SNP	PMID	Author	Disease	Category	Survey	Continent	Location	Chromosome	Position	Corrected.OR	Corrected.Risk.Allele	P.VALUE	REF.allele	ALT.x	AFR.Risk.Allele.Freq	AMR.Risk.Allele.Freq	EAS.Risk.Allele.Freq	EUR.Risk.Allele.Freq	SAS.Risk.Allele.Freq	Average.Risk.Allele.Freq	ANC.Allele	ANC_or_DER	Category7	Sample_size
rs1000589	23180869	Wu C	Pancreatic cancer	cancer	642 European ancestry cases	EUR	13q21.31	13	63567780	1.27	T	3.00E-06	G	T	0.4826	0.5086	0.6825	0.4334	0.7311	0.56764	G	DER	cancer	642
rs10009409	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	MIX	4q13.3	4	72989536	1.08	T	2.00E-10	C	T	0.407	0.5519	0.5159	0.327	0.3661	0.43358	C	DER	cancer	87040
rs10052657	25129146	Wu C	Esophageal squamous cell carcinoma	cancer	"5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls"	EAS	5q11.2	5	59111944	1.25	C	1.00E-06	C	A	0.8949	0.8069	0.869	0.825	0.8497	0.8491	A	DER	cancer	11124
rs10052657	21642993	Wu C	Esophageal cancer	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	5q11.2	5	59111944	1.49	C	2.00E-19	C	A	0.8949	0.8069	0.869	0.825	0.8497	0.8491	A	DER	cancer	4075
rs10058728	21642993	Wu C	Esophageal cancer	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	5q32	5	149524529	2.04	T	5.00E-09	A	T	0.8381	0.7075	0.9921	0.5348	0.7239	0.75928	T	ANC	cancer	4075
rs10069690	23535733	Garcia-Closas M	Breast cancer	cancer	"4,193 European ancestry cases, 35,194 European ancestry controls"	EUR	5p15.33	5	1279675	1.15	T	5.00E-12	C	T	0.6619	0.2205	0.1687	0.2763	0.271	0.31968	T	ANC	cancer	39387
rs10088262	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	8q24.13	8	123753462	1.4	A	4.00E-06	A	G	0.8427	0.4323	0.3313	0.3072	0.3466	0.45202	A	ANC	cancer	6200
rs10090154	22923026	Cheng I	Prostate cancer	cancer	"1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls"	MIX	8q24.21	8	127519892	1.68	T	3.00E-06	T	C	0.1906	0.0807	0.1379	0.1014	0.1329	0.1287	T	ANC	cancer	4175
rs10094872	24861552	Rafnar T	Urinary bladder cancer	cancer	"1,670 European ancestry cases, 90,180 European ancestry controls"	EUR	8q24.21	8	127707639	1.26	T	2.00E-07	A	T	0.2746	0.196	0.1786	0.3489	0.3834	0.2763	A	DER	cancer	91850
rs1011970	20453838	Turnbull C	Breast cancer	cancer	"3,659 European ancestry cases, 4,897 European ancestry controls"	EUR	9p21.3	9	22062135	1.09	T	3.00E-08	G	T	0.3442	0.389	0.1052	0.1551	0.2566	0.25002	G	DER	cancer	8556
rs1016343	18264097	Eeles RA	Prostate cancer	cancer	"1,854 European ancestry cases, 1,894 European ancestry controls"	EUR	8q24.21	8	127081052	1.37	T	1.00E-07	C	T	0.2103	0.1225	0.2986	0.2177	0.1524	0.2003	C	DER	cancer	3748
rs10170236	23007406	Yang JJ	Acute lymphoblastic leukemia (childhood)	cancer	"1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases"	MIX	"2q23.2, 2q23.3"	2	149601110	1.45	G	4.00E-06	G	A	0.6604	0.255	0.1359	0.2386	0.2413	0.30624	A	DER	cancer	1268
rs10180663	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	2p23.3	2	25410373	1.64	T	2.00E-06	T	C	0.1573	0.6398	0.4365	0.672	0.6892	0.51896	C	DER	cancer	8966
rs10187424	21743467	Kote-Jarai Z	Prostate cancer	cancer	"6,621 European ancestry cases, 6,939 European ancestry controls"	EUR	2p11.2	2	85567174	1.09	T	3.00E-15	T	C	0.3109	0.6412	0.6141	0.5567	0.6452	0.55362	C	DER	cancer	13560
rs10197940	23143601	Lan Q	Lung cancer	cancer	"5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls"	EAS	2q23.3	2	151397404	1.12	T	5.00E-06	T	C	0.6301	0.5576	0.5139	0.5954	0.5603	0.57146	C	DER	cancer	10054
rs1027643	22544364	Turnbull C	Wilms tumor	cancer	"757 European ancestry cases, 1,879 European ancestry controls"	EUR	5q14.3	5	92558085	1.43	T	5.00E-10	C	T	0.5688	0.0764	0.0933	0.0616	0.1595	0.19192	T	ANC	cancer	2636
rs1035209	24737748	Whiffin N	Colorectal cancer	cancer	"5,626 European ancestry cases, 7,817 European ancestry controls"	EUR	10q24.2	10	99585609	1.12	T	5.00E-11	C	T	0.0673	0.0836	0.1786	0.1948	0.0941	0.12368	C	DER	cancer	13443
rs10411161	21424380	Sehrawat B	Breast cancer	cancer	"302 European ancestry female cases, 321 European ancestry female controls"	EUR	19q13.41	19	51869723	1.42	T	7.00E-06	C	T	0.3427	0.2075	0.2966	0.1332	0.4315	0.2823	C	DER	cancer	623
rs10411210	19011631	Houlston RS	Colorectal cancer	cancer	"1,902 European ancestry cases, 1,929 European ancestry controls"	EUR	19q13.11	19	33041394	1.15	C	5.00E-09	C	T	0.5605	0.853	0.8075	0.9026	0.6472	0.75416	C	ANC	cancer	3831
rs1041449	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	MIX	21q22.3	21	41529494	1.06	G	3.00E-08	A	G	0.388	0.4856	0.1954	0.4135	0.2413	0.34476	A	DER	cancer	87040
rs10419226	24121790	Levine DM	Esophageal adenocarcinoma	cancer	"1,516 European ancestry cases, 3,209 European ancestry controls"	EUR	19p13.11	19	18692362	1.19	T	8.00E-07	T	G	0.0461	0.3718	0.3264	0.4463	0.4172	0.32156	G	DER	cancer	4725
rs1044873	24292274	Speedy HE	Chronic lymphocytic leukemia	cancer	"1,739 European ancestry cases, 5,199 European ancestry controls"	EUR	16q24.1	16	85922065	1.29	C	1.00E-09	C	T	0.5567	0.7176	0.628	0.6014	0.7761	0.65596	T	DER	cancer	6938
rs10472076	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	5q11.2	5	58888234	1.05	C	3.00E-08	T	C	0.2458	0.33	0.2976	0.3648	0.2607	0.29978	T	DER	cancer	22627
rs10474352	25038754	Cai Q	Breast cancer	cancer	"2,867 Chinese ancestry cases, 2,285 Chinese ancestry controls, 2,246 Korean ancestry cases, 2,052 Korean ancestry controls"	EAS	5q14.3	5	91436408	1.09	C	2.00E-09	C	T	0.6082	0.8055	0.5119	0.8588	0.5624	0.66936	C	ANC	cancer	9450
rs10484561	20639881	Conde L	Follicular lymphoma	cancer	"681 European ancestry cases, 750 European ancestry controls"	EUR	6p21.32	6	32697643	1.95	G	1.00E-29	T	G	0.1725	0.1225	0.0575	0.1372	0.0879	0.11552	T	DER	cancer	1431
rs10484761	21642993	Wu C	Esophageal cancer	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	6p21.1	6	40834522	1.33	C	7.00E-12	T	C	0.4826	0.245	0.1339	0.2406	0.1554	0.2515	T	DER	cancer	4075
rs10486567	18264096	Thomas G	Prostate cancer	cancer	"1,172 European ancestry cases, 1,157 European ancestry controls"	EUR	"7p15.1, 7p15.2"	7	27936944	1.12	G	2.00E-06	G	A	0.7216	0.5403	0.126	0.7704	0.6667	0.565	G	ANC	cancer	2329
rs10494112	21623375	Albagha OM	Paget's disease	cancer	"741 European ancestry cases, 2,699 European ancestry controls"	EUR	1p13.3	1	109809855	1.72	G	7.00E-35	A	G	0.1293	0.1037	0.001	0.1899	0.135	0.11178	A	DER	cancer	3440
rs10498635	21623375	Albagha OM	Paget's disease	cancer	"741 European ancestry cases, 2,699 European ancestry controls"	EUR	14q32.12	14	92636964	1.44	C	3.00E-11	C	T	0.9387	0.8862	0.998	0.8191	0.8671	0.90182	C	ANC	cancer	3440
rs10500715	23180869	Wu C	Pancreatic cancer	cancer	642 European ancestry cases	EUR	11p15.4	11	9951515	1.32	T	2.00E-07	T	G	0.7489	0.5821	0.8085	0.5596	0.6483	0.66948	T	ANC	cancer	642
rs10505477	24737748	Whiffin N	Colorectal cancer	cancer	"5,626 European ancestry cases, 7,817 European ancestry controls"	EUR	8q24.21	8	127395198	1.198	A	8.00E-13	A	G	0.8714	0.5317	0.3889	0.4791	0.5051	0.55524	A	ANC	cancer	13443
rs10505477	24740154	Lange EM	Prostate cancer (early onset)	cancer	"931 European ancestry cases, 4,120 European ancestry controls"	EUR	8q24.21	8	127395198	1.39	A	9.00E-09	A	G	0.8714	0.5317	0.3889	0.4791	0.5051	0.55524	A	ANC	cancer	5051
rs1050631	23644492	Wu C	Esophageal squamous cell cancer (length of survival)	cancer	"1,331 Chinese ancestry cases"	EAS	18q12.2	18	36114157	1.3	A	4.00E-08	G	A	0.1725	0.3602	0.1925	0.3658	0.2822	0.27464	G	DER	cancer	1331
rs10509328	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	10q22.1	10	71007652	1.86	C	1.00E-06	T	C	0.1415	0.0504	0.1885	0.0944	0.0491	0.10478	C	ANC	cancer	8966
rs10510102	21263130	Fletcher O	Breast cancer	cancer	"2,839 European ancestry cases, 3,507 European ancestry controls"	EUR	10q26.13	10	121865675	1.12	C	2.00E-06	T	C	0.1641	0.1513	0.1796	0.1779	0.0869	0.15196	T	DER	cancer	6346
rs10510452	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	3p24.3	3	16583541	1.24	A	1.00E-08	A	G	0.9402	0.8055	0.9107	0.7008	0.774	0.82624	A	ANC	cancer	5932
rs1051730	19836008	Landi MT	Lung adenocarcinoma	cancer	"5,739 European ancestry cases, 5,848 European ancestry controls"	EUR	15q25.1	15	78601997	1.31	A	2.00E-51	G	A	0.087	0.2161	0.0268	0.3688	0.183	0.17634	G	DER	cancer	11587
rs1052501	22120009	Broderick P	Multiple myeloma	cancer	"1,675 European ancestry cases, 5,903 European ancestry controls"	EUR	3p22.1	3	41883906	1.32	C	2.00E-08	C	T	0.6959	0.1816	0.1468	0.1899	0.1789	0.27862	T	DER	cancer	7578
rs10752881	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	1q25.3	1	183004356	1.07	A	5.00E-06	A	G	0.6823	0.389	0.372	0.4672	0.4018	0.46246	A	ANC	cancer	8270
rs10759243	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	9q31.2	9	107543834	1.06	A	1.00E-08	C	A	0.674	0.3746	0.4504	0.3082	0.4008	0.4416	A	ANC	cancer	22627
rs10771399	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	12p11.22	12	28002147	1.16	A	8.00E-31	A	G	0.966	0.928	0.8234	0.8936	0.862	0.8946	A	ANC	cancer	22627
rs10771399	23544013	Couch FJ	Breast Cancer in BRCA1 mutation carriers	cancer	"1,426 European ancestry cases, 1,301 European ancestry controls"	EUR	12p11.22	12	28002147	1.18	A	8.00E-06	A	G	0.966	0.928	0.8234	0.8936	0.862	0.8946	A	ANC	cancer	2727
rs10774214	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	12p13.32	12	4259186	1.14	T	1.00E-10	T	C	0.6551	0.464	0.3214	0.3807	0.3487	0.43398	C	DER	cancer	8270
rs10775480	24163127	Figueroa JD	Bladder cancer	cancer	"up to 2,305 European ancestry cases, up to 3,901 European ancestry controls"	EUR	"18q12.3, 18q12.3[rs10775480]; 18q12.3[rs10853535]"	18	45737317	1.13	T	6.00E-08	T	C	0.354	0.255	0.0685	0.4195	0.3241	0.28422	C	DER	cancer	6206
rs1078806	23354978	Rinella ES	Breast cancer	cancer	"477 Ashkenazi Jewish cases, 524 Ashkenazi Jewish controls"	EUR	10q26.13	10	121579461	1.43	G	2.00E-06	A	G	0.1876	0.3746	0.2778	0.4423	0.3231	0.32108	A	DER	cancer	1001
rs10788473	23180869	Wu C	Pancreatic cancer	cancer	642 European ancestry cases	EUR	10q23.1	10	85980996	1.27	T	3.00E-06	C	T	0.1747	0.3026	0.3631	0.3688	0.5092	0.34368	C	DER	cancer	642
rs10795668	18372905	Tomlinson IP	Colorectal cancer	cancer	"922 European ancestry cases, 927 European ancestry controls"	EUR	10p14	10	8659256	1.12	A	3.00E-13	G	A	0.0197	0.3084	0.3681	0.3201	0.2106	0.24538	G	DER	cancer	1849
rs10795668	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	10p14	10	8659256	1.15	G	5.00E-15	G	A	0.9803	0.6916	0.6319	0.6799	0.7894	0.75462	G	ANC	cancer	8270
rs10821936	23512250	Xu H	Acute lymphoblastic leukemia (childhood)	cancer	"972 European ancestry cases, 1,386 European ancestry controls, 89 African American cases, 1,363 African American controls, 305 Hispanic cases, 1,008 Hispanic controls"	MIX	10q21.2	10	61963818	1.86	C	6.00E-46	C	T	0.2005	0.4755	0.3571	0.328	0.5153	0.37528	T	DER	cancer	5123
rs10822013	21908515	Cai Q	Breast cancer	cancer	"2,062 East Asian ancestry cases, 2,066 East Asian ancestry controls"	EAS	10q21.2	10	62492218	1.12	T	6.00E-09	C	T	0.1778	0.5231	0.505	0.504	0.5051	0.443	C	DER	cancer	4128
rs10849033	19684603	Trevino LR	Acute lymphoblastic leukemia (childhood)	cancer	"317 European ancestry cases, 17,958 European ancestry controls"	EUR	12p13.32	12	4315956	2.55	G	9.00E-06	G	A	0.4622	0.2205	0.4802	0.0209	0.1483	0.26642	G	ANC	cancer	18275
rs10849432	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	12p13.31	12	6276561	1.14	T	6.00E-10	C	T	0.7035	0.8012	0.8135	0.9026	0.9611	0.83638	T	ANC	cancer	8270
rs10873876	19684603	Trevino LR	Acute lymphoblastic leukemia (childhood)	cancer	"317 European ancestry cases, 17,958 European ancestry controls"	EUR	1p31.1	1	76306643	1.55	T	4.00E-06	T	C	0.4849	0.2205	0.2887	0.1978	0.1912	0.27662	C	DER	cancer	18275
rs10875943	21743467	Kote-Jarai Z	Prostate cancer	cancer	"6,621 European ancestry cases, 6,939 European ancestry controls"	EUR	12q13.12	12	49282227	1.07	C	7.00E-12	T	C	0.6884	0.3256	0.8323	0.2942	0.6575	0.5596	C	ANC	cancer	13560
rs10896449	18264096	Thomas G	Prostate cancer	cancer	"1,172 European ancestry cases, 1,157 European ancestry controls"	EUR	11q13.3	11	69227200	1.1	G	2.00E-09	A	G	0.7179	0.3458	0.0744	0.5089	0.2924	0.38788	G	ANC	cancer	2329
rs10911251	23266556	Peters U	Colorectal cancer	cancer	"12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls"	EUR	1q25.3	1	183112059	1.09	A	9.00E-08	A	C	0.829	0.6124	0.4812	0.5467	0.5961	0.61308	A	ANC	cancer	27809
rs1092913	21424380	Sehrawat B	Breast cancer	cancer	"302 European ancestry female cases, 321 European ancestry female controls"	EUR	5p15.2	5	10467590	1.45	A	2.00E-06	G	A	0.3222	0.3573	0.6865	0.0974	0.3415	0.36098	G	DER	cancer	623
rs10934853	19767754	Gudmundsson J	Prostate cancer	cancer	"Up to 1,968 European ancestry cases, 35,382 European ancestry controls"	EUR	3q21.3	3	128319530	1.12	A	3.00E-10	C	A	0.7784	0.4524	0.4901	0.2793	0.4703	0.4941	A	ANC	cancer	37350
rs10936599	24163127	Figueroa JD	Bladder cancer	cancer	"6,911 European ancestry cases, 11,818 European ancestry controls"	EUR	3q26.2	3	169774313	1.1765	C	5.00E-09	C	T	0.9629	0.6455	0.4216	0.7575	0.7618	0.70986	C	ANC	cancer	18729
rs10936599	23955597	Chubb D	Multiple myeloma	cancer	"2,335 European ancestry cases, 7,306 European ancestry controls"	EUR	3q26.2	3	169774313	1.256	C	9.00E-14	C	T	0.9629	0.6455	0.4216	0.7575	0.7618	0.70986	C	ANC	cancer	9641
rs10936632	21743467	Kote-Jarai Z	Prostate cancer	cancer	"6,621 European ancestry cases, 6,939 European ancestry controls"	EUR	3q26.2	3	170412314	1.11	A	7.00E-22	C	A	0.174	0.3386	0.2738	0.5179	0.5133	0.36352	C	DER	cancer	13560
rs10937405	22797724	Shiraishi K	Lung adenocarcinoma	cancer	"1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls"	EUR	3q28	3	189665394	1.25	C	7.00E-17	C	T	0.7322	0.7089	0.6895	0.5716	0.681	0.67664	T	DER	cancer	7028
rs10941679	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	5p12	5	44706396	1.13	G	2.00E-37	A	G	0.1823	0.3862	0.4871	0.2326	0.3569	0.32902	A	DER	cancer	22627
rs10993994	18264097	Eeles RA	Prostate cancer	cancer	"1,854 European ancestry cases, 1,894 European ancestry controls"	EUR	"10q11.22, 10q11.23"	10	46046326	1.25	T	9.00E-29	T	C	0.6452	0.3977	0.4653	0.3867	0.6176	0.5025	T	ANC	cancer	3748
rs10993994	24740154	Lange EM	Prostate cancer (early onset)	cancer	"931 European ancestry cases, 4,120 European ancestry controls"	EUR	"10q11.22, 10q11.23"	10	46046326	1.32	T	2.00E-07	T	C	0.6452	0.3977	0.4653	0.3867	0.6176	0.5025	T	ANC	cancer	5051
rs10995190	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	10q21.2	10	62518923	1.16	G	1.00E-36	G	A	0.826	0.889	0.9782	0.8489	0.9223	0.89288	G	ANC	cancer	22627
rs11012732	21804547	Dobbins SE	Meningioma	cancer	"859 European ancestry cases, 704 European ancestry controls"	EUR	10p12.31	10	21541175	1.46	A	2.00E-14	A	G	0.7345	0.7939	0.9841	0.6481	0.7751	0.78714	A	ANC	cancer	1563
rs11022157	24292274	Speedy HE	Chronic lymphocytic leukemia	cancer	"1,739 European ancestry cases, 5,199 European ancestry controls"	EUR	11p15.5	11	2301599	1.22	A	3.00E-06	C	A	0.0817	0.2637	0.1399	0.3588	0.271	0.22302	C	DER	cancer	6938
rs11026318	23502783	Weinhold N	Multiple myeloma (hyperdiploidy)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	"11p14.3, 11p15.1"	11	21875334	2.33	T	9.00E-06	C	T	0.3283	0.2795	0.1885	0.0855	0.1421	0.20478	T	ANC	cancer	8966
rs11037575	22941191	Diskin SJ	Neuroblastoma	cancer	"2,101 European ancestry cases, 4,202 European ancestry controls"	EUR	11p11.2	11	43706780	1.231	C	5.00E-08	T	C	0.1392	0.5605	0.7073	0.3907	0.4192	0.44338	T	DER	cancer	6303
rs110419	21124317	Wang K	Neuroblastoma	cancer	"1,627 European ancestry child cases, 3,254 European ancestry child controls"	EUR	11p15.4	11	8231306	1.34	A	5.00E-16	A	G	0.8525	0.5317	0.5754	0.4771	0.3057	0.54848	A	ANC	cancer	4881
rs11066015	21642993	Wu C	Esophageal cancer	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	12q24.12	12	111730205	1.38	A	7.00E-21	G	A	0	0.0029	0.1756	0	0	0.0357	G	DER	cancer	4075
rs11066280	21642993	Wu C	Esophageal cancer	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	12q24.13	12	112379979	1.3	A	2.00E-15	T	A	8.00E-04	0.0029	0.2163	0	0.0041	0.04482	T	DER	cancer	4075
rs11082321	25038754	Cai Q	Breast cancer	cancer	"2,867 Chinese ancestry cases, 2,285 Chinese ancestry controls, 2,246 Korean ancestry cases, 2,052 Korean ancestry controls"	EAS	18q11.2	18	23196687	1.08	A	7.00E-07	G	A	0.2421	0.304	0.1637	0.0746	0.1074	0.17836	A	ANC	cancer	9450
rs11082438	25279986	Skibola CF	Follicular lymphoma	cancer	"2,728 European ancestry cases, 7,758 European ancestry controls"	EUR	18q12.3	18	45285245	1.33	G	4.00E-07	G	T	0.8283	0.9524	0.9851	0.9543	0.9387	0.93176	G	ANC	cancer	10486
rs11083846	18758461	Di Bernardo MC	Chronic lymphocytic leukemia	cancer	"505 European ancestry cases, 1,438 European ancestry controls"	EUR	19q13.32	19	46704397	1.35	A	4.00E-09	G	A	0.0446	0.1254	0.001	0.1988	0.135	0.10096	G	DER	cancer	1943
rs1110701	25310577	Evans TJ	Acute lymphoblastic leukemia (childhood)	cancer	"358 European ancestry cases, 1,192 European ancestry controls"	EUR	7p12.2	7	50410929	1.69	G	7.00E-09	A	G	0.267	0.2565	0.1101	0.334	0.3027	0.25406	G	ANC	cancer	1550
rs11135910	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	8p21.2	8	26034626	1.11	T	8.00E-11	C	T	0.0862	0.1499	0.0377	0.1332	0.1646	0.11432	C	DER	cancer	22548
rs11155133	19684603	Trevino LR	Acute lymphoblastic leukemia (childhood)	cancer	"317 European ancestry cases, 17,958 European ancestry controls"	EUR	6q24.1	6	140848688	3.62	G	3.00E-07	A	G	0.2731	0.1095	0.1161	0.008	0.0787	0.11708	A	DER	cancer	18275
rs11157317	23502783	Weinhold N	Multiple myeloma (hyperdiploidy)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	14q21.1	14	42934256	1.29	T	9.00E-06	C	T	0.1959	0.3991	0.3403	0.2515	0.2004	0.27744	C	DER	cancer	8966
rs11175194	25134534	Chen K	Epithelial ovarian cancer	cancer	"1,044 Han Chinese ancestry cases, 1,172 Han Chinese ancestry controls"	EAS	12q14.2	12	63871057	1.19	G	1.00E-07	G	A	0.6415	0.8804	0.6071	0.9294	0.7761	0.7669	A	DER	cancer	2216
rs11196172	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	10q25.2	10	112967084	1.14	A	1.00E-12	G	A	0.053	0.1643	0.6468	0.1193	0.3415	0.26498	G	DER	cancer	8270
rs11196174	23544013	Couch FJ	Breast Cancer in BRCA1 mutation carriers	cancer	"1,426 European ancestry cases, 1,301 European ancestry controls"	EUR	10q25.2	10	112974337	1.13	G	8.00E-07	A	G	0.0068	0.196	0.002	0.3072	0.2035	0.1431	A	DER	cancer	2727
rs11199914	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	10q26.12	10	121334387	1.05	C	2.00E-08	C	T	0.4372	0.5865	0.623	0.6759	0.7372	0.61196	T	DER	cancer	22627
rs11214775	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	MIX	11q23.2	11	113936459	1.08	G	3.00E-08	G	A	0.7035	0.8213	0.7579	0.7167	0.7699	0.75386	G	ANC	cancer	87040
rs11228565	19767754	Gudmundsson J	Prostate cancer	cancer	"Up to 1,968 European ancestry cases, 35,382 European ancestry controls"	EUR	11q13.3	11	69211113	1.23	A	7.00E-12	G	A	0.0877	0.1052	0.0466	0.2137	0.1912	0.12888	G	DER	cancer	37350
rs11228583	24740154	Lange EM	Prostate cancer (early onset)	cancer	"931 European ancestry cases, 4,120 European ancestry controls"	EUR	11q13.3	11	69241647	1.33	T	2.00E-07	G	T	0.5991	0.3473	0.0635	0.5089	0.2832	0.3604	G	DER	cancer	5051
rs11242675	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	6p25.3	6	1318643	1.06	T	7.00E-09	C	T	0.475	0.5303	0.4226	0.661	0.592	0.53618	C	DER	cancer	22627
rs11249433	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	1p11.2	1	121538815	1.09	G	2.00E-26	A	G	0.084	0.2493	0.0298	0.4314	0.1534	0.18958	A	DER	cancer	22627
rs11255841	24737748	Whiffin N	Colorectal cancer	cancer	"5,626 European ancestry cases, 7,817 European ancestry controls"	EUR	10p14	10	8697617	1.19	T	7.00E-11	T	A	0.9077	0.7061	0.6379	0.6909	0.7577	0.74006	T	ANC	cancer	13443
rs11543198	25281661	Matsuda K	Bladder cancer	cancer	"531 Japanese ancestry cases, 5,581 Japanese ancestry conrols"	EAS	15q24.1	15	74619987	1.41	G	4.00E-09	G	A	0.9622	0.6398	0.753	0.9652	0.8742	0.83888	G	ANC	cancer	6112
rs11552449	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	1p13.2	1	113905767	1.07	T	2.00E-08	C	T	0.0151	0.3833	0.5873	0.1909	0.1462	0.26456	C	DER	cancer	22627
rs11568818	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	11q22.2	11	102530930	1.1	T	2.00E-11	T	C	0.5484	0.6599	0.9147	0.5606	0.5573	0.64818	T	ANC	cancer	22548
rs11571833	24880342	Wang Y	Lung cancer	cancer	"3,442 European ancestry adenocarcinoma cases, 3,275 European ancestry squamous cell carcinoma cases, 4,631 cases, up to 15,861 controls"	EUR	"13q13.1, 13q13.1[rs11571833]; 13q13.1[rs56084662]"	13	32398489	2.47	T	5.00E-20	A	T	8.00E-04	0.0029	0	0.0109	0.0082	0.00456	A	DER	cancer	27209
rs11571833	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	"13q13.1, 13q13.1[rs11571833]; 13q13.1[rs56084662]"	13	32398489	1.26	T	5.00E-08	A	T	8.00E-04	0.0029	0	0.0109	0.0082	0.00456	A	DER	cancer	22627
rs11636802	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	"15q21.3, 15q21.3[rs11636802]; 15q21.3[rs7169431]"	15	56483399	1.41	G	2.00E-13	A	G	0.0325	0.0576	0.0248	0.1034	0.0532	0.0543	A	DER	cancer	8400
rs11650494	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	17q21.32	17	49267824	1.15	A	2.00E-09	G	A	0.2307	0.0591	0.006	0.0636	0.1094	0.09376	G	DER	cancer	22548
rs116909374	22267200	Gudmundsson J	Thyroid cancer	cancer	"27,758 European ancestry individuals"	EUR	14q13.3	14	36269155	2.09	T	5.00E-11	C	T	0	0.0173	0	0.0417	0.0031	0.01242	C	DER	cancer	27758
rs11780156	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	8q24.21	8	128182395	1.07	T	3.00E-11	C	T	0.0068	0.1643	0.1915	0.1879	0.2198	0.15406	C	DER	cancer	22627
rs11782652	23535730	Pharoah PD	Ovarian cancer	cancer	"3,769 European ancestry cases, 4,396 European ancestry controls"	EUR	8q21.13	8	81741409	1.24	A	7.00E-10	A	G	0.9304	0.9539	1	0.9225	0.9274	0.94684	A	ANC	cancer	8165
rs11789015	24121790	Levine DM	Esophageal adenocarcinoma	cancer	"1,516 European ancestry cases, 3,209 European ancestry controls"	EUR	9q22.32	9	93953746	1.2346	A	2.00E-07	A	G	0.646	0.6628	0.9067	0.7137	0.8129	0.74842	A	ANC	cancer	4725
rs11820646	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	11q24.3	11	129591276	1.05	C	1.00E-09	T	C	0.7723	0.5375	0.5218	0.5596	0.7249	0.62322	T	DER	cancer	22627
rs11892031	24163127	Figueroa JD	Bladder cancer	cancer	"up to 2,305 European ancestry cases, up to 3,901 European ancestry controls"	EUR	2q37.1	2	233656637	1.17	A	1.00E-07	A	C	0.8139	0.8703	0.9732	0.9264	0.9489	0.90654	A	ANC	cancer	6206
rs11902236	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	2p25.1	2	9977740	1.07	T	3.00E-08	C	T	0.646	0.2305	0.1528	0.2853	0.2178	0.30648	T	ANC	cancer	22548
rs11903757	23266556	Peters U	Colorectal cancer	cancer	"12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls"	EUR	2q32.3	2	191722478	1.16	C	4.00E-08	T	C	0.1399	0.1801	0.0675	0.17	0.0767	0.12684	T	DER	cancer	27809
rs1192691	25134534	Chen K	Epithelial ovarian cancer	cancer	"1,044 Han Chinese ancestry cases, 1,172 Han Chinese ancestry controls"	EAS	10p11.21	10	36880367	1.23	G	3.00E-08	G	T	0.1377	0.1095	0.6091	0.0765	0.2669	0.23994	T	DER	cancer	2216
rs11978267	19684603	Trevino LR	Acute lymphoblastic leukemia (childhood)	cancer	"317 European ancestry cases, 17,958 European ancestry controls"	EUR	7p12.2	7	50398606	1.69	G	8.00E-11	A	G	0.1672	0.2334	0.119	0.3211	0.316	0.23134	A	DER	cancer	18275
rs11979158	21531791	Sanson M	Glioma	cancer	"4,147 European ancestry cases, 7,435 European ancestry controls"	EUR	7p11.2	7	55091656	1.23	A	7.00E-08	A	G	0.6755	0.8415	0.998	0.831	0.9509	0.85938	G	DER	cancer	11582
rs11985951	24700089	Miura K	Cervical cancer	cancer	"226 Japanese ancestry cases, 186 Japanese ancestry controls"	EAS	8p21.3	8	20734998	3.36	T	6.00E-06	T	C	0.7935	0.8746	0.9544	0.8151	0.7648	0.84048	T	ANC	cancer	412
rs12051443	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	MIX	16q22.2	16	71657426	1.06	A	3.00E-08	G	A	0.2481	0.5231	0.7341	0.325	0.3108	0.42822	G	DER	cancer	87040
rs12155172	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	7p15.3	7	20954872	1.11	A	5.00E-13	A	G	0.0938	0.1297	0.2778	0.2028	0.2045	0.18172	G	DER	cancer	22548
rs1218582	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	1q21.3	1	154861707	1.06	G	2.00E-08	G	A	0.6626	0.6844	0.9127	0.4592	0.6769	0.67916	G	ANC	cancer	22548
rs12195582	25279986	Skibola CF	Follicular lymphoma	cancer	"2,728 European ancestry cases, 7,758 European ancestry controls"	EUR	6p21.32	6	32476767	1.78	T	5.00E-100	C	T	0.3139	0.5231	0.4206	0.498	0.4325	0.43762	C	DER	cancer	10486
rs1219648	20872241	Li J	Breast cancer	cancer	"2,702 European ancestry female cases, 5,726 European ancestry controls"	EUR	10q26.13	10	121586676	1.32	G	2.00E-13	A	G	0.438	0.4063	0.3819	0.4314	0.3763	0.40678	A	DER	cancer	8428
rs12210050	21700618	Nan H	Basal cell carcinoma	cancer	"2,045 European ancestry cases, 6,013 European ancestry controls"	EUR	6p25.3	6	475489	1.24	T	1.00E-09	C	T	0.0091	0.0562	0	0.1233	0.0133	0.04038	C	DER	cancer	8058
rs12241008	25105248	Wang H	Colorectal cancer	cancer	"2,627 Japanese ancestry cases, 3,797 Japanese ancestry controls, 1,893 African American cases, 4,703 African American controls"	EAS	10q25.2	10	112520943	1.13	C	1.00E-09	T	C	0.2065	0.0677	0.2996	0.1004	0.2178	0.1784	T	DER	cancer	13020
rs12296850	23341777	Dong J	Squamous cell carcinoma	cancer	"833 Han Chinese ancestry cases, 3,094 Han Chinese ancestry controls"	EAS	12q23.1	12	100426307	1.28	A	1.00E-10	A	G	0.885	0.9308	0.7431	0.9404	0.8057	0.861	A	ANC	cancer	3927
rs12309274	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	12p13.33	12	866782	1.11	T	3.00E-06	T	G	0.8661	0.7709	0.876	0.8579	0.8098	0.83614	T	ANC	cancer	8270
rs12355688	23468962	Song C	Breast cancer	cancer	"3,016 African American cases, 2,745 African American controls"	AFR	10q22.3	10	79295869	1.24	T	6.00E-06	C	T	0.2421	0.0749	0.253	0.0567	0.1391	0.15316	C	DER	cancer	5761
rs12412391	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	10q24.2	10	99529178	1.08	G	7.00E-07	A	G	0.1082	0.3271	0.4395	0.2853	0.1984	0.2717	A	DER	cancer	8270
rs12413624	22158540	Wu C	Pancreatic cancer	cancer	"981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls"	EAS	10q26.11	10	118519432	1.23	T	5.00E-11	T	A	0.9017	0.5879	0.6349	0.5726	0.683	0.67602	T	ANC	cancer	2972
rs12422552	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	12p13.1	12	14260997	1.05	C	4.00E-08	G	C	0.4418	0.1988	0.2698	0.2903	0.4018	0.3205	C	ANC	cancer	22627
rs1243180	23535730	Pharoah PD	Ovarian cancer	cancer	"3,769 European ancestry cases, 4,396 European ancestry controls"	EUR	10p12.31	10	21626690	1.1	T	2.00E-08	T	A	0.9766	0.6945	0.9742	0.6759	0.7914	0.82252	T	ANC	cancer	8165
rs12456874	23180869	Wu C	Pancreatic cancer	cancer	642 European ancestry cases	EUR	18p11.21	18	13366863	1.38	G	6.00E-07	A	G	0.0431	0.2262	0.0387	0.2565	0.2618	0.16526	A	DER	cancer	642
rs12480328	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	EUR	20q13.13	20	50911385	1.13	T	5.00E-11	T	C	0.8396	0.9352	0.9117	0.9344	0.9151	0.9072	T	ANC	cancer	87040
rs12493607	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	3p24.1	3	30641447	1.06	C	2.00E-08	G	C	0.1044	0.2752	0.7063	0.337	0.3773	0.36004	C	ANC	cancer	22627
rs12545912	23502783	Weinhold N	Multiple myeloma (hyperdiploidy)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	8p23.1	8	9744189	1.3	G	7.00E-06	G	T	0.3502	0.1614	0.2778	0.2336	0.3057	0.26574	G	ANC	cancer	8966
rs12603526	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	17p13.3	17	897353	1.1	C	3.00E-08	T	C	0.0023	0.0202	0.1994	0.0109	0.0143	0.04942	T	DER	cancer	8270
rs12615966	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	2q12.1	2	104762499	3.15	T	7.00E-06	C	T	0.1301	0.1931	0.0873	0.1372	0.0736	0.12426	C	DER	cancer	6200
rs12621643	19684603	Trevino LR	Acute lymphoblastic leukemia (childhood)	cancer	"317 European ancestry cases, 17,958 European ancestry controls"	EUR	2q36.1	2	223053265	1.48	T	3.00E-06	T	G	0.5159	0.2522	0.3115	0.2932	0.1861	0.31178	T	ANC	cancer	18275
rs12638862	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	3q26.2	3	169759718	1.37	A	2.00E-06	A	G	0.8661	0.6297	0.4097	0.7455	0.7444	0.67908	A	ANC	cancer	8966
rs12653946	20676098	Takata R	Prostate cancer	cancer	"1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls"	EAS	5p15.33	5	1895715	1.26	T	4.00E-18	C	T	0.3964	0.4986	0.3472	0.4513	0.5266	0.44402	T	ANC	cancer	4969
rs12659144	23502783	Weinhold N	Multiple myeloma (hyperdiploidy)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	5q35.2	5	174350517	1.67	C	3.00E-06	T	C	0.2905	0.1095	0.3393	0.159	0.1554	0.21074	T	DER	cancer	8966
rs12699477	23666239	Chung CC	Testicular germ cell tumor	cancer	"582 European ancestry male cases, 1,056 European ancestry male controls"	EUR	7p22.3	7	1929317	1.21	C	6.00E-09	T	C	0.0295	0.4236	0.4454	0.3698	0.3609	0.32584	T	DER	cancer	1638
rs1270884	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	12q24.21	12	114247766	1.07	A	7.00E-11	A	G	0.171	0.3141	0.2431	0.4771	0.3558	0.31222	A	ANC	cancer	22548
rs1292011	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	12q24.21	12	115398717	1.09	A	9.00E-22	A	G	0.5537	0.6254	0.7659	0.5865	0.3793	0.58216	G	DER	cancer	22627
rs12922061	24143190	Low SK	Breast cancer	cancer	"2,642 Japanese ancestry cases, 2,099 Japanese ancestry controls"	EAS	16q12.2	16	52601088	1.231	T	4.00E-10	C	T	0.0454	0.3141	0.2688	0.2316	0.2219	0.21636	C	DER	cancer	4741
rs130067	21743467	Kote-Jarai Z	Prostate cancer	cancer	"6,621 European ancestry cases, 6,939 European ancestry controls"	EUR	6p21.33	6	31150734	1.05	G	3.00E-08	T	G	0.1899	0.3329	0.3462	0.2087	0.2413	0.2638	T	DER	cancer	13560
rs13016963	21983787	Barrett JH	Melanoma	cancer	"2,804 European ancestry cases, 7,618 European ancestry controls"	EUR	2q33.1	2	201298088	1.14	A	9.00E-10	A	G	0.4228	0.5086	0.3115	0.3837	0.2045	0.36622	G	DER	cancer	10422
rs13016963	25129146	Wu C	Esophageal squamous cell carcinoma	cancer	"5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls"	EAS	2q33.1	2	201298088	1.27	A	4.00E-13	A	G	0.4228	0.5086	0.3115	0.3837	0.2045	0.36622	G	DER	cancer	11124
rs13028485	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	2q31.1	2	173640196	2.17	A	2.00E-06	G	A	0.1051	0.0605	0.1964	0.0676	0.1115	0.10822	G	DER	cancer	8966
rs13034020	24920014	Cozen W	Hodgkin's lymphoma	cancer	"1,816 European ancestry cases, 7,877 European ancestry controls"	EUR	2p16.1	2	60816699	1.28	G	3.00E-06	A	G	0.0915	0.1138	0	0.1799	0.0409	0.08522	A	DER	cancer	9693
rs13117307	23817570	Shi Y	Cervical cancer	cancer	"Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls"	EAS	4q12	4	55885574	1.28	T	3.00E-10	C	T	0.121	0.1239	0.1042	0.2604	0.1503	0.15196	C	DER	cancer	4392
rs13254738	22923026	Cheng I	Prostate cancer	cancer	"1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls"	EAS	8q24.21	8	127092098	1.59	C	4.00E-10	C	A	0.6884	0.5303	0.6845	0.335	0.3701	0.52166	C	ANC	cancer	4175
rs13254990	25279986	Skibola CF	Follicular lymphoma	cancer	"2,728 European ancestry cases, 7,758 European ancestry controls"	EUR	8q24.21	8	128064205	1.18	T	1.00E-08	C	T	0.0514	0.2421	0.1994	0.3598	0.2515	0.22084	C	DER	cancer	10486
rs13281615	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	8q24.21	8	127343372	1.09	G	1.00E-27	A	G	0.4592	0.5663	0.5139	0.4433	0.5072	0.49798	A	DER	cancer	22627
rs13314271	24880342	Wang Y	Lung cancer	cancer	"3,442 European ancestry adenocarcinoma cases, 3,275 European ancestry squamous cell carcinoma cases, 4,631 cases, up to 15,861 controls"	EUR	3q28	3	189639813	1.13	T	7.00E-10	T	C	0.7171	0.6441	0.4802	0.506	0.5317	0.57582	T	ANC	cancer	27209
rs13329835	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	16q23.2	16	80616908	1.08	G	2.00E-16	A	G	0.7549	0.1945	0.0387	0.2416	0.0675	0.25944	G	ANC	cancer	22627
rs13343954	24737748	Whiffin N	Colorectal cancer	cancer	"5,626 European ancestry cases, 7,817 European ancestry controls"	EUR	19q13.11	19	33036982	1.183	T	7.00E-08	T	C	0.8026	0.8055	0.7331	0.8509	0.5961	0.75764	T	ANC	cancer	13443
rs13385191	20676098	Takata R	Prostate cancer	cancer	"1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls"	EAS	2p24.1	2	20688505	1.15	G	8.00E-08	A	G	0.0219	0.2695	0.4544	0.2505	0.3528	0.26982	A	DER	cancer	4969
rs13387042	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	2q35	2	217041109	1.14	A	2.00E-57	A	G	0.7784	0.3631	0.0972	0.5199	0.4836	0.44844	G	DER	cancer	22627
rs13393577	22452962	Kim HC	Breast cancer	cancer	"2,273 Korean ancestry cases, 2,052 Korean ancestry controls"	EAS	2q34	2	212432139	1.53	T	9.00E-14	T	C	0.8533	0.9063	0.9563	0.8966	0.8395	0.8904	T	ANC	cancer	4325
rs13397985	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	2q37.1	2	230226508	1.45	G	1.00E-22	T	G	0.1036	0.1138	0.001	0.169	0.1493	0.10734	T	DER	cancer	8400
rs13401811	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	2q13	2	110858527	1.41	G	2.00E-18	G	A	0.8548	0.7651	0.8343	0.8191	0.7751	0.80968	G	ANC	cancer	8400
rs1341239	21623375	Albagha OM	Paget's disease	cancer	"741 European ancestry cases, 2,699 European ancestry controls"	EUR	6p22.3	6	22303975	1.2	A	4.00E-06	A	C	0.3555	0.2478	0.0268	0.3459	0.3323	0.26166	C	DER	cancer	3440
rs1352075	23502783	Weinhold N	Multiple myeloma (hyperdiploidy)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	11q13.3	11	69642525	1.42	T	2.00E-06	C	T	0.2073	0.379	0.8165	0.5129	0.6022	0.50358	C	DER	cancer	8966
rs1353747	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	5q11.2	5	59041654	1.09	T	3.00E-08	T	G	0.9909	0.9107	1	0.9165	0.909	0.94542	T	ANC	cancer	22627
rs1393350	19578364	Bishop DT	Melanoma	cancer	"1,539 European ancestry cases, 3,917 European ancestry controls"	EUR	11q14.3	11	89277878	1.29	A	2.00E-14	G	A	0.0083	0.1225	0.003	0.2435	0.0542	0.0863	G	DER	cancer	5456
rs140068132	25327703	Fejerman L	Breast cancer	cancer	"1,497 Latino cases, 3,213 Latino controls"	AMR	6q25.1	6	151633699	1.67	A	9.00E-18	A	G	0.9992	0.8775	0.997	1	1	0.97474	A	ANC	cancer	4710
rs140355816	24737748	Whiffin N	Colorectal cancer	cancer	"5,626 European ancestry cases, 7,817 European ancestry controls"	EUR	8q23.3	8	116562277	1.591	G	2.00E-08	C	G	0	0.0058	0.001	0.0119	0.0082	0.00538	C	DER	cancer	13443
rs1412829	19578366	Wrensch M	Glioma (high-grade)	cancer	"692 European ancestry cases, 3,992 European ancestry controls"	EUR	9p21.3	9	22043927	1.42	G	2.00E-10	A	G	0.0136	0.1888	0.0933	0.4125	0.271	0.19584	A	DER	cancer	4684
rs1413299	25134534	Chen K	Epithelial ovarian cancer	cancer	"1,044 Han Chinese ancestry cases, 1,172 Han Chinese ancestry controls"	EAS	9q22.33	9	98998959	1.2	G	2.00E-08	G	T	0.2678	0.4712	0.4077	0.5974	0.4192	0.43266	T	DER	cancer	2216
