["Solyc02g065400","Oxygen-evolving enhancer protein 1 of photosystem II","psbO",2.39,0.36,2.16,0.09,15.5,60.49]
["Solyc02g069460","Photosystem I reaction center subunit III","psaF",5.49,3.3,2.21,1.13,9.5,39.91]
["Solyc02g071030","Chlorophyll a/b binding protein","CABP",4.64,1.5,3.25,1.08,1,36.6]
["Solyc02g079950","Oxygen-evolving enhancer protein 3","psbQ",4.88,0.98,6.57,4.3,7,27.17]
["Solyc02g090030","Oxygen-evolving enhancer protein 1 of photosystem II","psbO",1.5,0.18,2.79,0.62,14.5,58.26]
["Solyc03g005770","Chlorophyll a-b binding protein 3C-like","CAP3CL",7.77,1.69,2.17,0.96,6.5,38.57]
["Solyc06g054260","Photosystem I reaction center subunit II","psaD",4.87,0.43,4.68,0.06,9,48.08]
["Solyc06g063370","Chlorophyll a-b binding protein 1A, chloroplastic","CAP1A",9.49,1.47,5.87,0.99,7,27.8]
["Solyc06g066620","Threonine endopeptidase",null,2.25,0.61,3.41,0.25,2,16.67]
["Solyc06g076790","Thylakoid soluble phosphoprotein TSP9 protein","TSP9",1.88,0.29,3.14,0.39,1.5,11.32]
["Solyc07g047850","Chlorophyll a-b binding protein 4, chloroplastic","CAP4",4.36,0.7,7.4,3.56,4.5,36.98]
["Solyc07g054290","Photosystem II family protein","SYFP",1.52,0.08,2.84,0.38,5,36.55]
["Solyc07g066310","photosystem II polypeptide","psbR",5.09,3.23,0.61,0.27,2,16.66]
["Solyc08g013670","Photosystem I reaction center subunit","psa",7.2,0.89,0.79,0.31,3,21.78]
["Solyc09g011080","Ribulose-1 5-bisphosphate carboxylase/oxygenase activase 1","RCA1",2.41,0.34,0.4,0.08,7.5,43.28]
["Solyc09g014520","Chlorophyll a-b binding protein 6A, chloroplastic","CAP6A",9.2,0.08,3.79,0.91,7,25.97]
["Solyc09g015290","Photosystem I P700 chlorophyll a apoprotein A1","psaA",3.83,0.58,1.3,0.05,1,11.25]
["Solyc09g063130","Photosystem I reaction center subunit IV A","psaE",3.34,0.09,2.33,0.4,6,49.28]
["Solyc10g007690","Chlorophyll a-b binding protein 8, chloroplastic","CAP8",2.8,0.51,1.71,0.69,1.5,14.47]
["Solyc10g008740","Magnesium chelatase ATPase subunit I","chlI",2.18,0.17,1.18,0.23,5,13.81]
[]
["Pigment metabolic process"]
["Solyc02g083860","Flavanone 3-hydroxylase","FLS",1.44,0.01,5.48,0.33,14,44.2]
["Solyc03g031860","Phytoene synthase 1","PSY1",0.45,0.03,1.36,0.14,8.5,29.37]
["Solyc04g050930","Violaxanthin de-epoxidase","VDE",2.38,0.51,2.8,1.03,1,3.14]
["Solyc05g052240","Chalcone-flavonone isomerase","CHI",1.33,0.24,5.73,1.52,9.5,51.29]
["Solyc05g053550","Chalcone synthase","CHS2",0.77,0.25,16.83,0.08,10,20.44]
["Solyc08g074620","Polyphenol oxidase","PPO",2.2,0.15,1.2,0.11,6.5,15.5]
["Solyc09g059170","Anthocyanidin 3-O-glucosyltransferase","UFGT",1.38,0.18,2.77,0.04,1.5,14.61]
["Solyc10g081650","Carotenoid isomerase, chloroplastic","CRTISO",0.4,0.05,0.56,0.05,15,24.88]
["Solyc11g013110","Anthocyanidin synthase","ANS",1.59,0.1,9.73,1.34,14,36.51]
[]
["Protein metabolic process"]
["Solyc01g028810","Chaperonin Cpn60","Cpn60",0.47,0.02,0.54,0.02,76,66.03]