rs1427593	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	2q22.1	2	136797654	1.49	T	7.00E-06	T	C	0.2126	0.3458	0.0288	0.33	0.1616	0.21576	C	DER	cancer	6200
rs1432295	21037568	Enciso-Mora V	Hodgkin's lymphoma	cancer	"589 European ancestry cases, 5,199 European ancestry controls"	EUR	2p16.1	2	60839531	1.22	G	2.00E-08	G	A	0.1301	0.2594	0.0149	0.4324	0.0951	0.18638	A	DER	cancer	5788
rs1432679	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	5q33.3	5	158817075	1.07	C	2.00E-14	C	T	0.8533	0.611	0.6111	0.4473	0.3364	0.57182	C	ANC	cancer	22627
rs1436904	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	18q11.2	18	26990703	1.04	T	3.00E-08	T	G	0.7466	0.549	0.5109	0.5885	0.7628	0.63156	T	ANC	cancer	22627
rs1439287	24292274	Speedy HE	Chronic lymphocytic leukemia	cancer	"1,739 European ancestry cases, 5,199 European ancestry controls"	EUR	2q13	2	111114320	1.37	A	5.00E-15	G	A	0.3752	0.2421	0.4623	0.4672	0.1943	0.34822	G	DER	cancer	6938
rs1447295	19767754	Gudmundsson J	Prostate cancer	cancer	"Up to 1,968 European ancestry cases, 35,382 European ancestry controls"	EUR	8q24.21	8	127472793	1.58	A	2.00E-19	A	C	0.3502	0.1066	0.1419	0.1024	0.1268	0.16558	C	DER	cancer	37350
rs1449572	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	13q14.2	13	48892795	1.73	T	8.00E-06	G	T	0.1407	0.3127	0.1806	0.175	0.1442	0.19064	G	DER	cancer	8966
rs1454694	24737549	Yoon KA	Non-small cell lung cancer (recurrence rate)	cancer	250 Korean ancestry cases	EAS	"4q34.3, 4q34.3[rs1454694]; 4q34.3[rs10019279]"	4	181276794	2.12	C	9.00E-08	T	C	0.1021	0.1311	0.2202	0.2465	0.1534	0.17066	T	DER	cancer	250
rs1494961	21437268	McKay JD	Upper aerodigestive tract cancers	cancer	"2,091 European ancestry cases, 8,334 European ancestry controls"	EUR	4q21.23	4	83453327	1.12	C	1.00E-08	C	T	0.174	0.3559	0.3224	0.5099	0.3732	0.34708	T	DER	cancer	10425
rs1495741	24163127	Figueroa JD	Bladder cancer	cancer	"up to 2,305 European ancestry cases, up to 3,901 European ancestry controls"	EUR	8p22	8	18415371	1.14	A	2.00E-10	G	A	0.5809	0.6499	0.4841	0.7565	0.7791	0.6501	G	DER	cancer	6206
rs1496766	23007406	Yang JJ	Acute lymphoblastic leukemia (childhood)	cancer	"1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases"	MIX	7q21.11	7	78702149	2.84	C	5.00E-06	T	C	0.1362	0.0043	0.0397	0.002	0.0389	0.04422	C	ANC	cancer	1268
rs1512268	22923026	Cheng I	Prostate cancer	cancer	"1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls"	MIX	8p21.2	8	23668950	1.35	T	5.00E-06	T	C	0.6853	0.4539	0.2956	0.4732	0.453	0.4722	T	ANC	cancer	4175
rs1550623	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	2q31.1	2	173348166	1.06	A	3.00E-08	G	A	0.68	0.7882	0.995	0.8469	0.8691	0.83584	A	ANC	cancer	22627
rs1561570	21623375	Albagha OM	Paget's disease	cancer	"741 European ancestry cases, 2,699 European ancestry controls"	EUR	10p13	10	13113726	1.67	T	4.00E-38	T	C	0.7481	0.4597	0.4692	0.501	0.5675	0.5491	T	ANC	cancer	3440
rs1561927	25086665	Wolpin BM	Pancreatic cancer	cancer	"1,582 European ancestry cases, 5,203 European ancestry controls"	EUR	8q24.21	8	128555832	1.15	T	1.00E-07	C	T	0.3926	0.7723	0.9772	0.7525	0.7178	0.72248	C	DER	cancer	6785
rs1562430	21263130	Fletcher O	Breast cancer	cancer	"2,839 European ancestry cases, 3,507 European ancestry controls"	EUR	8q24.21	8	127375606	1.16	T	3.00E-11	T	C	0.5393	0.7334	0.8234	0.5934	0.771	0.6921	T	ANC	cancer	6346
rs1585440	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	13q21.32	13	65907683	1.3	G	9.00E-06	G	T	0.8775	0.7003	0.7272	0.675	0.5941	0.71482	G	ANC	cancer	6200
rs1642764	25129146	Wu C	Esophageal squamous cell carcinoma	cancer	"5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls"	EAS	17p13.1	17	7654516	1.14	C	3.00E-13	C	T	0.7648	0.5331	0.4147	0.4771	0.6442	0.56678	C	ANC	cancer	11124
rs1665650	23263487	Jia WH	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls"	EAS	10q25.3	10	116727589	1.13	T	9.00E-07	T	C	0.4349	0.2435	0.3294	0.2594	0.2239	0.29822	T	ANC	cancer	7847
rs1679013	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	9p21.3	9	22206988	1.19	C	1.00E-08	C	T	0.6997	0.6311	0.2083	0.5249	0.3609	0.48498	C	ANC	cancer	8400
rs16857609	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	2q35	2	217431785	1.08	T	1.00E-15	C	T	0.2322	0.3401	0.5823	0.2744	0.5726	0.40032	C	DER	cancer	22627
rs16886165	19330030	Thomas G	Breast cancer	cancer	"1,145 European ancestry cases, 1,142 European ancestry controls"	EUR	5q11.2	5	56727256	1.23	G	5.00E-07	T	G	0.3616	0.147	0.3403	0.1501	0.3466	0.26912	G	ANC	cancer	2287
rs16892766	18372905	Tomlinson IP	Colorectal cancer	cancer	"922 European ancestry cases, 927 European ancestry controls"	EUR	8q23.3	8	116618444	1.27	A	3.00E-18	A	C	0.8533	0.9366	0.999	0.9095	0.9151	0.9227	A	ANC	cancer	1849
rs16901979	19767754	Gudmundsson J	Prostate cancer	cancer	"Up to 1,968 European ancestry cases, 35,382 European ancestry controls"	EUR	8q24.21	8	127112671	1.8	A	3.00E-14	C	A	0.5106	0.0533	0.2133	0.0358	0.1002	0.18264	A	ANC	cancer	37350
rs16902094	19767754	Gudmundsson J	Prostate cancer	cancer	"Up to 1,968 European ancestry cases, 35,382 European ancestry controls"	EUR	8q24.21	8	127308101	1.21	G	6.00E-15	A	G	0.1142	0.1643	0.25	0.1571	0.1708	0.17128	G	ANC	cancer	37350
rs16951095	20876614	Yoon KA	Non-small cell lung cancer	cancer	"621 Korean ancestry cases, 1,541 Korean ancestry controls"	EAS	18p11.31	18	7042912	1.3	C	7.00E-06	C	T	0.9977	0.9294	0.8135	0.9423	0.9611	0.9288	C	ANC	cancer	2162
rs16953002	23455637	Iles MM	Melanoma	cancer	"1,353 European ancestry cases, 3,566 European ancestry controls"	EUR	16q12.2	16	54080912	1.16	A	4.00E-12	G	A	0.1853	0.1153	0.3085	0.1829	0.1963	0.19766	G	DER	cancer	4919
rs16976734	24292274	Speedy HE	Chronic lymphocytic leukemia	cancer	"1,739 European ancestry cases, 5,199 European ancestry controls"	EUR	15q21.3	15	56090097	1.36	G	4.00E-07	A	G	0.062	0.1484	0.5377	0.1004	0.3456	0.23882	A	DER	cancer	6938
rs17021463	23666239	Chung CC	Testicular germ cell tumor	cancer	"582 European ancestry male cases, 1,056 European ancestry male controls"	EUR	4q22.3	4	94303661	1.19	T	1.00E-08	T	G	0.5045	0.3213	0.2937	0.4384	0.3691	0.3854	G	DER	cancer	1638
rs17065417	22941191	Diskin SJ	Neuroblastoma	cancer	"2,101 European ancestry cases, 4,202 European ancestry controls"	EUR	6q16.3	6	104958399	1.38	A	1.00E-08	A	C	0.8714	0.9553	1	0.9026	0.9172	0.9293	A	ANC	cancer	6303
rs17079534	23007406	Yang JJ	Acute lymphoblastic leukemia (childhood)	cancer	"1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases"	MIX	3p22.1	3	39805581	4.07	A	2.00E-07	G	A	0.0545	0.0072	0	0.001	0.001	0.01274	G	DER	cancer	1268
rs17112190	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	10q24.1	10	96880089	1.8	A	9.00E-07	G	A	0.3094	0.0706	0.0099	0.0845	0.0245	0.09978	A	ANC	cancer	8966
rs17172185	24121790	Levine DM	Esophageal adenocarcinoma	cancer	"1,516 European ancestry cases, 3,209 European ancestry controls"	EUR	7p14.1	7	43247240	1.4706	T	5.00E-06	T	C	0.6384	0.9366	0.75	0.9254	0.9479	0.83966	C	DER	cancer	4725
rs17221259	24143190	Low SK	Breast cancer	cancer	"2,642 Japanese ancestry cases, 2,099 Japanese ancestry controls"	EAS	12p13.1	12	14257551	1.252	C	7.00E-06	T	C	0.0106	0.1182	0.2054	0.2137	0.1984	0.14926	T	DER	cancer	4741
rs17356907	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	12q22	12	95633983	1.1	A	2.00E-22	A	G	0.8245	0.6542	0.7361	0.7068	0.7025	0.72482	A	ANC	cancer	22627
rs17401966	20676096	Zhang H	Hepatocellular carcinoma	cancer	"348 Chinese ancestry cases, 359 Chinese ancestry controls"	EAS	1p36.22	1	10325413	1.64	A	2.00E-18	A	G	0.9425	0.6801	0.7123	0.6909	0.728	0.75076	A	ANC	cancer	707
rs174537	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	"11q12.2, 11q12.2[rs174537]; 11q12.2[rs4246215]"	11	61785208	1.16	G	9.00E-21	G	T	0.975	0.4121	0.4325	0.6511	0.8436	0.66286	T	DER	cancer	8270
rs17483466	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	2q13	2	111039881	1.37	G	4.00E-17	A	G	0.0446	0.196	0.0079	0.2107	0.137	0.11924	A	DER	cancer	8400
rs17505102	22076464	Ellinghaus E	Acute lymphoblastic leukemia (childhood)	cancer	"419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls"	EUR	3q28	3	189683987	1.5873016	G	9.00E-09	G	C	0.975	0.9568	0.9226	0.9046	0.8241	0.91662	G	ANC	cancer	900
rs17530068	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	6q14.1	6	81483392	1.05	C	8.00E-09	T	C	0.0363	0.2392	0.247	0.2346	0.184	0.18822	T	DER	cancer	22627
rs17599629	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	MIX	1q21.3	1	150685811	1.1	G	6.00E-11	A	G	0.0424	0.1844	0.0883	0.1978	0.092	0.12098	A	DER	cancer	87040
rs17631303	23544013	Couch FJ	Ovarian cancer in BRCA1 mutation carriers	cancer	"683 European ancestry cases, 2,044 European ancestry controls"	EUR	17q21.31	17	45439036	1.27	G	1.00E-08	A	G	0.0098	0.1527	0.001	0.1938	0.0491	0.08128	A	DER	cancer	2727
rs17632542	24740154	Lange EM	Prostate cancer (early onset)	cancer	"931 European ancestry cases, 4,120 European ancestry controls"	EUR	19q13.33	19	50858501	1.85	T	1.00E-07	T	C	0.9992	0.9726	0.999	0.9294	0.9499	0.97002	T	ANC	cancer	5051
rs17674580	21750109	Rafnar T	Bladder cancer	cancer	"2,234 European ancestry cases, 41,603 European ancestry controls"	EUR	18q12.3	18	45729946	1.17	T	8.00E-11	C	T	0.0325	0.2003	0.0764	0.332	0.2945	0.18714	C	DER	cancer	43837
rs17749561	25279986	Skibola CF	Follicular lymphoma	cancer	"2,728 European ancestry cases, 7,758 European ancestry controls"	EUR	18q21.33	18	63115978	1.34	G	8.00E-10	G	A	0.997	0.951	0.999	0.8867	0.9755	0.96184	G	ANC	cancer	10486
rs1775148	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	MIX	1q32.1	1	205788696	1.06	C	4.00E-08	C	T	0.7005	0.5749	0.4911	0.3628	0.3875	0.50336	C	ANC	cancer	87040
rs17761864	22960999	Wu C	Esophageal cancer (squamous cell)	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	17p13.3	17	2268343	1.21	A	2.00E-11	C	A	0.0968	0.4265	0.0903	0.3569	0.1421	0.22252	C	DER	cancer	4075
rs17817449	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	16q12.2	16	53779455	1.08	T	6.00E-14	T	G	0.6241	0.7507	0.8304	0.5855	0.7106	0.70026	G	DER	cancer	22627
rs17837497	23007406	Yang JJ	Acute lymphoblastic leukemia (childhood)	cancer	"1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases"	MIX	7q34	7	140002794	2.34	A	2.00E-06	G	A	0.0938	0.0245	0	0	0	0.02366	G	DER	cancer	1268
rs1800682	24292274	Speedy HE	Chronic lymphocytic leukemia	cancer	"1,739 European ancestry cases, 5,199 European ancestry controls"	EUR	10q23.31	10	88990206	1.25	A	2.00E-08	A	G	0.2466	0.4611	0.5139	0.5686	0.5511	0.46826	G	DER	cancer	6938
rs1805007	21700618	Nan H	Basal cell carcinoma	cancer	"2,045 European ancestry cases, 6,013 European ancestry controls"	EUR	16q24.3	16	89919709	1.55	T	4.00E-17	C	T	0.003	0.0159	0.001	0.0716	0.0051	0.01932	C	DER	cancer	8058
rs183211	23544013	Couch FJ	Ovarian cancer in BRCA1 mutation carriers	cancer	"683 European ancestry cases, 2,044 European ancestry controls"	EUR	17q21.31	17	46710944	1.25	A	3.00E-08	G	A	0.3979	0.4323	0.5873	0.2584	0.1391	0.363	A	ANC	cancer	2727
rs1859962	17603485	Gudmundsson J	Prostate cancer	cancer	"1,501 European ancestry cases, 11,290 European ancestry controls"	EUR	17q24.3	17	71112612	1.2	G	3.00E-10	G	T	0.2753	0.5591	0.371	0.4831	0.5276	0.44322	T	DER	cancer	12791
rs1879352	19684603	Trevino LR	Acute lymphoblastic leukemia (childhood)	cancer	"317 European ancestry cases, 17,958 European ancestry controls"	EUR	18p11.32	18	2498055	1.53	C	9.00E-06	T	C	0.0159	0.1138	0.0377	0.16	0.1166	0.0888	T	DER	cancer	18275
rs188140481	23104005	Gudmundsson J	Prostate cancer	cancer	"5,141 European ancestry cases, 54,444 European ancestry controls"	EUR	8q24.21	8	127179427	2.9	A	6.00E-34	T	A	0	0.0029	0	0.008	0.001	0.00238	T	DER	cancer	59585
rs1881797	19684603	Trevino LR	Acute lymphoblastic leukemia (childhood)	cancer	"317 European ancestry cases, 17,958 European ancestry controls"	EUR	1q44	1	247526230	1.52	C	7.00E-06	C	T	0.5779	0.2435	0.0288	0.164	0.0685	0.21654	C	ANC	cancer	18275
rs1886449	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	13q22.1	13	73357977	1.51	T	9.00E-06	C	T	0.2042	0.1916	0.3185	0.167	0.1585	0.20796	C	DER	cancer	6200
rs1894292	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	4q13.3	4	73483441	1.1	G	5.00E-13	G	A	0.68	0.6888	0.6151	0.5378	0.5143	0.6072	A	DER	cancer	22548
rs189897	19478819	Ng CC	Nasopharyngeal carcinoma	cancer	"111 Malaysian Chinese ancestry cases, 260 Malaysian Chinese ancestry controls"	EAS	3p22.2	3	37477054	3.18	A	7.00E-08	T	A	0.0136	0.1542	0.0605	0.1799	0.1155	0.10474	T	DER	cancer	371
rs1920116	24908248	Walsh KM	Glioma (high-grade)	cancer	"1,013 European ancestry cases, 6,595 European ancestry controls"	EUR	3q26.2	3	169862183	1.3	G	8.00E-09	G	A	0.8986	0.6095	0.3889	0.7097	0.6994	0.66122	G	ANC	cancer	7608
rs1933488	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	6q25.2	6	153119944	1.12	A	4.00E-18	A	G	0.5166	0.611	0.1567	0.5994	0.3712	0.45098	A	ANC	cancer	22548
rs1983891	20676098	Takata R	Prostate cancer	cancer	"1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls"	EAS	6p21.1	6	41568689	1.15	T	8.00E-08	C	T	0.5106	0.4092	0.3472	0.3042	0.3415	0.38254	C	DER	cancer	4969
rs1994816	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	4q34.3	4	180047278	1.76	A	5.00E-07	G	A	0.5076	0.3112	0.3214	0.167	0.365	0.33444	G	DER	cancer	8966
rs2005705	24740154	Lange EM	Prostate cancer (early onset)	cancer	"931 European ancestry cases, 4,120 European ancestry controls"	EUR	"17q12, 17q12[rs2005705]; 17q12[rs4430796]"	17	37736310	1.35	G	1.00E-06	A	G	0.4228	0.6326	0.751	0.5656	0.7219	0.61878	A	DER	cancer	5051
rs2014300	21642993	Wu C	Esophageal cancer	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	21q22.12	21	34985564	1.43	G	8.00E-22	A	G	0.4546	0.7147	0.88	0.8459	0.8875	0.75654	A	DER	cancer	4075
rs2014300	25129146	Wu C	Esophageal squamous cell carcinoma	cancer	"5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls"	EAS	21q22.12	21	34985564	1.28	G	8.00E-09	A	G	0.4546	0.7147	0.88	0.8459	0.8875	0.75654	A	DER	cancer	11124
rs2016394	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	2q31.1	2	172108243	1.05	G	1.00E-08	G	A	0.7678	0.5663	0.8135	0.5417	0.6575	0.66936	G	ANC	cancer	22627
rs2019960	21037568	Enciso-Mora V	Hodgkin's lymphoma	cancer	"589 European ancestry cases, 5,199 European ancestry controls"	EUR	8q24.21	8	128180025	1.33	C	1.00E-13	T	C	0.4569	0.2824	0.0744	0.2078	0.1421	0.23272	T	DER	cancer	5788
rs2039553	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	13q31.1	13	79725587	1.73	A	7.00E-06	A	G	0.3767	0.3372	0.2827	0.4781	0.5337	0.40168	A	ANC	cancer	6200
rs2041840	24292274	Speedy HE	Chronic lymphocytic leukemia	cancer	"1,739 European ancestry cases, 5,199 European ancestry controls"	EUR	2p22.2	2	37240121	1.2	C	9.00E-06	T	C	0.8502	0.8559	0.9643	0.6869	0.7188	0.81522	C	ANC	cancer	6938
rs204247	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	6p23	6	13722291	1.05	G	8.00E-09	G	A	0.3011	0.4467	0.6151	0.4225	0.4202	0.44112	A	DER	cancer	22627
rs2046210	23544013	Couch FJ	Breast Cancer in BRCA1 mutation carriers	cancer	"1,426 European ancestry cases, 1,301 European ancestry controls"	EUR	6q25.1	6	151627231	1.28	G	5.00E-09	G	A	0.3374	0.7277	0.6379	0.6789	0.682	0.61278	A	DER	cancer	2727
rs2046210	23535733	Garcia-Closas M	Breast cancer	cancer	"4,193 European ancestry cases, 35,194 European ancestry controls"	EUR	6q25.1	6	151627231	1.15	A	5.00E-16	G	A	0.6626	0.2723	0.3621	0.3211	0.318	0.38722	A	ANC	cancer	39387
rs2048672	21908515	Cai Q	Breast cancer	cancer	"2,062 East Asian ancestry cases, 2,066 East Asian ancestry controls"	EAS	7q32.3	7	130969092	1.11	C	6.00E-06	C	A	0.2035	0.536	0.4474	0.675	0.5337	0.47912	A	DER	cancer	4128
rs2055729	23502783	Weinhold N	Multiple myeloma (hyperdiploidy)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	8p23.1	8	9935152	1.3	G	8.00E-07	G	A	0.7489	0.3069	0.6429	0.3072	0.3405	0.46928	G	ANC	cancer	8966
rs2069757	24920014	Cozen W	Hodgkin's lymphoma	cancer	"1,816 European ancestry cases, 7,877 European ancestry controls"	EUR	5q31.1	5	132662721	1.59	A	2.00E-11	G	A	0.0265	0.1542	0.1468	0.0746	0.135	0.10742	G	DER	cancer	9693
rs2072499	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	1q22	1	156199819	1.19	G	3.00E-08	A	G	0.674	0.3271	0.1369	0.3618	0.2996	0.35988	G	ANC	cancer	5932
rs2074356	21642993	Wu C	Esophageal cancer	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	12q24.13	12	112207597	1.56	A	2.00E-31	G	A	0	0.0014	0.129	0	0	0.02608	G	DER	cancer	4075
rs207954	22076464	Ellinghaus E	Acute lymphoblastic leukemia (childhood)	cancer	"419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls"	EUR	15q26.1	15	92114143	1.25	C	1.00E-06	T	C	0.5356	0.8329	0.7401	0.7485	0.7096	0.71334	T	DER	cancer	900
rs2086824	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	16q24.3	16	89404838	1.58	A	2.00E-06	A	C	0.9622	0.7032	0.9583	0.5268	0.8149	0.79308	A	ANC	cancer	8966
rs2089222	19684603	Trevino LR	Acute lymphoblastic leukemia (childhood)	cancer	"317 European ancestry cases, 17,958 European ancestry controls"	EUR	12q24.22	12	116564853	2.26	A	8.00E-08	G	A	0.2648	0.3718	0.1875	0.0308	0.0204	0.17506	A	ANC	cancer	18275
rs210134	24292274	Speedy HE	Chronic lymphocytic leukemia	cancer	"1,739 European ancestry cases, 5,199 European ancestry controls"	EUR	6p21.31	6	33572432	1.31	G	3.00E-06	A	G	0.7564	0.7334	0.753	0.7127	0.7076	0.73262	G	ANC	cancer	6938
rs210138	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	6p21.31	6	33574761	1.44	G	2.00E-24	A	G	0.1528	0.2392	0.4871	0.1948	0.4376	0.3023	G	ANC	cancer	5932
rs210142	22700719	Slager SL	Chronic lymphocytic leukemia	cancer	"1,121 European ancestry cases, 3,745 European ancestry controls"	EUR	6p21.31	6	33579060	1.4	C	9.00E-16	T	C	0.761	0.7565	0.8274	0.7266	0.8712	0.78854	C	ANC	cancer	4866
rs2121875	21743467	Kote-Jarai Z	Prostate cancer	cancer	"6,621 European ancestry cases, 6,939 European ancestry controls"	EUR	5p12	5	44365443	1.05	C	4.00E-08	C	A	0.7663	0.5821	0.5327	0.337	0.3875	0.52112	C	ANC	cancer	13560
rs2131877	20876614	Yoon KA	Non-small cell lung cancer	cancer	"621 Korean ancestry cases, 1,541 Korean ancestry controls"	EAS	3q29	3	195137645	1.3	G	2.00E-08	G	A	0.7905	0.7522	0.4256	0.8141	0.6922	0.69492	G	ANC	cancer	2162
rs214782	24403052	Stacey SN	Basal cell carcinoma	cancer	"4,208 European ancestry cases, 109,408 European ancestry controls"	EUR	20p13	20	2301324	1.29	G	6.00E-17	G	A	0.5908	0.1671	0.0744	0.162	0.1524	0.22934	G	ANC	cancer	113616
rs2167364	22076464	Ellinghaus E	Acute lymphoblastic leukemia (childhood)	cancer	"419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls"	EUR	7p12.2	7	50498129	1.32	C	2.00E-08	T	C	0.2231	0.3199	0.1032	0.3658	0.3364	0.26968	C	ANC	cancer	900
rs2178146	24121790	Levine DM	Esophageal adenocarcinoma	cancer	"1,516 European ancestry cases, 3,209 European ancestry controls"	EUR	16q24.1	16	86430089	1.1765	T	4.00E-06	T	C	0.9917	0.6095	0.7758	0.6034	0.7198	0.74004	T	ANC	cancer	4725
rs2180341	18326623	Gold B	Breast cancer	cancer	"249 Ashkenazi Jewish non-BRCA1/2 carriers cases, 299 Ashkenazi Jewish non-BRCA1/2 carriers controls"	EUR	6q22.33	6	127279485	1.41	G	3.00E-08	G	A	0.3048	0.2349	0.1974	0.2803	0.4121	0.2859	A	DER	cancer	554
rs2191566	19684603	Trevino LR	Acute lymphoblastic leukemia (childhood)	cancer	"317 European ancestry cases, 17,958 European ancestry controls"	EUR	19q13.31	19	44007237	1.52	G	4.00E-07	G	T	0.5219	0.6023	0.7103	0.2992	0.2751	0.48176	T	DER	cancer	18275
rs2235544	23502783	Weinhold N	Multiple myeloma (hyperdiploidy)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	1p32.3	1	53909897	1.3	A	6.00E-07	C	A	0.1626	0.6412	0.4613	0.5249	0.6667	0.49134	C	DER	cancer	8966
rs2236007	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	14q13.3	14	36663564	1.08	G	2.00E-13	G	A	0.9644	0.879	0.6845	0.7833	0.8303	0.8283	G	ANC	cancer	22627
rs2239612	22960999	Wu C	Esophageal cancer (squamous cell)	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	3q27.3	3	187075454	1.21	A	6.00E-14	G	A	0.2958	0.2464	0.1667	0.1143	0.1084	0.18632	G	DER	cancer	4075
rs2239633	22076464	Ellinghaus E	Acute lymphoblastic leukemia (childhood)	cancer	"419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls"	EUR	14q11.2	14	23119848	1.3513513	G	4.00E-10	G	A	0.826	0.5548	0.6498	0.5169	0.6115	0.6318	G	ANC	cancer	900
rs2242652	21743467	Kote-Jarai Z	Prostate cancer	cancer	"6,621 European ancestry cases, 6,939 European ancestry controls"	EUR	5p15.33	5	1279913	1.15	G	3.00E-24	G	A	0.8744	0.8501	0.8333	0.7883	0.817	0.83262	G	ANC	cancer	13560
rs224278	22327514	Postel-Vinay S	Ewing sarcoma	cancer	"Up to 427 European ancestry cases, up to 4,352 European ancestry controls"	EUR	10q21.3	10	62820815	1.66	C	4.00E-17	C	T	0.7882	0.4424	0.4395	0.5706	0.5532	0.55878	C	ANC	cancer	4779
rs225190	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	17q11.2	17	32550640	1.26	C	6.00E-06	C	T	0.1498	0.4164	0.3313	0.4016	0.2761	0.31504	C	ANC	cancer	6200
rs2252586	21531791	Sanson M	Glioma	cancer	"4,147 European ancestry cases, 7,435 European ancestry controls"	EUR	7p11.2	7	54911231	1.18	T	8.00E-08	C	T	0.2791	0.1772	0.0188	0.2813	0.138	0.17888	T	ANC	cancer	11582
rs2257205	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	17q22	17	58370936	1.38	T	8.00E-06	C	T	0.1831	0.1009	0.373	0.1163	0.3354	0.22174	C	DER	cancer	6200
rs2272007	23502783	Weinhold N	Multiple myeloma (hyperdiploidy)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	3p22.1	3	41954644	1.47	T	2.00E-09	T	C	0.7179	0.1902	0.1488	0.1909	0.1728	0.28412	T	ANC	cancer	8966
rs2273669	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	6q21	6	108963986	1.07	G	8.00E-09	A	G	0.3525	0.0937	0.0754	0.1581	0.2474	0.18542	G	ANC	cancer	22548
rs2274223	25129146	Wu C	Esophageal squamous cell carcinoma	cancer	"5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls"	EAS	10q23.33	10	94306584	1.35	G	4.00E-18	A	G	0.3797	0.2133	0.2391	0.338	0.2699	0.288	G	ANC	cancer	11124
rs2274223	21642993	Wu C	Esophageal cancer	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	10q23.33	10	94306584	1.34	G	4.00E-20	A	G	0.3797	0.2133	0.2391	0.338	0.2699	0.288	G	ANC	cancer	4075
rs2284378	22976474	Siddiq A	Breast cancer	cancer	"3,666 European ancestry cases, 28,864 European ancestry controls, 1,004 African American cases, 2,744 African American controls"	MIX	20q11.22	20	34000289	1.16	T	1.00E-08	T	C	0.1331	0.3458	0.1667	0.2922	0.1442	0.2164	C	DER	cancer	36278
rs2285803	23955597	Chubb D	Multiple myeloma	cancer	"2,335 European ancestry cases, 7,306 European ancestry controls"	EUR	6p21.33	6	31139481	1.192	T	1.00E-10	T	C	0.261	0.2248	0.3036	0.2604	0.2955	0.26906	C	DER	cancer	9641
rs2285947	23103227	Jin G	"Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)"	cancer	"2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls"	EUR	7p15.3	7	21544470	1.17	A	1.00E-16	G	A	0.4418	0.3775	0.253	0.4811	0.4775	0.40618	G	DER	cancer	9374
rs2290203	25038754	Cai Q	Breast cancer	cancer	"2,867 Chinese ancestry cases, 2,285 Chinese ancestry controls, 2,246 Korean ancestry cases, 2,052 Korean ancestry controls"	EAS	15q26.1	15	90968837	1.08	G	4.00E-08	G	A	0.5635	0.7046	0.4871	0.7853	0.6278	0.63366	A	DER	cancer	9450
rs2290854	23544013	Couch FJ	Breast Cancer in BRCA1 mutation carriers	cancer	"1,426 European ancestry cases, 1,301 European ancestry controls"	EUR	1q32.1	1	204546897	1.13	A	1.00E-07	A	G	0.7844	0.389	0.2976	0.3082	0.3988	0.4356	G	DER	cancer	2727
rs2292884	21743057	Schumacher FR	Prostate cancer	cancer	"2,782 European ancestry cases, 4,458 European ancestry controls"	EUR	2q37.3	2	237534583	1.14	G	4.00E-08	A	G	0.621	0.3098	0.2748	0.2097	0.3436	0.35178	G	ANC	cancer	7240
rs2294008	20972438	Rothman N	Bladder cancer	cancer	"3,532 European ancestry cases, 5,120 European ancestry controls"	EUR	8q24.3	8	142680513	1.13	T	4.00E-11	C	T	0.3676	0.5043	0.3423	0.4473	0.407	0.4137	T	ANC	cancer	8652
rs2302777	23502783	Weinhold N	Multiple myeloma (hyperdiploidy)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	17q21.1	17	40023239	1.31	A	8.00E-07	A	G	0.9463	0.5865	0.5774	0.6332	0.5685	0.66238	G	DER	cancer	8966
rs2352028	20304703	Li Y	Lung cancer	cancer	"364 European ancestry cases, 364 European ancestry controls, 13 cases, 13 controls"	EUR	13q31.3	13	91792975	1.46	T	6.00E-06	C	T	0.5885	0.3804	0.2679	0.2773	0.1656	0.33594	T	ANC	cancer	754
rs2380205	20453838	Turnbull C	Breast cancer	cancer	"3,659 European ancestry cases, 4,897 European ancestry controls"	EUR	10p15.1	10	5844771	1.06	C	5.00E-07	C	T	0.3563	0.7017	0.87	0.5567	0.7515	0.64724	C	ANC	cancer	8556
rs2395185	23143601	Lan Q	Lung cancer	cancer	"5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls"	EAS	"6p21.32, 6p21.32[rs2395185]; 6p21.32[rs28366298]"	6	32465390	1.17	T	1.00E-08	G	T	0.1921	0.4107	0.3105	0.3211	0.2986	0.3066	G	DER	cancer	10054
rs2423279	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	20p12.3	20	7831703	1.13	C	3.00E-12	T	C	0.385	0.2867	0.3333	0.2714	0.5194	0.35916	T	DER	cancer	8270
rs2427308	24737748	Whiffin N	Colorectal cancer	cancer	"5,626 European ancestry cases, 7,817 European ancestry controls"	EUR	20q13.33	20	62394395	1.235	C	3.00E-11	C	T	0.795	0.7334	0.8502	0.7664	0.8241	0.79382	C	ANC	cancer	13443
rs2427345	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	20q13.33	20	62440555	1.06	C	4.00E-08	C	T	0.4697	0.6066	0.8075	0.6282	0.454	0.5932	T	DER	cancer	22548
rs2439302	22267200	Gudmundsson J	Thyroid cancer	cancer	"27,758 European ancestry individuals"	EUR	8p12	8	32574851	1.36	G	2.00E-09	G	C	0.4924	0.5	0.1815	0.4722	0.4121	0.41164	C	DER	cancer	27758
rs2458413	21623375	Albagha OM	Paget's disease	cancer	"741 European ancestry cases, 2,699 European ancestry controls"	EUR	8q22.3	8	104347204	1.4	T	7.00E-17	C	T	0.174	0.3242	0.2143	0.5825	0.4652	0.35204	C	DER	cancer	3440
rs2466024	24292274	Speedy HE	Chronic lymphocytic leukemia	cancer	"1,739 European ancestry cases, 5,199 European ancestry controls"	EUR	8q24.21	8	127175774	1.21	A	3.00E-06	G	A	0.6543	0.4568	0.5556	0.3728	0.3323	0.47436	A	ANC	cancer	6938
rs2466035	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	"8q24.21, 8q24.21[rs2466035]; 8q24.21[rs2456449]"	8	127198984	1.21	C	2.00E-08	T	C	0.7118	0.4121	0.4494	0.3062	0.272	0.4303	C	ANC	cancer	8400
rs2494938	23103227	Jin G	"Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)"	cancer	"2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls"	EAS	6p21.1	6	40568389	1.15	A	1.00E-12	G	A	0.5635	0.3833	0.2728	0.5209	0.5879	0.46568	G	DER	cancer	9374
rs2495478	22544364	Turnbull C	Wilms tumor	cancer	"757 European ancestry cases, 1,879 European ancestry controls"	EUR	1p32.3	1	55047322	1.4	A	1.00E-07	G	A	0.3238	0.1196	0.0694	0.0507	0.0215	0.117	G	DER	cancer	2636
rs2500488	25134534	Chen K	Epithelial ovarian cancer	cancer	"1,044 Han Chinese ancestry cases, 1,172 Han Chinese ancestry controls"	EAS	1q44	1	244077146	1.472	C	4.00E-06	C	T	0.7405	0.1844	0.3968	0.2465	0.3211	0.37786	C	ANC	cancer	2216
rs2511714	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	8q22.3	8	102566646	1.19	G	5.00E-08	T	G	0.4788	0.3458	0.1111	0.4036	0.18	0.30386	G	ANC	cancer	8400
rs2517713	19664746	Tse KP	Nasopharyngeal carcinoma	cancer	"277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls"	EAS	6p22.1	6	29950322	1.88	T	4.00E-20	G	T	0.6982	0.7738	0.6865	0.6302	0.6115	0.68004	T	ANC	cancer	562
rs258322	19578364	Bishop DT	Melanoma	cancer	"1,539 European ancestry cases, 3,917 European ancestry controls"	EUR	16q24.3	16	89689495	1.67	A	3.00E-27	A	G	0.1952	0.1657	0.6161	0.0984	0.092	0.23348	G	DER	cancer	5456
rs2588809	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	14q24.1	14	68193711	1.08	T	1.00E-10	T	C	0.3086	0.1744	0.0278	0.1879	0.1748	0.1747	T	ANC	cancer	22627
rs2608053	21037568	Enciso-Mora V	Hodgkin's lymphoma	cancer	"589 European ancestry cases, 5,199 European ancestry controls"	EUR	8q24.21	8	128063586	1.2	C	1.00E-07	T	C	0.3759	0.5346	0.7431	0.5467	0.5941	0.55888	C	ANC	cancer	5788
rs2660753	18264097	Eeles RA	Prostate cancer	cancer	"1,854 European ancestry cases, 1,894 European ancestry controls"	EUR	3p12.1	3	87061524	1.18	T	3.00E-08	T	C	0.5855	0.1628	0.2708	0.1083	0.2065	0.26678	T	ANC	cancer	3748
rs2665390	23544013	Couch FJ	Ovarian cancer in BRCA1 mutation carriers	cancer	"683 European ancestry cases, 2,044 European ancestry controls"	EUR	3q25.31	3	156679960	1.46	C	7.00E-06	C	T	0.0817	0.0375	0.0298	0.0795	0.093	0.0643	C	ANC	cancer	2727
rs2681416	25279986	Skibola CF	Follicular lymphoma	cancer	"2,728 European ancestry cases, 7,758 European ancestry controls"	EUR	3q13.33	3	122098766	1.16	A	2.00E-07	G	A	0.1543	0.183	0.1339	0.2694	0.2423	0.19658	G	DER	cancer	10486
rs2687201	24121790	Levine DM	Esophageal adenocarcinoma	cancer	"1,516 European ancestry cases, 3,209 European ancestry controls"	EUR	3p13	3	70879779	1.2	A	6.00E-07	A	C	0.7519	0.2824	0.4921	0.3171	0.2924	0.42718	A	ANC	cancer	4725
rs2689154	22158540	Wu C	Pancreatic cancer	cancer	"981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls"	EAS	1q43	1	238745053	1.2	G	6.00E-06	C	G	0.3169	0.2147	0.1885	0.3777	0.1339	0.24634	C	DER	cancer	2972
rs2720460	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	4q24	4	103133529	1.24	A	2.00E-10	A	G	0.7042	0.6671	0.7044	0.5994	0.5859	0.6522	G	DER	cancer	5932
rs2735839	18264097	Eeles RA	Prostate cancer	cancer	"1,854 European ancestry cases, 1,894 European ancestry controls"	EUR	19q13.33	19	50861367	1.2	G	2.00E-18	A	G	0.6089	0.7363	0.5585	0.8598	0.6534	0.68338	A	DER	cancer	3748
rs2736098	25086665	Wolpin BM	Pancreatic cancer	cancer	"1,582 European ancestry cases, 5,203 European ancestry controls"	EUR	5p15.33	5	1293972	1.25	C	1.00E-13	C	T	0.9342	0.7968	0.629	0.7654	0.4969	0.72446	C	ANC	cancer	6785
rs2736100	20543847	Turnbull C	Testicular germ cell cancer	cancer	"979 European ancestry cases, 4,947 European ancestry controls"	EUR	5p15.33	5	1286401	1.33	A	8.00E-15	C	A	0.5325	0.572	0.5853	0.501	0.3947	0.5171	A	ANC	cancer	5926
rs2736100	19578367	Shete S	Glioma	cancer	"1,878 European ancestry cases, 3,670 European ancestry controls"	EUR	5p15.33	5	1286401	1.27	C	2.00E-17	C	A	0.4675	0.428	0.4147	0.499	0.6053	0.4829	A	DER	cancer	5548
rs2736100	20700438	Hsiung CA	Lung adenocarcinoma	cancer	"584 East Asian ancestry cases, 585 East Asian ancestry controls"	EAS	5p15.33	5	1286401	1.46	C	2.00E-22	C	A	0.4675	0.428	0.4147	0.499	0.6053	0.4829	A	DER	cancer	1169
rs2736100	21725308	Hu Z	Lung cancer	cancer	"2,331 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls"	EAS	5p15.33	5	1286401	1.27	C	1.00E-27	C	A	0.4675	0.428	0.4147	0.499	0.6053	0.4829	A	DER	cancer	5408
rs2736100	24908248	Walsh KM	Glioma (high-grade)	cancer	"1,013 European ancestry cases, 6,595 European ancestry controls"	EUR	5p15.33	5	1286401	1.39	C	1.00E-15	C	A	0.4675	0.428	0.4147	0.499	0.6053	0.4829	A	DER	cancer	7608
rs2823093	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	21q21.1	21	15148511	1.09	G	7.00E-16	G	A	0.5257	0.7061	0.9563	0.7406	0.7607	0.73788	A	DER	cancer	22627
rs282708	22076464	Ellinghaus E	Acute lymphoblastic leukemia (childhood)	cancer	"419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls"	EUR	4q13.1	4	58637561	1.23	A	8.00E-06	A	G	0.4796	0.5029	0.7688	0.4284	0.5317	0.54228	A	ANC	cancer	900
rs2839186	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	21q22.3	21	46270154	1.26	T	1.00E-09	C	T	0.289	0.513	0.2778	0.4324	0.3916	0.38076	T	ANC	cancer	5932
rs2847281	22960999	Wu C	Esophageal cancer (squamous cell)	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	18p11.21	18	12821594	1.2	G	2.00E-11	A	G	0.0847	0.4179	0.1329	0.4135	0.2086	0.25152	A	DER	cancer	4075
rs2853676	19578367	Shete S	Glioma	cancer	"1,878 European ancestry cases, 3,670 European ancestry controls"	EUR	5p15.33	5	1288432	1.26	T	4.00E-14	T	C	0.2292	0.2507	0.1657	0.2753	0.3446	0.2531	C	DER	cancer	5548
rs2853677	22797724	Shiraishi K	Lung adenocarcinoma	cancer	"1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls"	EAS	5p15.33	5	1287079	1.41	G	3.00E-40	G	A	0.2625	0.3545	0.3641	0.4135	0.5777	0.39446	A	DER	cancer	7028
rs2900333	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	12p13.1	12	14500933	1.32	C	1.00E-13	C	T	0.9826	0.5317	0.7421	0.6511	0.6135	0.7042	C	ANC	cancer	5932
rs2900333	20543847	Turnbull C	Testicular germ cell cancer	cancer	"979 European ancestry cases, 4,947 European ancestry controls"	EUR	12p13.1	12	14500933	1.27	C	6.00E-10	C	T	0.9826	0.5317	0.7421	0.6511	0.6135	0.7042	C	ANC	cancer	5926
rs29232	19664746	Tse KP	Nasopharyngeal carcinoma	cancer	"277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls"	EAS	6p22.1	6	29643654	1.67	T	9.00E-17	C	T	0.3616	0.4957	0.5119	0.3588	0.6902	0.48364	T	ANC	cancer	562
rs2943559	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	"8q21.11, 8q21.13"	8	75505702	1.13	G	6.00E-15	A	G	0.2511	0.0836	0.0764	0.0666	0.0675	0.10904	A	DER	cancer	22627
rs2957128	20436471	Albagha OM	Paget's disease	cancer	"692 European ancestry cases, 1,001 European ancestry controls"	EUR	18q21.33	18	62393502	1.46	A	2.00E-11	A	G	0.3828	0.4452	0.7659	0.4374	0.411	0.48846	G	DER	cancer	1693
rs2981578	24143190	Low SK	Breast cancer	cancer	"2,642 Japanese ancestry cases, 2,099 Japanese ancestry controls"	EAS	10q26.13	10	121580797	1.225	C	1.00E-12	C	T	0.9221	0.5115	0.5645	0.5189	0.4908	0.60156	C	ANC	cancer	4741
rs2981579	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	10q26.13	10	121577821	1.27	A	2.00E-170	A	G	0.6611	0.4265	0.4494	0.4513	0.3885	0.47536	G	DER	cancer	22627
rs2981582	17529967	Easton DF	Breast cancer	cancer	"390 cases,364 controls"	EUR	10q26.13	10	121592803	1.26	A	2.00E-76	A	G	0.4947	0.4179	0.3165	0.4205	0.3436	0.39864	G	DER	cancer	754
rs3016539	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	6q26	6	161815043	1.5	T	7.00E-06	C	T	0.9221	0.9251	0.9087	0.8797	0.7607	0.87926	T	ANC	cancer	6200
rs3018362	21623375	Albagha OM	Paget's disease	cancer	"741 European ancestry cases, 2,699 European ancestry controls"	EUR	18q21.33	18	62414860	1.45	A	8.00E-21	A	G	0.1793	0.3718	0.7202	0.3678	0.2935	0.38652	G	DER	cancer	3440
rs3096299	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	16q24.3	16	89382255	1.54	G	4.00E-06	G	A	0.4939	0.4914	0.3899	0.4274	0.4642	0.45336	A	DER	cancer	8966
rs3096702	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	6p21.32	6	32224554	1.07	A	5.00E-09	A	G	0.1422	0.3458	0.1716	0.3598	0.1922	0.24232	G	DER	cancer	22548
rs3112612	21263130	Fletcher O	Breast cancer	cancer	"2,839 European ancestry cases, 3,507 European ancestry controls"	EUR	16q12.2	16	52601252	1.15	A	4.00E-10	G	A	0.4153	0.5692	0.7976	0.4284	0.456	0.5333	A	ANC	cancer	6346
rs3117582	19836008	Landi MT	Lung adenocarcinoma	cancer	"5,739 European ancestry cases, 5,848 European ancestry controls"	EUR	6p21.33	6	31652743	1.22	G	5.00E-12	T	G	0.0303	0.0216	0	0.0746	0	0.0253	T	DER	cancer	11587
rs3129055	19664746	Tse KP	Nasopharyngeal carcinoma	cancer	"277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls"	EAS	6p22.1	6	29702484	1.51	G	7.00E-11	A	G	0.2156	0.3444	0.3492	0.2167	0.3875	0.30268	G	ANC	cancer	562
rs31489	19836008	Landi MT	Lung adenocarcinoma	cancer	"5,739 European ancestry cases, 5,848 European ancestry controls"	EUR	5p15.33	5	1342599	1.12	C	2.00E-10	C	A	0.5144	0.7219	0.8095	0.5915	0.8323	0.69392	C	ANC	cancer	11587
rs3217810	23266556	Peters U	Colorectal cancer	cancer	"12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls"	EUR	12p13.32	12	4279105	1.2	T	6.00E-08	C	T	0.0053	0.0821	0.0109	0.1213	0.0767	0.05926	C	DER	cancer	27809
rs3217901	23266556	Peters U	Colorectal cancer	cancer	"12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls"	EUR	12p13.32	12	4296223	1.1	G	3.00E-07	A	G	0.0877	0.5173	0.5774	0.3807	0.502	0.41302	A	DER	cancer	27809
rs3219090	21983785	Macgregor S	Melanoma	cancer	"2,168 European ancestry cases, 4,387 European ancestry controls"	EUR	1q42.12	1	226376990	1.15	C	9.00E-08	T	C	0.438	0.4971	0.2054	0.6759	0.6288	0.48904	T	DER	cancer	6555
rs339331	20676098	Takata R	Prostate cancer	cancer	"1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls"	EAS	6q22.1	6	116888889	1.22	T	2.00E-12	T	C	0.7564	0.7392	0.6032	0.6899	0.591	0.67594	T	ANC	cancer	4969
rs34245511	24737748	Whiffin N	Colorectal cancer	cancer	"5,626 European ancestry cases, 7,817 European ancestry controls"	EUR	12q13.12	12	50179650	1.144	C	3.00E-08	G	C	0.475	0.2363	0.1925	0.3618	0.4387	0.34086	G	DER	cancer	13443
rs34289250	21964575	Rafnar T	Ovarian cancer	cancer	"640 European ancestry cases, 41,607 European ancestry controls"	EUR	17q23.2	17	61803285	7.95	C	6.00E-13	T	C	0	0.0014	0	0.0109	0.0031	0.00308	T	DER	cancer	42247
rs35597309	25129146	Wu C	Esophageal squamous cell carcinoma	cancer	"5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls"	EAS	6p21.32	6	32621489	1.19	A	1.00E-07	G	A	0.0734	0.0303	0.1131	0.0427	0.1309	0.07808	G	DER	cancer	11124
rs3734805	21263130	Fletcher O	Breast cancer	cancer	"2,839 European ancestry cases, 3,507 European ancestry controls"	EUR	6q25.1	6	151618215	1.19	C	1.00E-07	A	C	0.031	0.062	0.3155	0.0785	0.046	0.1066	A	DER	cancer	6346
rs3750817	22951594	Elgazzar S	Breast cancer	cancer	"1,086 Japanese ancestry cases, 1,816 Japanese ancestry controls"	EAS	10q26.13	10	121573063	1.22	T	8.00E-08	C	T	0.0484	0.3732	0.5198	0.3787	0.4663	0.35728	C	DER	cancer	2902
rs3751913	25279986	Skibola CF	Follicular lymphoma	cancer	"2,728 European ancestry cases, 7,758 European ancestry controls"	EUR	17q25.3	17	82447676	1.23	C	2.00E-07	T	C	0.2542	0.3674	0.25	0.1262	0.2781	0.25518	C	ANC	cancer	10486
rs3755132	22544364	Turnbull C	Wilms tumor	cancer	"757 European ancestry cases, 1,879 European ancestry controls"	EUR	2p24.3	2	15589696	1.45	G	1.00E-14	T	G	0.587	0.2305	0.1925	0.1521	0.3006	0.29254	G	ANC	cancer	2636
rs3757318	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	6q25.1	6	151592978	1.16	A	2.00E-21	G	A	0.0234	0.0533	0.2579	0.0795	0.044	0.09162	G	DER	cancer	22627
rs3760982	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	19q13.31	19	43782361	1.06	A	2.00E-10	A	G	0.4644	0.3098	0.1895	0.4573	0.5879	0.40178	G	DER	cancer	22627
rs3765524	20729852	Abnet CC	Esophageal cancer and gastric cancer	cancer	"1,625 Chinese ancestry gastric cancer cases, 1,898 Chinese ancestry ESCC cases, 2,100 Chinese ancestry controls"	EAS	10q23.33	10	94298541	1.35	T	2.00E-09	C	T	0.4561	0.2104	0.2381	0.3091	0.2474	0.29222	T	ANC	cancer	5623
rs3768716	21124317	Wang K	Neuroblastoma	cancer	"1,627 European ancestry child cases, 3,254 European ancestry child controls"	EUR	2q35	2	214771070	1.386	C	5.00E-13	T	C	0.0219	0.1801	0.1915	0.1839	0.2444	0.16436	T	DER	cancer	4881
rs3769825	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	2q33.1	2	201246657	1.19	A	3.00E-09	A	G	0.6543	0.5562	0.8026	0.4692	0.7454	0.64554	G	DER	cancer	8400
rs3771570	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	2q37.3	2	241443449	1.12	T	5.00E-09	C	T	0.0061	0.1441	0.1181	0.1392	0.091	0.0997	C	DER	cancer	22548
rs3781264	20729852	Abnet CC	Esophageal cancer and gastric cancer	cancer	"1,625 Chinese ancestry gastric cancer cases, 1,898 Chinese ancestry ESCC cases, 2,100 Chinese ancestry controls"	EAS	10q23.33	10	94310618	1.36	G	4.00E-09	A	G	0.1982	0.1801	0.2044	0.3032	0.2014	0.21746	A	DER	cancer	5623
rs3790672	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	1q24.1	1	165904155	1.2	C	2.00E-08	T	C	0.0567	0.3977	0.5218	0.2962	0.2198	0.29844	T	DER	cancer	5932
rs3790844	20101243	Petersen GM	Pancreatic cancer	cancer	"3,851 European, Chinese and other ancestry cases, 3,934 European, Chinese and other ancestry controls"	MIX	1q32.1	1	200038304	1.3	A	2.00E-10	A	G	0.8911	0.5965	0.3512	0.7604	0.5307	0.62598	A	ANC	cancer	7785
rs3802842	18372901	Tenesa A	Colorectal cancer	cancer	"981 European ancestry cases, 1,002 European ancestry controls"	EUR	11q23.1	11	111300984	1.11	C	6.00E-10	C	A	0.3517	0.1888	0.3978	0.2694	0.1708	0.2757	C	ANC	cancer	1983
rs3803662	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	16q12.1	16	52552429	1.24	A	2.00E-114	A	G	0.5673	0.3905	0.619	0.2913	0.273	0.42822	G	DER	cancer	22627
rs3805663	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	5q31.1	5	135030510	1.25	A	2.00E-08	A	G	0.1929	0.4496	0.5228	0.6243	0.4949	0.4569	G	DER	cancer	5932
rs3806624	24149102	Frampton M	Hodgkin's lymphoma	cancer	"1,465 European ancestry cases, 6,417 European ancestry controls"	EUR	3p24.1	3	27723132	1.26	G	1.00E-12	A	G	0.8752	0.6484	0.8492	0.4672	0.7771	0.72342	G	ANC	cancer	7882
rs3814113	23544013	Couch FJ	Ovarian cancer in BRCA1 mutation carriers	cancer	"683 European ancestry cases, 2,044 European ancestry controls"	EUR	9p22.2	9	16915023	1.3	T	6.00E-11	T	C	0.385	0.4308	0.7302	0.6938	0.5552	0.559	C	DER	cancer	2727
rs3814113	19648919	Song H	Ovarian cancer	cancer	"1,817 European ancestry cases, 2,353 European ancestry controls"	EUR	9p22.2	9	16915023	1.22	T	5.00E-19	T	C	0.385	0.4308	0.7302	0.6938	0.5552	0.559	C	DER	cancer	4170
rs3817198	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	11p15.5	11	1887776	1.07	C	2.00E-11	T	C	0.1369	0.1816	0.1032	0.3141	0.3599	0.21914	T	DER	cancer	22627
rs3817963	22797724	Shiraishi K	Lung adenocarcinoma	cancer	"1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls"	EAS	6p21.32	6	32400310	1.18	C	3.00E-10	T	C	0.1679	0.3256	0.2312	0.2763	0.3333	0.26686	T	DER	cancer	7028
rs3824662	23996088	Migliorini G	Acute lymphoblastic leukemia (B-cell precursor)	cancer	"1,658 European ancestry child cases, 4,723 European ancestry controls"	EUR	10p14	10	8062245	1.31	A	9.00E-12	C	A	0.0764	0.3646	0.2688	0.1928	0.1656	0.21364	C	DER	cancer	6381
rs3824662	25468567	Perez-Andreu V	Acute lymphoblastic leukemia (adolescents and young adults)	cancer	"99 European ancestry cases, 1,381 European ancestry controls, 15 African American cases, 1,363 African American controls, 76 Hispanic cases, 1,008 Hispanic controls, 118 other ancestry cases, 2,909 other ancestry controls"	MIX	10p14	10	8062245	1.77	A	3.00E-10	C	A	0.0764	0.3646	0.2688	0.1928	0.1656	0.21364	C	DER	cancer	6969
rs3850699	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	10q24.32	10	102654464	1.1	A	5.00E-10	A	G	0.6089	0.8012	0.8274	0.6968	0.8763	0.76212	A	ANC	cancer	22548
rs3899697	24700089	Miura K	Cervical cancer	cancer	"226 Japanese ancestry cases, 186 Japanese ancestry controls"	EAS	7q21.13	7	88970471	1.949	A	9.00E-06	T	A	0.1952	0.4323	0.3353	0.4205	0.364	0.34946	T	DER	cancer	412
rs3903072	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	11q13.1	11	65815595	1.05	G	9.00E-12	G	T	0.8873	0.7003	0.7718	0.5398	0.453	0.67044	G	ANC	cancer	22627
rs391023	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	"16q24.1, 16q24.1[rs391023]; 16q24.1[rs2292982]"	16	85894208	1.33	C	5.00E-17	C	T	0.2148	0.6297	0.5873	0.6203	0.6636	0.54314	T	DER	cancer	8400
rs3942852	22076464	Ellinghaus E	Acute lymphoblastic leukemia (childhood)	cancer	"419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls"	EUR	11p11.2	11	48093537	1.2987013	T	1.00E-06	C	T	0.4228	0.8084	0.8036	0.7942	0.8415	0.7341	T	ANC	cancer	900
rs401681	19151717	Rafnar T	Basal cell carcinoma	cancer	"1,505 European ancestry cases, 28,890 European ancestry controls"	EUR	5p15.33	5	1321972	1.25	C	4.00E-12	C	T	0.3956	0.5663	0.6806	0.5586	0.8047	0.60116	T	DER	cancer	30395
rs401681	24163127	Figueroa JD	Bladder cancer	cancer	"up to 2,305 European ancestry cases, up to 3,901 European ancestry controls"	EUR	5p15.33	5	1321972	1.12	C	4.00E-11	C	T	0.3956	0.5663	0.6806	0.5586	0.8047	0.60116	T	DER	cancer	6206
rs401681	21983787	Barrett JH	Melanoma	cancer	"2,804 European ancestry cases, 7,618 European ancestry controls"	EUR	5p15.33	5	1321972	1.2	T	3.00E-08	C	T	0.6044	0.4337	0.3194	0.4414	0.1953	0.39884	T	ANC	cancer	10422
rs401681	20101243	Petersen GM	Pancreatic cancer	cancer	"3,851 European, Chinese and other ancestry cases, 3,934 European, Chinese and other ancestry controls"	MIX	5p15.33	5	1321972	1.19	T	7.00E-07	C	T	0.6044	0.4337	0.3194	0.4414	0.1953	0.39884	T	ANC	cancer	7785
rs4072037	20729852	Abnet CC	Esophageal cancer and gastric cancer	cancer	"1,625 Chinese ancestry gastric cancer cases, 1,898 Chinese ancestry ESCC cases, 2,100 Chinese ancestry controls"	EAS	1q22	1	155192276	1.33	T	4.00E-07	C	T	0.6044	0.7133	0.7619	0.5477	0.5481	0.63508	T	ANC	cancer	5623
rs41322152	23007406	Yang JJ	Acute lymphoblastic leukemia (childhood)	cancer	"1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases"	MIX	10q22.1	10	70281049	2.52	C	8.00E-06	G	C	0.1089	0.0144	0	0	0	0.02466	G	DER	cancer	1268
rs4132601	19684604	Papaemmanuil E	Acute lymphoblastic leukemia (childhood)	cancer	"907 European ancestry cases, 2,398 European ancestry controls"	EUR	7p12.2	7	50402906	1.69	G	1.00E-19	T	G	0.1747	0.2334	0.1081	0.3181	0.2935	0.22556	T	DER	cancer	3305
rs4242382	18264096	Thomas G	Prostate cancer	cancer	"1,172 European ancestry cases, 1,157 European ancestry controls"	EUR	8q24.21	8	127505328	1.66	A	3.00E-19	A	G	0.3646	0.0908	0.1528	0.1054	0.136	0.16992	A	ANC	cancer	2329
rs4242384	18264097	Eeles RA	Prostate cancer	cancer	"1,854 European ancestry cases, 1,894 European ancestry controls"	EUR	8q24.21	8	127506309	1.88	C	3.00E-16	C	A	0.1589	0.0793	0.1339	0.1014	0.1339	0.12148	A	DER	cancer	3748
rs4245595	25310577	Evans TJ	Acute lymphoblastic leukemia (childhood)	cancer	"358 European ancestry cases, 1,192 European ancestry controls"	EUR	10q21.2	10	61963136	1.63	C	2.00E-09	C	T	0.1982	0.4726	0.3601	0.327	0.5153	0.37464	T	DER	cancer	1550
rs4245739	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	1q32.1	1	204549714	1.1	A	2.00E-11	C	A	0.7685	0.7147	0.9504	0.7396	0.7382	0.78228	A	ANC	cancer	22548
rs4294134	21623375	Albagha OM	Paget's disease	cancer	"741 European ancestry cases, 2,699 European ancestry controls"	EUR	7q33	7	135608380	1.45	G	8.00E-10	A	G	0.646	0.6124	0.5099	0.8489	0.8517	0.69378	G	ANC	cancer	3440
rs4295627	19578367	Shete S	Glioma	cancer	"1,878 European ancestry cases, 3,670 European ancestry controls"	EUR	8q24.21	8	129673211	1.36	G	2.00E-18	T	G	0.1369	0.2305	0.2272	0.1769	0.1973	0.19376	T	DER	cancer	5548
rs4322600	22923054	Chen F	Breast cancer	cancer	"3,016 African American cases, 2,745 African American controls"	AFR	14q31.3	14	87829256	1.18	G	4.00E-06	A	G	0.8079	0.8386	0.9464	0.7336	0.8517	0.83564	G	ANC	cancer	5761
rs4336470	22941191	Diskin SJ	Neuroblastoma	cancer	"2,101 European ancestry cases, 4,202 European ancestry controls"	EUR	6q16.3	6	104732910	1.26	C	3.00E-11	C	T	0.2284	0.6542	0.7421	0.6521	0.7147	0.5983	T	DER	cancer	6303
rs4368253	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	18q21.32	18	59955055	1.19	C	3.00E-08	T	C	0.6785	0.6354	0.7222	0.6779	0.5838	0.65956	C	ANC	cancer	8400
rs4406737	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	10q23.31	10	88999967	1.27	G	1.00E-14	A	G	0.326	0.4697	0.503	0.5527	0.5532	0.48092	G	ANC	cancer	8400
rs4415084	21263130	Fletcher O	Breast cancer	cancer	"2,839 European ancestry cases, 3,507 European ancestry controls"	EUR	5p12	5	44662413	1.17	T	8.00E-11	C	T	0.6498	0.5576	0.5466	0.4085	0.4847	0.52944	T	ANC	cancer	6346
rs4430796	21499250	Spurdle AB	Endometrial cancer	cancer	"1,265 European ancestry cases, 5,190 European ancestry controls"	EUR	17q12	17	37738049	1.19	A	7.00E-10	G	A	0.3094	0.6052	0.7232	0.5249	0.7035	0.57324	G	DER	cancer	6455
rs4430796	17603485	Gudmundsson J	Prostate cancer	cancer	"1,501 European ancestry cases, 11,290 European ancestry controls"	EUR	17q12	17	37738049	1.22	A	1.00E-11	G	A	0.3094	0.6052	0.7232	0.5249	0.7035	0.57324	G	DER	cancer	12791
rs4444235	19011631	Houlston RS	Colorectal cancer	cancer	"1,902 European ancestry cases, 1,929 European ancestry controls"	EUR	14q22.2	14	53944201	1.11	C	8.00E-10	T	C	0.2935	0.4467	0.4673	0.493	0.5102	0.44214	T	DER	cancer	3831
rs444929	24920014	Cozen W	Hodgkin's lymphoma	cancer	"1,816 European ancestry cases, 7,877 European ancestry controls"	EUR	10p14	10	8068061	1.26	C	3.00E-06	C	T	0.2148	0.1138	0.0407	0.1958	0.0808	0.12918	T	DER	cancer	9693
rs445114	19767754	Gudmundsson J	Prostate cancer	cancer	"Up to 1,968 European ancestry cases, 35,382 European ancestry controls"	EUR	8q24.21	8	127310936	1.14	T	5.00E-10	T	C	0.2799	0.6542	0.5446	0.6392	0.454	0.51438	T	ANC	cancer	37350
rs4488809	21725308	Hu Z	Lung cancer	cancer	"2,331 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls"	EAS	3q28	3	189638472	1.26	C	7.00E-26	T	C	0.2844	0.3588	0.5198	0.494	0.4683	0.42506	T	DER	cancer	5408
rs4510656	24163127	Figueroa JD	Bladder cancer	cancer	"6,911 European ancestry cases, 11,818 European ancestry controls"	EUR	6p22.3	6	20766466	1.1236	C	7.00E-07	C	A	0.6445	0.6484	0.8036	0.5527	0.7577	0.68138	C	ANC	cancer	18729
rs4521323	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	4q34.1	4	173734763	1.28	C	9.00E-06	A	C	0.323	0.6671	0.7679	0.5447	0.5481	0.57016	A	DER	cancer	8966
rs455804	22807686	Li S	Hepatocellular carcinoma	cancer	"1,538 Han Chinese ancestry HBV-positive HCC cases, 1,465 Han Chinese ancestry chronic HBV carriers"	EAS	21q21.3	21	29773850	1.19	C	5.00E-10	A	C	0.584	0.7723	0.6865	0.7644	0.8047	0.72238	C	ANC	cancer	3003
rs4610302	24121790	Levine DM	Esophageal adenocarcinoma	cancer	"1,516 European ancestry cases, 3,209 European ancestry controls"	EUR	4q22.1	4	87478958	1.1765	G	4.00E-06	A	G	0.9024	0.7939	0.63	0.5974	0.7832	0.74138	G	ANC	cancer	4725
rs4624820	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	5q31.3	5	142302223	1.52	A	3.00E-31	G	A	0.6286	0.5778	0.3016	0.5358	0.5082	0.5104	G	DER	cancer	5932
rs4629710	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	6q23.2	6	131242437	1.6	A	6.00E-06	G	A	0.0242	0.147	0.002	0.2008	0.1043	0.09566	G	DER	cancer	8966
rs4635969	20543847	Turnbull C	Testicular germ cell cancer	cancer	"979 European ancestry cases, 4,947 European ancestry controls"	EUR	5p15.33	5	1308437	1.54	A	1.00E-23	G	A	0.3268	0.1124	0.1448	0.1879	0.0879	0.17196	G	DER	cancer	5926
rs4635969	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	5p15.33	5	1308437	1.39	A	5.00E-24	G	A	0.3268	0.1124	0.1448	0.1879	0.0879	0.17196	G	DER	cancer	5932
rs4657482	19483681	Rapley EA	Testicular germ cell tumor	cancer	"730 cases, 1,435 controls"	EUR	1q24.1	1	165862412	1.14	A	2.00E-06	A	G	0.2337	0.4063	0.4425	0.341	0.2137	0.32744	G	DER	cancer	2165
rs4699052	19483681	Rapley EA	Testicular germ cell tumor	cancer	"730 cases, 1,435 controls"	EUR	4q24	4	103216633	1.21	C	2.00E-07	C	T	0.4183	0.6354	0.6329	0.6054	0.5552	0.56944	T	DER	cancer	2165
rs4712653	21124317	Wang K	Neuroblastoma	cancer	"1,627 European ancestry child cases, 3,254 European ancestry child controls"	EUR	6p22.3	6	22125735	1.4	C	8.00E-17	T	C	0.8964	0.6585	0.7312	0.4612	0.6667	0.6828	T	DER	cancer	4881
rs4713266	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	MIX	6p24.2	6	11218797	1.06	C	3.00E-09	C	T	0.8374	0.4251	0.2391	0.5109	0.364	0.4753	C	ANC	cancer	87040
rs4737547	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	8q12.1	8	59633105	1.3	G	3.00E-06	A	G	0.7995	0.3919	0.6369	0.4324	0.6892	0.58998	A	DER	cancer	8966
rs4767364	21437268	McKay JD	Upper aerodigestive tract cancers	cancer	"2,091 European ancestry cases, 8,334 European ancestry controls"	EUR	12q24.13	12	112083644	1.13	A	2.00E-08	G	A	0.8495	0.402	0.8899	0.2604	0.59	0.59836	A	ANC	cancer	10425
rs4782151	24700089	Miura K	Cervical cancer	cancer	"226 Japanese ancestry cases, 186 Japanese ancestry controls"	EAS	16p13.2	16	9232128	1.91	C	5.00E-06	C	T	0.4145	0.5908	0.5794	0.6272	0.6022	0.56282	C	ANC	cancer	412
rs4784227	20585626	Long J	Breast cancer	cancer	"2,073 Chinese ancestry cases, 2,084 Chinese ancestry controls"	EAS	16q12.1	16	52565276	1.24	T	1.00E-28	C	T	0.0416	0.3127	0.255	0.2545	0.2219	0.21714	C	DER	cancer	4157
rs4785204	22960999	Wu C	Esophageal cancer (squamous cell)	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	16q12.1	16	50069823	1.24	T	2.00E-20	C	T	0.1044	0.1009	0.2619	0.0676	0.093	0.12556	C	DER	cancer	4075
rs4785763	19578364	Bishop DT	Melanoma	cancer	"1,539 European ancestry cases, 3,917 European ancestry controls"	EUR	16q24.3	16	90000528	1.36	A	6.00E-22	A	C	0.3124	0.2406	0.2728	0.2992	0.2536	0.27572	A	ANC	cancer	5456
rs4795519	21540461	Kim DH	Chronic myeloid leukemia	cancer	"201 Korean ancestry cases, 497 Korean ancestry controls"	EAS	17q11.1	17	27214252	1.85	C	1.00E-12	A	C	0.6384	0.4481	0.5089	0.328	0.3681	0.4583	C	ANC	cancer	698
rs4808801	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	19p13.11	19	18460331	1.08	A	5.00E-15	A	G	0.2383	0.6427	0.7837	0.6551	0.546	0.57316	A	ANC	cancer	22627
rs4809324	19578366	Wrensch M	Glioma (high-grade)	cancer	"692 European ancestry cases, 3,992 European ancestry controls"	EUR	20q13.33	20	63686867	1.6	C	2.00E-09	T	C	0.0083	0.2248	0.1478	0.0974	0.1176	0.11918	T	DER	cancer	4684
rs4813802	23266556	Peters U	Colorectal cancer	cancer	"12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls"	EUR	20p12.3	20	6718948	1.1	G	7.00E-06	T	G	0.084	0.389	0.2302	0.3181	0.4796	0.30018	T	DER	cancer	27809
rs4849887	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	2q14.2	2	120487546	1.1	C	4.00E-11	T	C	0.6989	0.8689	0.7907	0.8976	0.7536	0.80194	T	DER	cancer	22627
rs4869742	21540461	Kim DH	Chronic myeloid leukemia	cancer	"201 Korean ancestry cases, 497 Korean ancestry controls"	EAS	6q25.1	6	151586613	1.67	T	2.00E-06	C	T	0.7375	0.4582	0.8065	0.2893	0.4785	0.554	C	DER	cancer	698
rs4888262	23666239	Chung CC	Testicular germ cell tumor	cancer	"582 European ancestry male cases, 1,056 European ancestry male controls"	EUR	16q23.1	16	74636560	1.26	C	5.00E-12	C	T	0.1906	0.5778	0.2123	0.505	0.3487	0.36688	C	ANC	cancer	1638
rs4924410	22327514	Postel-Vinay S	Ewing sarcoma	cancer	"Up to 427 European ancestry cases, up to 4,352 European ancestry controls"	EUR	15q15.1	15	40047293	1.46	A	7.00E-09	A	C	0.3374	0.1383	0.0169	0.2634	0.2188	0.19496	C	DER	cancer	4779
rs4924935	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	17p11.2	17	18850557	1.37	C	8.00E-06	C	T	0.1657	0.2147	0.1359	0.2992	0.4387	0.25084	T	DER	cancer	6200
rs4937362	25279986	Skibola CF	Follicular lymphoma	cancer	"2,728 European ancestry cases, 7,758 European ancestry controls"	EUR	11q24.3	11	128622844	1.19	T	7.00E-11	T	C	0.6346	0.5245	0.623	0.4026	0.501	0.53714	C	DER	cancer	10486
rs4938573	25279986	Skibola CF	Follicular lymphoma	cancer	"2,728 European ancestry cases, 7,758 European ancestry controls"	EUR	11q23.3	11	118871133	1.34	C	6.00E-20	C	T	0.2753	0.1614	0.1052	0.1918	0.1656	0.17986	C	ANC	cancer	10486
rs4939827	18372901	Tenesa A	Colorectal cancer	cancer	"981 European ancestry cases, 1,002 European ancestry controls"	EUR	18q21.1	18	48927093	1.2	T	8.00E-28	T	C	0.3048	0.3501	0.3105	0.5318	0.2812	0.35568	T	ANC	cancer	1983
rs4948317	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EUR	10q21.1	10	58811675	1.1	C	7.00E-08	C	T	0.9259	0.2997	0.2827	0.3429	0.4049	0.45122	C	ANC	cancer	8270
rs4951011	25038754	Cai Q	Breast cancer	cancer	"2,867 Chinese ancestry cases, 2,285 Chinese ancestry controls, 2,246 Korean ancestry cases, 2,052 Korean ancestry controls"	EAS	1q32.1	1	203797203	1.09	G	9.00E-09	A	G	0.0477	0.3271	0.3125	0.1451	0.2321	0.2129	A	DER	cancer	9450
rs4958351	20592726	Chen SH	Asparaginase hypersensitivity in acute lymphoblastic leukemia	cancer	"211 European ancestry child cases, 40 Black child cases, 46 Hispanic child cases, 4 Asian ancestry child cases, 21 child cases"	MIX	5q33.2	5	153790814	1.75	A	4.00E-07	G	A	0.2451	0.2104	0.0327	0.3608	0.4376	0.25732	G	DER	cancer	322
rs4962416	18264096	Thomas G	Prostate cancer	cancer	"1,172 European ancestry cases, 1,157 European ancestry controls"	EUR	10q26.13	10	125008303	1.17	C	2.00E-07	T	C	0.1657	0.1888	0.0089	0.2753	0.3016	0.18806	C	ANC	cancer	2329
rs4973768	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	3p24.1	3	27374522	1.1	T	2.00E-30	C	T	0.3169	0.5259	0.1845	0.4811	0.4387	0.38942	T	ANC	cancer	22627
rs4973768	21263130	Fletcher O	Breast cancer	cancer	"2,839 European ancestry cases, 3,507 European ancestry controls"	EUR	3p24.1	3	27374522	1.14	C	2.00E-08	C	T	0.6831	0.4741	0.8155	0.5189	0.5613	0.61058	T	DER	cancer	6346
rs4977756	19578367	Shete S	Glioma	cancer	"1,878 European ancestry cases, 3,670 European ancestry controls"	EUR	9p21.3	9	22068653	1.24	G	7.00E-15	G	A	0.32	0.2075	0.2054	0.3996	0.274	0.2813	A	DER	cancer	5548
rs4982731	23512250	Xu H	Acute lymphoblastic leukemia (childhood)	cancer	"972 European ancestry cases, 1,386 European ancestry controls, 89 African American cases, 1,363 African American controls, 305 Hispanic cases, 1,008 Hispanic controls"	MIX	14q11.2	14	23116124	1.36	C	9.00E-12	C	T	0.4168	0.3818	0.1478	0.2833	0.4029	0.32652	T	DER	cancer	5123
rs4987855	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	18q21.33	18	63126316	1.47	C	3.00E-12	C	T	0.997	0.9481	1	0.8857	0.9775	0.96166	C	ANC	cancer	8400
rs498872	19578367	Shete S	Glioma	cancer	"1,878 European ancestry cases, 3,670 European ancestry controls"	EUR	11q23.3	11	118606652	1.18	A	1.00E-08	A	G	0.0961	0.2363	0.252	0.3072	0.3845	0.25522	G	DER	cancer	5548
rs501764	24149102	Frampton M	Hodgkin's lymphoma	cancer	"1,465 European ancestry cases, 6,417 European ancestry controls"	EUR	10p14	10	8051071	1.39	G	4.00E-10	G	T	0.0635	0.0908	0.0109	0.1769	0.0583	0.08008	T	DER	cancer	7882
rs505922	19648918	Amundadottir L	Pancreatic cancer	cancer	"1,771 European ancestry cases, 1,805 European ancestry controls"	EUR	9q34.2	9	133273813	1.2	C	5.00E-08	T	C	0.3654	0.219	0.381	0.3678	0.3926	0.34516	T	DER	cancer	3576
rs527616	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	18q11.2	18	26757460	1.05	G	2.00E-10	C	G	0.9085	0.7983	0.7421	0.6044	0.7239	0.75544	G	ANC	cancer	22627
rs546784	23007406	Yang JJ	Acute lymphoblastic leukemia (childhood)	cancer	"1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases"	MIX	1p31.3	1	66296783	1.4	T	9.00E-06	T	C	0.8495	0.7133	0.8353	0.4354	0.6401	0.69472	T	ANC	cancer	1268
rs56232506	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	MIX	7p12.3	7	47397647	1.07	A	2.00E-09	G	A	0.0431	0.5476	0.4226	0.4801	0.4489	0.38846	G	DER	cancer	87040
rs563507	19684603	Trevino LR	Acute lymphoblastic leukemia (childhood)	cancer	"317 European ancestry cases, 17,958 European ancestry controls"	EUR	10p11.21	10	34529060	2	A	9.00E-06	G	A	0.2057	0.0519	0.002	0.0457	0.0133	0.06372	G	DER	cancer	18275
rs5742915	21623375	Albagha OM	Paget's disease	cancer	"741 European ancestry cases, 2,699 European ancestry controls"	EUR	15q24.1	15	74044292	1.34	C	2.00E-14	T	C	0.0454	0.2911	0.004	0.4384	0.2618	0.20814	T	DER	cancer	3440
rs59336	23266556	Peters U	Colorectal cancer	cancer	"12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls"	EUR	12q24.21	12	114678547	1.09	T	4.00E-07	T	A	0.4894	0.5865	0.6319	0.4901	0.5123	0.54204	T	ANC	cancer	27809
rs59586681	24403052	Stacey SN	Basal cell carcinoma	cancer	"4,208 European ancestry cases, 109,408 European ancestry controls"	EUR	20p13	20	2239664	1.16	T	3.00E-09	A	T	0.2277	0.2579	0.0883	0.3926	0.3282	0.25894	A	DER	cancer	113616
rs6010620	24908248	Walsh KM	Glioma (high-grade)	cancer	"1,013 European ancestry cases, 6,595 European ancestry controls"	EUR	20q13.33	20	63678486	1.56	G	5.00E-19	A	G	0.972	0.7118	0.2927	0.7942	0.7321	0.70056	G	ANC	cancer	7608
rs6010620	19578367	Shete S	Glioma	cancer	"1,878 European ancestry cases, 3,670 European ancestry controls"	EUR	20q13.33	20	63678486	1.28	G	3.00E-12	A	G	0.972	0.7118	0.2927	0.7942	0.7321	0.70056	G	ANC	cancer	5548
rs6062509	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	20q13.33	20	63731211	1.12	T	4.00E-16	G	T	0.9486	0.6945	0.3651	0.7217	0.7434	0.69466	G	DER	cancer	22548
rs6104690	24163127	Figueroa JD	Bladder cancer	cancer	"6,911 European ancestry cases, 11,818 European ancestry controls"	EUR	20p12.2	20	11007451	1.1236	A	7.00E-07	G	A	0.5779	0.4452	0.6141	0.5646	0.4571	0.53178	G	DER	cancer	18729
rs61271866	25129146	Wu C	Esophageal squamous cell carcinoma	cancer	"5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls"	EAS	9p21.3	9	21997016	1.11	A	7.00E-07	T	A	0.0098	0.1182	0.1667	0.2863	0.2352	0.16324	T	DER	cancer	11124
rs616488	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	1p36.22	1	10506158	1.06	A	2.00E-10	A	G	0.9138	0.5043	0.6825	0.674	0.7577	0.70646	A	ANC	cancer	22627
rs62185668	24861552	Rafnar T	Urinary bladder cancer	cancer	"1,670 European ancestry cases, 90,180 European ancestry controls"	EUR	20p12.2	20	10981287	1.19	A	2.00E-11	C	A	0.0552	0.1124	0.3313	0.2445	0.1933	0.18734	C	DER	cancer	91850
rs633862	25134534	Chen K	Epithelial ovarian cancer	cancer	"1,044 Han Chinese ancestry cases, 1,172 Han Chinese ancestry controls"	EAS	9q34.2	9	133279871	1.19	T	9.00E-07	C	T	0.4198	0.3487	0.4891	0.5676	0.5153	0.4681	C	DER	cancer	2216
rs636291	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	EUR	1p36.22	1	10496040	1.18	A	2.00E-08	G	A	0.1944	0.4928	0.7361	0.6839	0.7147	0.56438	G	DER	cancer	87040
rs6428370	19684603	Trevino LR	Acute lymphoblastic leukemia (childhood)	cancer	"317 European ancestry cases, 17,958 European ancestry controls"	EUR	1q31.3	1	196875463	1.43	G	7.00E-06	A	G	0.646	0.2608	0.1935	0.327	0.3988	0.36522	G	ANC	cancer	18275
rs6435862	19412175	Capasso M	Neuroblastoma (high-risk)	cancer	"397 European ancestry cases, 2,043 European ancestry controls"	EUR	2q35	2	214807822	1.68	G	9.00E-18	G	T	0.2776	0.1556	0.1706	0.2465	0.2689	0.22384	T	DER	cancer	2440
rs6444305	25279986	Skibola CF	Follicular lymphoma	cancer	"2,728 European ancestry cases, 7,758 European ancestry controls"	EUR	3q28	3	188582114	1.21	G	1.00E-10	G	A	0.5	0.2896	0.1389	0.3002	0.3098	0.3077	G	ANC	cancer	10486
rs6457327	19620980	Skibola CF	Follicular lymphoma	cancer	"189 European ancestry cases, 592 European controls"	EUR	6p21.33	6	31106253	1.69	C	5.00E-11	A	C	0.7428	0.634	0.6419	0.6272	0.7342	0.67602	C	ANC	cancer	781
rs6464375	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	7q36.2	7	153928758	3.73	T	4.00E-07	C	T	0.0968	0.0504	0.0387	0.0547	0.0215	0.05242	C	DER	cancer	6200
rs6465657	18264097	Eeles RA	Prostate cancer	cancer	"1,854 European ancestry cases, 1,894 European ancestry controls"	EUR	7q21.3	7	98187015	1.12	C	1.00E-09	C	T	0.9644	0.6844	0.8502	0.4901	0.8098	0.75978	C	ANC	cancer	3748
rs6469656	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	8q23.3	8	116635549	1.09	A	5.00E-08	G	A	0.8298	0.7896	0.6726	0.8897	0.8538	0.8071	G	DER	cancer	8270
rs647161	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	5q31.1	5	135163402	1.15	A	2.00E-14	C	A	0.5166	0.6254	0.3016	0.66	0.6299	0.5467	C	DER	cancer	8270
rs6472903	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	"8q21.11, 8q21.13"	8	75318066	1.1	T	2.00E-17	G	T	0.8918	0.9193	0.9683	0.836	0.9008	0.90324	T	ANC	cancer	22627
rs6503659	22960999	Wu C	Esophageal cancer (squamous cell)	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	17q21.2	17	41741012	1.27	A	3.00E-16	A	T	0.0446	0.1686	0.0962	0.1759	0.0695	0.11096	T	DER	cancer	4075
rs6504950	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	17q22	17	54979110	1.06	G	2.00E-13	G	A	0.6415	0.8228	0.8988	0.7306	0.8119	0.78112	G	ANC	cancer	22627
rs6558578	24700089	Miura K	Cervical cancer	cancer	"226 Japanese ancestry cases, 186 Japanese ancestry controls"	EAS	8p23.3	8	2021565	2.31	G	7.00E-06	T	G	0.5484	0.6844	0.8433	0.67	0.7515	0.69952	T	DER	cancer	412
rs6599175	23502783	Weinhold N	Multiple myeloma (hyperdiploidy)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	3p22.1	3	41744517	1.48	C	1.00E-09	T	C	0.7133	0.17	0.1478	0.1879	0.18	0.2798	C	ANC	cancer	8966
rs6601327	23502783	Weinhold N	Multiple myeloma (hyperdiploidy)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	8p23.1	8	9538022	1.27	G	8.00E-06	G	A	0.4826	0.4885	0.6528	0.3509	0.4305	0.48106	G	ANC	cancer	8966
rs6683977	23007406	Yang JJ	Acute lymphoblastic leukemia (childhood)	cancer	"1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases"	MIX	1p31.3	1	66303417	1.41	C	5.00E-06	G	C	0.0439	0.2824	0.1637	0.5636	0.3497	0.28066	G	DER	cancer	1268
rs6687758	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	1q41	1	221991606	1.12	G	9.00E-09	A	G	0.1793	0.2334	0.2044	0.2217	0.1288	0.19352	A	DER	cancer	8270
rs6711606	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	2q11.2	2	101305708	2.81	T	4.00E-06	T	G	0.0061	0.1023	0.127	0.169	0.3415	0.14918	G	DER	cancer	6200
rs6726538	24700089	Miura K	Cervical cancer	cancer	"226 Japanese ancestry cases, 186 Japanese ancestry controls"	EAS	2q14.2	2	118131653	1.946	A	3.00E-06	T	A	0.8207	0.6182	0.498	0.7097	0.5879	0.6469	A	ANC	cancer	412
rs6736997	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	2q37.2	2	234706553	1.57	A	6.00E-06	A	C	0.236	0.379	0.255	0.3847	0.5	0.35094	C	DER	cancer	6200
rs6746082	22120009	Broderick P	Multiple myeloma	cancer	"1,675 European ancestry cases, 5,903 European ancestry controls"	EUR	2p23.3	2	25436375	1.29	A	4.00E-07	A	C	0.4871	0.7161	0.3958	0.7873	0.7669	0.63064	A	ANC	cancer	7578
rs6759952	23894154	Kohler A	Thyroid cancer	cancer	"690 European ancestry cases, 497 European ancestry controls"	EUR	2q35	2	217406996	1.25	T	6.00E-10	T	C	0.6505	0.6009	0.7718	0.4384	0.8528	0.66288	T	ANC	cancer	1187
rs6762644	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	3p26.1	3	4700592	1.07	G	2.00E-12	A	G	0.4841	0.2507	0.0655	0.3539	0.0808	0.247	A	DER	cancer	22627
rs6763931	21743467	Kote-Jarai Z	Prostate cancer	cancer	"6,621 European ancestry cases, 6,939 European ancestry controls"	EUR	3q23	3	141383991	1.04	A	2.00E-08	G	A	0.8949	0.428	0.3304	0.4254	0.2853	0.4728	A	ANC	cancer	13560
rs6772209	21642993	Wu C	Esophageal cancer	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	3q26.31	3	175929377	1.49	G	3.00E-07	G	A	0.8321	0.9899	0.9692	0.999	0.9959	0.95722	G	ANC	cancer	4075
rs6788895	22951594	Elgazzar S	Breast cancer	cancer	"1,086 Japanese ancestry cases, 1,816 Japanese ancestry controls"	EAS	3q25.1	3	150750021	1.22	G	9.00E-08	G	T	0.4622	0.8429	0.6042	0.9702	0.8067	0.73724	T	DER	cancer	2902
rs6800901	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	3q13.33	3	121435346	1.31	T	2.00E-06	C	T	0.1142	0.2118	0.1548	0.3221	0.2086	0.2023	C	DER	cancer	8966
rs6828523	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	4q34.1	4	174925275	1.11	C	4.00E-16	C	A	0.5832	0.8199	0.7619	0.8917	0.7843	0.7682	C	ANC	cancer	22627
rs684232	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	17p13.3	17	715725	1.1	C	5.00E-15	T	C	0.7005	0.4395	0.6181	0.3628	0.3773	0.49964	T	DER	cancer	22548
rs6869841	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	5q35.2	5	173512423	1.07	T	5.00E-08	C	T	0.3964	0.183	0.1716	0.1988	0.2924	0.24844	C	DER	cancer	22548
rs6879627	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	5p15.33	5	2109787	1.25	C	8.00E-06	T	C	0.9569	0.781	0.5942	0.8579	0.9294	0.82388	C	ANC	cancer	6200
rs6903608	21037568	Enciso-Mora V	Hodgkin's lymphoma	cancer	"589 European ancestry cases, 5,199 European ancestry controls"	EUR	"6p21.32, 6p21.32[rs204999]; 6p21.32[rs9268528]"	6	32460508	1.7	C	3.00E-50	C	T	0.3805	0.2291	0.3889	0.3022	0.3742	0.33498	T	DER	cancer	5788
rs6939340	18463370	Maris JM	Neuroblastoma	cancer	"1,032 European ancestry cases, 2,043 European ancestry controls"	EUR	6p22.3	6	22139775	1.37	G	9.00E-15	A	G	0.9017	0.6556	0.6806	0.4811	0.6636	0.67652	G	ANC	cancer	3075
rs6964969	23512250	Xu H	Acute lymphoblastic leukemia (childhood)	cancer	"972 European ancestry cases, 1,386 European ancestry controls, 89 African American cases, 1,363 African American controls, 305 Hispanic cases, 1,008 Hispanic controls"	MIX	7p12.2	7	50405553	1.67	G	2.00E-29	A	G	0.174	0.2334	0.1081	0.3181	0.2914	0.225	A	DER	cancer	5123
rs6971499	25086665	Wolpin BM	Pancreatic cancer	cancer	"1,582 European ancestry cases, 5,203 European ancestry controls"	EUR	7q32.3	7	130995762	1.27	T	3.00E-12	T	C	0.8578	0.8977	0.9722	0.8748	0.8078	0.88206	T	ANC	cancer	6785
rs6976769	25134534	Chen K	Epithelial ovarian cancer	cancer	"1,044 Han Chinese ancestry cases, 1,172 Han Chinese ancestry controls"	EAS	7q21.11	7	83667946	1.458	C	4.00E-06	A	C	0.0333	0.0159	0.0635	0.007	0.002	0.02434	A	DER	cancer	2216
rs6983267	17618284	Tomlinson I	Colorectal cancer	cancer	"930 European ancestry cases, 960 European ancestry controls"	EUR	8q24.21	8	127401060	1.27	G	1.00E-14	G	T	0.9523	0.5504	0.3879	0.499	0.5317	0.58426	G	ANC	cancer	1890
rs6983267	17401363	Yeager M	Prostate cancer	cancer	"1,172 European ancestry cases, 1,157 European ancestry controls"	EUR	8q24.21	8	127401060	1.26	G	9.00E-13	G	T	0.9523	0.5504	0.3879	0.499	0.5317	0.58426	G	ANC	cancer	2329
rs6983561	22923026	Cheng I	Prostate cancer	cancer	"1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls"	MIX	8q24.21	8	127094635	1.87	C	4.00E-13	A	C	0.5265	0.0591	0.2143	0.0358	0.1012	0.18738	C	ANC	cancer	4175
rs7010162	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	8q13.3	8	70064270	1.22	C	5.00E-08	C	T	0.3026	0.3285	0.0585	0.5954	0.3814	0.33328	C	ANC	cancer	5932
rs7014346	18372901	Tenesa A	Colorectal cancer	cancer	"981 European ancestry cases, 1,002 European ancestry controls"	EUR	8q24.21	8	127412547	1.19	A	9.00E-26	A	G	0.4009	0.2925	0.2857	0.335	0.3384	0.3305	A	ANC	cancer	1983
rs7023329	19578364	Bishop DT	Melanoma	cancer	"1,539 European ancestry cases, 3,917 European ancestry controls"	EUR	9p21.3	9	21816529	1.18	A	4.00E-07	A	G	0.4856	0.5014	0.5268	0.5199	0.727	0.55214	A	ANC	cancer	5456