["Solyc01g079610","DNAJ chaperone","DNAJ",2.22,0.2,2.54,0.29,5,21.88]
["Solyc01g097770","Serine/threonine protein kinase","STK",2.04,0.82,1.72,0.59,2.5,3.09]
["Solyc02g088610","ATP-dependent chaperone ClpB","ClpB",0.59,0.02,0.45,0.03,87.5,59.8]
["Solyc03g082420","Small heat shock protein, chloroplastic","Hsp21",0.43,0.01,0.03,0.01,38.5,61.91]
["Solyc03g111720","Peptide methionine sulfoxide reductase msrA","E4",0.17,0.01,0.81,0.05,23.5,58.16]
["Solyc03g112230","ZZ type zinc finger domain-containing protein (Fragment)",null,3.3,0.47,4.02,1.13,4.5,7.41]
["Solyc03g115230","ClpB chaperone","ClpB",1.04,0.07,0.4,0.01,113.5,63.34]
["Solyc03g118040","Calcium-binding protein Calnexin","CNX61.0",2.32,0.29,1.85,0.02,36,46.65]
["Solyc03g123540","class II heat shock protein Hsp20","Hsp20",0.54,0.03,0.3,0.04,8.5,62.5]
["Solyc04g014480","class I heat shock protein 3 Hsp20","Hsp20",0.37,0.02,0.1,0.01,12,76.9]
["Solyc04g048900","Calreticulin 2 calcium-binding protein","CALR2",0.59,0.27,0.42,0.2,0.5,6.42]
["Solyc04g081570","Chaperone protein htpG","htpG",1.25,0.01,0.33,0.06,41.5,49.38]
["Solyc05g010670","Chaperone protein htpG","htpG",0.52,0.05,0.39,0.05,58.5,60.93]
["Solyc05g053620","F-box protein PP2-B1","PP2-B1",2.12,0.63,2.88,0.4,3,27.27]
["Solyc05g056230","Calreticulin 2 calcium-binding protein","CALR2",0.18,0.01,0.11,0.01,12.5,37.87]
["Solyc05g056390","Chaperonin Cpn10","Cpn10",2,0.15,0.85,0.11,10.5,76.29]
["Solyc07g043320","Prefoldin","PFDN",0.48,0.03,0.64,0.02,119.5,69.26]
["Solyc09g057670","FK506-binding protein 2 (Peptidyl-prolyl cis-trans isomerase)(PPIase)(Rotamase)","PPI",0.27,0.03,0.09,0.01,7.5,62.76]
["Solyc09g075950","Heat shock protein 1","Hsp70",0.85,0.03,0.32,0,32,46.88]
["Solyc10g081240","GrpE nucleotide exchange factor","GrpE",0.44,0.04,0.5,0.05,19,36.85]
["Solyc11g020040","Chaperone DnaK","DNAK",0.42,0.04,0.32,0,72.5,59.47]
["Solyc11g020330","class IV heat shock protein Hsp20","er-sHsp",0.13,0.01,0.02,0,19,56.31]
["Solyc12g009250","Chaperonin Cpn10","Cpn10",1.1,0.06,0.49,0.02,21,80]
[]
["Proteolysis"]
["Solyc01g111440","Senescence-associated protein 12","SAG12",1.47,0.29,2.16,0.69,11,29.8]
["Solyc02g062970","Xaa-Pro aminopeptidase 2","pepP2",0.5,0.01,0.54,0.05,16.5,33.34]
["Solyc02g068380","N-carbamoyl-L-amino-acid amidohydrolase","amaB",0.4,0.13,0.92,0.01,4.5,11.36]
["Solyc02g086830","Protease Do-like","DEGP",5.52,0.03,1.42,0.1,2.5,12.79]
["Solyc02g088700","Mitochondrial processing peptidase beta subunit","mppB",2.05,0.37,1.45,0,16,37.03]
["Solyc03g025610","Subtilisin-like serine protease","SBT",0.37,0.08,1.11,0.07,8.5,26.68]
["Solyc03g121270","IAA-amino acid hydrolase","ILL",0.35,0.03,0.2,0.01,14.5,37.64]
["Solyc04g077650","Serine carboxypeptidase 1","CPB1",0.49,0,1.2,0.12,8.5,23.03]
["Solyc06g062950","Subtilisin-like protease","S8A",2.38,0.15,1.42,0.04,18,28.42]