rs704010	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	10q22.3	10	79081391	1.08	T	7.00E-22	T	C	0.0303	0.3876	0.3085	0.4125	0.3108	0.28994	C	DER	cancer	22627
rs704017	24836286	Zhang B	Colorectal cancer	cancer	"2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls"	EAS	10q22.3	10	79059375	1.1	G	2.00E-08	A	G	0.5582	0.3847	0.2788	0.5616	0.4172	0.4401	G	ANC	cancer	8270
rs7072776	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	10p12.31	10	21744013	1.07	A	4.00E-14	A	G	0.5628	0.3458	0.0546	0.2863	0.2076	0.29142	A	ANC	cancer	22627
rs708224	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	12p11.21	12	32283475	1.32	A	3.00E-07	A	G	0.6589	0.5288	0.5556	0.4245	0.4448	0.52252	A	ANC	cancer	6200
rs7086803	23143601	Lan Q	Lung cancer	cancer	"5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls"	EAS	10q25.2	10	112738717	1.28	A	4.00E-18	G	A	0.6354	0.1571	0.2937	0.0278	0.0501	0.23282	A	ANC	cancer	10054
rs7086888	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	10p15.1	10	4634004	1.87	G	8.00E-06	A	G	0.32	0.0519	0.0149	0.0666	0.1401	0.1187	G	ANC	cancer	8966
rs7089424	19684604	Papaemmanuil E	Acute lymphoblastic leukemia (childhood)	cancer	"907 European ancestry cases, 2,398 European ancestry controls"	EUR	10q21.2	10	61992400	1.65	G	7.00E-19	T	G	0.2443	0.4813	0.3591	0.329	0.5092	0.38458	T	DER	cancer	3305
rs710521	24163127	Figueroa JD	Bladder cancer	cancer	"up to 2,305 European ancestry cases, up to 3,901 European ancestry controls"	EUR	3q28	3	189928144	1.14	T	2.00E-11	T	C	0.8147	0.781	0.7976	0.7197	0.8599	0.79458	T	ANC	cancer	6206
rs710521	20348956	Kiemeney LA	Urinary bladder cancer	cancer	"1,889 European ancestry cases, 39,310 European ancestry controls"	EUR	3q28	3	189928144	1.19	T	6.00E-08	T	C	0.8147	0.781	0.7976	0.7197	0.8599	0.79458	T	ANC	cancer	41199
rs7107217	22383897	Long J	Breast cancer	cancer	"2,918 Chinese ancestry cases, 2,324 Chinese ancestry controls"	EAS	11q24.3	11	129603795	1.08	C	5.00E-07	A	C	0.5295	0.4813	0.3492	0.5258	0.6656	0.51028	A	DER	cancer	5242
rs7126629	24740154	Lange EM	Prostate cancer (early onset)	cancer	"931 European ancestry cases, 4,120 European ancestry controls"	EUR	11p15.5	11	2207722	1.44	C	2.00E-08	C	A	0.4788	0.3545	0.1042	0.1819	0.2434	0.27256	C	ANC	cancer	5051
rs7141529	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	14q24.1	14	68660027	1.09	C	3.00E-10	T	C	0.4803	0.5187	0.8065	0.502	0.5798	0.57746	T	DER	cancer	22548
rs7142143	23007406	Yang JJ	Acute lymphoblastic leukemia (childhood)	cancer	"1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases"	MIX	14q22.1	14	50936813	3.61	C	7.00E-09	T	C	0.112	0.0014	0	0.002	0	0.02308	T	DER	cancer	1268
rs7144018	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	14q22.3	14	57140349	1.85	C	9.00E-06	T	C	0.8359	0.1254	0.0685	0.1103	0.0838	0.24478	C	ANC	cancer	8966
rs7153648	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	MIX	14q23.1	14	60655808	1.11	C	2.00E-09	C	G	0.3926	0.1196	0.1835	0.0835	0.316	0.21904	C	ANC	cancer	87040
rs7156960	22076464	Ellinghaus E	Acute lymphoblastic leukemia (childhood)	cancer	"419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls"	EUR	14q24.3	14	76237008	1.2048193	C	1.00E-06	C	G	0.6558	0.5591	0.4861	0.5567	0.5307	0.55768	G	DER	cancer	900
rs7176508	24292274	Speedy HE	Chronic lymphocytic leukemia	cancer	"1,739 European ancestry cases, 5,199 European ancestry controls"	EUR	15q23	15	69726651	1.42	A	8.00E-18	A	G	0.2496	0.3329	0.2133	0.3837	0.4151	0.31892	G	DER	cancer	6938
rs7190458	25086665	Wolpin BM	Pancreatic cancer	cancer	"1,582 European ancestry cases, 5,203 European ancestry controls"	EUR	16q23.1	16	75229763	1.46	A	1.00E-10	G	A	0.2852	0.0648	0.0327	0.0467	0.0072	0.08732	G	DER	cancer	6785
rs720475	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	7q35	7	144377836	1.06	G	7.00E-11	G	A	0.9017	0.8357	0.9613	0.7117	0.8292	0.84792	G	ANC	cancer	22627
rs721048	18264098	Gudmundsson J	Prostate cancer	cancer	"1,854 European ancestry cases, 21,372 European ancestry controls"	EUR	2p15	2	62904596	1.15	A	8.00E-09	G	A	0.0113	0.1859	0.0546	0.173	0.1022	0.1054	G	DER	cancer	23226
rs7216064	22797724	Shiraishi K	Lung adenocarcinoma	cancer	"1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls"	EUR	17q24.2	17	67902693	1.2	A	7.00E-11	G	A	0.1815	0.268	0.6915	0.2137	0.2689	0.32472	G	DER	cancer	7028
rs7216064	23143601	Lan Q	Lung cancer	cancer	"5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls"	EAS	17q24.2	17	67902693	1.16	A	7.00E-06	G	A	0.1815	0.268	0.6915	0.2137	0.2689	0.32472	G	DER	cancer	10054
rs7229639	24448986	Zhang B	Colorectal cancer	cancer	"1,773 East Asian ancestry cases, 2,642 East Asian ancestry controls"	EAS	18q21.1	18	48924606	1.22	A	3.00E-11	A	G	0.2103	0.1138	0.1319	0.0994	0.0378	0.11864	G	DER	cancer	4415
rs7241993	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	18q23	18	79013973	1.09	C	2.00E-09	C	T	0.4402	0.6902	0.6448	0.6938	0.6493	0.62366	T	DER	cancer	22548
rs7335046	21700618	Nan H	Basal cell carcinoma	cancer	"2,045 European ancestry cases, 6,013 European ancestry controls"	EUR	13q32.3	13	99389484	1.26	G	3.00E-08	G	C	0.3449	0.2853	0.3254	0.1282	0.2423	0.26522	G	ANC	cancer	8058
rs73376930	24737748	Whiffin N	Colorectal cancer	cancer	"5,626 European ancestry cases, 7,817 European ancestry controls"	EUR	15q13.3	15	32720301	1.246	G	1.00E-11	A	G	0.3411	0.1614	0.5129	0.2068	0.318	0.30804	A	DER	cancer	13443
rs735665	20639881	Conde L	Follicular lymphoma	cancer	"681 European ancestry cases, 750 European ancestry controls"	EUR	11q24.1	11	123490689	1.81	A	4.00E-09	G	A	0.0204	0.2176	0.0149	0.166	0.1411	0.112	G	DER	cancer	1431
rs735665	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	11q24.1	11	123490689	1.62	A	4.00E-39	G	A	0.0204	0.2176	0.0149	0.166	0.1411	0.112	G	DER	cancer	8400
rs7412746	21983785	Macgregor S	Melanoma	cancer	"2,168 European ancestry cases, 4,387 European ancestry controls"	EUR	1q21.3	1	150887995	1.15	T	9.00E-11	C	T	0.0938	0.3761	0.3661	0.5229	0.2945	0.33068	C	DER	cancer	6555
rs7447927	25129146	Wu C	Esophageal squamous cell carcinoma	cancer	"5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls"	EAS	5q31.2	5	139481561	1.18	C	8.00E-20	C	G	0.9213	0.4942	0.625	0.3141	0.363	0.54352	C	ANC	cancer	11124
rs7501939	18264097	Eeles RA	Prostate cancer	cancer	"1,854 European ancestry cases, 1,894 European ancestry controls"	EUR	17q12	17	37741165	1.41	C	9.00E-12	T	C	0.4433	0.696	0.7698	0.6064	0.7372	0.65054	C	ANC	cancer	3748
rs7504990	22318345	Cha PC	Gallbladder cancer	cancer	"41 Japanese ancestry cases, 866 Japanese ancestry controls"	EAS	18q21.2	18	52991406	2.372	T	8.64E-06	T	C	0.2481	0.3905	0.2401	0.2823	0.2658	0.28536	C	DER	cancer	907
rs7536700	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	1q21.3	1	153668351	1.53	T	4.00E-06	C	T	0.354	0.0908	0.0139	0.0755	0.1493	0.1367	C	DER	cancer	8966
rs7538876	18849993	Stacey SN	Basal cell carcinoma	cancer	"930 European ancestry cases, 33,117 European ancestry controls"	EUR	1p36.13	1	17395867	1.28	A	4.00E-12	G	A	0.3434	0.3674	0.1716	0.3728	0.3661	0.32426	A	ANC	cancer	34047
rs753955	21725308	Hu Z	Lung cancer	cancer	"2,331 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls"	EAS	13q12.12	13	23719720	1.18	G	2.00E-12	A	G	0.1392	0.572	0.3373	0.6272	0.6871	0.47256	A	DER	cancer	5408
rs755383	20543847	Turnbull C	Testicular germ cell cancer	cancer	"979 European ancestry cases, 4,947 European ancestry controls"	EUR	9p24.3	9	863635	1.37	T	1.00E-23	C	T	0.3533	0.5548	0.6468	0.6203	0.593	0.55364	C	DER	cancer	5926
rs755383	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	9p24.3	9	863635	1.38	T	2.00E-26	C	T	0.3533	0.5548	0.6468	0.6203	0.593	0.55364	C	DER	cancer	5932
rs7554607	19684603	Trevino LR	Acute lymphoblastic leukemia (childhood)	cancer	"317 European ancestry cases, 17,958 European ancestry controls"	EUR	1q43	1	237103303	1.49	A	2.00E-06	A	G	0.6831	0.5403	0.7391	0.5398	0.6268	0.62582	G	DER	cancer	18275
rs7574865	23242368	Jiang DK	Hepatocellular carcinoma (hepatitis B virus related)	cancer	"1,161 Chinese ancestry cases, 1,353 Chinese ancestry controls"	EAS	"2q32.2, 2q32.3"	2	191099907	1.21	G	2.00E-10	T	G	0.8835	0.6383	0.6528	0.7704	0.7004	0.72908	T	DER	cancer	2514
rs7577599	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	2p23.3	2	25390277	1.43	T	6.00E-06	T	C	0.6006	0.7161	0.4534	0.7962	0.8047	0.6742	T	ANC	cancer	8966
rs7578361	23007406	Yang JJ	Acute lymphoblastic leukemia (childhood)	cancer	"1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases"	MIX	2q23.2	2	149540704	1.4	G	8.00E-06	G	T	0.7368	0.3228	0.1419	0.2416	0.2454	0.3377	G	ANC	cancer	1268
rs757978	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	2q37.3	2	241431686	1.29	T	1.00E-07	C	T	0.1082	0.0807	0.0238	0.0974	0.0838	0.07878	C	DER	cancer	8400
rs7584330	21743467	Kote-Jarai Z	Prostate cancer	cancer	"6,621 European ancestry cases, 6,939 European ancestry controls"	EUR	2q37.3	2	237478585	1.06	G	3.00E-09	A	G	0.7421	0.3372	0.254	0.2147	0.3569	0.38098	G	ANC	cancer	13560
rs7587476	22941191	Diskin SJ	Neuroblastoma	cancer	"2,101 European ancestry cases, 4,202 European ancestry controls"	EUR	2q35	2	214789163	1.372	T	4.00E-14	T	C	0.3669	0.2421	0.2292	0.2008	0.3272	0.27324	C	DER	cancer	6303
rs7611694	23535732	Eeles RA	Prostate cancer	cancer	"11,085 European ancestry cases, 11,463 European ancestry controls"	EUR	3q13.2	3	113556777	1.1	A	4.00E-13	A	C	0.6755	0.6599	0.251	0.5765	0.5399	0.54056	A	ANC	cancer	22548
rs76934034	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	EUR	10q11.22	10	45587537	1.14	T	5.00E-09	T	C	0.9977	0.9251	0.997	0.9324	0.9601	0.96246	T	ANC	cancer	87040
rs7716600	20872241	Li J	Breast cancer	cancer	"2,702 European ancestry female cases, 5,726 European ancestry controls"	EUR	5p12	5	44874903	1.24	A	7.00E-07	A	C	0.1702	0.2983	0.4821	0.2038	0.2607	0.28302	C	DER	cancer	8428
rs7732320	22472174	Xiao Y	Glioblastoma	cancer	315 European ancestry cases	EUR	5q14.1	5	81423306	1.64	T	1.00E-06	C	T	0.5008	0.1542	0.0665	0.1133	0.1012	0.1872	T	ANC	cancer	315
rs7738636	22076464	Ellinghaus E	Acute lymphoblastic leukemia (childhood)	cancer	"419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls"	EUR	6q14.1	6	77080091	1.2658228	A	6.00E-06	A	C	0.5915	0.7781	0.6984	0.7803	0.8057	0.7308	A	ANC	cancer	900
rs7745098	24149102	Frampton M	Hodgkin's lymphoma	cancer	"1,465 European ancestry cases, 6,417 European ancestry controls"	EUR	6q23.3	6	135093866	1.21	C	3.00E-09	C	T	0.1278	0.4452	0.3244	0.4781	0.4223	0.35956	T	DER	cancer	7882
rs7780883	24700089	Miura K	Cervical cancer	cancer	"226 Japanese ancestry cases, 186 Japanese ancestry controls"	EAS	7q11.23	7	77433395	3.28	A	2.00E-06	G	A	0.5378	0.2334	0.1101	0.3161	0.3262	0.30472	G	DER	cancer	412
rs780179	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	5p14.3	5	22812155	1.59	C	9.00E-07	T	C	0.6188	0.4741	0.3571	0.5179	0.5041	0.4944	C	ANC	cancer	8966
rs7822239	25129146	Wu C	Esophageal squamous cell carcinoma	cancer	"5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls"	EAS	8q24.22	8	132107714	1.1	A	8.00E-06	C	A	0.115	0.0908	0.2937	0.0487	0.0603	0.1217	C	DER	cancer	11124
rs7832232	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	8p11.22	8	38611785	1.45	A	5.00E-06	A	G	0.6815	0.5965	0.5159	0.505	0.7454	0.60886	G	DER	cancer	6200
rs7853844	23180869	Wu C	Pancreatic cancer	cancer	642 European ancestry cases	EUR	9q33.1	9	115288135	1.43	A	2.00E-06	G	A	0.2988	0.1974	0.0248	0.1581	0.1227	0.16036	G	DER	cancer	642
rs790356	22544364	Turnbull C	Wilms tumor	cancer	"757 European ancestry cases, 1,879 European ancestry controls"	EUR	11q14.1	11	83909744	1.28	G	4.00E-15	A	G	0.4531	0.5879	0.8433	0.5089	0.5613	0.5909	A	DER	cancer	2636
rs7904519	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	10q25.2	10	113014168	1.06	G	3.00E-08	A	G	0.8601	0.3501	0.0347	0.495	0.3804	0.42406	G	ANC	cancer	22627
rs7931342	18264097	Eeles RA	Prostate cancer	cancer	"1,854 European ancestry cases, 1,894 European ancestry controls"	EUR	11q13.3	11	69227030	1.19	G	2.00E-12	T	G	0.8411	0.3804	0.2331	0.5139	0.4479	0.48328	G	ANC	cancer	3748
rs7944004	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	11p15.5	11	2289922	1.2	T	2.00E-10	T	G	0.5507	0.5879	0.8194	0.498	0.5072	0.59264	T	ANC	cancer	8400
rs798766	24163127	Figueroa JD	Bladder cancer	cancer	"up to 2,305 European ancestry cases, up to 3,901 European ancestry controls"	EUR	4p16.3	4	1732512	1.22	T	7.00E-25	T	C	0.3132	0.2882	0.1468	0.2147	0.2157	0.23572	T	ANC	cancer	6206
rs798766	20348956	Kiemeney LA	Urinary bladder cancer	cancer	"1,889 European ancestry cases, 39,310 European ancestry controls"	EUR	4p16.3	4	1732512	1.24	T	1.00E-11	T	C	0.3132	0.2882	0.1468	0.2147	0.2157	0.23572	T	ANC	cancer	41199
rs801114	18849993	Stacey SN	Basal cell carcinoma	cancer	"930 European ancestry cases, 33,117 European ancestry controls"	EUR	1q42.13	1	228862088	1.28	G	6.00E-12	T	G	0.8366	0.4236	0.3998	0.3797	0.2832	0.46458	G	ANC	cancer	34047
rs80130819	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	EUR	12q13.11	12	48025835	1.14	A	2.00E-09	A	C	0.9947	0.9366	0.996	0.9195	0.9438	0.95812	A	ANC	cancer	87040
rs8014671	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	MIX	14q24.2	14	70625539	1.07	G	1.00E-08	G	A	0.4327	0.5259	0.3542	0.5746	0.4509	0.46766	A	DER	cancer	87040
rs8023845	24292274	Speedy HE	Chronic lymphocytic leukemia	cancer	"1,739 European ancestry cases, 5,199 European ancestry controls"	EUR	15q15.1	15	40121915	1.27	G	2.00E-06	G	T	0.8525	0.8919	0.997	0.8201	0.9438	0.90106	G	ANC	cancer	6938
rs8028689	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	15q13.1	15	28243742	1.65	C	7.00E-06	T	C	0.3805	0.121	0.3909	0.0905	0.2311	0.2428	C	ANC	cancer	8966
rs8030672	21642993	Wu C	Esophageal cancer	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	15q23	15	68766745	1.56	A	1.00E-11	T	A	0.2042	0.0101	0.0308	0.001	0.002	0.04962	A	ANC	cancer	4075
rs8034191	18385738	Hung RJ	Lung cancer	cancer	"1,926 European ance other ancestry cases, 2,522 European and other ancestry controls"	EUR	15q25.1	15	78513681	1.3	C	5.00E-20	T	C	0.1528	0.2147	0.0288	0.3748	0.1933	0.19288	T	DER	cancer	4448
rs8046148	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	16q12.1	16	50109033	1.32	G	4.00E-09	A	G	0.7035	0.7839	0.7063	0.7883	0.8415	0.7647	A	DER	cancer	5932
rs8056064	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	16q23.3	16	82753448	1.68	G	2.00E-06	A	G	0.1354	0.1671	0.4296	0.1819	0.2219	0.22718	A	DER	cancer	8966
rs8067378	23817570	Shi Y	Cervical cancer	cancer	"Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls"	EAS	"17q12, 17q21.1"	17	39895095	1.19	G	9.00E-10	A	G	0.5582	0.4107	0.2827	0.5149	0.3425	0.4218	G	ANC	cancer	4392
rs807624	22544364	Turnbull C	Wilms tumor	cancer	"757 European ancestry cases, 1,879 European ancestry controls"	EUR	2p24.3	2	15642347	1.33	T	1.00E-14	G	T	0.7814	0.4121	0.7798	0.3141	0.5532	0.56812	T	ANC	cancer	2636
rs8088832	24700089	Miura K	Cervical cancer	cancer	"226 Japanese ancestry cases, 186 Japanese ancestry controls"	EAS	18q22.3	18	72259522	1.94	C	4.00E-06	T	C	0.3011	0.5403	0.5556	0.503	0.6656	0.51312	T	DER	cancer	412
rs8099213	23502783	Weinhold N	Multiple myeloma (IgH translocation)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	18q22.1	18	67284976	1.52	T	5.00E-06	C	T	0.4637	0.3242	0.8155	0.3767	0.5859	0.5132	C	DER	cancer	8966
rs8102137	24163127	Figueroa JD	Bladder cancer	cancer	"up to 2,305 European ancestry cases, up to 3,901 European ancestry controls"	EUR	19q12	19	29805946	1.13	C	1.00E-11	T	C	0.0477	0.1729	0.1062	0.2893	0.2117	0.16556	T	DER	cancer	6206
rs8170	23544013	Couch FJ	Breast Cancer in BRCA1 mutation carriers	cancer	"1,426 European ancestry cases, 1,301 European ancestry controls"	EUR	19p13.11	19	17278895	1.19	G	4.00E-13	G	A	0.8139	0.9049	0.999	0.837	0.9121	0.89338	G	ANC	cancer	2727
rs8170	23535733	Garcia-Closas M	Breast cancer	cancer	"4,193 European ancestry cases, 35,194 European ancestry controls"	EUR	19p13.11	19	17278895	1.15	A	9.00E-13	G	A	0.1861	0.0951	0.001	0.163	0.0879	0.10662	G	DER	cancer	39387
rs817826	23023329	Xu J	Prostate cancer	cancer	"1,417 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls"	EAS	9q31.2	9	107394019	1.41	C	5.00E-14	C	T	0.3502	0.1124	0.12	0.1441	0.2117	0.18768	C	ANC	cancer	2425
rs865686	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	9q31.2	9	108126198	1.12	T	1.00E-34	G	T	0.4932	0.683	0.9196	0.6302	0.8783	0.72086	T	ANC	cancer	22627
rs872071	18758461	Di Bernardo MC	Chronic lymphocytic leukemia	cancer	"505 European ancestry cases, 1,438 European ancestry controls"	EUR	6p25.3	6	411064	1.54	G	2.00E-20	A	G	0.031	0.4409	0.3105	0.4742	0.4315	0.33762	A	DER	cancer	1943
rs889312	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	5q11.2	5	56736057	1.12	C	3.00E-36	C	A	0.3374	0.4107	0.5347	0.2833	0.3916	0.39154	A	DER	cancer	22627
rs891835	19578367	Shete S	Glioma	cancer	"1,878 European ancestry cases, 3,670 European ancestry controls"	EUR	8q24.21	8	129479506	1.24	G	8.00E-11	T	G	0.0144	0.2147	0.1389	0.2356	0.1227	0.14526	T	DER	cancer	5548
rs898518	23770605	Berndt SI	Chronic lymphocytic leukemia	cancer	"2,179 European ancestry cases, 6,221 European ancestry controls"	EUR	4q25	4	108095668	1.2	A	4.00E-10	C	A	0.5991	0.4856	0.3462	0.5905	0.5378	0.51184	A	ANC	cancer	8400
rs902774	21743057	Schumacher FR	Prostate cancer	cancer	"2,782 European ancestry cases, 4,458 European ancestry controls"	EUR	12q13.13	12	52880120	1.17	A	5.00E-09	G	A	0.0681	0.1369	0.0119	0.1511	0.0736	0.08832	G	DER	cancer	7240
rs907611	24163127	Figueroa JD	Bladder cancer	cancer	"6,911 European ancestry cases, 11,818 European ancestry controls"	EUR	11p15.5	11	1852842	1.15	A	4.00E-08	G	A	0.0877	0.353	0.2381	0.327	0.2382	0.2488	G	DER	cancer	18729
rs909116	20453838	Turnbull C	Breast cancer	cancer	"3,659 European ancestry cases, 4,897 European ancestry controls"	EUR	11p15.5	11	1920716	1.17	T	7.00E-07	T	C	0.7405	0.3905	0.3611	0.5417	0.6472	0.5362	T	ANC	cancer	8556
rs910873	18488026	Brown KM	Melanoma	cancer	"864 European ancestry cases, 864 European ancestry controls"	EUR	20q11.22	20	34583968	1.75	A	1.00E-15	G	A	0.003	0.0144	0	0.0477	0.0092	0.01486	G	DER	cancer	1728
rs920590	22076464	Ellinghaus E	Acute lymphoblastic leukemia (childhood)	cancer	"419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls"	EUR	8p21.3	8	19793650	1.19	C	2.00E-06	T	C	0.4887	0.415	0.4544	0.3181	0.4888	0.433	C	ANC	cancer	900
rs9272105	22807686	Li S	Hepatocellular carcinoma	cancer	"1,538 Han Chinese ancestry HBV-positive HCC cases, 1,465 Han Chinese ancestry chronic HBV carriers"	EAS	6p21.32	6	32632222	1.28	A	5.00E-22	G	A	0.5832	0.5331	0.4653	0.5527	0.4254	0.51194	A	ANC	cancer	3003
rs9275319	23242368	Jiang DK	Hepatocellular carcinoma (hepatitis B virus related)	cancer	"1,161 Chinese ancestry cases, 1,353 Chinese ancestry controls"	EAS	6p21.32	6	32698518	1.49	A	3.00E-17	A	G	0.8865	0.7104	0.8651	0.837	0.909	0.8416	A	ANC	cancer	2514
rs9275572	21499248	Kumar V	Hepatocellular carcinoma	cancer	"721 Japanese ancestry cases, 2,890 Japanese ancestry controls"	EAS	6p21.32	6	32711222	1.3	A	6.00E-09	A	G	0.3986	0.3141	0.254	0.3996	0.2812	0.3295	G	DER	cancer	3611
rs9287719	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	MIX	2p25.1	2	10570604	1.07	C	2.00E-08	C	T	0.2269	0.4366	0.376	0.4831	0.6012	0.42476	T	DER	cancer	87040
rs9290663	19684603	Trevino LR	Acute lymphoblastic leukemia (childhood)	cancer	"317 European ancestry cases, 17,958 European ancestry controls"	EUR	3q26.32	3	178712151	1.58	T	6.00E-06	A	T	0.3699	0.121	0.248	0.175	0.2382	0.23042	A	DER	cancer	18275
rs9295536	22941191	Diskin SJ	Neuroblastoma	cancer	"2,101 European ancestry cases, 4,202 European ancestry controls"	EUR	6p22.3	6	22131700	1.357	A	8.00E-16	C	A	0.8964	0.647	0.7262	0.4334	0.6033	0.66126	A	ANC	cancer	6303
rs9303196	20876614	Yoon KA	Non-small cell lung cancer	cancer	"621 Korean ancestry cases, 1,541 Korean ancestry controls"	EAS	17p13.2	17	6004123	1.43	T	8.00E-06	A	T	0.6611	0.8963	0.9127	0.8449	0.8313	0.82926	T	ANC	cancer	2162
rs9364554	18264097	Eeles RA	Prostate cancer	cancer	"1,854 European ancestry cases, 1,894 European ancestry controls"	EUR	6q25.3	6	160412632	1.17	T	6.00E-10	C	T	0.0219	0.1888	0.3294	0.2783	0.2863	0.22094	C	DER	cancer	3748
rs9378805	21131588	Slager SL	Chronic lymphocytic leukemia	cancer	"407 European ancestry cases, 296 European ancestry controls"	EUR	6p25.3	6	417727	1.38	C	2.00E-06	A	C	0.0484	0.4438	0.3095	0.4742	0.4223	0.33964	A	DER	cancer	703
rs9383951	22383897	Long J	Breast cancer	cancer	"2,918 Chinese ancestry cases, 2,324 Chinese ancestry controls"	EAS	6q25.1	6	151974478	1.14	G	2.00E-06	G	C	0.8253	0.9957	0.9306	0.995	0.9652	0.94236	G	ANC	cancer	5242
rs9387478	23143601	Lan Q	Lung cancer	cancer	"5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls"	EAS	6q22.1	6	117465017	1.18	C	4.00E-10	C	A	0.0983	0.5605	0.502	0.495	0.2658	0.38432	A	DER	cancer	10054
rs941764	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	14q32.11	14	91374725	1.06	G	4.00E-10	A	G	0.7806	0.4481	0.1369	0.3529	0.2699	0.39768	G	ANC	cancer	22627
rs9430161	22327514	Postel-Vinay S	Ewing sarcoma	cancer	"Up to 427 European ancestry cases, up to 4,352 European ancestry controls"	EUR	1p36.22	1	10986798	2.2	G	1.00E-20	G	T	0.4675	0.8314	0.9196	0.7992	0.908	0.78514	T	DER	cancer	4779
rs944289	19198613	Gudmundsson J	Thyroid cancer	cancer	"192 European ancestry cases, 37,196 European ancestry controls"	EUR	14q13.3	14	36180040	1.37	T	2.00E-09	C	T	0.1528	0.379	0.4613	0.5815	0.4632	0.40756	C	DER	cancer	37388
rs9443189	25217961	Al Olama AA	Prostate cancer	cancer	"34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls"	MIX	6q14.1	6	75786165	1.08	G	4.00E-08	A	G	0.5862	0.1412	0.378	0.1392	0.2485	0.29862	A	DER	cancer	87040
rs9485372	22383897	Long J	Breast cancer	cancer	"2,918 Chinese ancestry cases, 2,324 Chinese ancestry controls"	EAS	6q25.1	6	149287738	1.11	G	4.00E-12	G	A	0.795	0.8084	0.5774	0.836	0.7843	0.76022	G	ANC	cancer	5242
rs9502893	20686608	Low SK	Pancreatic cancer	cancer	"991 Japanese ancestry cases, 5,209 Japanese ancestry controls"	EAS	6p25.3	6	1339954	1.29	C	3.00E-07	C	T	0.5915	0.6282	0.3948	0.4344	0.5061	0.511	T	DER	cancer	6200
rs9510787	20512145	Bei JX	Nasopharyngeal carcinoma	cancer	"1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls"	EAS	13q12.12	13	23631056	1.2	G	2.00E-09	A	G	0.0416	0.1643	0.3244	0.2555	0.1687	0.1909	A	DER	cancer	3477
rs9543325	20101243	Petersen GM	Pancreatic cancer	cancer	"3,851 European, Chinese and other ancestry cases, 3,934 European, Chinese and other ancestry controls"	MIX	13q22.1	13	73342491	1.26	C	3.00E-11	C	T	0.9478	0.4308	0.4276	0.3897	0.3395	0.50708	C	ANC	cancer	7785
rs9573163	22158540	Wu C	Pancreatic cancer	cancer	"981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls"	EAS	13q22.1	13	73334709	1.26	G	5.00E-13	C	G	0.0976	0.598	0.5774	0.6511	0.6718	0.51918	C	DER	cancer	2972
rs9581943	25086665	Wolpin BM	Pancreatic cancer	cancer	"1,582 European ancestry cases, 5,203 European ancestry controls"	EUR	13q12.2	13	27919860	1.15	A	2.00E-09	G	A	0.0779	0.2666	0.3859	0.4304	0.545	0.34116	G	DER	cancer	6785
rs9600079	20676098	Takata R	Prostate cancer	cancer	"1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls"	EAS	13q22.1	13	73154002	1.18	T	3.00E-09	G	T	0.5189	0.3833	0.4474	0.4662	0.4427	0.4517	T	ANC	cancer	4969
rs961253	19011631	Houlston RS	Colorectal cancer	cancer	"1,902 European ancestry cases, 1,929 European ancestry controls"	EUR	20p12.3	20	6423634	1.12	A	2.00E-10	C	A	0.3669	0.3069	0.1071	0.3608	0.2986	0.28806	A	ANC	cancer	3831
rs9642880	24163127	Figueroa JD	Bladder cancer	cancer	"up to 2,305 European ancestry cases, up to 3,901 European ancestry controls"	EUR	8q24.21	8	127705823	1.24	T	4.00E-38	G	T	0.8079	0.4294	0.3135	0.4493	0.5838	0.51678	T	ANC	cancer	6206
rs9642880	20348956	Kiemeney LA	Urinary bladder cancer	cancer	"1,889 European ancestry cases, 39,310 European ancestry controls"	EUR	8q24.21	8	127705823	1.21	T	7.00E-12	G	T	0.8079	0.4294	0.3135	0.4493	0.5838	0.51678	T	ANC	cancer	41199
rs965513	19198613	Gudmundsson J	Thyroid cancer	cancer	"192 European ancestry cases, 37,196 European ancestry controls"	EUR	9q22.33	9	97793827	1.75	A	2.00E-27	A	G	0.1067	0.3026	0.129	0.337	0.1871	0.21248	G	DER	cancer	37388
rs966423	22267200	Gudmundsson J	Thyroid cancer	cancer	"27,758 European ancestry individuals"	EUR	2q35	2	217445617	1.34	C	1.00E-09	C	T	0.8457	0.6095	0.7857	0.4274	0.8037	0.6944	C	ANC	cancer	27758
rs9693444	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	8p12	8	29652100	1.07	A	9.00E-14	A	C	0.3828	0.3098	0.2996	0.3459	0.2188	0.31138	C	DER	cancer	22627
rs9783347	23180869	Wu C	Pancreatic cancer	cancer	642 European ancestry cases	EUR	11p15.1	11	18363391	1.36	A	9.00E-06	A	G	0.621	0.2752	0.0367	0.2913	0.3139	0.30762	A	ANC	cancer	642
rs9790517	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	4q24	4	105163621	1.05	T	4.00E-08	C	T	0.053	0.2867	0.6349	0.2117	0.2802	0.2933	C	DER	cancer	22627
rs981782	17529967	Easton DF	Breast cancer	cancer	"390 cases,364 controls"	EUR	5p12	5	45285616	1.04	C	9.00E-06	A	C	0.0257	0.4323	0.3462	0.4662	0.2025	0.29458	A	DER	cancer	754
rs9864370	23502783	Weinhold N	Multiple myeloma (hyperdiploidy)	cancer	"up to 1,660 European ancestry cases, 7,306 European ancestry controls"	EUR	3q26.2	3	169198452	2.04	C	9.00E-06	T	C	0.0673	0.0562	0.1121	0.0716	0.229	0.10724	T	DER	cancer	8966
rs9868873	21642993	Wu C	Esophageal cancer	cancer	"2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls"	EAS	3q21.1	3	123012063	1.19	G	1.00E-07	G	A	0.2057	0.8357	0.7867	0.9006	0.8354	0.71282	A	DER	cancer	4075
rs9874556	23180869	Wu C	Pancreatic cancer	cancer	642 European ancestry cases	EUR	3p26.2	3	3314490	1.31	A	4.00E-06	A	G	0.5008	0.3573	0.0357	0.4761	0.3456	0.3431	A	ANC	cancer	642
rs9905704	23666239	Chung CC	Testicular germ cell tumor	cancer	"582 European ancestry male cases, 1,056 European ancestry male controls"	EUR	17q22	17	58555182	1.27	T	4.00E-13	G	T	0.9614	0.8184	1	0.6461	0.864	0.85798	T	ANC	cancer	1638
rs9929218	19011631	Houlston RS	Colorectal cancer	cancer	"1,902 European ancestry cases, 1,929 European ancestry controls"	EUR	16q22.1	16	68787043	1.1	G	1.00E-08	G	A	0.733	0.7824	0.7669	0.7058	0.7393	0.74548	G	ANC	cancer	3831
rs995030	23666240	Ruark E	Testicular germ cell tumor	cancer	"986 European ancestry cases, 4,946 European ancestry controls"	EUR	12q21.32	12	88496894	2.26	G	2.00E-50	A	G	0.2511	0.8329	0.7321	0.7992	0.7873	0.68052	A	DER	cancer	5932
rs997363	24700089	Miura K	Cervical cancer	cancer	"226 Japanese ancestry cases, 186 Japanese ancestry controls"	EAS	2q36.3	2	227644742	1.986	C	1.00E-06	C	T	0.2141	0.4467	0.4137	0.4115	0.547	0.4066	C	ANC	cancer	412
rs999737	23535729	Michailidou K	Breast cancer	cancer	"10,052 European ancestry cases, 12,575 European ancestry controls"	EUR	14q24.1	14	68567965	1.09	C	3.00E-19	C	T	0.9924	0.8343	0.997	0.7903	0.9121	0.90522	C	ANC	cancer	22627
rs10026364	21347282	Lettre G	Hypertension	cardiovascular	"4,069 African American cases, 3,848 African American controls"	AFR	4q28.3	4	134601585	1.28	T	4.00E-06	C	T	0.1664	0.0231	0.0288	0.0179	0.0481	0.05686	C	DER	CVD	7917
rs10033464	17603472	Gudbjartsson DF	Atrial fibrillation/atrial flutter	cardiovascular	"550 European ancestry cases, 4,476 European ancestry controls"	EUR	4q25	4	110799605	1.39	T	7.00E-11	T	G	0.1914	0.1513	0.255	0.0974	0.1994	0.1789	G	DER	CVD	5026
rs10428132	23872634	Bezzina CR	Brugada syndrome	cardiovascular	"312 European ancestry cases, 1,115 European ancestry controls"	EUR	3p22.2	3	38736063	2.55	T	1.00E-68	T	G	0.1188	0.4294	0.2073	0.4165	0.3344	0.30128	G	DER	CVD	1427
rs10510921	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	3p14.1	3	64926476	3.52	G	7.00E-06	A	G	0.0802	0.0793	0	0.0189	0.0593	0.04754	A	DER	CVD	1357
rs10757272	22286173	Low SK	Intracranial aneurysm	cardiovascular	"1,383 Japanese ancestry cases, 5,484 Japanese ancestry controls"	EAS	9p21.3	9	22088261	1.213	T	2.00E-07	C	T	0.18	0.4164	0.6875	0.4861	0.5593	0.46586	C	DER	CVD	6867
rs10757274	22751097	Lu X	Coronary heart disease	cardiovascular	"1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls"	EAS	9p21.3	9	22096056	1.37	G	8.00E-45	A	G	0.1755	0.4179	0.5288	0.492	0.4836	0.41956	A	DER	CVD	6534
rs10757278	17478679	Helgadottir A	Myocardial infarction	cardiovascular	"1,607 European ancestry cases, 6,728 European ancestry controls"	EUR	9p21.3	9	22124478	1.28	G	1.00E-20	A	G	0.1589	0.4553	0.5437	0.4742	0.5041	0.42724	A	DER	CVD	8335
rs10821415	22544366	Ellinor PT	Atrial fibrillation	cardiovascular	"6,707 European ancestry cases, 52,426 European ancestry controls"	EUR	9q22.32	9	94951177	1.11	A	4.00E-11	C	A	0.1868	0.353	0.2758	0.4016	0.2863	0.3007	C	DER	CVD	59133
rs10824026	22544366	Ellinor PT	Atrial fibrillation	cardiovascular	"6,707 European ancestry cases, 52,426 European ancestry controls"	EUR	10q22.2	10	73661450	1.15	A	4.00E-09	G	A	0.2549	0.6326	0.6597	0.84	0.7444	0.62632	G	DER	CVD	59133
rs10865924	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	3p22.1	3	42852935	1.84	G	3.00E-06	C	G	0.0166	0.513	0.5913	0.3231	0.2986	0.34852	C	DER	CVD	1357
rs10911021	23982368	Qi L	Cardiovascular heart disease in diabetics	cardiovascular	"669 European ancestry cases, 1,641 European ancestry controls"	EUR	1q25.3	1	182112825	1.36	C	2.00E-08	C	T	0.4841	0.6758	0.7183	0.7087	0.6861	0.6546	T	DER	CVD	2310
rs10933436	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	2q37.1	2	233133771	1.06	A	7.00E-06	C	A	0.5386	0.3847	0.497	0.4573	0.4703	0.46958	A	ANC	CVD	86995
rs10953541	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	Coronary heart disease	cardiovascular	"8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls"	MIX	7q22.3	7	107604100	1.08	C	3.00E-08	C	T	0.9909	0.8934	0.8522	0.7932	0.8395	0.87384	C	ANC	CVD	30482
rs10958409	18997786	Bilguvar K	Intracranial aneurysm	cardiovascular	"1,580 European ancestry cases, 6,276 European ancestry controls"	EUR	8q11.23	8	54414531	1.36	A	1.00E-10	G	A	0.1846	0.3689	0.2887	0.1441	0.3855	0.27436	G	DER	CVD	7856
rs11065987	23297363	Cordell HJ	Tetralogy of Fallot	cardiovascular	"835 European ancestry cases, 5,159 European ancestry controls"	EUR	12q24.12	12	111634620	1.344	G	8.00E-11	A	G	0.0174	0.2248	0.003	0.4195	0.0603	0.145	A	DER	CVD	5994
rs11066280	22751097	Lu X	Coronary heart disease	cardiovascular	"1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls"	EAS	12q24.13	12	112379979	1.19	A	2.00E-11	T	A	8.00E-04	0.0029	0.2163	0	0.0041	0.04482	T	DER	CVD	6534
rs11206510	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	1p32.3	1	55030366	1.08	T	9.00E-08	T	C	0.8654	0.8833	0.9554	0.828	0.9663	0.89968	C	DER	CVD	86995
rs11206510	19198609	Kathiresan S	Myocardial infarction (early onset)	cardiovascular	"2,967 European ancestry cases, 3,075 European ancestry controls"	EUR	1p32.3	1	55030366	1.15	T	1.00E-08	T	C	0.8654	0.8833	0.9554	0.828	0.9663	0.89968	C	DER	CVD	6042
rs11211480	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	1p33	1	47227548	1.9278966	G	2.00E-06	A	G	0.1422	0.389	0.0129	0.5726	0.3671	0.29676	A	DER	CVD	1357
rs1122608	19198609	Kathiresan S	Myocardial infarction (early onset)	cardiovascular	"2,967 European ancestry cases, 3,075 European ancestry controls"	EUR	19p13.2	19	11052925	1.15	G	2.00E-09	G	T	0.9887	0.853	0.9206	0.7505	0.7505	0.85266	G	ANC	CVD	6042
rs1122608	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	19p13.2	19	11052925	1.14	G	1.00E-09	G	T	0.9887	0.853	0.9206	0.7505	0.7505	0.85266	G	ANC	CVD	86995
rs112511621	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	12q21.32	12	88254303	2.4087	T	6.00E-06	C	T	0.0265	0.134	0.001	0.2495	0.0501	0.09222	C	DER	CVD	1357
rs114397494	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	5q14.2	5	83114977	2.96	G	5.00E-06	A	G	0.0038	0.0591	0.0655	0.0338	0.0573	0.0439	A	DER	CVD	1357
rs1152591	22544366	Ellinor PT	Atrial fibrillation	cardiovascular	"6,707 European ancestry cases, 52,426 European ancestry controls"	EUR	14q23.2	14	64214130	1.13	A	6.00E-13	A	G	0.0681	0.4294	0.2629	0.4573	0.4939	0.34232	G	DER	CVD	59133
rs115384187	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	1q32.1	1	203195061	6.4585	A	9.00E-06	G	A	0	0.0029	0	0.0139	0	0.00336	G	DER	CVD	1357
rs11556924	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	7q32.2	7	130023656	1.09	C	9.00E-18	C	T	0.9735	0.7911	0.9504	0.6233	0.8252	0.8327	C	ANC	CVD	86995
rs11646213	19304780	Org E	Hypertension	cardiovascular	"364 European ancestry cases, 590 European ancestry controls"	EUR	16q23.3	16	82609046	1.28	T	8.00E-06	A	T	0.1944	0.4352	0.1786	0.5815	0.4888	0.3757	A	DER	CVD	954
rs11661542	20364137	Yasuno K	Intracranial aneurysm	cardiovascular	"2,780 European ancestry cases, 12,515 European ancestry controls"	EUR	18q11.2	18	22643732	1.22	C	1.00E-12	C	A	0.9493	0.7608	0.5506	0.4881	0.6104	0.67184	C	ANC	CVD	15295
rs116688600	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	5p14.1	5	26746274	5.07	C	9.00E-06	T	C	0.003	0.0303	0	0.0268	0.0235	0.01672	C	ANC	CVD	1357
rs11708996	23872634	Bezzina CR	Brugada syndrome	cardiovascular	"312 European ancestry cases, 1,115 European ancestry controls"	EUR	3p22.2	3	38592432	1.73	C	1.00E-14	G	C	0.0182	0.1354	0.0188	0.1461	0.1708	0.09786	G	DER	CVD	1427
rs11752643	21971053	Takeuchi F	Coronary heart disease	cardiovascular	"806 Japanese ancestry cases, 1,337 Japanese ancestry controls"	EAS	6p21.32	6	32701596	1.26	T	5.00E-07	C	T	0.003	0.0101	0.0198	0.0258	0.0092	0.01358	C	DER	CVD	2143
rs118067775	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	12q13.11	12	48679011	4.12	C	1.00E-06	T	C	0.0023	0.036	0	0.0328	0.0061	0.01544	T	DER	CVD	1357
rs11856574	22247754	Murray SS	Life threatening arrhythmia	cardiovascular	"607 European ancestry cases, 297 European ancestry controls"	EUR	15q13.1	15	29439240	2.02	G	5.00E-06	G	A	0.795	0.8285	0.6528	0.8598	0.8037	0.78796	G	ANC	CVD	904
rs11984041	22306652	Bellenguez C	Stroke	cardiovascular	"3,548 European ancestry cases, 5,972 European ancestry controls"	EUR	7p21.1	7	18992312	1.42	T	2.00E-11	C	T	0.2141	0.0764	0	0.0964	0.092	0.09578	C	DER	CVD	9520
rs12190287	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	6q23.2	6	133893387	1.08	C	1.00E-12	C	G	0.9607	0.536	0.5903	0.6123	0.4724	0.63434	C	ANC	CVD	86995
rs1231206	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	17p13.3	17	2222311	1.07	A	9.00E-10	G	A	0.4115	0.3285	0.25	0.3668	0.3875	0.34886	G	DER	CVD	86995
rs12413409	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	10q24.32	10	102959339	1.12	G	1.00E-09	G	A	0.9584	0.8055	0.7143	0.9105	0.7791	0.83356	G	ANC	CVD	86995
rs12413409	20364137	Yasuno K	Intracranial aneurysm	cardiovascular	"2,780 European ancestry cases, 12,515 European ancestry controls"	EUR	10q24.32	10	102959339	1.29	G	1.00E-09	G	A	0.9584	0.8055	0.7143	0.9105	0.7791	0.83356	G	ANC	CVD	15295
rs12425791	19369658	Ikram MA	Stroke	cardiovascular	"19,602 European ancestry individuals"	EUR	12p13.33	12	674318	1.27	A	1.00E-09	G	A	0.0991	0.2594	0.255	0.2117	0.3364	0.23232	G	DER	CVD	19602
rs12524865	22751097	Lu X	Coronary heart disease	cardiovascular	"1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls"	EAS	6q23.2	6	133875536	1.11	C	2.00E-07	C	A	0.5439	0.5403	0.502	0.7097	0.5675	0.57268	C	ANC	CVD	6534
rs12526453	19198609	Kathiresan S	Myocardial infarction (early onset)	cardiovascular	"2,967 European ancestry cases, 3,075 European ancestry controls"	EUR	6p24.1	6	12927312	1.12	C	1.00E-09	C	G	0.8941	0.7089	0.996	0.66	0.819	0.8156	C	ANC	CVD	6042
rs12526453	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	6p24.1	6	12927312	1.1	C	1.00E-09	C	G	0.8941	0.7089	0.996	0.66	0.819	0.8156	C	ANC	CVD	86995
rs12936587	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	17p11.2	17	17640408	1.07	G	4.00E-10	G	A	0.7443	0.6484	0.8889	0.5537	0.7965	0.72636	A	DER	CVD	86995
rs12993904	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	2p25.2	2	5999574	1.93	G	9.00E-07	C	G	0.1899	0.3746	0.2857	0.508	0.3405	0.33974	G	ANC	CVD	1357
rs13232179	21347282	Lettre G	Coronary heart disease	cardiovascular	"260 African American cases, 5,053 African American controls"	AFR	7q36.1	7	151423862	1.67	A	1.00E-06	T	A	0.0998	0.1167	0.494	0.1093	0.3804	0.24004	T	DER	CVD	5313
rs1333040	20364137	Yasuno K	Intracranial aneurysm	cardiovascular	"2,780 European ancestry cases, 12,515 European ancestry controls"	EUR	9p21.3	9	22083405	1.32	T	2.00E-22	C	T	0.6415	0.513	0.7044	0.5736	0.6084	0.60818	C	DER	CVD	15295
rs1333049	21606135	Wild PS	Coronary heart disease	cardiovascular	"2,078 European ancestry cases, 2,953 European ancestry controls"	EUR	"9p21.3, 9p21.3[rs1333048]; 9p21.3[rs1333049]"	9	22125504	1.27	C	7.00E-58	G	C	0.2133	0.4553	0.5367	0.4722	0.4908	0.43366	C	ANC	CVD	5031
rs13333226	21082022	Padmanabhan S	Hypertension	cardiovascular	"1,621 extreme cases, 1,699 controls"	EUR	16p12.3	16	20354332	1.15	A	4.00E-11	A	G	0.6619	0.7507	0.9157	0.7982	0.7004	0.76538	G	DER	CVD	3320
rs13376333	20173747	Ellinor PT	Atrial fibrillation	cardiovascular	"1,335 European ancestry cases, 12,844 European ancestry controls"	EUR	1q21.3	1	154841877	1.52	T	2.00E-21	C	T	0.3003	0.1744	0.0308	0.3042	0.2014	0.20222	T	ANC	CVD	14179
rs13407662	23041239	Traylor M	Stroke (ischemic)	cardiovascular	"12,389 European ancestry cases, 62,004 European ancestry controls"	EUR	2p16.2	2	53555422	1.95	T	5.00E-08	C	T	0.0492	0.0389	0.001	0.0417	0.0123	0.02862	C	DER	CVD	74393
rs1364044	22990015	Arning A	Stroke (pediatric)	cardiovascular	270 European ancestry trios	EUR	5p13.2	5	33879687	1.91	T	3.00E-06	C	T	0.4047	0.4424	0.38	0.34	0.2955	0.37252	C	DER	CVD	270
rs1412444	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	Coronary heart disease	cardiovascular	"8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls"	MIX	10q23.31	10	89243170	1.09	T	3.00E-13	C	T	0.4228	0.4582	0.3175	0.3608	0.546	0.42106	C	DER	CVD	30482
rs144803255	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	15q21.3	15	56403547	4.1709	A	9.00E-07	G	A	0.0023	0.1052	0.002	0.0219	0.0092	0.02812	G	DER	CVD	1357
rs1466535	22055160	Bown MJ	Abdominal aortic aneurysm	cardiovascular	"1,737 European ancestry cases, 5,435 European ancestry controls, 129 cases"	EUR	12q13.3	12	57140687	1.15	G	5.00E-10	G	A	0.8381	0.5432	0.7867	0.6968	0.6554	0.70404	G	ANC	CVD	7301
rs1475591	21347282	Lettre G	Hypertension	cardiovascular	"4,069 African American cases, 3,848 African American controls"	AFR	21q22.11	21	31068221	1.18	T	6.00E-06	T	C	0.4644	0.0634	0.0913	0.0348	0.1104	0.15286	T	ANC	CVD	7917
rs148071215	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	14q31.1	14	82806309	4.3652	A	4.00E-07	G	A	0	0.0086	0	0.0169	0.0051	0.00612	G	DER	CVD	1357
rs1504749	20364137	Yasuno K	Intracranial aneurysm	cardiovascular	"2,780 European ancestry cases, 12,515 European ancestry controls"	EUR	8q11.23	8	54398151	1.17	C	5.00E-07	A	C	0.4811	0.4625	0.3313	0.2068	0.4294	0.38222	C	ANC	CVD	15295
rs1531070	23708190	Hu Z	Congenital heart malformation	cardiovascular	"945 Han Chinese ancestry cases, 1,246 Han Chinese ancestry controls"	EAS	4q31.1	4	139874173	1.4	A	5.00E-12	G	A	0.0643	0.2392	0.127	0.4125	0.2832	0.22524	G	DER	CVD	2191
rs16851055	23041239	Traylor M	Stroke (ischemic)	cardiovascular	"12,389 European ancestry cases, 62,004 European ancestry controls"	EUR	3q23	3	141080371	1.12	G	6.00E-07	G	A	0.5507	0.8271	0.8115	0.8211	0.8732	0.77672	G	ANC	CVD	74393
rs16861990	22672568	Heit JA	Venous thromboembolism	cardiovascular	"1,503 European and other ancestry cases, 1,459 European and other ancestry controls"	MIX	1q24.2	1	169165889	2.02	C	2.00E-12	A	C	0.0197	0.0677	0.0595	0.0586	0.1237	0.06584	A	DER	CVD	2962
rs16893526	21606135	Wild PS	Coronary heart disease	cardiovascular	"2,078 European ancestry cases, 2,953 European ancestry controls"	EUR	6q14.1	6	81805598	1.13	G	5.00E-06	G	A	0.9115	0.9467	0.8403	0.9195	0.9059	0.90478	G	ANC	CVD	5031
rs17042171	19597492	Benjamin EJ	Atrial fibrillation	cardiovascular	"3,413 cases, 37,105 referents"	EUR	4q25	4	110787131	1.65	A	4.00E-63	C	A	0.2542	0.2839	0.4524	0.1551	0.136	0.25632	C	DER	CVD	40518
rs17114036	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	1p32.2	1	56497149	1.17	A	4.00E-19	A	G	0.8464	0.9337	0.9732	0.8787	0.9397	0.91434	G	DER	CVD	86995
rs17156371	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	10p13	10	15171101	2.1463	A	5.00E-06	C	A	0.1528	0.0504	0.1448	0.1113	0.0511	0.10208	C	DER	CVD	1357
rs17228212	17634449	Samani NJ	Coronary heart disease	cardiovascular	"1,926 European ancestry cases, 2,938 European ancestry controls"	EUR	15q22.33	15	67166301	1.21	C	2.00E-07	T	C	0.0976	0.1326	0.001	0.2903	0.1227	0.12884	T	DER	CVD	4864
rs17312438	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	7q21.11	7	85937160	8.37	C	9.00E-06	T	C	0	0.0072	0	0.0149	0.0041	0.00524	T	DER	CVD	1357
rs1735151	21347282	Lettre G	Hypertension	cardiovascular	"4,069 African American cases, 3,848 African American controls"	AFR	21q22.2	21	39751374	1.16	T	9.00E-06	T	C	0.6399	0.1772	0.3403	0.1551	0.2127	0.30504	T	ANC	CVD	7917
rs17375901	19597492	Benjamin EJ	Atrial fibrillation	cardiovascular	"3,413 cases, 37,105 referents"	EUR	1p36.22	1	11792459	1.26	T	6.00E-07	C	T	0.0197	0.0086	0.002	0.0686	0.0511	0.03	C	DER	CVD	40518
rs1746048	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	10q11.21	10	44280376	1.09	C	3.00E-10	C	T	0.4554	0.7695	0.6895	0.8549	0.6472	0.6833	T	DER	CVD	86995
rs1746048	19198609	Kathiresan S	Myocardial infarction (early onset)	cardiovascular	"2,967 European ancestry cases, 3,075 European ancestry controls"	EUR	10q11.21	10	44280376	1.17	C	7.00E-09	C	T	0.4554	0.7695	0.6895	0.8549	0.6472	0.6833	T	DER	CVD	6042
rs17465637	19198609	Kathiresan S	Myocardial infarction (early onset)	cardiovascular	"2,967 European ancestry cases, 3,075 European ancestry controls"	EUR	1q41	1	222650187	1.14	C	1.00E-09	A	C	0.1868	0.5144	0.6052	0.7376	0.5798	0.52476	C	ANC	CVD	6042
rs17465637	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	1q41	1	222650187	1.14	C	1.00E-08	A	C	0.1868	0.5144	0.6052	0.7376	0.5798	0.52476	C	ANC	CVD	86995
rs17486278	25101718	Lee JH	Pulmonary artery enlargement and chronic obstructive pulmonary disease	cardiovascular	"1,006 European ancestry cases, 260 African American cases, 2,712 European ancestry smoker controls, 1,749 African American smoker controls"	MIX	15q25.1	15	78575140	1.42	C	7.00E-10	A	C	0.2973	0.2219	0.2887	0.3658	0.1943	0.2736	A	DER	CVD	5727
rs17609940	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	6p21.31	6	35067023	1.07	G	1.00E-08	G	C	0.9894	0.8429	0.9841	0.8111	0.9417	0.91384	G	ANC	CVD	86995
rs17672135	17554300	WTCCC	Coronary heart disease	cardiovascular	"1,926 European ancestry cases, 2,938 European ancestry controls"	EUR	1q43	1	240282296	1.43	T	2.00E-06	T	C	0.8956	0.9107	0.8512	0.8907	0.8446	0.87856	T	ANC	CVD	4864
rs1842896	22751097	Lu X	Coronary heart disease	cardiovascular	"1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls"	EAS	4q32.1	4	155590307	1.14	T	1.00E-11	G	T	0.3903	0.5144	0.7302	0.5298	0.6207	0.55708	G	DER	CVD	6534
rs1902341	20610895	Koriyama H	Peripheral artery disease	cardiovascular	"195 Japanese ancestry cases, 1,358 Japanese ancestry controls"	EAS	3p23	3	31754078	1.31	C	5.00E-07	C	T	0.4228	0.4524	0.375	0.5577	0.5583	0.47324	C	ANC	CVD	1553
rs1994016	21239051	Reilly MP	Coronary artery disease	cardiovascular	"1,808 European ancestry cases, 915 European ancestry controls"	EUR	15q25.1	15	78787892	1.19	C	5.00E-13	C	T	0.9039	0.7161	0.9087	0.6004	0.7209	0.77	C	ANC	CVD	2723
rs2040862	22544366	Ellinor PT	Atrial fibrillation	cardiovascular	"6,707 European ancestry cases, 52,426 European ancestry controls"	EUR	5q31.2	5	138084300	1.12	T	3.00E-07	C	T	0.0537	0.0937	0.001	0.1541	0.0685	0.0742	C	DER	CVD	59133
rs2068666	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	1q32.1	1	204948452	2.38	G	9.00E-06	T	G	0.0038	0.0548	0	0.0915	0.1278	0.05558	T	DER	CVD	1357
rs2084898	22990015	Arning A	Stroke (pediatric)	cardiovascular	270 European ancestry trios	EUR	11q23.3	11	120156040	3.04	A	4.00E-07	G	A	0.0303	0.1369	0.0159	0.1471	0.0767	0.08138	G	DER	CVD	270
rs2106261	22544366	Ellinor PT	Atrial fibrillation	cardiovascular	"6,707 European ancestry cases, 52,426 European ancestry controls"	EUR	16q22.3	16	73017721	1.24	T	3.00E-16	C	T	0.2905	0.2392	0.2778	0.1789	0.2393	0.24514	C	DER	CVD	59133
rs2107595	23041239	Traylor M	Stroke (ischemic)	cardiovascular	"12,389 European ancestry cases, 62,004 European ancestry controls"	EUR	7p21.1	7	19009765	1.39	A	2.00E-16	G	A	0.2103	0.2161	0.3581	0.168	0.3139	0.25328	G	DER	CVD	74393
rs2123536	22751097	Lu X	Coronary heart disease	cardiovascular	"1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls"	EAS	2p24.1	2	19745816	1.12	T	7.00E-11	T	C	0.4191	0.2349	0.3363	0.0586	0.183	0.24638	C	DER	CVD	6534
rs216172	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	17p13.3	17	2223210	1.07	C	1.00E-09	G	C	0.3737	0.3271	0.25	0.3668	0.3916	0.34184	G	DER	CVD	86995
rs2200733	18991354	Gretarsdottir S	Stroke (ischemic)	cardiovascular	"1,661 European ancestry cases, 10,815 European ancestry controls"	EUR	4q25	4	110789013	1.26	T	2.00E-10	C	T	0.2315	0.2767	0.4514	0.1551	0.1309	0.24912	C	DER	CVD	12476
rs2200733	17603472	Gudbjartsson DF	Atrial fibrillation/atrial flutter	cardiovascular	"550 European ancestry cases, 4,476 European ancestry controls"	EUR	4q25	4	110789013	1.72	T	3.00E-41	C	T	0.2315	0.2767	0.4514	0.1551	0.1309	0.24912	C	DER	CVD	5026
rs2217560	23502781	Germain M	Pulmonary arterial hypertension (without BMPR2 mutations)	cardiovascular	"340 European ancestry cases, 1,068 European ancestry controls"	EUR	18q22.3	18	72483704	1.97	G	7.00E-10	G	A	0.4826	0.1052	0.2302	0.1054	0.181	0.22088	G	ANC	CVD	1408
rs2228638	23297363	Cordell HJ	Tetralogy of Fallot	cardiovascular	"835 European ancestry cases, 5,159 European ancestry controls"	EUR	10p11.22	10	33186354	1.447	T	2.00E-07	C	T	0.0083	0.245	0.128	0.1083	0.1319	0.1243	C	DER	CVD	5994
rs2238151	23041239	Traylor M	Stroke (ischemic)	cardiovascular	"12,389 European ancestry cases, 62,004 European ancestry controls"	EUR	12q24.12	12	111774029	1.13	T	1.00E-06	T	C	0.034	0.5793	0.0685	0.6869	0.3088	0.3355	C	DER	CVD	74393
rs2259816	19198612	Erdmann J	Coronary heart disease	cardiovascular	"1,222 European ancestry cases, 1,298 European ancestry controls"	EUR	12q24.31	12	120997784	1.08	T	5.00E-07	G	T	0.1263	0.3963	0.4752	0.3787	0.5061	0.37652	A	DER	CVD	2520
rs2280543	22286173	Low SK	Intracranial aneurysm	cardiovascular	"1,383 Japanese ancestry cases, 5,484 Japanese ancestry controls"	EAS	11p15.5	11	203788	1.251	T	3.00E-06	C	T	0.0651	0.0389	0.1548	0.0328	0.1053	0.07938	C	DER	CVD	6867
rs2306374	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	3q22.3	3	138401110	1.12	C	3.00E-08	T	C	0.0681	0.0634	0.0258	0.1451	0.091	0.07868	T	DER	CVD	86995
rs2359536	20610895	Koriyama H	Peripheral artery disease	cardiovascular	"195 Japanese ancestry cases, 1,358 Japanese ancestry controls"	EAS	10p12.31	10	20610679	1.84	C	2.00E-06	T	C	0.2579	0.2421	0.0962	0.3539	0.3006	0.25014	T	DER	CVD	1553
rs2383207	20622881	Gretarsdottir S	Abdominal aortic aneurysm	cardiovascular	"1,292 European ancestry cases, 30,503 European ancestry controls"	EUR	9p21.3	9	22115960	1.27	G	2.00E-08	A	G	0.9667	0.5461	0.6925	0.508	0.5982	0.6623	G	ANC	CVD	31795
rs2388896	23297363	Cordell HJ	Tetralogy of Fallot	cardiovascular	"835 European ancestry cases, 5,159 European ancestry controls"	EUR	10p14	10	8912261	1.28	G	9.00E-08	A	G	0.5976	0.7478	0.8304	0.6262	0.681	0.6966	A	DER	CVD	5994
rs2398162	17554300	WTCCC	Hypertension	cardiovascular	"1,952 European ancestry cases, 2,938 European ancestry controls"	EUR	15q26.2	15	96287321	1.31	A	6.00E-06	A	G	0.9576	0.6628	0.3284	0.7863	0.7198	0.69098	A	ANC	CVD	4890
rs2474937	23708190	Hu Z	Congenital heart malformation	cardiovascular	"945 Han Chinese ancestry cases, 1,246 Han Chinese ancestry controls"	EAS	1p12	1	118360355	1.4	G	8.00E-10	A	G	0.3616	0.1974	0.0923	0.2306	0.2873	0.23384	A	DER	CVD	2191
rs2505083	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	Coronary heart disease	cardiovascular	"8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls"	MIX	10p11.23	10	30046193	1.07	C	4.00E-08	T	C	0.0356	0.4207	0.2044	0.4284	0.2904	0.2759	T	DER	CVD	30482
rs2808382	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	1q32.3	1	211918606	2.7742	C	8.00E-06	G	C	0.0121	0.0288	0	0.0696	0.0409	0.03028	G	DER	CVD	1357
rs2820037	17554300	WTCCC	Hypertension	cardiovascular	"1,952 European ancestry cases, 2,938 European ancestry controls"	AFR	1q43	1	239273242	1.54	T	8.00E-07	A	T	0.407	0.17	0.0645	0.166	0.1503	0.19156	T	ANC	CVD	4890
rs2895811	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	14q32.2	14	99667605	1.07	C	1.00E-10	T	C	0.23	0.2767	0.2599	0.4264	0.4499	0.32858	T	DER	CVD	86995
rs2916733	21799462	Srinivasan Y	Epirubicin-induced leukopenia	cardiovascular	"67 Japanese ancestry cases, 203 Japanese ancestry controls"	EAS	8p23.1	8	6465757	2.74	G	2.00E-09	G	A	0.4395	0.7478	0.5099	0.8062	0.6656	0.6338	G	ANC	CVD	270
rs3184504	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	12q24.12	12	111446804	1.07	T	6.00E-06	T	C	0.0189	0.2536	0.003	0.4642	0.0685	0.16164	C	DER	CVD	86995
rs365302	21606135	Wild PS	Coronary heart disease	cardiovascular	"2,078 European ancestry cases, 2,953 European ancestry controls"	EUR	6q25.3	6	159225301	1.11	C	8.00E-07	T	C	0.7194	0.3429	0.7232	0.2276	0.4131	0.48524	C	ANC	CVD	5031
rs3733860	23650146	Tang W	Venous thromboembolism	cardiovascular	"1,618 European ancestry cases, 42,881 European ancestry controls"	EUR	5q13.3	5	76326989	1.19	A	8.00E-06	C	A	0.0083	0.232	0.4563	0.1093	0.1339	0.18796	C	DER	CVD	44499
rs3739998	21088011	Erdmann J	Coronary heart disease	cardiovascular	"1,157 European ancestry cases, 1,748 European ancestry controls"	EUR	10p11.23	10	30027143	1.15	C	1.00E-11	C	G	0.9402	0.5476	0.8175	0.5785	0.7342	0.7236	C	ANC	CVD	2905
rs3756008	21980494	Germain M	Venous thromboembolism	cardiovascular	"1,542 European ancestry cases, 1,110 European ancestry controls"	EUR	4q35.2	4	186264231	1.4	T	6.00E-11	A	T	0.2239	0.3314	0.3204	0.3926	0.3538	0.32442	A	DER	CVD	2652
rs3782886	24916648	Hirokawa M	Myocardial infarction	cardiovascular	"1,666 Japanese ancestry cases, 3,198 Japanese ancestry controls"	EAS	"12q24.12, 12q24.12[rs3782886]; 12q24.12[rs671]"	12	111672685	1.46	T	1.00E-14	T	C	1	0.9971	0.8254	1	1	0.9645	T	ANC	CVD	4864
rs3782889	23364394	Lee JY	Coronary heart disease	cardiovascular	"2,123 Korean ancestry cases, 3,591 Korean ancestry controls"	EAS	12q24.11	12	110912851	1.26	G	4.00E-14	A	G	0.0514	0.0259	0.2024	0.0746	0.1524	0.10134	G	ANC	CVD	5714
rs3803915	24916648	Hirokawa M	Myocardial infarction	cardiovascular	"1,666 Japanese ancestry cases, 3,198 Japanese ancestry controls"	EAS	19p13.3	19	2160530	1.12	C	4.00E-09	C	A	0.8676	0.8516	0.7599	0.9145	0.7945	0.83762	C	ANC	CVD	4864
rs3807989	22544366	Ellinor PT	Atrial fibrillation	cardiovascular	"6,707 European ancestry cases, 52,426 European ancestry controls"	EUR	7q31.2	7	116546187	1.11	G	4.00E-12	A	G	0.2958	0.6354	0.7252	0.6064	0.6462	0.5818	A	DER	CVD	59133
rs3825807	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	15q25.1	15	78796769	1.08	A	1.00E-12	A	G	0.8888	0.7032	0.8482	0.5726	0.6759	0.73774	G	DER	CVD	86995
rs3903239	22544366	Ellinor PT	Atrial fibrillation	cardiovascular	"6,707 European ancestry cases, 52,426 European ancestry controls"	EUR	1q24.2	1	170600176	1.14	G	8.00E-14	A	G	0.1536	0.3314	0.621	0.4254	0.2168	0.34964	A	DER	CVD	59133
rs41549217	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	6p21.33	6	31356108	4.6582	T	2.00E-07	G	T	0.0106	0.0605	0.0685	0.0408	0.0184	0.03976	G	DER	CVD	1357
rs425283	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	19q13.42	19	54660297	1.9644	A	9.00E-06	G	A	0.1142	0.098	0.0694	0.1372	0.2198	0.12772	A	ANC	CVD	1357
rs4253399	23650146	Tang W	Venous thromboembolism	cardiovascular	"1,618 European ancestry cases, 42,881 European ancestry controls"	EUR	4q35.2	4	186266940	1.24	G	3.00E-14	T	G	0.0688	0.3112	0.3194	0.3797	0.317	0.27922	T	DER	CVD	44499
rs4380028	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	Coronary heart disease	cardiovascular	"8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls"	MIX	15q25.1	15	78818751	1.07	C	4.00E-09	C	T	0.8162	0.5403	0.6091	0.6103	0.7382	0.66282	C	ANC	CVD	30482
rs45495792	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	19p13.13	19	12951613	2.11	G	1.00E-06	A	G	0.056	0.2262	0.0556	0.1809	0.136	0.13094	A	DER	CVD	1357
rs4618210	24916648	Hirokawa M	Myocardial infarction	cardiovascular	"1,666 Japanese ancestry cases, 3,198 Japanese ancestry controls"	EAS	3p24.3	3	17082892	1.1	G	3.00E-09	A	G	0.7481	0.487	0.6121	0.508	0.5654	0.58412	A	DER	CVD	4864
rs46522	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	17q21.32	17	48911235	1.06	T	2.00E-08	C	T	0.0605	0.4524	0.6835	0.5586	0.4836	0.44772	C	DER	CVD	86995
rs4665058	21738491	Arking DE	Sudden cardiac arrest	cardiovascular	"1,283 European ancestry cases, ~20,000 European ancestry controls"	EUR	2q24.2	2	159333698	1.92	A	2.00E-10	A	C	0.3003	0.0288	0.1488	0.0119	0.0777	0.1135	A	ANC	CVD	21283
rs469568	22990015	Arning A	Stroke (pediatric)	cardiovascular	270 European ancestry trios	EUR	5q35.3	5	179236407	1.77	A	8.00E-06	A	C	0.4039	0.6427	0.9395	0.4304	0.682	0.6197	C	DER	CVD	270
rs4773144	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	13q34	13	110308365	1.07	G	4.00E-09	A	G	0.3744	0.4366	0.3591	0.4473	0.3926	0.402	G	ANC	CVD	86995
rs482329	22247754	Murray SS	Life threatening arrhythmia	cardiovascular	"607 European ancestry cases, 297 European ancestry controls"	EUR	1q42.3	1	234680808	1.6	C	6.00E-06	G	C	0.6853	0.4582	0.1716	0.5775	0.3793	0.45438	G	DER	CVD	904
rs4937126	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	11q24.2	11	126412002	1.06	G	5.00E-06	G	A	0.674	0.6772	0.4792	0.6799	0.8037	0.6628	G	ANC	CVD	86995
rs4977574	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	"9p21.3, 9p21.3[rs4977574]; 9p21.3[rs1333049]"	9	22098575	1.29	G	1.00E-22	A	G	0.1407	0.4164	0.5308	0.492	0.4836	0.4127	A	DER	CVD	86995
rs4977574	21239051	Reilly MP	Coronary artery disease	cardiovascular	"1,808 European ancestry cases, 915 European ancestry controls"	EUR	"9p21.3, 9p21.3[rs4977574]; 9p21.3[rs1333049]"	9	22098575	1.3	G	5.00E-14	A	G	0.1407	0.4164	0.5308	0.492	0.4836	0.4127	A	DER	CVD	2723
rs4977574	24916648	Hirokawa M	Myocardial infarction	cardiovascular	"1,666 Japanese ancestry cases, 3,198 Japanese ancestry controls"	EAS	"9p21.3, 9p21.3[rs4977574]; 9p21.3[rs1333049]"	9	22098575	1.22	G	8.00E-06	A	G	0.1407	0.4164	0.5308	0.492	0.4836	0.4127	A	DER	CVD	4864
rs4977574	19198609	Kathiresan S	Myocardial infarction (early onset)	cardiovascular	"2,967 European ancestry cases, 3,075 European ancestry controls"	EUR	"9p21.3, 9p21.3[rs4977574]; 9p21.3[rs1333049]"	9	22098575	1.29	G	3.00E-44	A	G	0.1407	0.4164	0.5308	0.492	0.4836	0.4127	A	DER	CVD	6042
rs4979078	23650146	Tang W	Venous thromboembolism	cardiovascular	"1,618 European ancestry cases, 42,881 European ancestry controls"	EUR	9q31.3	9	112060841	1.21	C	3.00E-06	T	C	0.5688	0.3199	0.2401	0.1471	0.3088	0.31694	C	ANC	CVD	44499
rs501120	17634449	Samani NJ	Coronary heart disease	cardiovascular	"1,926 European ancestry cases, 2,938 European ancestry controls"	EUR	10q11.21	10	44258419	1.33	T	9.00E-08	T	C	0.4977	0.7767	0.6577	0.8539	0.637	0.6846	C	DER	CVD	4864
rs505922	21980494	Germain M	Venous thromboembolism	cardiovascular	"1,542 European ancestry cases, 1,110 European ancestry controls"	EUR	9q34.2	9	133273813	1.92	C	1.00E-34	T	C	0.3654	0.219	0.381	0.3678	0.3926	0.34516	T	DER	CVD	2652
rs514659	21239051	Reilly MP	Myocardial infarction in coronary artery disease	cardiovascular	"4,572 European ancestry cases, 2,739 European ancestry controls"	EUR	9q34.2	9	133266790	1.21	C	8.00E-09	A	C	0.4781	0.2291	0.381	0.3708	0.3926	0.37032	A	DER	CVD	7311
rs556621	22941190	Holliday EG	Stroke (ischemic)	cardiovascular	"421 European ancestry large artery atherosclerosis cases, 741 European ancestry ischemic stroke cases, 1,244 European ancestry controls"	EUR	6p21.1	6	44626422	1.21	T	5.00E-08	T	G	0.0779	0.4236	0.4901	0.2863	0.2965	0.31488	G	DER	CVD	2406
rs579459	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	9q34.2	9	133278724	1.1	C	4.00E-14	T	C	0.1286	0.1369	0.1895	0.2137	0.1401	0.16176	C	ANC	CVD	86995
rs599839	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	1p13.3	1	109279544	1.11	A	3.00E-10	G	A	0.1785	0.7478	0.9345	0.7783	0.7382	0.67546	G	DER	CVD	86995
rs6025	22672568	Heit JA	Venous thromboembolism	cardiovascular	"1,503 European and other ancestry cases, 1,459 European and other ancestry controls"	MIX	1q24.2	1	169549811	3.57	T	2.00E-22	T	C	0	0.0101	0	0.0119	0.0112	0.00664	C	DER	CVD	2962
rs61800638	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	1p22.3	1	86241900	3.387534	G	2.00E-06	T	G	8.00E-04	0.0951	0	0.0467	0.0112	0.03076	T	DER	CVD	1357
rs62204504	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	20q13.12	20	44166408	3.22	C	6.00E-06	T	C	0.0545	0.0245	0.0089	0.0477	0.0164	0.0304	T	DER	CVD	1357
rs6427196	23650146	Tang W	Venous thromboembolism	cardiovascular	"1,618 European ancestry cases, 42,881 European ancestry controls"	EUR	1q24.2	1	169511985	2.07	C	4.00E-51	C	G	0.208	0.0519	0	0.0686	0.0603	0.07776	G	DER	CVD	44499
rs646776	21239051	Reilly MP	Coronary artery disease	cardiovascular	"1,808 European ancestry cases, 915 European ancestry controls"	EUR	1p13.3	1	109275908	1.33	T	8.00E-11	C	T	0.6021	0.7781	0.9544	0.7873	0.7403	0.77244	T	ANC	CVD	2723
rs646776	19198609	Kathiresan S	Myocardial infarction (early onset)	cardiovascular	"2,967 European ancestry cases, 3,075 European ancestry controls"	EUR	1p13.3	1	109275908	1.19	T	8.00E-12	C	T	0.6021	0.7781	0.9544	0.7873	0.7403	0.77244	T	ANC	CVD	6042
rs6475606	22961961	Foroud T	Intracranial aneurysm	cardiovascular	"1,483 European ancestry cases, 1,683 European ancestry controls"	EUR	9p21.3	9	22081851	1.35	T	4.00E-08	C	T	0.9682	0.4885	0.7073	0.4851	0.5838	0.64658	T	ANC	CVD	3166
rs6499100	23297363	Cordell HJ	Tetralogy of Fallot	cardiovascular	"835 European ancestry cases, 5,159 European ancestry controls"	EUR	16q12.2	16	52797550	1.26	T	1.00E-06	T	C	0.7716	0.3559	0.2738	0.5169	0.5716	0.49796	C	DER	CVD	5994
rs653178	25009551	Kullo IJ	Peripheral artery disease	cardiovascular	"1,641 European ancestry cases, 1,604 European ancestry controls"	EUR	12q24.12	12	111569952	1.22	C	6.00E-07	C	T	0.0189	0.2522	0.003	0.4662	0.0675	0.16156	T	DER	CVD	3245
rs6536024	23650146	Tang W	Venous thromboembolism	cardiovascular	"1,618 European ancestry cases, 42,881 European ancestry controls"	EUR	"4q31.3, 4q32.1"	4	154622217	1.25	C	2.00E-13	T	C	0.3669	0.3617	0.6091	0.5109	0.4724	0.4642	T	DER	CVD	44499
rs6546043	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	2p14	2	63980311	2.079	A	7.00E-06	C	A	0.9402	0.6354	0.2153	0.7336	0.5307	0.61104	A	ANC	CVD	1357
rs6565681	21048783	Kamada F	Moyamoya disease	cardiovascular	"72 Japanese ancestry cases, 45 Japanese ancestry controls"	EAS	17q25.3	17	80374694	4.82	A	2.00E-08	A	G	0.0885	0.3674	0.4028	0.16	0.3579	0.27532	G	DER	CVD	117
rs6666258	22544366	Ellinor PT	Atrial fibrillation	cardiovascular	"6,707 European ancestry cases, 52,426 European ancestry controls"	EUR	1q21.3	1	154841792	1.18	C	2.00E-14	G	C	0.3911	0.1801	0.0308	0.3042	0.2025	0.22174	C	ANC	CVD	59133
rs671	21971053	Takeuchi F	Coronary heart disease	cardiovascular	"806 Japanese ancestry cases, 1,337 Japanese ancestry controls"	EAS	12q24.12	12	111803962	1.43	A	2.00E-34	G	A	0.0015	0.0029	0.1736	0	0	0.0356	G	DER	CVD	2143
rs671	22286173	Low SK	Intracranial aneurysm	cardiovascular	"1,383 Japanese ancestry cases, 5,484 Japanese ancestry controls"	EAS	12q24.12	12	111803962	1.24	G	3.00E-06	G	A	0.9985	0.9971	0.8264	1	1	0.9644	G	ANC	CVD	6867
rs6725887	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	2q33.2	2	202881162	1.14	C	1.00E-09	T	C	0.0174	0.0735	0.0159	0.1302	0.0143	0.05026	C	ANC	CVD	86995
rs6725887	19198609	Kathiresan S	Myocardial infarction (early onset)	cardiovascular	"2,967 European ancestry cases, 3,075 European ancestry controls"	EUR	2q33.2	2	202881162	1.17	C	1.00E-08	T	C	0.0174	0.0735	0.0159	0.1302	0.0143	0.05026	C	ANC	CVD	6042
rs6764623	23650146	Tang W	Venous thromboembolism	cardiovascular	"1,618 European ancestry cases, 42,881 European ancestry controls"	EUR	3p26.3	3	1004354	1.18	C	2.00E-06	A	C	0.3775	0.2464	0.4921	0.2545	0.318	0.3377	A	DER	CVD	44499
rs6817105	22544366	Ellinor PT	Atrial fibrillation	cardiovascular	"6,707 European ancestry cases, 52,426 European ancestry controls"	EUR	4q25	4	110784612	1.64	C	2.00E-74	T	C	0.2511	0.2839	0.4524	0.1551	0.136	0.2557	C	ANC	CVD	59133
rs6838440	21799462	Srinivasan Y	Epirubicin-induced leukopenia	cardiovascular	"67 Japanese ancestry cases, 203 Japanese ancestry controls"	EAS	4q25	4	112406922	2.1	C	3.00E-06	C	T	0.4818	0.6585	0.6389	0.6789	0.7342	0.63846	C	ANC	CVD	270
rs6842241	22286173	Low SK	Intracranial aneurysm	cardiovascular	"1,383 Japanese ancestry cases, 5,484 Japanese ancestry controls"	EAS	4q31.22	4	147479667	1.249	C	1.00E-08	C	A	0.5514	0.8271	0.7728	0.8539	0.7495	0.75094	A	DER	CVD	6867
rs6843082	20173747	Ellinor PT	Atrial fibrillation	cardiovascular	"1,335 European ancestry cases, 12,844 European ancestry controls"	EUR	4q25	4	110796911	2.03	G	3.00E-28	G	A	0.3116	0.4265	0.7133	0.2535	0.3282	0.40662	G	ANC	CVD	14179
rs6843082	23041239	Traylor M	Stroke (ischemic)	cardiovascular	"12,389 European ancestry cases, 62,004 European ancestry controls"	EUR	4q25	4	110796911	1.36	G	3.00E-16	G	A	0.3116	0.4265	0.7133	0.2535	0.3282	0.40662	G	ANC	CVD	74393
rs687621	23650146	Tang W	Venous thromboembolism	cardiovascular	"1,618 European ancestry cases, 42,881 European ancestry controls"	EUR	9q34.2	9	133261662	1.55	G	2.00E-52	A	G	0.4516	0.2305	0.3909	0.3708	0.3926	0.36728	G	ANC	CVD	44499
rs6922269	17634449	Samani NJ	Coronary heart disease	cardiovascular	"1,926 European ancestry cases, 2,938 European ancestry controls"	EUR	6q25.1	6	150931849	1.23	A	3.00E-08	G	A	0.6104	0.3256	0.0337	0.2654	0.2883	0.30468	A	ANC	CVD	4864
rs700651	18997786	Bilguvar K	Intracranial aneurysm	cardiovascular	"1,580 European ancestry cases, 6,276 European ancestry controls"	EUR	2q33.1	2	197766990	1.24	G	4.00E-08	G	A	0.0552	0.3804	0.5069	0.2674	0.3558	0.31314	G	ANC	CVD	7856
rs7025486	20622881	Gretarsdottir S	Abdominal aortic aneurysm	cardiovascular	"1,292 European ancestry cases, 30,503 European ancestry controls"	EUR	9q33.2	9	121660124	1.21	A	5.00E-10	G	A	0.326	0.2277	0.2837	0.2177	0.3436	0.27974	G	DER	CVD	31795
rs7136259	22751097	Lu X	Coronary heart disease	cardiovascular	"1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls"	EAS	12q21.33	12	89687411	1.11	T	6.00E-10	T	C	0.5189	0.3112	0.3552	0.3956	0.4223	0.40064	T	ANC	CVD	6534
rs7140285	25101718	Lee JH	Pulmonary artery enlargement in chronic obstructive pulmonary disease	cardiovascular	"1,006 European ancestry cases, 260 African American cases, 3,281 European ancestry controls, 494 African American controls"	MIX	14q31.3	14	87996644	1.55	T	4.00E-08	C	T	0.1445	0.0519	0	0.0865	0.0521	0.067	C	DER	CVD	5041
rs7164569	23650146	Tang W	Venous thromboembolism	cardiovascular	"1,618 European ancestry cases, 42,881 European ancestry controls"	EUR	15q13.3	15	31501727	1.15	A	3.00E-06	A	G	0.4939	0.6571	0.7788	0.661	0.8098	0.68012	A	ANC	CVD	44499
rs7164883	22544366	Ellinor PT	Atrial fibrillation	cardiovascular	"6,707 European ancestry cases, 52,426 European ancestry controls"	EUR	15q24.1	15	73359833	1.19	G	3.00E-17	A	G	0.3321	0.1671	0.1101	0.16	0.0808	0.17002	A	DER	CVD	59133
rs7181486	25101718	Lee JH	Pulmonary artery enlargement in chronic obstructive pulmonary disease	cardiovascular	"1,006 European ancestry cases, 260 African American cases, 3,281 European ancestry controls, 494 African American controls"	MIX	15q25.1	15	78449276	1.32	C	2.00E-08	T	C	0.2095	0.2622	0.1389	0.3777	0.2137	0.2404	T	DER	CVD	5041
rs73201717	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	8p22	8	16825237	2.08	T	8.00E-06	A	T	0.0113	0.0994	0.0109	0.171	0.0808	0.07468	A	DER	CVD	1357
rs7428297	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	3q21.3	3	127359497	2.0602	T	8.00E-06	C	T	0.0038	0.0807	0	0.1511	0.09	0.06512	C	DER	CVD	1357
rs7646881	23297363	Cordell HJ	Tetralogy of Fallot	cardiovascular	"835 European ancestry cases, 5,159 European ancestry controls"	EUR	3q25.32	3	158735490	1.391	A	2.00E-06	C	A	0.3041	0.134	0.0208	0.1938	0.2423	0.179	C	DER	CVD	5994
rs7651039	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	3p25.1	3	15606497	1.06	C	2.00E-06	T	C	0.8994	0.6254	0.6796	0.5239	0.5072	0.6471	C	ANC	CVD	86995
rs7659024	21980494	Germain M	Venous thromboembolism	cardiovascular	"1,542 European ancestry cases, 1,110 European ancestry controls"	EUR	4q31.3	4	154599778	1.53	A	2.00E-13	G	A	0.3449	0.2118	0.4375	0.2197	0.2423	0.29124	G	DER	CVD	2652
rs7801190	21347282	Lettre G	Hypertension	cardiovascular	"4,069 African American cases, 3,848 African American controls"	AFR	7q22.1	7	100860471	1.31	C	3.00E-08	C	G	0.7496	0.9366	0.998	0.9463	0.956	0.9173	C	ANC	CVD	7917
rs7808424	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	7q31.2	7	117427768	1.1	G	1.00E-06	T	G	0.0764	0.2478	0.4058	0.0775	0.3599	0.23348	T	DER	CVD	86995
rs7865618	21606135	Wild PS	Coronary heart disease	cardiovascular	"2,078 European ancestry cases, 2,953 European ancestry controls"	EUR	9p21.3	9	22031006	1.18	A	2.00E-27	G	A	0.9856	0.8084	0.9077	0.5746	0.7249	0.80024	A	ANC	CVD	5031
rs7982677	23297363	Cordell HJ	Tetralogy of Fallot	cardiovascular	"835 European ancestry cases, 5,159 European ancestry controls"	EUR	13q31.3	13	92336070	1.288	A	3.00E-09	C	A	0.357	0.2363	0.2996	0.2744	0.4479	0.32304	C	DER	CVD	5994
rs8055236	17554300	WTCCC	Coronary heart disease	cardiovascular	"1,926 European ancestry cases, 2,938 European ancestry controls"	EUR	16q23.3	16	83178793	1.91	G	6.00E-06	G	T	0.4228	0.8761	0.869	0.8181	0.8487	0.76694	T	DER	CVD	4864
rs870142	23708191	Cordell HJ	Congenital heart disease	cardiovascular	"1,479 European ancestry congenital heart disease cases, 340 European ancestry ostium secundum atrial septal defect cases, 5,159 European ancestry controls"	EUR	4p16.2	4	4646320	1.456	T	3.00E-10	C	T	0.0477	0.2017	0.3224	0.2356	0.2618	0.21384	C	DER	CVD	6978
rs879324	23041239	Traylor M	Stroke (ischemic)	cardiovascular	"12,389 European ancestry cases, 62,004 European ancestry controls"	EUR	16q22.3	16	73034779	1.25	A	2.00E-08	G	A	0.1498	0.1643	0.3343	0.1839	0.2352	0.2135	G	DER	CVD	74393
rs886126	23364394	Lee JY	Coronary heart disease	cardiovascular	"2,123 Korean ancestry cases, 3,591 Korean ancestry controls"	EAS	12q24.11	12	111241410	1.14	T	1.00E-06	C	T	0.6528	0.2406	0.6409	0.2356	0.4847	0.45092	T	ANC	CVD	5714
rs9268402	22751097	Lu X	Coronary heart disease	cardiovascular	"1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls"	EAS	6p21.32	6	32373576	1.16	G	3.00E-15	G	A	0.5885	0.4885	0.6012	0.496	0.4284	0.52052	A	DER	CVD	6534
rs9298506	20364137	Yasuno K	Intracranial aneurysm	cardiovascular	"2,780 European ancestry cases, 12,515 European ancestry controls"	EUR	8q11.23	8	54524964	1.28	A	1.00E-12	A	G	0.8306	0.8602	0.7917	0.828	0.7689	0.81588	A	ANC	CVD	15295
rs9315204	20364137	Yasuno K	Intracranial aneurysm	cardiovascular	"2,780 European ancestry cases, 12,515 European ancestry controls"	EUR	13q13.1	13	33119700	1.2	T	3.00E-09	C	T	0.0953	0.3329	0.2123	0.2107	0.3088	0.232	C	DER	CVD	15295
rs9349379	22745674	Hager J	Coronary heart disease	cardiovascular	"1,949 Middle Eastern ancestry individuals"	SAS	6p24.1	6	12903725	1.187	G	6.00E-12	A	G	0.0303	0.3761	0.6855	0.4006	0.5061	0.39972	A	DER	CVD	1949
rs9388451	23872634	Bezzina CR	Brugada syndrome	cardiovascular	"312 European ancestry cases, 1,115 European ancestry controls"	EUR	6q22.31	6	125769231	1.58	C	5.00E-17	T	C	0.118	0.451	0.7232	0.4901	0.3875	0.43396	T	DER	CVD	1427
rs944797	21971053	Takeuchi F	Coronary heart disease	cardiovascular	"806 Japanese ancestry cases, 1,337 Japanese ancestry controls"	EAS	9p21.3	9	22115287	1.25	C	6.00E-16	T	C	0.413	0.5014	0.5218	0.507	0.5204	0.49272	T	DER	CVD	2143
rs9508025	23364394	Lee JY	Coronary heart disease	cardiovascular	"2,123 Korean ancestry cases, 3,591 Korean ancestry controls"	EAS	13q12.3	13	28409926	1.14	C	6.00E-07	C	G	0.7118	0.817	0.497	0.6909	0.681	0.67954	C	ANC	CVD	5714
rs9513373	25187353	Goldstein JI	Clozapine-induced agranulocytosis	cardiovascular	"161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls"	EUR	13q32.2	13	98214742	4.18	C	8.00E-06	T	C	8.00E-04	0.0144	0.002	0.0268	0.0266	0.01412	T	DER	CVD	1357
rs9546711	21347282	Lettre G	Coronary heart disease	cardiovascular	"260 African American cases, 5,053 African American controls"	AFR	13q31.1	13	84480131	1.66	A	2.00E-06	G	A	0.062	0.1614	0.4236	0.2008	0.2894	0.22744	G	DER	CVD	5313
rs964184	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	11q23.3	11	116778201	1.13	G	1.00E-17	G	C	0.2209	0.2767	0.2401	0.162	0.229	0.22574	C	DER	CVD	86995
rs974819	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	Coronary heart disease	cardiovascular	"8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls"	MIX	11q22.3	11	103789839	1.07	T	2.00E-09	T	C	0.534	0.2233	0.5962	0.2793	0.3333	0.39322	T	ANC	CVD	30482