["Solyc06g073060","Iaa-amino acid hydrolase 6","ILL6",0.43,0.08,0.35,0.02,12.5,34.42]
["Solyc07g041900","Cathepsin L-like cysteine proteinase","CYP3",0.92,0.04,0.42,0.05,11.5,33.71]
["Solyc08g079870","Subtilisin-like protease","P69B",3.27,0.2,2.47,0.05,23.5,40.87]
["Solyc09g011030","Hsp70 nucleotide exchange factor fes1","FES1",0.38,0.02,0.68,0.03,23.5,53.27]
["Solyc11g022590","Kunitz trypsin inhibitor 4","KTI4",9.16,1.5,2.01,0.16,9.5,48.89]
["Solyc12g088670","Cathepsin B-like cysteine proteinase","CYP1",3.59,1.28,2.33,0.04,12,21.99]
[]
["Response to stimulus"]
["Solyc00g060810","Major latex-like protein","MLP",0.02,0,0.28,0.02,7.5,20.55]
["Solyc01g057000","Universal stress protein family protein","UspA",0.4,0.02,0.47,0.02,4.5,29.65]
["Solyc01g097240","Pathogenesis-related protein 4B (Fragment)","PR-4b",1.27,0.08,2.02,0.23,17.5,62.94]
["Solyc01g100370","Universal stress protein","UspA",0.3,0.03,0.41,0.04,15.5,56.93]
["Solyc01g102960","class IV heat shock protein","Hsp20",0.11,0.02,0.02,0,23,60.84]
["Solyc01g111080","Gibberellin-regulated protein 2 (Snakin-2)","SN2",1.38,0.07,2.04,0.11,2.5,10.58]
["Solyc02g031950","Pathogenesis-related protein-like protein","PR-like",0.92,0.11,3.65,0.12,8.5,32.4]
["Solyc02g077880","Auxin-repressed / Dormancyauxin associated protein",null,1.33,0.21,0.31,0,6.5,55.29]
["Solyc02g084640","Aldehyde dehydrogenase","ALDH",1.92,0.39,5.39,1.41,3,8.38]
["Solyc02g089150","MAP protein kinase-like protein","MAPKL",0.4,0.09,0.54,0.03,1.5,4.54]
["Solyc02g091840","Receptor like kinase","RLK",1.39,0.11,2.27,0.18,5,7.63]
["Solyc02g093600","class I heat shock protein Hsp20-like chaperone","Hsp20",2.99,1.46,0.71,0.02,5.5,35.29]
["Solyc03g007890","Heat shock protein 90 (Fragment)","Hsp90",0.77,0,0.39,0.01,109,62.24]
["Solyc03g025950","Membrane-associated progesterone receptor component 1","PGRMC1",0.45,0.06,0.84,0.08,2,58.59]
["Solyc03g082920","Heat shock protein 70","Hsp70",1.23,0.04,0.49,0.04,41,55.92]
["Solyc03g113930","class IV heat shock protein Hsp20","Hsp20",0.14,0.01,0.03,0,13.5,53.72]
["Solyc03g117630","Heat shock protein 70","Hsp70",0.96,0.01,0.15,0.01,32,69.8]
["Solyc03g119040","Guanine nucleotide-binding protein beta subunit-like protein","GNBL",3.13,2.12,4.12,3.12,3,45.7]
["Solyc04g014600","Universal stress protein family protein","UspA",0.83,0.09,0.49,0.09,20,65.43]
["Solyc04g071620","ABA/WDS induced protein","ASR4",4.98,0.41,3.66,0.07,21.5,73.91]
["Solyc04g074230","14-3-3 protein sigma gamma zeta beta/alpha","TFT7",0.39,0.01,0.82,0.03,18,56.2]
["Solyc05g005700","Aldehyde dehydrogenase 1","ALDH1",2.15,0.34,1.02,0.21,21.5,43.1]
["Solyc05g014280","Heat shock protein Hsp20","Hsp20",0.27,0.01,0.35,0.02,31,56.33]
["Solyc05g051660","Gibberellin receptor GID1L2","GID1L2",1.34,0.29,2.19,0.23,1.5,15.99]