rs9818870	19198612	Erdmann J	Coronary heart disease	cardiovascular	"1,222 European ancestry cases, 1,298 European ancestry controls"	EUR	3q22.3	3	138403280	1.15	T	7.00E-13	C	T	0.1006	0.0692	0.0258	0.1431	0.091	0.08594	T	ANC	CVD	2520
rs991316	19609347	Adeyemo A	Hypertension	cardiovascular	"509 African American cases, 508 African American controls"	AFR	4q23	4	99401288	1.62	T	5.00E-06	T	C	0.4592	0.5202	0.9633	0.4513	0.6595	0.6107	T	ANC	CVD	1017
rs9982601	19198609	Kathiresan S	Myocardial infarction (early onset)	cardiovascular	"2,967 European ancestry cases, 3,075 European ancestry controls"	EUR	21q22.11	21	34226827	1.2	T	6.00E-11	C	T	0.2284	0.1023	0.002	0.1223	0.0542	0.10184	C	DER	CVD	6042
rs9982601	21378990	Schunkert H	Coronary heart disease	cardiovascular	"22,233 European ancestry cases, 64,762 European ancestry controls"	EUR	21q22.11	21	34226827	1.18	T	4.00E-10	C	T	0.2284	0.1023	0.002	0.1223	0.0542	0.10184	C	DER	CVD	86995
rs1495965	20622879	Mizuki N	Behcet's disease	"cardiovascular, allergy_autoimmune_immune"	"611 Japanese ancestry cases, 737 Japanese ancestry controls"	EAS	1p31.3	1	67287825	1.35	C	2.00E-11	C	T	0.4221	0.3545	0.5169	0.4801	0.5368	0.46208	C	ANC	CVD	1348
rs1568657	21326860	Tsai FJ	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"250 Han Chinese ancestry cases, 446 Han Chinese ancestry controls"	EAS	15q25.2	15	83057427	1.409	G	7.00E-06	A	G	0.2345	0.3372	0.5714	0.174	0.1155	0.28652	A	DER	CVD	696
rs1569723	22446961	Lee YC	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls"	EAS	20q13.12	20	46113425	1.415	A	6.00E-09	C	A	0.9758	0.7867	0.5645	0.7425	0.7311	0.76012	C	DER	CVD	1729
rs17482078	23291587	Kirino Y	Behcet's disease	"cardiovascular, allergy_autoimmune_immune"	"435 Turkish uveitis cases, 780 Turkish without uveitis cases, 1,278 Turkish controls"	EUR	5q15	5	96783162	4.56	T	5.00E-11	C	T	0.0537	0.1239	0.0575	0.2237	0.0654	0.10484	C	DER	CVD	2493
rs17531088	19132087	Burgner D	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"107 European ancestry cases, 134 European ancestry controls"	EUR	3q26.31	3	175175985	1.43	T	1.00E-06	C	T	0.0976	0.4035	0.5268	0.4274	0.4213	0.37532	C	DER	CVD	241
rs17667932	22446961	Lee YC	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls"	EAS	8q24.11	8	117537137	2.368	C	5.00E-07	T	C	0.0575	0.0821	0.0377	0.0726	0.1227	0.07452	T	DER	CVD	1729
rs17810546	23291587	Kirino Y	Behcet's disease	"cardiovascular, allergy_autoimmune_immune"	"435 Turkish uveitis cases, 780 Turkish without uveitis cases, 1,278 Turkish controls"	EUR	3q25.33	3	159947262	1.55	A	6.00E-07	A	G	0.9985	0.8991	1	0.9056	0.9673	0.9541	A	ANC	CVD	2493
rs1800871	20622879	Mizuki N	Behcet's disease	"cardiovascular, allergy_autoimmune_immune"	"611 Japanese ancestry cases, 737 Japanese ancestry controls"	EAS	1q32.1	1	206773289	1.45	A	1.00E-14	A	G	0.4357	0.3329	0.6756	0.2396	0.4581	0.42838	G	DER	CVD	1348
rs1801274	22081228	Khor CC	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"405 European ancestry cases, 6,252 European ancestry controls"	EUR	1q23.3	1	161509955	1.32	A	7.00E-11	A	G	0.4743	0.549	0.7222	0.4891	0.5808	0.56308	A	ANC	CVD	6657
rs1949829	23740775	Xie G	Wegener's granulomatosis	"cardiovascular, allergy_autoimmune_immune"	"459 European ancestry cases, 1,503 European ancestry controls"	EUR	7p12.1	7	51470190	1.78	T	4.00E-07	C	T	0.261	0.1585	0.2728	0.0547	0.0951	0.16842	C	DER	CVD	1962
rs2130392	22446962	Onouchi Y	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"428 Japanese ancestry cases, 3,379 Japanese ancestry controls"	EAS	4q35.1	4	184718015	1.42	A	3.00E-08	G	A	0.2799	0.4769	0.2728	0.6938	0.5624	0.45716	G	DER	CVD	3807
rs2233152	22446962	Onouchi Y	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"428 Japanese ancestry cases, 3,379 Japanese ancestry controls"	EAS	19q13.2	19	40775111	1.52	A	4.00E-10	G	A	0.056	0.1354	0.0734	0.1292	0.1851	0.11582	G	DER	CVD	3807
rs2254546	22446962	Onouchi Y	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"428 Japanese ancestry cases, 3,379 Japanese ancestry controls"	EAS	8p23.1	8	11486171	1.85	G	8.00E-21	A	G	0.8699	0.9107	0.7579	0.8429	0.8323	0.84274	G	ANC	CVD	3807
rs2617170	23291587	Kirino Y	Behcet's disease	"cardiovascular, allergy_autoimmune_immune"	"435 Turkish uveitis cases, 780 Turkish without uveitis cases, 1,278 Turkish controls"	EUR	12p13.2	12	10408358	1.28	T	1.00E-09	T	C	0.5673	0.3329	0.4504	0.337	0.456	0.42872	T	ANC	CVD	2493
rs2736340	22446961	Lee YC	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls"	EAS	8p23.1	8	11486464	1.538	T	9.00E-10	C	T	0.1188	0.487	0.7212	0.2435	0.3507	0.38424	C	DER	CVD	1729
rs2857151	22446962	Onouchi Y	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"428 Japanese ancestry cases, 3,379 Japanese ancestry controls"	EAS	6p21.32	6	32795737	1.47	G	5.00E-11	A	G	0.6921	0.611	0.6935	0.674	0.8241	0.69894	G	ANC	CVD	3807
rs4813003	22446962	Onouchi Y	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"428 Japanese ancestry cases, 3,379 Japanese ancestry controls"	EAS	20q13.12	20	46134645	1.41	C	5.00E-08	C	T	0.789	0.7089	0.5774	0.8579	0.7955	0.74574	C	ANC	CVD	3807
rs4862110	23740775	Xie G	Wegener's granulomatosis	"cardiovascular, allergy_autoimmune_immune"	"459 European ancestry cases, 1,503 European ancestry controls"	EUR	4q35.1	4	182829876	1.44	C	2.00E-06	T	C	0.0961	0.1744	0.3651	0.1869	0.1207	0.18864	C	ANC	CVD	1962
rs4894410	22446961	Lee YC	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls"	EAS	3q23	3	139324394	2.094	G	8.00E-06	C	G	0.8661	0.964	0.9841	0.9543	0.9571	0.94512	G	ANC	CVD	1729
rs527409	21221998	Kim JJ	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"186 Korean ancestry child cases, 600 Korean ancestry controls"	EAS	1p32.2	1	58292243	2.9	T	1.00E-06	T	C	0.0522	0.0432	0.0129	0.0626	0.0204	0.03826	C	DER	CVD	786
rs595018	23740775	Xie G	Wegener's granulomatosis	"cardiovascular, allergy_autoimmune_immune"	"459 European ancestry cases, 1,503 European ancestry controls"	EUR	11q12.2	11	60824803	1.46	T	2.00E-07	T	C	0.1543	0.2522	0.0506	0.1998	0.1155	0.15448	C	DER	CVD	1962
rs7199343	19132087	Burgner D	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"107 European ancestry cases, 134 European ancestry controls"	EUR	16q22.3	16	72975125	1.56	T	2.00E-06	A	T	0.1233	0.3775	0.1111	0.3062	0.2086	0.22534	A	DER	CVD	241
rs7503953	23740775	Xie G	Wegener's granulomatosis	"cardiovascular, allergy_autoimmune_immune"	"459 European ancestry cases, 1,503 European ancestry controls"	EUR	17p13.2	17	6238357	1.5	A	2.00E-07	A	C	0.2005	0.2176	0.2788	0.163	0.3313	0.23824	C	DER	CVD	1962
rs7574070	23291587	Kirino Y	Behcet's disease	"cardiovascular, allergy_autoimmune_immune"	"435 Turkish uveitis cases, 780 Turkish without uveitis cases, 1,278 Turkish controls"	EUR	2q32.3	2	191145762	1.27	A	1.00E-09	A	C	0.7345	0.3415	0.6121	0.3419	0.3139	0.46878	A	ANC	CVD	2493
rs7604693	21221998	Kim JJ	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"186 Korean ancestry child cases, 600 Korean ancestry controls"	EAS	2p14	2	64122068	2.7	C	2.00E-06	C	A	0.0083	0.1931	0.0427	0.2515	0.1708	0.13328	A	DER	CVD	786
rs7616215	23291587	Kirino Y	Behcet's disease	"cardiovascular, allergy_autoimmune_immune"	"435 Turkish uveitis cases, 780 Turkish without uveitis cases, 1,278 Turkish controls"	EUR	3p21.31	3	46164194	1.39	C	4.00E-13	C	T	0.4773	0.2637	0.127	0.3569	0.4509	0.33516	C	ANC	CVD	2493
rs7656244	22446961	Lee YC	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls"	EAS	4q13.1	4	64304697	1.394	A	3.00E-07	C	A	0.2269	0.2522	0.2937	0.2177	0.2546	0.24902	C	DER	CVD	1729
rs897200	23001997	Hou S	Behcet's disease	"cardiovascular, allergy_autoimmune_immune"	"147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls"	EAS	"2q32.3, 2q32.3[rs897200]; 2q32.3[rs7572482]"	2	191153045	1.45	T	6.00E-09	T	C	0.7345	0.3444	0.6141	0.3569	0.319	0.47378	T	ANC	CVD	1098
rs9290065	22446961	Lee YC	Kawasaki disease	"cardiovascular, allergy_autoimmune_immune"	"622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls"	EAS	3q26.1	3	161059176	2.119	C	9.00E-06	C	T	0.0477	0.2824	0.0298	0.503	0.2198	0.21654	T	DER	CVD	1729
rs10273639	23143602	Whitcomb DC	Pancreatitis	gastrointestinal_or_liver_disease	"676 European ancestry cases, 4,507 European ancestry controls"	EUR	7q34	7	142749077	1.36	C	2.00E-14	T	C	0.3949	0.5288	0.2202	0.5855	0.2791	0.4017	T	DER	GI_liver	5183
rs1032757	20208534	Rothenberg ME	Eosinophilic esophagitis (pediatric)	gastrointestinal_or_liver_disease	"181 European ancestry cases, 1,974 European ancestry controls"	EUR	5q14.2	5	82643499	1.96	A	2.00E-06	G	A	0.3843	0.0965	0.2629	0.0606	0.0736	0.17558	G	DER	GI_liver	2155
rs10419226	24121790	Levine DM	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	gastrointestinal_or_liver_disease	"3,928 European ancestry cases, 3,207 European ancestry controls"	EUR	19p13.11	19	18692362	1.18	T	4.00E-10	T	G	0.0461	0.3718	0.3264	0.4463	0.4172	0.32156	G	DER	GI_liver	7135
rs10419226	24121790	Levine DM	Barrett's esophagus	gastrointestinal_or_liver_disease	"2,416 European ancestry cases, 3,206 European ancestry controls"	EUR	19p13.11	19	18692362	1.19	T	6.00E-08	T	G	0.0461	0.3718	0.3264	0.4463	0.4172	0.32156	G	DER	GI_liver	5622
rs1042058	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	10p11.23	10	30439172	1.075	C	6.00E-11	T	C	0.0976	0.5187	0.3492	0.6044	0.3252	0.37902	T	DER	GI_liver	34366
rs10495903	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	2p21	2	43579779	1.086	T	8.00E-12	C	T	0.1762	0.0793	0.0069	0.1064	0.1544	0.10464	C	DER	GI_liver	34366
rs10521318	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	16q24.1	16	85977731	1.155	C	1.00E-09	C	T	0.9955	0.9683	0.9306	0.9165	0.9458	0.95134	C	ANC	GI_liver	34366
rs10758669	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	9p24.1	9	4981602	1.174	C	8.00E-45	C	A	0.1362	0.4251	0.3651	0.3529	0.3937	0.3346	A	DER	GI_liver	34366
rs10761659	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	10q21.2	10	62685804	1.166	G	6.00E-46	A	G	0.0787	0.6124	0.7361	0.503	0.638	0.51364	A	DER	GI_liver	34366
rs10781499	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	9q34.3	9	136371953	1.188	A	4.00E-56	G	A	0.2504	0.572	0.3185	0.3976	0.3937	0.38644	G	DER	GI_liver	34366
rs10825269	24797007	Holliday EG	Irritable bowel syndrome	gastrointestinal_or_liver_disease	"Up to 172 European ancestry cases, 1,398 European ancestry controls"	EUR	10q21.1	10	54195850	1.55	T	5.00E-06	C	T	0.4871	0.2104	0.0863	0.1382	0.2065	0.2257	T	ANC	GI_liver	1570
rs10896794	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	11q12.1	11	58571651	1.08	T	7.00E-10	T	C	0.857	0.7968	0.8165	0.7684	0.7331	0.79436	T	ANC	GI_liver	34366
rs11010067	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	10p11.21	10	35006503	1.115	G	2.00E-25	C	G	0.4251	0.3646	0.3284	0.3618	0.32	0.35998	G	ANC	GI_liver	34366
rs11168249	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	12q13.11	12	47814585	1.054	C	8.00E-09	T	C	0.6528	0.3242	0.0853	0.4672	0.3569	0.37728	C	ANC	GI_liver	34366
rs11206226	22719876	Kawaguchi T	Nonalcoholic fatty liver disease	gastrointestinal_or_liver_disease	"529 Japanese ancestry cases, 932 Japanese ancestry controls"	EAS	1p32.3	1	53854664	1.72	A	5.00E-06	A	G	0.997	0.9654	0.8909	0.9612	0.9888	0.96066	A	ANC	GI_liver	1461
rs11209026	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	"1p31.3, 1p31.3[rs11209003]; 1p31.3[rs11209002]"	1	67240275	2.013	G	8.00E-161	G	A	0.997	0.9481	1	0.9384	0.9877	0.97424	G	ANC	GI_liver	34366
rs11216185	22306654	Feenstra B	Infantile hypertrophic pyloric stenosis	gastrointestinal_or_liver_disease	"1,001 European ancestry cases, 2,401 European ancestry controls"	EUR	11q23.3	11	116912258	1.57	G	1.00E-07	T	G	0.1112	0.0476	0.0804	0.0646	0.089	0.07856	T	DER	GI_liver	3402
rs11230563	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	11q12.2	11	61008737	1.085	C	9.00E-13	C	T	0.388	0.7032	0.8294	0.6421	0.7883	0.6702	C	ANC	GI_liver	34366
rs11564258	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	12q12	12	40398498	1.334	A	6.00E-29	G	A	0.003	0.1556	0.0605	0.0229	0.1043	0.06926	A	ANC	GI_liver	34366
rs11612508	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	12p13.2	12	12504579	1.058	G	1.00E-08	A	G	0.0386	0.3069	0.121	0.2734	0.1472	0.17742	A	DER	GI_liver	34366
rs11712066	23989729	Feenstra B	Infantile hypertrophic pyloric stenosis	gastrointestinal_or_liver_disease	"1,001 European ancestry cases, 2,371 European ancestry controls"	EUR	3q25.1	3	152112520	1.55	A	3.00E-21	A	G	0.9879	0.8775	0.998	0.7883	0.9233	0.915	G	DER	GI_liver	3372
rs11742570	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	5p13.1	5	40410482	1.198	C	2.00E-82	T	C	0.6112	0.4438	0.1419	0.5895	0.4468	0.44664	C	ANC	GI_liver	34366
rs11771429	24121790	Levine DM	Barrett's esophagus	gastrointestinal_or_liver_disease	"2,416 European ancestry cases, 3,206 European ancestry controls"	EUR	7q36.2	7	153574792	1.2195	C	7.00E-06	C	T	0.9887	0.7954	0.6944	0.8221	0.8108	0.82228	C	ANC	GI_liver	5622
rs11771429	24121790	Levine DM	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	gastrointestinal_or_liver_disease	"3,928 European ancestry cases, 3,207 European ancestry controls"	EUR	7q36.2	7	153574792	1.1905	C	8.00E-06	C	T	0.9887	0.7954	0.6944	0.8221	0.8108	0.82228	C	ANC	GI_liver	7135
rs11789015	24121790	Levine DM	Barrett's esophagus	gastrointestinal_or_liver_disease	"2,416 European ancestry cases, 3,206 European ancestry controls"	EUR	9q22.32	9	93953746	1.1765	A	5.00E-06	A	G	0.646	0.6628	0.9067	0.7137	0.8129	0.74842	A	ANC	GI_liver	5622
rs11789015	24121790	Levine DM	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	gastrointestinal_or_liver_disease	"3,928 European ancestry cases, 3,207 European ancestry controls"	EUR	9q22.32	9	93953746	1.2048	A	1.00E-09	A	G	0.646	0.6628	0.9067	0.7137	0.8129	0.74842	A	ANC	GI_liver	7135
rs118086209	25017104	Kottyan LC	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"657 European ancestry cases, 9,296 European ancestry controls"	EUR	11q14.2	11	86393453	2.19	G	2.00E-07	T	G	0.0015	0.013	0.001	0.0159	0.0072	0.00772	T	DER	GI_liver	9953
rs11819199	25017104	Kottyan LC	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"657 European ancestry cases, 9,296 European ancestry controls"	EUR	10p12.31	10	20576228	1.62	G	3.00E-07	A	G	0.3283	0.0663	0.001	0.0716	0.1145	0.11634	A	DER	GI_liver	9953
rs11864146	23213074	Adams LA	Non-alcoholic fatty liver disease histology (other)	gastrointestinal_or_liver_disease	"126 European ancestry adolescent cases, 802 European ancestry adolescent controls"	EUR	16q23.3	16	84013110	3.14	A	2.00E-06	A	G	0.6097	0.8271	0.9325	0.9095	0.8691	0.82958	A	ANC	GI_liver	928
rs11879191	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	19p13.2	19	10402235	1.136	G	2.00E-18	G	A	0.8676	0.8501	0.499	0.832	0.7607	0.76188	G	ANC	GI_liver	34366
rs11988997	23143602	Whitcomb DC	Pancreatitis	gastrointestinal_or_liver_disease	"676 European ancestry cases, 4,507 European ancestry controls"	EUR	8q24.12	8	118753955	1.359	T	6.00E-06	C	T	0.0749	0.0519	0.0665	0.0706	0.0777	0.06832	C	DER	GI_liver	5183
rs11989782	20208534	Rothenberg ME	Eosinophilic esophagitis (pediatric)	gastrointestinal_or_liver_disease	"181 European ancestry cases, 1,974 European ancestry controls"	EUR	8q24.12	8	120682410	1.53	A	7.00E-06	C	A	0.0136	0.1715	0.0635	0.2475	0.089	0.11702	C	DER	GI_liver	2155
rs1208285	22306654	Feenstra B	Infantile hypertrophic pyloric stenosis	gastrointestinal_or_liver_disease	"1,001 European ancestry cases, 2,401 European ancestry controls"	EUR	6q23.2	6	133837662	1.25	C	6.00E-07	T	C	0.0333	0.2219	0.4752	0.3499	0.2894	0.27394	T	DER	GI_liver	3402
rs12103	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	1p36.33	1	1312114	1.099	T	8.00E-13	T	C	0.9077	0.5576	0.9812	0.1879	0.6585	0.65858	T	ANC	GI_liver	34366
rs12199775	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	6q24.2	6	143577757	1.129	A	2.00E-08	A	G	0.9962	0.9654	0.9355	0.9384	0.9325	0.9536	A	ANC	GI_liver	34366
rs1250546	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	10q22.3	10	79272775	1.096	A	3.00E-18	A	G	0.7988	0.6715	0.5714	0.6243	0.5644	0.64608	G	DER	GI_liver	34366
rs12568930	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	1p36.12	1	22375738	1.095	T	1.00E-17	T	C	0.6528	0.8602	0.7679	0.836	0.7873	0.78084	T	ANC	GI_liver	34366
rs12654812	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	5q35.3	5	177367190	1.068	A	2.00E-08	G	A	0.3185	0.33	0.2341	0.3489	0.3885	0.324	G	DER	GI_liver	34366
rs12702514	25248455	Ek WE	Irritable bowel syndrome	gastrointestinal_or_liver_disease	"534 European ancestry cases, 4,932 European ancestry controls"	EUR	7p22.1	7	6476404	1.21	T	5.00E-06	C	T	0.2163	0.3343	0.0704	0.4553	0.1667	0.2486	C	DER	GI_liver	5466
rs12721025	23989729	Feenstra B	Infantile hypertrophic pyloric stenosis	gastrointestinal_or_liver_disease	"1,001 European ancestry cases, 2,371 European ancestry controls"	EUR	11q23.3	11	116835331	1.59	A	2.00E-10	G	A	0.0121	0.0418	0.0516	0.0706	0.1094	0.0571	G	DER	GI_liver	3372
rs12722515	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	10p15.1	10	6039267	1.102	C	4.00E-10	C	A	0.9198	0.9337	0.876	0.8608	0.8476	0.88758	C	ANC	GI_liver	34366
rs12743824	23213074	Adams LA	Non-alcoholic fatty liver disease histology (other)	gastrointestinal_or_liver_disease	"126 European ancestry adolescent cases, 802 European ancestry adolescent controls"	EUR	1p21.2	1	99317401	2.3	C	5.00E-06	C	A	0.5091	0.3991	0.3562	0.5577	0.5368	0.47178	A	DER	GI_liver	928
rs1292053	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	17q23.1	17	59886176	1.076	G	9.00E-13	A	G	0.5204	0.4597	0.5754	0.4175	0.4121	0.47702	G	ANC	GI_liver	34366
rs12942547	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	17q21.2	17	42375526	1.103	A	6.00E-22	A	G	0.5741	0.745	0.6022	0.5855	0.4959	0.60054	G	DER	GI_liver	34366
rs12946510	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	17q12	17	39756124	1.157	T	4.00E-38	C	T	0.1732	0.3415	0.3016	0.4712	0.3149	0.32048	C	DER	GI_liver	34366
rs13278732	20208534	Rothenberg ME	Eosinophilic esophagitis (pediatric)	gastrointestinal_or_liver_disease	"181 European ancestry cases, 1,974 European ancestry controls"	EUR	8q22.2	8	98076353	1.31	T	6.00E-06	C	T	0.2489	0.1729	0.0685	0.2435	0.2229	0.19134	C	DER	GI_liver	2155
rs1363907	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	5q15	5	96917099	1.068	A	6.00E-13	G	A	0.3238	0.3127	0.3442	0.4046	0.3139	0.33984	G	DER	GI_liver	34366
rs1390096	22719876	Kawaguchi T	Nonalcoholic fatty liver disease	gastrointestinal_or_liver_disease	"529 Japanese ancestry cases, 932 Japanese ancestry controls"	EAS	4p15.33	4	11501980	1.44	A	3.00E-06	G	A	0.0469	0.2291	0.4325	0.2604	0.318	0.25738	G	DER	GI_liver	1461
rs1456896	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	7p12.2	7	50264865	1.088	T	7.00E-15	C	T	0.5681	0.7666	0.4137	0.6869	0.8528	0.65762	T	ANC	GI_liver	34366
rs149864795	25407941	Sleiman PM	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"603 European ancestry cases, 3,637 European ancestry controls"	EUR	2p23.1	2	31179541	2.216	A	5.00E-10	G	A	0.0416	0.0605	0.0188	0.0348	0.0276	0.03666	G	DER	GI_liver	4240
rs1517352	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	"2q32.2, 2q32.3"	2	191066738	1.077	C	3.00E-11	A	C	0.0424	0.4337	0.5188	0.6004	0.6196	0.44298	A	DER	GI_liver	34366
rs1569723	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	20q13.12	20	46113425	1.091	C	1.00E-13	C	A	0.0242	0.2133	0.4355	0.2575	0.2689	0.23988	C	ANC	GI_liver	34366
rs167769	25407941	Sleiman PM	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"603 European ancestry cases, 3,637 European ancestry controls"	EUR	12q13.3	12	57109992	1.351	T	2.00E-07	C	T	0.1104	0.4063	0.253	0.335	0.3344	0.28782	C	DER	GI_liver	4240
rs167769	20208534	Rothenberg ME	Eosinophilic esophagitis (pediatric)	gastrointestinal_or_liver_disease	"181 European ancestry cases, 1,974 European ancestry controls"	EUR	12q13.3	12	57109992	1.36	T	2.00E-06	C	T	0.1104	0.4063	0.253	0.335	0.3344	0.28782	C	DER	GI_liver	2155
rs16879552	19196962	Garcia-Barcelo MM	Hirschsprung disease	gastrointestinal_or_liver_disease	"181 Chinese ancestry cases, 346 Chinese ancestry controls"	EAS	8p12	8	32553698	1.68	C	2.00E-08	C	T	0.7632	0.9107	0.4375	0.9662	0.8998	0.79548	C	ANC	GI_liver	527
rs17004598	25017104	Kottyan LC	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"657 European ancestry cases, 9,296 European ancestry controls"	EUR	21q22.3	21	43658675	2.57	G	1.00E-07	T	G	0.0908	0.0994	0.0933	0.008	0.0961	0.07752	T	DER	GI_liver	9953
rs17085007	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	13q12.13	13	26957130	1.106	C	3.00E-19	T	C	0.0673	0.183	0.251	0.1879	0.2669	0.19122	T	DER	GI_liver	34366
rs17095355	20460270	Garcia-Barcelo MM	Biliary atresia	gastrointestinal_or_liver_disease	"281 Chinese ancestry cases, 481 Chinese ancestry controls"	EAS	10q25.1	10	109975992	1.77	T	7.00E-09	C	T	0.3548	0.1182	0.4177	0.165	0.5082	0.31278	T	ANC	GI_liver	762
rs17119	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	6p23	6	14719265	1.071	A	3.00E-11	G	A	0.5537	0.6801	0.9196	0.7624	0.7556	0.73428	G	DER	GI_liver	34366
rs17293632	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	15q22.33	15	67150258	1.067	T	6.00E-16	C	T	0.0242	0.1239	0.0278	0.2147	0.138	0.10572	C	DER	GI_liver	34366
rs1734907	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	7q22.1	7	100717894	1.114	A	2.00E-13	A	G	0.1717	0.1052	0.0774	0.171	0.2168	0.14842	G	DER	GI_liver	34366
rs17694108	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	19q13.11	19	33240645	1.1	A	6.00E-15	G	A	0.0212	0.2637	0.2857	0.2863	0.3855	0.24848	G	DER	GI_liver	34366
rs1801274	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	1q23.3	1	161509955	1.124	A	2.00E-38	A	G	0.4743	0.549	0.7222	0.4891	0.5808	0.56308	A	ANC	GI_liver	34366
rs1819333	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	6q27	6	166960059	1.081	T	7.00E-21	T	G	0.2247	0.3833	0.373	0.506	0.2873	0.35486	T	ANC	GI_liver	34366
rs1847472	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	6q15	6	90263440	1.06	C	2.00E-10	C	A	0.9107	0.7089	0.9573	0.6332	0.7628	0.79458	C	ANC	GI_liver	34366
rs1893217	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	18p11.21	18	12809341	1.171	G	3.00E-26	A	G	0.0356	0.0605	0.1925	0.1412	0.1779	0.12154	A	DER	GI_liver	34366
rs1939875	20208534	Rothenberg ME	Eosinophilic esophagitis (pediatric)	gastrointestinal_or_liver_disease	"181 European ancestry cases, 1,974 European ancestry controls"	EUR	11q21	11	95689703	1.54	A	3.00E-06	A	G	0.2201	0.2522	0.2312	0.2783	0.319	0.26016	G	DER	GI_liver	2155
rs194749	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	14q24.1	14	68807188	1.075	C	3.00E-10	T	C	0.2201	0.2608	0.1815	0.2326	0.3241	0.24382	C	ANC	GI_liver	34366
rs1991866	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	8q24.21	8	129611859	1.054	G	2.00E-09	G	C	0.4728	0.3977	0.5079	0.4225	0.3149	0.42316	C	DER	GI_liver	34366
rs2000260	25017104	Kottyan LC	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"657 European ancestry cases, 9,296 European ancestry controls"	EUR	1p13.3	1	108130783	1.32	A	7.00E-07	A	G	0.8207	0.5303	0.4802	0.5775	0.5644	0.59462	G	DER	GI_liver	9953
rs2051090	23535911	Kitamoto T	Non-alcoholic fatty liver disease	gastrointestinal_or_liver_disease	"392 Japanese ancestry cases, 934 Japanese ancestry controls"	EAS	13q13.3	13	35880056	1.19	G	7.00E-06	G	A	0.5091	0.6398	0.6855	0.5835	0.6738	0.61834	A	DER	GI_liver	1326
rs2111485	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	2q24.2	2	162254026	1.066	A	2.00E-08	A	G	0.8238	0.6052	0.8313	0.3976	0.5746	0.6465	A	ANC	GI_liver	34366
rs2120991	20460270	Garcia-Barcelo MM	Biliary atresia	gastrointestinal_or_liver_disease	"281 Chinese ancestry cases, 481 Chinese ancestry controls"	EAS	12q13.13	12	53876444	2.14	A	9.00E-06	C	A	0.0461	0.2075	0.1696	0.3638	0.3272	0.22284	C	DER	GI_liver	762
rs2155219	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	11q13.5	11	76588150	1.151	T	4.00E-36	G	T	0.5923	0.5043	0.5268	0.4911	0.5174	0.52638	T	ANC	GI_liver	34366
rs2155219	25017104	Kottyan LC	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"657 European ancestry cases, 9,296 European ancestry controls"	EUR	11q13.5	11	76588150	1.37	T	4.00E-07	G	T	0.5923	0.5043	0.5268	0.4911	0.5174	0.52638	T	ANC	GI_liver	9953
rs2178146	24121790	Levine DM	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	gastrointestinal_or_liver_disease	"3,928 European ancestry cases, 3,207 European ancestry controls"	EUR	16q24.1	16	86430089	1.1364	T	1.00E-06	T	C	0.9917	0.6095	0.7758	0.6034	0.7198	0.74004	T	ANC	GI_liver	7135
rs2188962	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	5q31.1	5	132435113	1.158	T	1.00E-52	C	T	0.0356	0.245	0.001	0.3867	0.0869	0.15104	C	DER	GI_liver	34366
rs222054	23213074	Adams LA	Non-alcoholic fatty liver disease histology (other)	gastrointestinal_or_liver_disease	"126 European ancestry adolescent cases, 802 European ancestry adolescent controls"	EUR	4q13.3	4	71738582	2.54	C	1.00E-06	C	G	0.823	0.719	0.7143	0.67	0.5798	0.70122	C	ANC	GI_liver	928
rs2224865	20208534	Rothenberg ME	Eosinophilic esophagitis (pediatric)	gastrointestinal_or_liver_disease	"181 European ancestry cases, 1,974 European ancestry controls"	EUR	10q23.1	10	83663098	1.44	G	9.00E-06	G	T	0.4251	0.1844	0.4296	0.3439	0.3793	0.35246	T	DER	GI_liver	2155
rs2227564	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	10q22.2	10	73913343	1.082	C	7.00E-10	T	C	0.9902	0.7536	0.6349	0.7922	0.6278	0.75974	C	ANC	GI_liver	34366
rs2231884	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	11q13.1	11	65889093	1.083	T	3.00E-10	C	T	0.1528	0.1614	0.3135	0.164	0.0961	0.17756	C	DER	GI_liver	34366
rs2294008	22387998	Tanikawa C	Duodenal ulcer	gastrointestinal_or_liver_disease	"1,043 Japanese ancestry cases, 21,694 Japanese ancestry controls"	EAS	8q24.3	8	142680513	1.41	C	2.00E-33	C	T	0.6324	0.4957	0.6577	0.5527	0.593	0.5863	T	DER	GI_liver	22737
rs2315008	18758464	Kugathasan S	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"1,011 European ancestry cases, 4,250 European ancestry controls"	EUR	20q13.33	20	63712604	1.36	G	9.00E-15	T	G	0.7383	0.6772	0.3651	0.7117	0.7423	0.64692	T	DER	GI_liver	5261
rs2382817	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	2q35	2	218286495	1.073	A	4.00E-12	A	C	0.3457	0.4092	0.379	0.3708	0.3681	0.37456	A	ANC	GI_liver	34366
rs2472649	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	4q13.3	4	73991991	1.095	G	3.00E-08	A	G	0.1044	0.7305	0.8244	0.8241	0.7464	0.64596	A	DER	GI_liver	34366
rs2488389	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	1q31.3	1	197662011	1.115	A	8.00E-13	G	A	0.2882	0.2003	0.2222	0.1958	0.2331	0.22792	G	DER	GI_liver	34366
rs252716	25407941	Sleiman PM	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"603 European ancestry cases, 3,637 European ancestry controls"	EUR	5q22.1	5	111089365	1.516	C	4.00E-14	G	C	0.23	0.353	0.5774	0.4394	0.2628	0.37252	G	DER	GI_liver	4240
rs259964	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	20q13.32	20	59249254	1.085	A	1.00E-12	A	G	0.6876	0.3948	0.0853	0.4374	0.2014	0.3613	A	ANC	GI_liver	34366
rs2651244	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	1p31.1	1	70529879	1.015	G	2.00E-08	G	A	0.9115	0.781	0.8601	0.5974	0.7045	0.7709	G	ANC	GI_liver	34366
rs26528	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	16p11.2	16	28506388	1.099	C	1.00E-21	T	C	0.3495	0.5591	0.381	0.3966	0.2843	0.3941	C	ANC	GI_liver	34366
rs2687201	24121790	Levine DM	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	gastrointestinal_or_liver_disease	"3,928 European ancestry cases, 3,207 European ancestry controls"	EUR	3p13	3	70879779	1.18	A	5.00E-09	A	C	0.7519	0.2824	0.4921	0.3171	0.2924	0.42718	A	ANC	GI_liver	7135
rs2687201	24121790	Levine DM	Barrett's esophagus	gastrointestinal_or_liver_disease	"2,416 European ancestry cases, 3,206 European ancestry controls"	EUR	3p13	3	70879779	1.18	A	2.00E-06	A	C	0.7519	0.2824	0.4921	0.3171	0.2924	0.42718	A	ANC	GI_liver	5622
rs2790216	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	10q21.1	10	58238165	1.066	G	8.00E-09	G	A	0.3064	0.7507	0.5685	0.7903	0.7342	0.63002	G	ANC	GI_liver	34366
rs2823286	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	21q21.1	21	15445619	1.157	G	9.00E-30	G	A	0.7284	0.7248	0.8532	0.7107	0.8098	0.76538	A	DER	GI_liver	34366
rs2836878	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	21q22.2	21	39093608	1.18	G	5.00E-48	G	A	0.8812	0.7003	0.8254	0.7425	0.7464	0.77916	A	DER	GI_liver	34366
rs2898261	25017104	Kottyan LC	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"657 European ancestry cases, 9,296 European ancestry controls"	EUR	8p23.1	8	11101029	1.35	G	5.00E-08	G	T	0.202	0.7161	0.9018	0.5895	0.5859	0.59906	T	DER	GI_liver	9953
rs2927438	24121790	Levine DM	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	gastrointestinal_or_liver_disease	"3,928 European ancestry cases, 3,207 European ancestry controls"	EUR	19q13.32	19	44738850	1.1628	G	2.00E-06	A	G	0.8669	0.8242	0.7778	0.7704	0.818	0.81146	G	ANC	GI_liver	7135
rs2930047	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	5p15.2	5	10695414	1.065	C	1.00E-08	T	C	0.7648	0.4813	0.751	0.4026	0.6554	0.61102	C	ANC	GI_liver	34366
rs29784	23989729	Feenstra B	Infantile hypertrophic pyloric stenosis	gastrointestinal_or_liver_disease	"1,001 European ancestry cases, 2,371 European ancestry controls"	EUR	5q35.1	5	173168305	1.36	T	8.00E-18	C	T	0.2731	0.3487	0.1627	0.5109	0.1973	0.29854	C	DER	GI_liver	3372
rs2995271	23143602	Whitcomb DC	Pancreatitis	gastrointestinal_or_liver_disease	"676 European ancestry cases, 4,507 European ancestry controls"	EUR	10p11.23	10	30230903	1.27	T	8.00E-07	C	T	0.326	0.7032	0.3085	0.7734	0.5613	0.53448	C	DER	GI_liver	5183
rs3024505	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	1q32.1	1	206766559	1.208	A	7.00E-42	G	A	0.0318	0.0821	0.0278	0.168	0.1391	0.08976	G	DER	GI_liver	34366
rs3091316	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	17q12	17	34266955	1.122	G	1.00E-26	G	A	0.7655	0.5187	0.4534	0.6829	0.6759	0.61928	G	ANC	GI_liver	34366
rs3129860	23321320	Urabe Y	Hepatitis C induced liver cirrhosis	gastrointestinal_or_liver_disease	"682 Japanese ancestry cases, 1,045 Japanese ancestry controls"	EAS	6p21.32	6	32433302	1.36	A	1.00E-09	A	G	0.028	0.0634	0.12	0.1233	0.1288	0.0927	G	DER	GI_liver	1727
rs3135363	23321320	Urabe Y	Hepatitis C induced liver cirrhosis	gastrointestinal_or_liver_disease	"682 Japanese ancestry cases, 1,045 Japanese ancestry controls"	EAS	"6p21.32, 6p21.32[rs2395148]; 6p21.32[rs3135363]"	6	32421871	1.37	G	1.00E-10	A	G	0.1505	0.255	0.2956	0.2406	0.1759	0.22352	G	ANC	GI_liver	1727
rs3197999	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	3p21.31	3	49684099	1.18	A	1.00E-47	G	A	0.2179	0.1686	0.0565	0.3131	0.1881	0.18884	G	DER	GI_liver	34366
rs35675666	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	1p36.23	1	7961913	1.112	G	1.00E-15	G	T	0.7504	0.8876	0.9385	0.84	0.8865	0.8606	G	ANC	GI_liver	34366
rs3749171	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	2q37.3	2	240630275	1.135	T	3.00E-21	C	T	0.2209	0.1268	0.0863	0.173	0.1166	0.14472	C	DER	GI_liver	34366
rs3784262	24121790	Levine DM	Barrett's esophagus	gastrointestinal_or_liver_disease	"2,416 European ancestry cases, 3,206 European ancestry controls"	EUR	15q21.3	15	57960908	1.1765	T	4.00E-07	T	C	0.7489	0.7291	0.7897	0.5487	0.8487	0.73302	T	ANC	GI_liver	5622
rs3784262	24121790	Levine DM	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	gastrointestinal_or_liver_disease	"3,928 European ancestry cases, 3,207 European ancestry controls"	EUR	15q21.3	15	57960908	1.1364	T	7.00E-07	T	C	0.7489	0.7291	0.7897	0.5487	0.8487	0.73302	T	ANC	GI_liver	7135
rs3806933	25017104	Kottyan LC	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"657 European ancestry cases, 9,296 European ancestry controls"	EUR	5q22.1	5	111071044	1.37	C	2.00E-08	C	T	0.7428	0.5187	0.6498	0.5457	0.3344	0.55828	T	DER	GI_liver	9953
rs3815700	25407941	Sleiman PM	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"603 European ancestry cases, 3,637 European ancestry controls"	EUR	19q13.11	19	32602346	1.618	C	2.00E-09	T	C	0.3525	0.1441	0.3611	0.1153	0.2628	0.24716	C	ANC	GI_liver	4240
rs3817963	23321320	Urabe Y	Hepatitis C induced liver cirrhosis	gastrointestinal_or_liver_disease	"682 Japanese ancestry cases, 1,045 Japanese ancestry controls"	EAS	6p21.32	6	32400310	1.3	T	1.00E-08	T	C	0.8321	0.6744	0.7688	0.7237	0.6667	0.73314	T	ANC	GI_liver	1727
rs3851228	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	6q21	6	111526988	1.153	T	1.00E-13	A	T	0.1921	0.085	0	0.0656	0.0429	0.07712	A	DER	GI_liver	34366
rs38904	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	7q31.2	7	117252792	1.054	T	1.00E-08	T	C	0.3147	0.5331	0.6855	0.5577	0.5348	0.52516	C	DER	GI_liver	34366
rs4246905	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	9q32	9	114790969	1.142	C	3.00E-32	T	C	0.9576	0.7882	0.6528	0.7028	0.7791	0.7761	G	DER	GI_liver	34366
rs4256159	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	3p24.3	3	18725912	1.107	T	9.00E-15	C	T	0.0514	0.1037	0.1637	0.1362	0.0941	0.10982	C	DER	GI_liver	34366
rs4409764	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	10q24.2	10	99524480	1.182	T	1.00E-54	T	G	0.5794	0.415	0.4425	0.492	0.3671	0.4592	T	ANC	GI_liver	34366
rs4656958	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	1q23.3	1	160887174	1.061	G	7.00E-09	A	G	0.5431	0.7248	0.7391	0.6839	0.7045	0.67908	G	ANC	GI_liver	34366
rs4663866	25248455	Ek WE	Irritable bowel syndrome	gastrointestinal_or_liver_disease	"534 European ancestry cases, 4,932 European ancestry controls"	EUR	2q37.3	2	238242174	1.45	C	5.00E-06	A	C	0.1036	0.0519	0.0575	0.0974	0.1268	0.08744	A	DER	GI_liver	5466
rs4743820	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	"9q22.2, 9q22.31"	9	91166134	1.056	T	4.00E-09	C	T	0.3381	0.7392	0.6687	0.7177	0.6697	0.62668	C	DER	GI_liver	34366
rs4800353	24121790	Levine DM	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	gastrointestinal_or_liver_disease	"3,928 European ancestry cases, 3,207 European ancestry controls"	EUR	18q11.2	18	22074176	1.22	A	3.00E-07	A	G	0.3321	0.6383	0.753	0.8628	0.7515	0.66754	A	ANC	GI_liver	7135
rs4845604	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	1q21.3	1	151829204	1.144	G	4.00E-16	G	A	0.708	0.8689	0.9643	0.8648	0.9008	0.86136	G	ANC	GI_liver	34366
rs4899554	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	14q24.3	14	75234518	1.083	C	3.00E-08	C	T	0.9705	0.8429	0.7897	0.829	0.8783	0.86208	C	ANC	GI_liver	34366
rs4911259	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	20q11.21	20	32788476	1.075	G	1.00E-09	T	G	0.4387	0.5879	0.9177	0.3499	0.6258	0.584	T	DER	GI_liver	34366
rs505922	22387998	Tanikawa C	Duodenal ulcer	gastrointestinal_or_liver_disease	"1,043 Japanese ancestry cases, 21,694 Japanese ancestry controls"	EAS	9q34.2	9	133273813	1.32	T	1.00E-10	T	C	0.6346	0.781	0.619	0.6322	0.6074	0.65484	T	ANC	GI_liver	22737
rs529866	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	16p13.13	16	11279463	1.124	C	2.00E-16	C	T	0.7935	0.9049	0.9563	0.8201	0.8988	0.87472	C	ANC	GI_liver	34366
rs559928	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	11q13.1	11	64382898	1.101	C	4.00E-11	T	C	0.6074	0.8876	0.9048	0.831	0.9315	0.83246	T	DER	GI_liver	34366
rs573872	23989729	Feenstra B	Infantile hypertrophic pyloric stenosis	gastrointestinal_or_liver_disease	"1,001 European ancestry cases, 2,371 European ancestry controls"	EUR	3q25.2	3	153754374	1.37	G	5.00E-14	T	G	0.2231	0.1844	0.1865	0.1948	0.2096	0.19968	G	ANC	GI_liver	3372
rs6062504	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	20q13.33	20	63717555	1.104	G	1.00E-23	A	G	0.7375	0.6772	0.3651	0.7117	0.7423	0.64676	A	DER	GI_liver	34366
rs6142618	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	20q11.21	20	32137845	1.072	G	6.00E-10	A	G	0.9463	0.7233	0.994	0.5477	0.5174	0.74574	G	ANC	GI_liver	34366
rs61894547	25407941	Sleiman PM	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"603 European ancestry cases, 3,637 European ancestry controls"	EUR	11q13.5	11	76537586	2.439	T	4.00E-11	C	T	0.0023	0.0187	0	0.0497	0.002	0.01454	C	DER	GI_liver	4240
rs630923	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	11q23.3	11	118883644	1.074	C	7.00E-09	C	A	0.9924	0.7594	0.9544	0.838	0.8998	0.8888	C	ANC	GI_liver	34366
rs6449586	24121790	Levine DM	Barrett's esophagus	gastrointestinal_or_liver_disease	"2,416 European ancestry cases, 3,206 European ancestry controls"	EUR	5q11.1	5	51339044	1.1628	T	1.00E-06	C	T	0.9092	0.4481	0.2292	0.5497	0.4949	0.52622	T	ANC	GI_liver	5622
rs6501384	20208534	Rothenberg ME	Eosinophilic esophagitis (pediatric)	gastrointestinal_or_liver_disease	"181 European ancestry cases, 1,974 European ancestry controls"	EUR	17q24.3	17	70294992	1.41	T	6.00E-06	C	T	0.3691	0.3228	0.1845	0.3509	0.4397	0.3334	C	DER	GI_liver	2155
rs6545800	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	2p23.3	2	24896016	1.109	T	6.00E-16	C	T	0.8631	0.3487	0.4236	0.4274	0.455	0.50356	T	ANC	GI_liver	34366
rs6568421	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	6q21	6	105987150	1.108	G	8.00E-20	A	G	0.1483	0.1787	0	0.2913	0.1472	0.1531	A	DER	GI_liver	34366
rs6586030	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	10q23.1	10	80494291	1.115	G	9.00E-16	A	G	0.9781	0.9121	0.9812	0.8459	0.9376	0.93098	G	ANC	GI_liver	34366
rs6592362	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	11q14.2	11	87414396	1.083	A	2.00E-08	A	G	0.289	0.5288	0.6835	0.2753	0.3742	0.43016	G	DER	GI_liver	34366
rs6691847	23535911	Kitamoto T	Non-alcoholic fatty liver disease	gastrointestinal_or_liver_disease	"392 Japanese ancestry cases, 934 Japanese ancestry controls"	EAS	"1p35.2, 1p35.3"	1	29792805	1.32	C	7.00E-06	T	C	0.7716	0.8026	0.7956	0.8748	0.8988	0.82868	C	ANC	GI_liver	1326
rs670523	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	1q22	1	155908941	1.06	A	6.00E-11	A	G	0.9781	0.415	0.8383	0.3529	0.4468	0.60622	A	ANC	GI_liver	34366
rs6740462	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	2p14	2	65440138	1.081	A	2.00E-08	C	A	0.9175	0.7954	0.8254	0.7237	0.8108	0.81456	A	ANC	GI_liver	34366
rs6863411	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	5q31.3	5	142133639	1.089	T	4.00E-14	A	T	0.8064	0.6931	0.6369	0.6203	0.5358	0.6585	A	DER	GI_liver	34366
rs6920220	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	6q23.3	6	137685367	1.102	A	1.00E-21	G	A	0.0991	0.1037	0.004	0.169	0.0982	0.0948	G	DER	GI_liver	34366
rs7134599	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	12q15	12	68106295	1.096	A	9.00E-32	G	A	0.2859	0.2104	0.002	0.3688	0.1002	0.19346	G	DER	GI_liver	34366
rs7236477	20208534	Rothenberg ME	Eosinophilic esophagitis (pediatric)	gastrointestinal_or_liver_disease	"181 European ancestry cases, 1,974 European ancestry controls"	EUR	18q12.1	18	31322359	2.22	G	7.00E-06	A	G	0.1218	0.0648	0.0327	0.0616	0.1431	0.0848	A	DER	GI_liver	2155
rs7240004	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	18q21.1	18	48868651	1.057	A	1.00E-09	A	G	0.4175	0.5793	0.4712	0.6262	0.4581	0.51046	G	DER	GI_liver	34366
rs727088	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	18q22.2	18	69863203	1.077	G	5.00E-09	G	A	0.7428	0.4611	0.2887	0.4692	0.4775	0.48786	A	DER	GI_liver	34366
rs7282490	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	21q22.3	21	44195858	1.105	G	2.00E-26	G	A	0.1906	0.611	0.5437	0.3976	0.4366	0.4359	G	ANC	GI_liver	34366
rs7324845	23213074	Adams LA	Non-alcoholic fatty liver disease histology (other)	gastrointestinal_or_liver_disease	"126 European ancestry adolescent cases, 802 European ancestry adolescent controls"	EUR	13q14.13	13	46129007	3.29	A	3.00E-06	G	A	0.6142	0.902	0.8641	0.8956	0.9724	0.84966	A	ANC	GI_liver	928
rs7404095	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	16p12.2	16	23853269	1.06	C	1.00E-09	T	C	0.5946	0.4784	0.6101	0.5885	0.5879	0.5719	C	ANC	GI_liver	34366
rs7495132	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	15q26.1	15	90629669	1.134	C	9.00E-11	C	T	0.8245	0.9409	0.7907	0.9036	0.8436	0.86066	C	ANC	GI_liver	34366
rs7552722	23535911	Kitamoto T	Non-alcoholic fatty liver disease	gastrointestinal_or_liver_disease	"392 Japanese ancestry cases, 934 Japanese ancestry controls"	EAS	1p13.2	1	115378734	1.27	T	7.00E-06	T	C	0.1256	0.2349	0.2351	0.3688	0.2423	0.24134	C	DER	GI_liver	1326
rs7554511	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	1q32.1	1	200908434	1.164	C	1.00E-32	C	A	0.8638	0.8415	0.998	0.7266	0.8793	0.86184	C	ANC	GI_liver	34366
rs7608910	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	2p16.1	2	60977721	1.138	G	9.00E-32	A	G	0.3805	0.2738	0.0466	0.3628	0.1626	0.24526	A	DER	GI_liver	34366
rs7632500	24121790	Levine DM	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	gastrointestinal_or_liver_disease	"3,928 European ancestry cases, 3,207 European ancestry controls"	EUR	3q26.2	3	168007561	1.37	G	1.00E-06	A	G	0.4788	0.1801	0.1339	0.0417	0.0399	0.17488	G	ANC	GI_liver	7135
rs7657746	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	4q27	4	122240464	1.116	A	3.00E-13	A	G	0.6558	0.8487	0.9435	0.7584	0.8834	0.81796	A	ANC	GI_liver	34366
rs77569859	25017104	Kottyan LC	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"657 European ancestry cases, 9,296 European ancestry controls"	EUR	2p23.1	2	31188421	1.98	C	3.00E-10	T	C	0.0174	0.0562	0.0198	0.0318	0.0276	0.03056	C	ANC	GI_liver	9953
rs7904985	24121790	Levine DM	Barrett's esophagus	gastrointestinal_or_liver_disease	"2,416 European ancestry cases, 3,206 European ancestry controls"	EUR	10q23.2	10	86356722	1.17	A	6.00E-06	G	A	0.0688	0.1657	0.2252	0.3072	0.4489	0.24316	G	DER	GI_liver	5622
rs7911264	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	10q23.33	10	92677094	1.066	C	3.00E-08	T	C	0.503	0.5159	0.7619	0.5159	0.6002	0.57938	C	ANC	GI_liver	34366
rs8005161	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	14q31.3	14	88006251	1.153	T	2.00E-14	C	T	0.4213	0.1643	0.2063	0.0994	0.2945	0.23716	C	DER	GI_liver	34366
rs8008716	25407941	Sleiman PM	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"603 European ancestry cases, 3,637 European ancestry controls"	EUR	14q12	14	26656559	1.712	G	7.00E-08	A	G	0.1354	0.0764	0.001	0.0775	0.0204	0.06214	A	DER	GI_liver	4240
rs8041227	25017104	Kottyan LC	Eosinophilic esophagitis	gastrointestinal_or_liver_disease	"657 European ancestry cases, 9,296 European ancestry controls"	EUR	15q13.3	15	31246339	1.52	G	6.00E-10	G	A	0.9766	0.8761	0.9663	0.7704	0.8701	0.8919	G	ANC	GI_liver	9953
rs907611	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	11p15.5	11	1852842	1.068	A	3.00E-10	G	A	0.0877	0.353	0.2381	0.327	0.2382	0.2488	G	DER	GI_liver	34366
rs910049	23321320	Urabe Y	Hepatitis C induced liver cirrhosis	gastrointestinal_or_liver_disease	"682 Japanese ancestry cases, 1,045 Japanese ancestry controls"	EAS	6p21.32	6	32347950	1.46	T	9.00E-11	T	C	0.3033	0.219	0.2073	0.2237	0.1462	0.2199	C	DER	GI_liver	1727
rs913678	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	20q13.13	20	50338887	1.056	T	5.00E-08	T	C	0.0552	0.4813	0.3254	0.6093	0.6442	0.42308	C	DER	GI_liver	34366
rs917997	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	2q12.1	2	102454108	1.103	T	3.00E-20	T	C	0.0998	0.4726	0.4167	0.2207	0.4417	0.3303	C	DER	GI_liver	34366
rs921720	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	8q24.13	8	125522429	1.081	G	8.00E-20	A	G	0.1006	0.5634	0.37	0.6312	0.3732	0.40768	A	DER	GI_liver	34366
rs925255	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	2p23.2	2	28391927	1.092	C	3.00E-15	C	T	0.7504	0.7161	0.7639	0.5408	0.501	0.65444	C	ANC	GI_liver	34366
rs9257809	22961001	Su Z	Barrett's esophagus	gastrointestinal_or_liver_disease	"Up to 1,852 European ancestry cases, 5,172 European ancestry controls"	EUR	6p22.1	6	29388554	1.21	A	4.00E-09	A	G	0.9758	0.9784	1	0.9245	1	0.97574	A	ANC	GI_liver	7024
rs9297145	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	7q22.1	7	99161494	1.082	C	8.00E-12	C	A	0.5673	0.2536	0.1111	0.2893	0.4008	0.32442	C	ANC	GI_liver	34366
rs9314986	20460270	Garcia-Barcelo MM	Biliary atresia	gastrointestinal_or_liver_disease	"281 Chinese ancestry cases, 481 Chinese ancestry controls"	EAS	13q12.3	13	29884600	2.95	G	2.00E-06	G	T	0.3283	0.3329	0.0724	0.3052	0.2014	0.24804	T	DER	GI_liver	762
rs9358372	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	6p22.3	6	20812357	1.089	G	9.00E-14	G	A	0.3495	0.4078	0.5179	0.3678	0.4346	0.41552	G	ANC	GI_liver	34366
rs9405098	23321320	Urabe Y	Hepatitis C induced liver cirrhosis	gastrointestinal_or_liver_disease	"682 Japanese ancestry cases, 1,045 Japanese ancestry controls"	EAS	6p21.32	6	32411959	1.37	A	1.00E-10	G	A	0.0794	0.0317	0.2421	0.0239	0.1769	0.1108	G	DER	GI_liver	1727
rs941823	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	13q14.11	13	40439840	1.071	C	2.00E-14	T	C	0.7988	0.7954	0.8353	0.7356	0.9581	0.82464	T	DER	GI_liver	34366
rs9557195	23128233	Jostins L	Inflammatory bowel disease	gastrointestinal_or_liver_disease	"12,924 European ancestry cases, 21,442 European ancestry controls"	EUR	13q32.3	13	99304368	1.112	T	2.00E-14	T	C	0.9402	0.8516	0.9405	0.7753	0.8947	0.88046	T	ANC	GI_liver	34366
rs9936833	22961001	Su Z	Barrett's esophagus	gastrointestinal_or_liver_disease	"Up to 1,852 European ancestry cases, 5,172 European ancestry controls"	EUR	16q24.1	16	86369512	1.14	C	3.00E-10	C	T	0.3404	0.4265	0.1587	0.3559	0.4335	0.343	T	DER	GI_liver	7024
rs9999118	24797007	Holliday EG	Irritable bowel syndrome	gastrointestinal_or_liver_disease	"Up to 172 European ancestry cases, 1,398 European ancestry controls"	EUR	4q28.1	4	123130312	7.3	G	8.00E-08	A	G	0.0159	0.0086	0	0.0169	0	0.00828	A	DER	GI_liver	1570
rs1000113	17554300	WTCCC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,748 European ancestry cases, 2,938 European ancestry controls"	EUR	5q33.1	5	150860514	1.54	T	3.00E-07	C	T	0.2542	0.1297	0.4097	0.1044	0.1207	0.20374	C	DER	GI_liver	4686
rs10045431	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	5q33.3	5	159387525	1.11	C	4.00E-13	A	C	0.913	0.8271	0.9157	0.7177	0.8456	0.84382	C	ANC	GI_liver	8059
rs10065637	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	5q11.2	5	56143024	1.123	C	4.00E-12	C	T	0.9773	0.8746	0.9841	0.7813	0.8957	0.9026	C	ANC	GI_liver	34366
rs1016883	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	2q33.1	2	198016944	1.1	G	3.00E-08	G	A	0.7731	0.8184	0.7431	0.8042	0.8661	0.80098	G	ANC	GI_liver	34366
rs10181042	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	2p16.1	2	60997124	1.14	T	7.00E-09	C	T	0.4803	0.2925	0.0456	0.4105	0.1646	0.2787	C	DER	GI_liver	21389
rs10210302	17554300	WTCCC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,748 European ancestry cases, 2,938 European ancestry controls"	EUR	2q37.1	2	233250193	1.19	T	5.00E-14	C	T	0.2965	0.3256	0.3214	0.5378	0.4908	0.39442	T	ANC	GI_liver	4686
rs102275	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	11q12.2	11	61790331	1.08	C	2.00E-11	T	C	0.6974	0.6542	0.5675	0.3628	0.1595	0.48828	C	ANC	GI_liver	21389
rs1033180	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	6p25.3	6	383546	1.21	T	6.00E-08	C	T	0.0015	0.036	0	0.0785	0.0041	0.02402	C	DER	GI_liver	15283
rs10486483	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	7p15.2	7	26852821	1.089	A	3.00E-08	G	A	0.1634	0.183	0.1131	0.2217	0.1984	0.17592	A	ANC	GI_liver	34366
rs10488631	20639880	Liu X	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"453 European ancestry cases, 945 European ancestry controls,"	EUR	7q32.1	7	128954129	1.63	C	3.00E-10	T	C	0.0068	0.0749	0.002	0.1004	0.135	0.06382	T	DER	GI_liver	1398
rs10495903	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	2p21	2	43579779	1.14	T	2.00E-14	C	T	0.1762	0.0793	0.0069	0.1064	0.1544	0.10464	C	DER	GI_liver	21389
rs10734105	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	10q26.3	10	131373856	1.27	G	3.00E-08	G	A	0.5008	0.3112	0.1329	0.327	0.1748	0.28934	G	ANC	GI_liver	2994
rs10758669	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	9p24.1	9	4981602	1.18	C	1.00E-13	C	A	0.1362	0.4251	0.3651	0.3529	0.3937	0.3346	A	DER	GI_liver	21389
rs10758669	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	9p24.1	9	4981602	1.17	C	2.00E-25	C	A	0.1362	0.4251	0.3651	0.3529	0.3937	0.3346	A	DER	GI_liver	26405
rs10761659	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	10q21.2	10	62685804	1.23	G	4.00E-22	A	G	0.0787	0.6124	0.7361	0.503	0.638	0.51364	A	DER	GI_liver	21389
rs10781499	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	9q34.3	9	136371953	1.12	A	3.00E-19	G	A	0.2504	0.572	0.3185	0.3976	0.3937	0.38644	G	DER	GI_liver	26405
rs10797432	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	1p36.32	1	2569899	1.078	C	3.00E-12	C	T	0.3729	0.4813	0.4306	0.5318	0.3119	0.4257	C	ANC	GI_liver	34366
rs10806425	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	6q15	6	90216893	1.13	A	4.00E-10	C	A	0.18	0.3761	0.0883	0.4264	0.3579	0.28574	C	DER	GI_liver	15283
rs10865331	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	2p15	2	62324337	1.098	A	1.00E-09	A	G	0.5416	0.3905	0.4554	0.3847	0.4438	0.4432	G	DER	GI_liver	34366
rs10883365	17554300	WTCCC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,748 European ancestry cases, 2,938 European ancestry controls"	EUR	10q24.2	10	99528007	1.2	G	6.00E-08	G	A	0.4955	0.4049	0.4425	0.493	0.3691	0.441	A	DER	GI_liver	4686
rs10889677	19122664	Silverberg MS	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,022 European ancestry cases, 2,503 European ancestry controls"	EUR	"1p31.3, 1p31.3[rs11209003]; 1p31.3[rs11209002]"	1	67259437	1.29	A	1.00E-08	C	A	0.1324	0.245	0.7312	0.2982	0.5971	0.40078	C	DER	GI_liver	3525
rs10931468	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	2q32.2	2	190673836	1.5	A	2.00E-19	C	A	0.2663	0.2738	0.38	0.1461	0.1984	0.25292	A	ANC	GI_liver	7003
rs10936599	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	3q26.2	3	169774313	1.12	T	5.00E-07	C	T	0.0371	0.3545	0.5784	0.2425	0.2382	0.29014	C	DER	GI_liver	15283
rs10947261	23850713	Yang SK	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"532 Korean ancestry cases, 733 Korean ancestry controls"	EAS	6p21.32	6	32405455	1.36	T	3.00E-12	G	T	0.1377	0.1499	0.3155	0.1004	0.2178	0.18426	G	DER	GI_liver	1265
rs10975003	19915573	Asano K	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"376 Japanese ancestry cases, 934 Japanese ancestry controls"	EAS	9p24.1	9	5213687	1.34	C	1.00E-06	T	C	0.6914	0.4424	0.2282	0.3519	0.3824	0.41926	C	ANC	GI_liver	1310
rs10995271	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	10q21.2	10	62678726	1.25	C	4.00E-20	G	C	0.1369	0.2421	0.5288	0.3757	0.3517	0.32704	G	DER	GI_liver	8059
rs11103429	23665963	Dubinsky MC	Crohn's disease (need for surgery)	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"239 European ancestry cases that required surgery within 5 year, 375 European ancestry cases that did not require surgery within 5 years"	EUR	9q34.3	9	134614732	3.6	G	6.00E-06	A	G	0.1906	0.049	0.0526	0.0596	0.0736	0.08508	A	DER	GI_liver	624
rs11117432	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	16q24.1	16	85985665	1.31	G	5.00E-11	G	A	0.9826	0.915	0.9315	0.7813	0.9315	0.90838	G	ANC	GI_liver	7003
rs11150589	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	16p11.2	16	30471173	1.09	T	6.00E-10	T	C	0.8684	0.2997	0.0278	0.4404	0.2178	0.37082	T	ANC	GI_liver	34366
rs11167764	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	5q31.3	5	142099500	1.06	C	2.00E-09	A	C	0.8064	0.8329	0.8343	0.7903	0.7996	0.8127	C	ANC	GI_liver	21389
rs11175593	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	12q12	12	40208138	1.54	T	3.00E-10	C	T	0.003	0.1571	0.0595	0.0179	0.0593	0.05936	C	DER	GI_liver	8059
rs11190140	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	10q24.2	10	99531836	1.2	T	3.00E-16	T	C	0.3654	0.3934	0.4405	0.495	0.3671	0.41228	C	DER	GI_liver	8059
rs11190141	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	10q24.2	10	99532633	1.34	C	5.00E-07	C	T	0.5658	0.549	0.4643	0.6342	0.6595	0.57456	C	ANC	GI_liver	2994
rs11195128	23850713	Yang SK	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"532 Korean ancestry cases, 733 Korean ancestry controls"	EAS	10q25.2	10	110426390	1.42	T	2.00E-10	C	T	0.171	0.2075	0.1478	0.3201	0.184	0.20608	C	DER	GI_liver	1265
rs11209026	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	"1p31.3, 1p31.3[rs11209003]; 1p31.3[rs11209002]"	1	67240275	1.74	G	5.00E-28	G	A	0.997	0.9481	1	0.9384	0.9877	0.97424	G	ANC	GI_liver	26405
rs11209026	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	"1p31.3, 1p31.3[rs11209003]; 1p31.3[rs11209002]"	1	67240275	2.66	G	1.00E-64	G	A	0.997	0.9481	1	0.9384	0.9877	0.97424	G	ANC	GI_liver	21389
rs11221332	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	11q24.3	11	128511079	1.21	T	5.00E-16	C	T	0.0658	0.2017	0.0516	0.2445	0.2321	0.15914	C	DER	GI_liver	15283
rs11229030	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	11q12.1	11	57435536	1.15	C	8.00E-09	C	T	0.6732	0.2781	0.1587	0.3807	0.3221	0.36256	C	ANC	GI_liver	2994
rs11235667	23850713	Yang SK	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"532 Korean ancestry cases, 733 Korean ancestry controls"	EAS	11q13.4	11	73152652	1.46	G	7.00E-09	A	G	0	0	0.1071	0	0	0.02142	A	DER	GI_liver	1265
rs11465804	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	"1p31.3, 1p31.3[rs11209003]; 1p31.3[rs11209002]"	1	67236843	2.5	T	7.00E-63	T	G	0.9592	0.9409	1	0.9344	0.9898	0.96486	T	ANC	GI_liver	8059
rs11564258	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	12q12	12	40398498	1.74	A	6.00E-21	G	A	0.003	0.1556	0.0605	0.0229	0.1043	0.06926	A	ANC	GI_liver	21389
rs11574514	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	16q22.1	16	67937477	1.44	T	2.00E-07	C	T	0.0038	0.0389	0	0.0348	0.0072	0.01694	C	DER	GI_liver	2994
rs11584383	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	1q32.1	1	200966738	1.18	T	1.00E-11	T	C	0.8185	0.8386	0.997	0.7028	0.8824	0.84786	T	ANC	GI_liver	8059
rs11676348	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	2q35	2	218145423	1.07	T	1.00E-10	C	T	0.6596	0.5	0.3204	0.4592	0.4755	0.48294	C	DER	GI_liver	26405
rs11679592	25082827	Juliå´_Ì�å´__ A	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"up to 7,483 European ancestry cases, up to 21,211 European ancestry controls"	EUR	2p25.3	2	2402716	1.16	C	9.00E-06	C	T	0.8502	0.6801	0.7341	0.4851	0.6278	0.67546	C	ANC	GI_liver	28694
rs11712165	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	3q13.33	3	119399949	1.13	G	8.00E-09	T	G	0.0265	0.389	0.3423	0.3867	0.3006	0.28902	T	DER	GI_liver	15283
rs11739663	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	5p15.33	5	593968	1.071	T	2.00E-08	T	C	0.5212	0.8184	0.9901	0.7684	0.7924	0.7781	C	DER	GI_liver	34366
rs11742570	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	5p13.1	5	40410482	1.33	C	7.00E-36	T	C	0.6112	0.4438	0.1419	0.5895	0.4468	0.44664	C	ANC	GI_liver	21389
rs11747270	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	5q33.1	5	150879305	1.33	G	3.00E-16	A	G	0.5136	0.1499	0.4315	0.1064	0.2178	0.28384	G	ANC	GI_liver	8059
rs11805303	17554300	WTCCC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,748 European ancestry cases, 2,938 European ancestry controls"	EUR	1p31.3	1	67209833	1.39	T	6.00E-12	C	T	0.3018	0.1671	0.5407	0.3002	0.5521	0.37238	C	DER	GI_liver	4686
rs11871801	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	17q21.2	17	42418754	1.15	A	3.00E-08	A	C	0.7247	0.8545	0.9028	0.7724	0.5634	0.76356	A	ANC	GI_liver	21389
rs11894081	23266558	Yamazaki K	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"372 Japanese ancestry cases,3,389 Japanese ancestry controls"	EAS	2p25.2	2	5523876	1.22	T	4.00E-09	G	T	0.1392	0.7666	0.5823	0.7177	0.5317	0.5475	G	DER	GI_liver	3761
rs12134279	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	1q31.3	1	197812068	1.34	T	2.00E-14	C	T	0.0938	0.1916	0.2212	0.1839	0.2178	0.18166	C	DER	GI_liver	7003
rs12242110	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	10p11.21	10	35246767	1.15	G	1.00E-09	A	G	0.3707	0.3329	0.3155	0.3231	0.2975	0.32794	G	ANC	GI_liver	21389
rs12261843	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	10p11.21	10	35265126	1.07	G	7.00E-10	T	G	0.5567	0.3372	0.3294	0.2863	0.2904	0.36	T	DER	GI_liver	26405
rs1250550	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	10q22.3	10	79300560	1.19	C	1.00E-30	C	A	0.9289	0.7435	0.5952	0.7018	0.6748	0.72884	C	ANC	GI_liver	21389
rs12521868	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	5q31.1	5	132448701	1.23	T	1.00E-20	G	T	0.0378	0.2435	0.001	0.3867	0.0849	0.15078	G	DER	GI_liver	21389
rs12663356	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	6p22.3	6	21430497	1.095	C	4.00E-12	T	C	0.5325	0.5216	0.3373	0.5388	0.408	0.46764	T	DER	GI_liver	34366
rs12677663	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	8q21.11	8	73095112	1.15	T	2.00E-08	G	T	0.8154	0.5764	0.8532	0.6183	0.6984	0.71234	T	ANC	GI_liver	2994
rs12720356	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	19p13.2	19	10359299	1.12	C	1.00E-12	A	C	0.003	0.0476	0	0.0924	0.0112	0.03084	A	DER	GI_liver	21389
rs12722489	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	10p15.1	10	6060049	1.11	C	3.00E-09	C	T	0.9917	0.938	0.869	0.8579	0.8701	0.90534	C	ANC	GI_liver	21389
rs12727642	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	1p36.23	1	7986612	1.14	A	9.00E-08	C	A	0.0106	0.085	0.0585	0.159	0.1227	0.08716	C	DER	GI_liver	15283
rs12924729	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	16p13.13	16	11093926	1.29	G	3.00E-12	G	A	0.5968	0.755	0.7758	0.6571	0.5992	0.67678	G	ANC	GI_liver	7003
rs1297265	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	21q21.1	21	15444732	1.11	A	7.00E-13	A	G	0.5469	0.5576	0.7966	0.5616	0.6759	0.62772	G	DER	GI_liver	26405
rs12994997	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	2q37.1	2	233264857	1.233	A	4.00E-70	G	A	0.2995	0.3184	0.3224	0.5368	0.4949	0.3944	G	DER	GI_liver	34366
rs13003464	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	2p16.1	2	60959694	1.05	G	5.00E-09	A	G	0.913	0.3098	0.0417	0.3618	0.1677	0.3588	G	ANC	GI_liver	2994
rs13003464	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	2p16.1	2	60959694	1.15	G	4.00E-13	A	G	0.913	0.3098	0.0417	0.3618	0.1677	0.3588	G	ANC	GI_liver	15283
rs13010713	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	2q31.3	2	181131318	1.13	G	5.00E-11	A	G	0.4932	0.5893	0.7361	0.4324	0.6779	0.58578	A	DER	GI_liver	15283
rs13073817	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	3p24.3	3	18665366	1.08	A	7.00E-09	G	A	0.0862	0.1988	0.0298	0.332	0.2014	0.16964	G	DER	GI_liver	21389
rs13098911	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	3p21.31	3	46193709	1.3	T	3.00E-17	C	T	0.0038	0.0504	0.0446	0.0944	0.2924	0.09712	C	DER	GI_liver	15283
rs13126505	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	4q24	4	101944147	1.172	A	2.00E-12	G	A	0.0015	0.0331	0	0.0616	0	0.01924	G	DER	GI_liver	34366
rs13204742	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	6q22.33	6	127924620	1.173	T	8.00E-15	G	T	0.025	0.0548	0.001	0.1233	0.1125	0.06332	G	DER	GI_liver	34366
rs13314993	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	3p22.3	3	32973977	1.13	G	3.00E-09	G	T	0.8865	0.5403	0.5109	0.4712	0.4397	0.56972	G	ANC	GI_liver	15283
rs13428812	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	2p23.3	2	25269598	1.06	G	9.00E-10	A	G	0.3222	0.2262	0.2609	0.3499	0.2403	0.2799	A	DER	GI_liver	21389
rs1398024	18723019	Franke A	Crohn's disease and sarcoidosis (combined)	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"382 European ancestry Crohn's disease cases, 398 European ancestry Sarcoidosis cases, 394 European ancestry controls"	EUR	10p12.2	10	23376509	1.23	T	4.00E-06	G	T	0.5514	0.4755	0.0486	0.2137	0.2311	0.30406	G	DER	GI_liver	1174
rs1452787	22821403	Ellinghaus D	Sclerosing cholangitis and ulcerative colitis (combined)	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 389 European ancestry primary sclerosing cholangitis cases, 987 European ancestry ulcerative colitis cases, 2,968 European ancestry controls"	EUR	18q21.2	18	55539976	1.33	A	3.00E-08	A	G	0.9334	0.6556	0.6409	0.7028	0.6237	0.71128	A	ANC	GI_liver	4344
rs1456893	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	7p12.2	7	50230076	1.2	A	5.00E-09	G	A	0.6309	0.7752	0.4127	0.6948	0.8528	0.67328	A	ANC	GI_liver	8059
rs1456896	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	7p12.2	7	50264865	1.14	T	1.00E-08	C	T	0.5681	0.7666	0.4137	0.6869	0.8528	0.65762	T	ANC	GI_liver	21389
rs1551398	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	8q24.13	8	125527809	1.08	A	5.00E-09	G	A	0.1006	0.562	0.3056	0.6312	0.3691	0.3937	G	DER	GI_liver	8059
rs1558744	19122664	Silverberg MS	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,022 European ancestry cases, 2,503 European ancestry controls"	EUR	12q15	12	68110812	1.35	A	3.00E-12	G	A	0.5484	0.255	0.0903	0.4026	0.1544	0.29014	A	ANC	GI_liver	3525
rs16940186	23511034	Yang SK	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"388 Korean ancestry cases, 739 Korean ancestry controls"	EAS	16q24.1	16	85976134	1.56	C	4.00E-10	T	C	0.146	0.1657	0.2579	0.175	0.3057	0.21006	T	DER	GI_liver	1127
rs16940202	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	16q24.1	16	85980635	1.15	C	6.00E-19	T	C	0.0393	0.1657	0.2698	0.1889	0.3088	0.1945	C	ANC	GI_liver	26405
rs16967103	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	15q14	15	38606989	1.088	C	4.00E-09	T	C	0.326	0.1326	0.0278	0.1879	0.0849	0.15184	C	ANC	GI_liver	34366
rs17085007	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	13q12.13	13	26957130	1.16	C	1.00E-16	T	C	0.0673	0.183	0.251	0.1879	0.2669	0.19122	T	DER	GI_liver	26405
rs17221417	17554300	WTCCC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,748 European ancestry cases, 2,938 European ancestry controls"	EUR	16q12.1	16	50705671	1.29	G	4.00E-11	C	G	0.0446	0.1772	0.0089	0.2763	0.1104	0.12348	C	DER	GI_liver	4686
rs17229285	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	2q33.1	2	198658398	1.117	C	2.00E-13	C	T	0.9115	0.5836	0.7262	0.496	0.3569	0.61484	C	ANC	GI_liver	34366
rs17234657	17554300	WTCCC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,748 European ancestry cases, 2,938 European ancestry controls"	EUR	5p13.1	5	40401407	1.54	G	2.00E-12	T	G	0.1921	0.0706	0.003	0.1342	0.0102	0.08202	T	DER	GI_liver	4686
rs1728785	19915572	Barrett JC	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"2,361 European ancestry cases, 5,417 European ancestry controls"	EUR	16q22.1	16	68557327	1.17	C	3.00E-08	A	C	0.8918	0.7752	0.8125	0.7962	0.7597	0.80708	C	ANC	GI_liver	7778
rs1728918	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	2p23.3	2	27412596	1.123	A	5.00E-16	A	G	0.0257	0.2464	0.2292	0.2724	0.1391	0.18256	G	DER	GI_liver	34366
rs17293632	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	15q22.33	15	67150258	1.12	T	3.00E-19	C	T	0.0242	0.1239	0.0278	0.2147	0.138	0.10572	C	DER	GI_liver	21389
rs17309827	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	6p25.2	6	3433084	1.1	T	7.00E-09	T	G	0.9092	0.6816	0.5437	0.6193	0.8262	0.716	T	ANC	GI_liver	21389
rs1736020	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	21q21.1	21	15440233	1.16	C	9.00E-12	C	A	0.916	0.5994	0.7927	0.5795	0.6738	0.71228	C	ANC	GI_liver	21389
rs1736135	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	21q21.1	21	15432901	1.18	T	7.00E-09	T	C	0.9228	0.598	0.7917	0.5795	0.6738	0.71316	T	ANC	GI_liver	8059
rs1738074	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	6q25.3	6	159044945	1.16	T	3.00E-15	T	C	0.702	0.5548	0.5526	0.4334	0.3753	0.52362	T	ANC	GI_liver	15283
rs17388568	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	4q27	4	122408207	1.12	A	9.00E-07	G	A	0.0242	0.1585	0.121	0.2922	0.1493	0.14904	G	DER	GI_liver	26405
rs17391694	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	1p31.1	1	78157942	1.134	C	3.00E-09	C	T	0.9977	0.9496	0.999	0.9036	0.9908	0.96814	C	ANC	GI_liver	34366
rs17582416	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	10p11.21	10	34998722	1.16	G	2.00E-09	T	G	0.1997	0.3343	0.3115	0.3598	0.3211	0.30528	G	ANC	GI_liver	8059
rs17695092	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	5q35.2	5	173910850	1.095	T	5.00E-09	T	G	0.9675	0.83	0.9325	0.7127	0.9029	0.86912	G	DER	GI_liver	34366
rs17810546	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	3q25.33	3	159947262	1.36	G	4.00E-28	A	G	0.0015	0.1009	0	0.0944	0.0327	0.0459	A	DER	GI_liver	15283
rs1799964	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	6p21.33	6	31574531	1.19	C	4.00E-11	T	C	0.149	0.219	0.1954	0.2097	0.3476	0.22414	C	ANC	GI_liver	21389
rs1800693	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	12p13.31	12	6330843	1.22	C	2.00E-09	T	C	0.3608	0.281	0.123	0.4254	0.2832	0.29468	T	DER	GI_liver	7003
rs1801274	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	1q23.3	1	161509955	1.21	A	2.00E-20	A	G	0.4743	0.549	0.7222	0.4891	0.5808	0.56308	A	ANC	GI_liver	26405
rs1819658	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	10q21.1	10	58153390	1.19	C	9.00E-17	C	T	0.5053	0.7522	0.5585	0.7952	0.7515	0.67254	C	ANC	GI_liver	21389
rs1847472	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	6q15	6	90263440	1.07	C	5.00E-09	C	A	0.9107	0.7089	0.9573	0.6332	0.7628	0.79458	C	ANC	GI_liver	21389
rs1893217	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	18p11.21	18	12809341	1.25	G	1.00E-14	A	G	0.0356	0.0605	0.1925	0.1412	0.1779	0.12154	A	DER	GI_liver	21389
rs1893217	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	18p11.21	18	12809341	1.17	G	3.00E-10	A	G	0.0356	0.0605	0.1925	0.1412	0.1779	0.12154	A	DER	GI_liver	15283
rs1906493	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	8q24.13	8	126080638	1.19	T	3.00E-06	G	T	0.0953	0.0634	0.0704	0.164	0.2413	0.12688	G	DER	GI_liver	2994
rs1998598	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	1q31.3	1	197758512	1.04	G	9.00E-09	A	G	0.1498	0.2594	0.2242	0.2853	0.2526	0.23426	A	DER	GI_liver	21389
rs2006996	21699788	Okada Y	Ulcerative colitis or Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases"	EAS	9q32	9	114830358	1.67	T	4.00E-13	T	C	0.9644	0.7925	0.7034	0.9612	0.9039	0.86508	T	ANC	GI_liver	744
rs2024092	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	19p13.3	19	1124032	1.156	A	8.00E-22	G	A	0.2935	0.3775	0.1141	0.1988	0.2372	0.24422	G	DER	GI_liver	34366
rs2058660	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	2q12.1	2	102437989	1.19	G	2.00E-12	G	A	0.0991	0.4712	0.4167	0.2207	0.4427	0.33008	A	DER	GI_liver	21389
rs2062305	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	13q14.11	13	42478744	1.1	G	5.00E-10	G	A	0.6846	0.5389	0.8234	0.4632	0.5194	0.6059	G	ANC	GI_liver	21389
rs2076756	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	16q12.1	16	50722970	1.53	G	4.00E-69	A	G	0.0386	0.1369	0.0079	0.2256	0.1074	0.10328	A	DER	GI_liver	21389
rs2108225	19915573	Asano K	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"376 Japanese ancestry cases, 934 Japanese ancestry controls"	EAS	7q31.1	7	107812658	1.32	A	1.00E-07	G	A	0.8434	0.5634	0.4246	0.4364	0.5552	0.5646	A	ANC	GI_liver	1310
rs212388	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	6q25.3	6	159069404	1.105	C	3.00E-14	C	T	0.7088	0.585	0.5595	0.4026	0.4571	0.5426	C	ANC	GI_liver	34366
rs2149085	23850713	Yang SK	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"532 Korean ancestry cases, 733 Korean ancestry controls"	EAS	6q27	6	166957622	1.34	T	8.00E-12	T	C	0.2201	0.3833	0.373	0.506	0.2873	0.35394	C	DER	GI_liver	1265
rs2155219	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	11q13.5	11	76588150	1.13	T	5.00E-16	G	T	0.5923	0.5043	0.5268	0.4911	0.5174	0.52638	T	ANC	GI_liver	26405
rs2158836	19122664	Silverberg MS	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,022 European ancestry cases, 2,503 European ancestry controls"	EUR	7q31.1	7	107940394	1.21	A	7.00E-06	A	G	0.3064	0.3429	0.1379	0.3857	0.4172	0.31802	G	DER	GI_liver	3525
rs2188962	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	5q31.1	5	132435113	1.25	T	2.00E-18	C	T	0.0356	0.245	0.001	0.3867	0.0869	0.15104	C	DER	GI_liver	8059
rs2241880	17435756	Rioux JD	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"946 cases, 977 controls"	EUR	2q37.1	2	233274722	1.45	G	1.00E-13	A	G	0.3101	0.3213	0.3224	0.5368	0.4959	0.3973	A	DER	GI_liver	1923
rs2274910	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	1q23.3	1	160882256	1.14	C	1.00E-09	T	C	0.2769	0.6931	0.6935	0.6779	0.6278	0.59384	C	ANC	GI_liver	8059
rs2284553	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	21q22.11	21	33404389	1.123	G	2.00E-16	A	G	0.9501	0.5922	0.62	0.6193	0.6462	0.68556	T	DER	GI_liver	34366
rs2293370	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	3q13.33	3	119501087	1.35	G	3.00E-11	G	A	0.8253	0.9006	0.6438	0.836	0.7822	0.79758	G	ANC	GI_liver	7003