["Solyc06g009050","Universal stress protein","UspA",0.48,0.1,0.89,0.11,11,34.16]
["Solyc06g036290","Heat shock protein 90 (Fragment)","Hsp90",0.82,0.01,0.47,0.08,16,62.02]
["Solyc06g076520","class I heat shock protein Hsp20","Hsp17.7",0.89,0.05,0.32,0,69,77.92]
["Solyc06g076540","class I heat shock protein Hsp20","Hsp20",13.25,5.45,19.16,9.95,27,77.92]
["Solyc06g076560","class I heat shock protein Hsp20","Hsp20",0.06,0,0.04,0.01,9.5,77.92]
["Solyc06g076890","Pleckstrin homology domain-containing protein 1","PLEKH1",0.94,0.15,2.44,0.02,3.5,47.22]
["Solyc07g064160","Thiazole biosynthetic enzyme","THI1",10.09,2.15,1.46,0.23,17.5,47.32]
["Solyc08g029160","Membrane-associated progesterone receptor component 2","PGRMC2",0.41,0.02,0.61,0.01,13.5,62.5]
["Solyc08g062340","Class II small heat shock protein","Hsp17.6",0.34,0.12,0.42,0.01,16,73.23]
["Solyc08g075870","Dehydration-responsive family protein-like",null,2.41,0.78,3.12,0.87,4.5,8.79]
["Solyc08g078700","Heat shock protein 22 Hsp20","MTSHP",1.17,0.01,0.39,0.01,25,64.29]
["Solyc08g080640","Thaumatin, pathogenesis-related",null,0.76,0.07,0.5,0.11,11,26.32]
["Solyc08g080650","Thaumatin, pathogenesis-related",null,0.22,0.03,0.16,0.06,4,26.02]
["Solyc08g081010","Glutamate-cysteine ligase","GSH1",0.38,0.05,0.76,0,21.5,40.25]
["Solyc08g082820","Heat shock protein 70","BiP/grp78",0.68,0.02,0.45,0.05,11,54.5]
["Solyc09g010630","Heat shock protein 70","Hsp70",2.13,0.08,1.37,0.03,27,73.66]
["Solyc09g015000","class I heat shock protein Hsp20","Hsp20",0.95,0.12,0.45,0.04,17.5,72.02]
["Solyc09g015020","class I heat shock protein 3","Hsp20",1.32,0.09,0.15,0,18,64.93]
["Solyc11g068670","Nicalin","NCLN",2.77,1.76,4.78,3.78,5.5,12.15]
["Solyc12g005180","Chloroplast lipocalin","CHL",1.58,0.01,3.47,0.74,4.5,21.47]
["Solyc12g013700","Aluminum-induced protein-like protein",null,0.4,0.03,0.8,0.01,8,39.77]
[]
["Transport"]
["Solyc00g019740","ATPase subunit 8","MT-ATP8",2.13,0.36,0.88,0.04,2,12.82]
["Solyc01g005620","Mitochondrial 2-oxoglutarate/malate carrier protein","OGCP",2.3,0.89,1.68,0.47,16,41.75]
["Solyc01g007320","ATP synthase subunit beta chloroplastic","ATPB",2.24,0.13,0.51,0.08,74.5,67.49]
["Solyc01g060130","ADP-ribosylation factor-like protein 3","ARL3",1.76,0.22,2.81,0.39,10,56.74]
["Solyc03g113240","DUF1118",null,3.71,0.46,2.6,0.29,1,6.32]
["Solyc03g120980","ATP-binding cassette Transporter ","ABC-Transporter",0.63,0.06,2.43,0.68,10,8.83]
["Solyc04g053080","OTU domain-containing protein 6B","OTUD6B",0.73,0.22,2.59,1.54,2,14.89]
["Solyc06g050980","Ferritin",null,2.28,0.28,0.58,0.03,19,53.78]
["Solyc07g005210","Outer membrane lipoprotein blc","Blc",3.45,0.14,0.79,0.01,7,50.27]
["Solyc07g008160","Nuclear pore complex protein Nup155","Nup155",1.43,0.53,5.34,4.3,4,5.03]
["Solyc07g065310","Magnesium and cobalt efflux protein corC","corC",0.41,0.17,0.56,0.06,2,7.25]
["Solyc08g008210","V-type proton ATPase subunit E","VHA-E",2.06,0.21,1.15,0.14,4.5,42.53]
["Solyc08g062660","Ran GTPase binding protein","RAN",2.04,0.17,0.66,0.03,25.5,59.15]
["Solyc09g090570","Proton gradient regulation 5","PGR5",1.56,0.06,2.74,0.57,1,9.24]
["Solyc10g075070","Non-specific lipid-transfer protein","NSL-TP",2.95,0.24,0.75,0.01,20.5,71.06]
["Solyc10g075100","Non-specific lipid-transfer protein","NSL-TP",2.45,0.28,2.47,0.05,4.5,34.65]
["Solyc10g075110","Non-specific lipid-transfer protein","TSW12",1.58,0.36,0.48,0.09,1,32.46]
["Solyc10g075150","Non-specific lipid-transfer protein","NSL-TP",2.79,0.64,1.36,0.02,2.5,26.11]
["Solyc11g006780","Vesicle-associated membrane protein 7B","VAMP7B",2.17,1.08,1.11,0.03,4,21.04]
["Solyc12g010010","Cyclic nucleotide gated channel","CNG",0.3,0.06,1.74,0.35,1,1.88]
["Solyc12g010320","Outer membrane lipoprotein blc","Blc",0.41,0,0.92,0.03,22,56.22]
["Solyc12g055800","V-type ATP synthase alpha chain","VHA-A",2.08,0.05,1.27,0.05,91.5,73.75]
[]
["Unknown"]
["Solyc01g081430","Expressed protein (Fragment)",null,0.5,0.14,0.78,0.07,1.5,1.28]
["Solyc02g086460","Unknown Protein",null,0.29,0.1,0.47,0.03,76,35.6]
["Solyc03g118390","Chromosome 14 contig 1 DNA sequence",null,2.83,1.42,2.03,0.07,2.5,8.64]
["Solyc04g080390","Unknown Protein",null,1.33,0.19,2.37,0.28,1,7.96]
["Solyc04g080540","ST225",null,0.68,0.02,0.17,0.01,12,69.85]
["Solyc05g054090","Unknown Protein",null,0.45,0.04,0.63,0.1,16.5,98.26]
["Solyc06g009630","CP12",null,0.43,0.08,1.14,0.04,9,48.82]
["Solyc07g017410","Unknown Protein",null,0.62,0.27,2.27,1.33,1.5,12.23]
["Solyc07g032630","Unknown Protein",null,1.67,0.27,3.36,1.13,1,10.26]
["Solyc09g015650","Non-green plastid inner envelope membrane protein",null,11.33,7.04,27.34,5.47,1,14.71]
["Solyc11g006510","Genomic DNA chromosome 5 P1 clone MUK11",null,1.2,0.06,2.03,0.96,1.5,9.09]
[]
["aAccession number from the International Tomato Annotation Group release version 2.3.\nbThe average abundance ratio of proteins in SlVPE3 RNAi fruits versus wild-type at 41 days post-anthesis (dpa) from two independent biological replicates. The meaningful cut-off was fixed at 2 fold corresponding to the iTRAQ ratio of >2.0 for up-regulation and <0.5 for down-regulation.\ncThe average abundance ratio of proteins in SlVPE3 RNAi fruit versus wild-type at 44 dpa from two independent biological replicates. The meaningful cut-off was fixed at 2 fold corresponding to the iTRAQ ratio of >2.0 for up-regulation and <0.5 for down-regulation.\ndNumber of unique peptides identified (95% confidence).\neAmino acid sequence coverage for the identified proteins.\n"]

{"sheet":"Sheet2","index":1,"n_rows":0,"n_cols":0,"rows_kept":0,"flags":["formulas_cached_only"]}

{"sheet":"Sheet3","index":2,"n_rows":0,"n_cols":0,"rows_kept":0,"flags":["formulas_cached_only"]}