rs2297441	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	20q13.33	20	63696229	1.09	A	2.00E-10	G	A	0.9758	0.7349	0.3472	0.7962	0.7464	0.7201	G	DER	GI_liver	26405
rs2301436	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	6q27	6	167024500	1.21	T	1.00E-12	C	T	0.3555	0.3588	0.3581	0.4473	0.3211	0.36816	T	ANC	GI_liver	8059
rs2310173	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	2q11.2	2	102047167	1.09	T	3.00E-12	T	G	0.1135	0.4251	0.3135	0.4404	0.3875	0.336	G	DER	GI_liver	26405
rs2327832	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	6q23.3	6	137651931	1.23	G	4.00E-19	A	G	0.0946	0.1037	0.004	0.168	0.1104	0.09614	A	DER	GI_liver	15283
rs2395185	19915573	Asano K	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"376 Japanese ancestry cases, 934 Japanese ancestry controls"	EAS	"6p21.32, 6p21.32[rs2395185]; 6p21.32[rs28366298]"	6	32465390	1.92	G	5.00E-22	G	T	0.8079	0.5893	0.6895	0.6789	0.7014	0.6934	G	ANC	GI_liver	1310
rs2476601	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	1p13.2	1	113834946	1.26	G	4.00E-09	A	G	0.997	0.964	1	0.9056	0.9867	0.97066	G	ANC	GI_liver	21389
rs2542151	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	18p11.21	18	12779948	1.35	G	5.00E-17	G	T	0.1997	0.1484	0.1925	0.1392	0.1748	0.17092	T	DER	GI_liver	8059
rs254560	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	5q31.1	5	135107916	1.07	A	1.00E-09	G	A	0.0772	0.3602	0.2361	0.4115	0.3978	0.29656	G	DER	GI_liver	26405
rs2549794	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	5q15	5	96908845	1.05	C	1.00E-10	C	T	0.3238	0.3127	0.3423	0.4046	0.3139	0.33946	T	DER	GI_liver	21389
rs267939	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	5p15.2	5	10752203	1.1	C	6.00E-12	C	T	0.7821	0.4856	0.876	0.4006	0.684	0.64566	C	ANC	GI_liver	26405
rs2762051	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	13q14.2	13	50261579	1.13	T	7.00E-07	C	T	0.0552	0.245	0.0258	0.164	0.0746	0.11292	C	DER	GI_liver	15283
rs2797685	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	1p36.23	1	7819003	1.05	T	7.00E-09	C	T	0.357	0.1628	0.4851	0.1978	0.3149	0.30352	C	DER	GI_liver	21389
rs281379	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	19q13.33	19	48711017	1.07	A	7.00E-12	G	A	0.1967	0.304	0.004	0.4602	0.229	0.23878	A	ANC	GI_liver	21389
rs2816958	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	1q32.1	1	200132792	1.23	G	2.00E-17	A	G	0.7126	0.9049	0.9732	0.8757	0.8661	0.8665	A	DER	GI_liver	34366
rs2836878	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	21q22.2	21	39093608	1.25	G	2.00E-22	G	A	0.8812	0.7003	0.8254	0.7425	0.7464	0.77916	A	DER	GI_liver	26405
rs28374715	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	15q15.1	15	41271752	1.082	A	2.00E-08	A	G	0.7383	0.8343	0.9881	0.7376	0.8067	0.821	A	ANC	GI_liver	34366
rs2838519	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	21q22.3	21	44195140	1.18	G	2.00E-14	G	A	0.2852	0.621	0.5466	0.3976	0.4417	0.45842	G	ANC	GI_liver	21389
rs2838519	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	21q22.3	21	44195140	1.14	G	6.00E-11	G	A	0.2852	0.621	0.5466	0.3976	0.4417	0.45842	G	ANC	GI_liver	26405
rs2870946	19122664	Silverberg MS	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,022 European ancestry cases, 2,503 European ancestry controls"	EUR	12q15	12	68202881	1.54	C	5.00E-07	T	C	0.1112	0.0504	0	0.0755	0.0419	0.0558	T	DER	GI_liver	3525
rs2872507	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	"17q12, 17q21.1"	17	39884510	1.15	A	5.00E-11	G	A	0.2443	0.3516	0.2827	0.4722	0.3129	0.33274	G	DER	GI_liver	26405
rs2872507	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	"17q12, 17q21.1"	17	39884510	1.14	A	2.00E-09	G	A	0.2443	0.3516	0.2827	0.4722	0.3129	0.33274	G	DER	GI_liver	21389
rs2945412	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	17q11.2	17	27516617	1.137	A	9.00E-17	G	A	0.8154	0.6095	0.3234	0.6143	0.6759	0.6077	A	ANC	GI_liver	34366
rs3024493	20228798	Franke A	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,043 European ancestry cases, 1,703 European ancestry controls"	EUR	1q32.1	1	206770623	1.35	A	1.00E-12	C	A	0.0151	0.0807	0.0278	0.166	0.1401	0.08594	C	DER	GI_liver	2746
rs3024505	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	1q32.1	1	206766559	1.12	A	2.00E-14	G	A	0.0318	0.0821	0.0278	0.168	0.1391	0.08976	G	DER	GI_liver	21389
rs3024505	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	1q32.1	1	206766559	1.25	A	6.00E-17	G	A	0.0318	0.0821	0.0278	0.168	0.1391	0.08976	G	DER	GI_liver	26405
rs3091315	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	17q12	17	34266646	1.2	A	2.00E-13	A	G	0.5923	0.5058	0.4534	0.6829	0.6779	0.58246	A	ANC	GI_liver	21389
rs3091316	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	17q12	17	34266955	1.14	G	4.00E-08	G	A	0.7655	0.5187	0.4534	0.6829	0.6759	0.61928	G	ANC	GI_liver	2994
rs3091338	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	5q31.1	5	132067045	1.23	T	4.00E-08	C	T	0.1218	0.2522	0.001	0.3887	0.0869	0.17012	C	DER	GI_liver	2994
rs3094188	23266558	Yamazaki K	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"372 Japanese ancestry cases,3,389 Japanese ancestry controls"	EAS	6p21.33	6	31174468	1.61	C	7.00E-07	C	A	0.2337	0.2781	0.2619	0.327	0.3926	0.29866	C	ANC	GI_liver	3761
rs3194051	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	5p13.2	5	35876172	1.07	G	4.00E-08	A	G	0.348	0.1816	0.0625	0.2823	0.1769	0.21026	A	DER	GI_liver	26405
rs3197999	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	3p21.31	3	49684099	1.22	A	6.00E-17	G	A	0.2179	0.1686	0.0565	0.3131	0.1881	0.18884	G	DER	GI_liver	21389
rs35675666	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	1p36.23	1	7961913	1.08	G	5.00E-09	G	T	0.7504	0.8876	0.9385	0.84	0.8865	0.8606	G	ANC	GI_liver	26405
rs359457	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	5q35.2	5	173852839	1.08	T	3.00E-12	C	T	0.6876	0.4294	0.3978	0.5905	0.6176	0.54458	T	ANC	GI_liver	21389
rs3745516	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	19q13.33	19	50423485	1.38	A	2.00E-13	A	G	0.739	0.3703	0.7857	0.2296	0.3988	0.50468	G	DER	GI_liver	7003
rs3749946	24837172	Juyal G	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"603 North Indian ancestry cases, 622 North Indian ancestry controls"	SAS	6p21.33	6	31481085	1.97	A	2.00E-15	C	A	0.2337	0.1138	0.0704	0.0726	0.0869	0.11548	C	DER	GI_liver	1225
rs3764147	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	13q14.11	13	43883789	1.155	G	2.00E-21	A	G	0.3048	0.3646	0.3472	0.2266	0.3047	0.30958	A	DER	GI_liver	34366
rs3774959	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	4q24	4	102589957	1.118	A	4.00E-12	G	A	0.2231	0.4568	0.4544	0.3588	0.2577	0.35016	G	DER	GI_liver	34366
rs3790567	20639880	Liu X	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"453 European ancestry cases, 945 European ancestry controls,"	EUR	1p31.3	1	67356694	1.48	A	8.00E-12	A	G	0.7897	0.3199	0.247	0.2435	0.226	0.36522	A	ANC	GI_liver	1398
rs3792109	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	2q37.1	2	233275771	1.34	A	7.00E-41	G	A	0.2239	0.3127	0.3224	0.5437	0.4939	0.37932	A	ANC	GI_liver	21389
rs3810936	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	9q32	9	114790605	1.21	C	1.00E-15	T	C	0.913	0.6988	0.5069	0.675	0.6943	0.6976	C	ANC	GI_liver	21389
rs3828309	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	2q37.1	2	233271764	1.25	G	2.00E-32	A	G	0.2224	0.3141	0.3244	0.5368	0.4949	0.37852	A	DER	GI_liver	8059
rs3897478	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	1p12	1	119908567	1.161	T	2.00E-11	T	C	0.6225	0.8804	0.9524	0.8897	0.771	0.8232	T	ANC	GI_liver	34366
rs4077515	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	9q34.3	9	136372044	1.18	T	1.00E-36	C	T	0.2519	0.5706	0.3214	0.3966	0.3926	0.38662	C	DER	GI_liver	21389
rs4151657	24837172	Juyal G	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"603 North Indian ancestry cases, 622 North Indian ancestry controls"	SAS	"6p21.33, 6p21.33[rs4151657]; 6p21.33[rs2261033]"	6	31949763	1.54	C	5.00E-14	T	C	0.0461	0.3069	0.3105	0.3648	0.2924	0.26414	T	DER	GI_liver	1225
rs415890	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	6q27	6	166993145	1.17	C	3.00E-12	G	C	0.2247	0.3833	0.373	0.506	0.2883	0.35506	C	ANC	GI_liver	21389
rs4246905	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	9q32	9	114790969	1.1	C	6.00E-12	T	C	0.9576	0.7882	0.6528	0.7028	0.7791	0.7761	G	DER	GI_liver	26405
rs4263839	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	9q32	9	114804160	1.22	G	3.00E-10	A	G	0.9092	0.7291	0.5149	0.6779	0.7556	0.71734	G	ANC	GI_liver	8059
rs4380874	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	7q31.1	7	107839870	1.137	T	2.00E-26	T	C	0.1619	0.3487	0.128	0.4056	0.4172	0.29228	C	DER	GI_liver	34366
rs4409764	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	10q24.2	10	99524480	1.22	T	2.00E-20	T	G	0.5794	0.415	0.4425	0.492	0.3671	0.4592	T	ANC	GI_liver	21389
rs4510766	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	7q31.1	7	107852344	1.2	A	2.00E-16	A	G	0.8654	0.6037	0.4683	0.5686	0.6728	0.63576	A	ANC	GI_liver	26405
rs4613763	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	5p13.1	5	40392626	1.32	C	7.00E-27	T	C	0.1929	0.0706	0.003	0.1342	0.0102	0.08218	T	DER	GI_liver	8059
rs4656940	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	1q23.3	1	160860478	1.15	A	6.00E-07	A	G	0.5983	0.7637	0.6002	0.8062	0.6431	0.6823	A	ANC	GI_liver	21389
rs4675374	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	2q33.2	2	203937855	1.14	T	6.00E-09	T	C	0.733	0.2262	0.3859	0.2157	0.183	0.34876	T	ANC	GI_liver	15283
rs4676406	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	2q37.3	2	240639691	1.14	T	8.00E-11	G	T	0.4077	0.6196	0.9484	0.5258	0.6943	0.63916	T	ANC	GI_liver	26405
rs4676410	22821403	Ellinghaus D	Sclerosing cholangitis and ulcerative colitis (combined)	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 389 European ancestry primary sclerosing cholangitis cases, 987 European ancestry ulcerative colitis cases, 2,968 European ancestry controls"	EUR	2q37.3	2	240624322	1.38	A	2.00E-09	G	A	0.3434	0.3977	0.2877	0.1988	0.1442	0.27436	A	ANC	GI_liver	4344
rs4679904	19458352	Hirschfield GM	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"505 European ancestry cases, 1,507 European ancestry controls"	EUR	3q25.33	3	160623108	1.38	C	1.00E-06	C	T	0.9402	0.7622	0.8532	0.7406	0.8507	0.82938	C	ANC	GI_liver	2012
rs4722672	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	7p15.2	7	27192143	1.091	C	2.00E-08	C	T	0.4713	0.2637	0.4157	0.172	0.1513	0.2948	C	ANC	GI_liver	34366
rs4728142	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	7q32.1	7	128933913	1.104	A	4.00E-14	G	A	0.2398	0.3098	0.1042	0.4493	0.3947	0.29956	G	DER	GI_liver	34366
rs4802307	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	19q13.32	19	46346549	1.099	G	2.00E-10	G	T	0.9554	0.7896	0.9623	0.6978	0.8742	0.85586	G	ANC	GI_liver	34366
rs4809330	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	20q13.33	20	63718234	1.12	G	3.00E-15	A	G	0.947	0.6945	0.3651	0.7147	0.7423	0.69272	A	DER	GI_liver	21389
rs483905	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	11q21	11	96290263	1.056	A	1.00E-08	G	A	0.1921	0.2406	0.3175	0.2942	0.2597	0.26082	G	DER	GI_liver	34366
rs485499	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	3q25.33	3	160028076	1.38	T	2.00E-16	T	C	0.9312	0.7867	0.8641	0.6511	0.8252	0.81166	T	ANC	GI_liver	7003
rs4871611	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	8q24.13	8	125525328	1.17	A	2.00E-12	G	A	0.1006	0.562	0.3056	0.6312	0.3691	0.3937	G	DER	GI_liver	21389
rs4899260	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	14q24.1	14	68811487	1.12	T	4.00E-07	C	T	0.3941	0.1744	0.003	0.2376	0.1687	0.19556	C	DER	GI_liver	15283
rs4902642	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	14q24.1	14	68743482	1.07	G	2.00E-10	G	A	0.7489	0.6787	0.7113	0.5875	0.6217	0.66962	G	ANC	GI_liver	21389
rs4938534	23000144	Nakamura M	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"487 Japanese ancestry cases, 476 Japanese ancestry controls"	EAS	11q23.1	11	111404408	1.39	A	2.00E-08	G	A	0.3306	0.7061	0.4841	0.6402	0.409	0.514	A	ANC	GI_liver	963
rs4979462	23000144	Nakamura M	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"487 Japanese ancestry cases, 476 Japanese ancestry controls"	EAS	9q32	9	114804733	1.56	T	3.00E-14	C	T	0.3722	0.1628	0.2649	0.0169	0.0552	0.1744	C	DER	GI_liver	963
rs516246	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	19q13.33	19	48702915	1.107	T	1.00E-15	C	T	0.4887	0.3415	0.004	0.4414	0.2812	0.31136	C	DER	GI_liver	34366
rs538147	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	11q13.1	11	64362250	1.23	G	2.00E-10	G	A	0.9516	0.6196	0.7927	0.6282	0.6452	0.72746	G	ANC	GI_liver	7003
rs549182	24837172	Juyal G	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"603 North Indian ancestry cases, 622 North Indian ancestry controls"	SAS	6p21.32	6	32237268	1.59	A	8.00E-10	G	A	0.0696	0.0533	0.1111	0.0239	0.1411	0.0798	G	DER	GI_liver	1225
rs561722	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	11q23.2	11	114516108	1.12	C	5.00E-17	C	T	0.6725	0.6916	0.3323	0.664	0.6912	0.61032	C	ANC	GI_liver	34366
rs6017342	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	20q13.12	20	44436388	1.228	C	1.00E-43	A	C	0.767	0.7262	0.8948	0.5199	0.6861	0.7188	C	ANC	GI_liver	34366
rs6088765	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	20q11.22	20	35211477	1.079	G	2.00E-08	T	G	0.8079	0.3631	0.3631	0.4384	0.6033	0.51516	G	ANC	GI_liver	34366
rs6426833	19122664	Silverberg MS	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,022 European ancestry cases, 2,503 European ancestry controls"	EUR	1p36.13	1	19845367	1.37	G	5.00E-13	G	A	0.5416	0.5115	0.245	0.4513	0.3088	0.41164	G	ANC	GI_liver	3525
rs6426833	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	1p36.13	1	19845367	1.265	A	2.00E-68	G	A	0.4584	0.4885	0.755	0.5487	0.6912	0.58836	G	DER	GI_liver	34366
rs6441286	19458352	Hirschfield GM	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"505 European ancestry cases, 1,507 European ancestry controls"	EUR	3q25.33	3	160011091	1.54	G	2.00E-14	T	G	0.211	0.4625	0.4554	0.4215	0.4192	0.39392	T	DER	GI_liver	2012
rs6441961	18311140	Hunt KA	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"767 European ancestry cases, 1,422 European ancestry controls"	EUR	3p21.31	3	46310893	1.21	T	3.00E-07	T	C	0.1142	0.3184	0.3115	0.3022	0.3538	0.28002	C	DER	GI_liver	2189
rs6451493	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	5p13.1	5	40410833	1.08	T	3.00E-09	G	T	0.6127	0.4438	0.1419	0.5895	0.4468	0.44694	T	ANC	GI_liver	26405
rs6499188	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	16q22.1	16	68640885	1.14	A	4.00E-08	G	A	0.7602	0.7464	0.7817	0.7644	0.7526	0.76106	A	ANC	GI_liver	26405
rs653178	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	12q24.12	12	111569952	1.2	C	7.00E-21	C	T	0.0189	0.2522	0.003	0.4662	0.0675	0.16156	T	DER	GI_liver	15283
rs6545946	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	2p15	2	62486398	1.16	C	7.00E-09	C	T	0.6589	0.7565	0.8343	0.7833	0.817	0.77	T	DER	GI_liver	2994
rs6556412	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	5q33.3	5	159360377	1.18	A	5.00E-14	G	A	0.385	0.3127	0.4712	0.3489	0.3906	0.38168	A	ANC	GI_liver	21389
rs6568421	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	6q21	6	105987150	1.13	G	4.00E-08	A	G	0.1483	0.1787	0	0.2913	0.1472	0.1531	A	DER	GI_liver	21389
rs6584283	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	10q24.2	10	99530544	1.21	T	8.00E-21	T	C	0.3752	0.379	0.4415	0.4761	0.3569	0.40574	C	DER	GI_liver	26405
rs6596075	17554300	WTCCC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,748 European ancestry cases, 2,938 European ancestry controls"	EUR	5q31.1	5	132406536	1.55	C	3.00E-06	G	C	0.4433	0.7824	0.9018	0.8509	0.8384	0.76336	G	DER	GI_liver	4686
rs6601764	17554300	WTCCC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,748 European ancestry cases, 2,938 European ancestry controls"	EUR	10p15.1	10	3820350	1.16	C	9.00E-06	C	T	0.7663	0.5519	0.7788	0.4672	0.6861	0.65006	T	DER	GI_liver	4686
rs6651252	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	8q24.21	8	128554935	1.23	T	4.00E-18	T	C	0.6581	0.8818	0.9792	0.8946	0.8957	0.86188	T	ANC	GI_liver	21389
rs6679677	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	1p13.2	1	113761186	1.196	C	2.00E-15	C	A	0.9977	0.9697	1	0.9085	0.9867	0.97252	C	ANC	GI_liver	34366
rs668853	19122664	Silverberg MS	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,022 European ancestry cases, 2,503 European ancestry controls"	EUR	9q21.32	9	82696232	1.2	C	2.00E-06	C	T	0.593	0.5216	0.2808	0.4155	0.3006	0.4223	C	ANC	GI_liver	3525
rs6716753	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	2q37.1	2	230232414	1.134	C	1.00E-16	T	C	0.1989	0.1225	0.001	0.173	0.1483	0.12874	C	ANC	GI_liver	34366
rs6806528	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	3p14.1	3	69203748	1.19	T	2.00E-07	C	T	0.084	0.0504	0.0159	0.1044	0.0297	0.05688	T	ANC	GI_liver	15283
rs6822844	17558408	van Heel DA	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"778 European ancestry cases, 1,422 European ancestry controls"	EUR	4q27	4	122588266	1.59	G	1.00E-14	G	T	0.9887	0.9395	0.999	0.8469	0.9315	0.94112	G	ANC	GI_liver	2200
rs6837335	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	4p11	4	48361966	1.086	G	2.00E-08	A	G	0.4561	0.5389	0.5337	0.6382	0.7188	0.57714	A	DER	GI_liver	34366
rs6856616	23850713	Yang SK	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"532 Korean ancestry cases, 733 Korean ancestry controls"	EAS	4p14	4	38323415	1.43	C	4.00E-14	T	C	0.3343	0.1671	0.2321	0.0596	0.2689	0.2124	T	DER	GI_liver	1265
rs6908425	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	6p22.3	6	20728500	1.21	C	9.00E-10	T	C	0.8071	0.7882	0.8095	0.7952	0.7004	0.78008	C	ANC	GI_liver	8059
rs6911490	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	6q21	6	106074152	1.08	T	1.00E-08	T	C	0.0151	0.0951	0	0.2266	0.0583	0.07902	C	DER	GI_liver	26405
rs6920220	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	6q23.3	6	137685367	1.14	A	8.00E-17	G	A	0.0991	0.1037	0.004	0.169	0.0982	0.0948	G	DER	GI_liver	26405
rs694739	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	11q13.1	11	64329761	1.1	A	6.00E-10	A	G	0.9735	0.6225	0.8423	0.6193	0.774	0.76632	A	ANC	GI_liver	21389
rs6974491	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	7p14.1	7	37334906	1.14	A	2.00E-07	G	A	0.0726	0.1354	0.004	0.1491	0.0869	0.0896	G	DER	GI_liver	15283
rs6974491	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	7p14.1	7	37334906	1.25	A	4.00E-08	G	A	0.0726	0.1354	0.004	0.1491	0.0869	0.0896	G	DER	GI_liver	7003
rs7015630	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	8q21.3	8	89863690	1.075	T	1.00E-08	T	C	0.5983	0.817	0.752	0.7266	0.8793	0.75464	T	ANC	GI_liver	34366
rs7076156	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	10q21.2	10	62655424	1.19	G	7.00E-09	A	G	0.9826	0.8329	0.8968	0.7266	0.8701	0.8618	G	ANC	GI_liver	2994
rs7134599	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	12q15	12	68106295	1.19	A	1.00E-16	G	A	0.2859	0.2104	0.002	0.3688	0.1002	0.19346	G	DER	GI_liver	26405
rs7208487	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	17q12	17	39387196	1.32	T	8.00E-07	T	G	0.6589	0.7637	0.7619	0.838	0.9213	0.78876	T	ANC	GI_liver	7003
rs7210086	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	17q24.3	17	72645559	1.111	A	2.00E-09	A	C	0.8949	0.7608	0.8552	0.833	0.774	0.82358	A	ANC	GI_liver	34366
rs734999	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	1p36.32	1	2581777	1.05	C	3.00E-09	C	T	0.1415	0.4597	0.4325	0.5308	0.3108	0.37506	C	ANC	GI_liver	26405
rs736289	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	19q13.11	19	33266156	1.06	T	9.00E-09	T	C	0.3101	0.7363	0.5208	0.6262	0.5092	0.54052	C	DER	GI_liver	21389
rs740495	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	19p13.3	19	1124836	1.16	G	8.00E-12	A	G	0.6369	0.4179	0.3224	0.2505	0.3466	0.39486	G	ANC	GI_liver	21389
rs7423615	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	2q37.1	2	230252159	1.12	T	3.00E-13	C	T	0.087	0.111	0.001	0.166	0.1503	0.10306	C	DER	GI_liver	21389
rs744166	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	17q21.2	17	42362183	1.18	A	7.00E-12	A	G	0.2814	0.7133	0.6022	0.5855	0.4888	0.53424	G	DER	GI_liver	8059
rs751728	23850713	Yang SK	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"532 Korean ancestry cases, 733 Korean ancestry controls"	EAS	6p21.31	6	33796256	1.32	T	1.00E-08	C	T	0.3086	0.3415	0.7778	0.3519	0.6196	0.47988	C	DER	GI_liver	1265
rs7517810	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	1q24.3	1	172884320	1.22	T	2.00E-15	C	T	0.2685	0.5173	0.8512	0.2326	0.411	0.45612	C	DER	GI_liver	21389
rs7524102	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	1p36.12	1	22371954	1.1	A	2.00E-13	A	G	0.6634	0.8602	0.7649	0.835	0.7873	0.78216	G	DER	GI_liver	26405
rs7554511	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	1q32.1	1	200908434	1.14	C	2.00E-07	C	A	0.8638	0.8415	0.998	0.7266	0.8793	0.86184	C	ANC	GI_liver	21389
rs7554511	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	1q32.1	1	200908434	1.19	C	2.00E-13	C	A	0.8638	0.8415	0.998	0.7266	0.8793	0.86184	C	ANC	GI_liver	26405
rs7608910	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	2p16.1	2	60977721	1.19	G	2.00E-14	A	G	0.3805	0.2738	0.0466	0.3628	0.1626	0.24526	A	DER	GI_liver	26405
rs762421	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	21q22.3	21	44195678	1.13	G	1.00E-09	G	A	0.0961	0.5937	0.4524	0.3847	0.3211	0.3696	A	DER	GI_liver	8059
rs76418789	23850713	Yang SK	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"532 Korean ancestry cases, 733 Korean ancestry controls"	EAS	1p31.3	1	67182913	2.06	G	2.00E-10	G	A	0.9992	1	0.9474	0.998	1	0.98892	G	ANC	GI_liver	1265
rs7665090	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	4q24	4	102630446	1.26	G	4.00E-12	A	G	0.6641	0.6542	0.5218	0.493	0.4131	0.54924	G	ANC	GI_liver	7003
rs7702331	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	5q13.2	5	73255307	1.12	A	6.00E-12	A	G	0.4592	0.6888	0.8671	0.6133	0.7137	0.66842	G	DER	GI_liver	21389
rs7705924	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	5q21.1	5	102611094	1.48	G	2.00E-08	A	G	0.0794	0.0778	0.0179	0.0507	0.046	0.05436	A	DER	GI_liver	2994
rs7714584	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	5q33.1	5	150890858	1.37	G	8.00E-19	A	G	0.5136	0.1499	0.4306	0.1064	0.2178	0.28366	A	DER	GI_liver	21389
rs7746082	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	6q21	6	105987394	1.17	C	2.00E-10	G	C	0.0129	0.1671	0	0.2913	0.1472	0.1237	G	DER	GI_liver	8059
rs7774434	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	6p21.32	6	32689801	1.6	C	4.00E-34	T	C	0.3971	0.5303	0.4058	0.4294	0.5542	0.46336	C	ANC	GI_liver	7003
rs780093	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	2p23.3	2	27519736	1.15	T	5.00E-11	T	C	0.0923	0.3573	0.4802	0.4115	0.1963	0.30752	C	DER	GI_liver	21389
rs7807268	17554300	WTCCC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,748 European ancestry cases, 2,938 European ancestry controls"	EUR	7q36.1	7	148560956	1.38	G	4.00E-06	G	C	0.5151	0.4409	0.6329	0.4443	0.5112	0.50888	C	DER	GI_liver	4686
rs7809799	20228798	Franke A	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,043 European ancestry cases, 1,703 European ancestry controls"	EUR	7q22.1	7	99162881	1.56	G	9.00E-11	G	A	0.205	0.0504	0	0.0616	0.0419	0.07178	A	DER	GI_liver	2746
rs7927894	18587394	Barrett JC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"3,230 European ancestry cases, 4,829 European ancestry controls"	EUR	11q13.5	11	76590272	1.16	T	1.00E-09	C	T	0.3472	0.2392	0.2143	0.3738	0.2996	0.29482	C	DER	GI_liver	8059
rs7927997	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	11q13.5	11	76590331	1.17	T	6.00E-13	C	T	0.2806	0.2378	0.2143	0.3748	0.2996	0.28142	C	DER	GI_liver	21389
rs798502	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	7p22.3	7	2750246	1.127	A	6.00E-17	A	C	0.9115	0.7392	0.6845	0.7187	0.8446	0.7797	A	ANC	GI_liver	34366
rs8005161	21102463	Franke A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,333 European ancestry cases, 15,056 European ancestry controls"	EUR	14q31.3	14	88006251	1.23	T	4.00E-18	C	T	0.4213	0.1643	0.2063	0.0994	0.2945	0.23716	C	DER	GI_liver	21389
rs8017161	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	14q32.32	14	103096858	1.22	A	3.00E-13	G	A	0.3101	0.5029	0.5972	0.3777	0.5061	0.4588	G	DER	GI_liver	7003
rs802734	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	6q22.33	6	127957653	1.17	G	3.00E-14	A	G	0.1074	0.2363	0.1508	0.2853	0.2434	0.20464	A	DER	GI_liver	15283
rs8179646	25082827	Juliå´_Ì�å´__ A	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"up to 7,483 European ancestry cases, up to 21,211 European ancestry controls"	EUR	2q24.1	2	156742166	1.17	T	6.00E-06	C	T	0.1415	0.5677	0.6776	0.3777	0.4611	0.44512	C	DER	GI_liver	28694
rs859637	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	1q24.3	1	172741860	1.1	T	2.00E-06	T	C	0.2466	0.6182	0.9137	0.4573	0.4233	0.53182	C	DER	GI_liver	15283
rs860413	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	5p13.2	5	35942940	1.3	A	1.00E-11	A	C	0.9077	0.7839	0.8175	0.7127	0.7761	0.79958	A	ANC	GI_liver	7003
rs864745	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	7p15.1	7	28140937	1.087	T	4.00E-09	T	C	0.789	0.6354	0.7728	0.4801	0.7628	0.68802	T	ANC	GI_liver	34366
rs886774	19915572	Barrett JC	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"2,361 European ancestry cases, 5,417 European ancestry controls"	EUR	7q31.1	7	107854989	1.11	G	3.00E-08	G	A	0.152	0.366	0.1974	0.3887	0.4458	0.30998	A	DER	GI_liver	7778
rs907092	19458352	Hirschfield GM	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"505 European ancestry cases, 1,507 European ancestry controls"	EUR	17q12	17	39766006	1.29	A	8.00E-06	G	A	0.1384	0.3401	0.2937	0.4732	0.3119	0.31146	G	DER	GI_liver	2012
rs907611	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	11p15.5	11	1852842	1.08	A	1.00E-10	G	A	0.0877	0.353	0.2381	0.327	0.2382	0.2488	G	DER	GI_liver	26405
rs911263	21399635	Mells GF	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)"	EUR	14q24.1	14	68286876	1.29	T	2.00E-11	C	T	0.1399	0.7147	0.8998	0.6501	0.7802	0.63694	C	DER	GI_liver	7003
rs917997	20190752	Dubois PC	Celiac disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"4,533 European ancestry cases, 10,750 European ancestry controls"	EUR	2q12.1	2	102454108	1.19	T	1.00E-15	T	C	0.0998	0.4726	0.4167	0.2207	0.4417	0.3303	C	DER	GI_liver	15283
rs9258260	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	6p22.1	6	29755384	1.45	T	2.00E-10	C	T	0.1316	0.0793	0.2659	0.0915	0.227	0.15906	C	DER	GI_liver	2994
rs9263739	19915573	Asano K	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"376 Japanese ancestry cases, 934 Japanese ancestry controls"	EAS	6p21.33	6	31143579	2.73	T	4.00E-67	C	T	0.1566	0.1354	0.0952	0.172	0.1411	0.14006	C	DER	GI_liver	1310
rs9264942	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	6p21.33	6	31306603	1.145	C	5.00E-28	T	C	0.27	0.304	0.3929	0.3618	0.5245	0.37064	T	DER	GI_liver	34366
rs9267911	23266558	Yamazaki K	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"372 Japanese ancestry cases,3,389 Japanese ancestry controls"	EAS	6p21.32	6	32237333	1.5	T	3.00E-07	T	C	0.6135	0.5173	0.5466	0.5666	0.4877	0.54634	C	DER	GI_liver	3761
rs9268480	19915573	Asano K	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"376 Japanese ancestry cases, 934 Japanese ancestry controls"	EAS	6p21.32	6	32396067	1.82	C	3.00E-06	C	T	0.8328	0.6873	0.8859	0.7266	0.7832	0.78316	C	ANC	GI_liver	1310
rs9268853	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	6p21.32	6	32461866	1.4	T	1.00E-55	T	C	0.8071	0.5893	0.6875	0.6789	0.7025	0.69306	T	ANC	GI_liver	26405
rs9268877	18836448	Franke A	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,167 European ancestry cases, 777 European ancestry controls"	EUR	6p21.32	6	32463370	1.45	A	6.00E-18	A	G	0.4213	0.3127	0.4276	0.4334	0.4438	0.40776	G	DER	GI_liver	1944
rs9268923	20228798	Franke A	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,043 European ancestry cases, 1,703 European ancestry controls"	EUR	6p21.32	6	32465058	1.45	C	4.00E-15	C	T	0.8071	0.5893	0.6885	0.6789	0.7025	0.69326	C	ANC	GI_liver	2746
rs9271366	23850713	Yang SK	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"532 Korean ancestry cases, 733 Korean ancestry controls"	EAS	6p21.32	6	32619077	1.66	A	5.00E-12	G	A	0.8737	0.9337	0.8383	0.8777	0.7434	0.85336	A	ANC	GI_liver	1265
rs9271366	21699788	Okada Y	Ulcerative colitis or Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases"	EAS	6p21.32	6	32619077	4.44	G	2.00E-70	G	A	0.1263	0.0663	0.1617	0.1223	0.2566	0.14664	A	DER	GI_liver	744
rs9271366	23511034	Yang SK	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"388 Korean ancestry cases, 739 Korean ancestry controls"	EAS	6p21.32	6	32619077	2.1	G	1.00E-18	G	A	0.1263	0.0663	0.1617	0.1223	0.2566	0.14664	A	DER	GI_liver	1127
rs9286879	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	1q24.3	1	172893094	1.125	G	6.00E-22	A	G	0.3646	0.5303	0.879	0.2346	0.4151	0.48472	A	DER	GI_liver	34366
rs9292777	22412388	Kenny EE	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls"	EUR	5p13.1	5	40437846	1.37	T	2.00E-11	C	T	0.6967	0.4524	0.1359	0.5875	0.4479	0.46408	C	DER	GI_liver	2994
rs9303277	20639880	Liu X	Primary biliary cirrhosis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"453 European ancestry cases, 945 European ancestry controls,"	EUR	"17q12, 17q21.1"	17	39820216	1.38	T	2.00E-09	C	T	0.6263	0.4164	0.3006	0.5159	0.3436	0.44056	T	ANC	GI_liver	1398
rs9348876	22936669	Julia A	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,277 European ancestry cases, 1,488 European ancestry controls"	EUR	6p21.33	6	31607499	1.41	T	3.00E-06	C	T	0.0204	0.072	0.3046	0.0805	0.2382	0.14314	T	ANC	GI_liver	2765
rs941823	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	13q14.11	13	40439840	1.12	C	4.00E-12	T	C	0.7988	0.7954	0.8353	0.7356	0.9581	0.82464	T	DER	GI_liver	26405
rs943072	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	6p21.1	6	43828231	1.15	G	2.00E-10	G	T	0.3313	0.2536	0.1448	0.1093	0.0736	0.18252	G	ANC	GI_liver	26405
rs9469220	17554300	WTCCC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,748 European ancestry cases, 2,938 European ancestry controls"	EUR	6p21.32	6	32690533	1.14	A	2.00E-06	G	A	0.6044	0.6023	0.6508	0.5408	0.6094	0.60154	A	ANC	GI_liver	4686
rs9491697	23128233	Jostins L	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	6q22.33	6	127134977	1.077	G	4.00E-10	A	G	0.2897	0.4611	0.506	0.4205	0.3988	0.41522	A	DER	GI_liver	34366
rs9548988	19915572	Barrett JC	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"2,361 European ancestry cases, 5,417 European ancestry controls"	EUR	13q14.11	13	39931373	1.1	T	3.00E-07	C	T	0.4032	0.304	0.4236	0.4821	0.5511	0.4328	T	ANC	GI_liver	7778
rs9822268	21297633	Anderson CA	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"6,687 European ancestry cases, 19,718 European ancestry controls"	EUR	3p21.31	3	49682296	1.21	A	2.00E-17	G	A	0.2632	0.1729	0.0565	0.3241	0.1994	0.20322	G	DER	GI_liver	26405
rs9847710	23128233	Jostins L	Ulcerative colitis	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls"	EUR	3p21.1	3	53028645	1.064	C	1.00E-08	T	C	0.5363	0.5144	0.6151	0.4115	0.6677	0.549	C	ANC	GI_liver	34366
rs9858542	17554300	WTCCC	Crohn's disease	"gastrointestinal_or_liver_disease, allergy_autoimmune_immune"	"1,748 European ancestry cases, 2,938 European ancestry controls"	EUR	3p21.31	3	49664550	1.09	A	4.00E-08	G	A	0.2171	0.17	0.0516	0.3241	0.1994	0.19244	G	DER	GI_liver	4686
rs10182181	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	2p23.3	2	24927427	1.08	G	1.00E-17	A	G	0.9123	0.3804	0.4385	0.4662	0.4755	0.53458	G	ANC	metabolic	204498
rs10189761	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	2p25.3	2	646364	1.24	A	6.00E-24	T	A	0.7852	0.8545	0.9127	0.826	0.8691	0.8495	T	DER	metabolic	204498
rs10229583	23532257	Ma RC	Type 2 diabetes	metabolism_or_weight	"684 Han Chinese ancestry cases, 955 Han Chinese ancestry controls"	EAS	7q32.1	7	127606849	1.14	G	2.00E-10	G	A	0.767	0.8127	0.8532	0.7624	0.6585	0.77076	G	ANC	metabolic	1639
rs10231619	25102180	Ng MC	Type 2 diabetes	metabolism_or_weight	"8,284 African American cases, 15,543 African American controls"	AFR	7p14.1	7	43280995	1.13	T	4.00E-06	C	T	0.8411	0.2767	0.2966	0.1759	0.4243	0.40292	T	ANC	metabolic	23827
rs10423928	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	19q13.32	19	45679046	1.16	T	4.00E-13	T	A	0.8404	0.8646	0.7927	0.7863	0.865	0.8298	T	ANC	metabolic	204498
rs10433903	19553259	Cotsapas C	Obesity (extreme)	metabolism_or_weight	"775 European ancestry cases, 3,197 European ancestry controls"	EUR	4q26	4	117171981	1.33	T	3.00E-06	T	C	0.7118	0.6571	0.4563	0.667	0.5613	0.6107	T	ANC	metabolic	3972
rs10460009	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	18p11.31	18	2948031	1.35	C	9.00E-06	C	T	0.9554	0.8069	0.5258	0.8897	0.7546	0.78648	C	ANC	metabolic	8135
rs10461617	23209189	Tabassum R	Type 2 diabetes	metabolism_or_weight	"1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls"	MIX	5q11.2	5	56808481	1.17	A	4.00E-06	A	G	0.4017	0.3588	0.4296	0.1938	0.2168	0.32014	G	DER	metabolic	2128
rs1048466	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	12p13.33	12	442384	1.22	G	8.00E-08	G	A	0.8124	0.8184	0.6498	0.7584	0.774	0.7626	G	ANC	metabolic	6889
rs1048886	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	6q13	6	70579486	1.54	G	3.00E-08	A	G	0.3192	0.2161	0.0833	0.175	0.1636	0.19144	A	DER	metabolic	8135
rs10519201	22911880	Boraska V	Eating disorders	metabolism_or_weight	"Up to 2,567 European ancestry individuals"	EUR	15q21.1	15	48929394	1.158	T	6.00E-06	G	T	0.0197	0.2608	0.2222	0.1342	0.319	0.19118	G	DER	metabolic	2567
rs10741243	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	10q26.3	10	131149699	1.75	G	5.00E-06	C	G	0.5484	0.8631	0.8879	0.9284	0.9294	0.83144	G	ANC	metabolic	8135
rs10811661	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	9p21.3	9	22134095	1.18	T	1.00E-27	T	C	0.9546	0.8761	0.5645	0.832	0.8681	0.81906	C	DER	metabolic	110452
rs10814916	22961080	Li H	Type 2 diabetes	metabolism_or_weight	"1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls"	EAS	9p24.2	9	4293150	1.11	C	6.00E-12	A	C	0.7012	0.549	0.4921	0.5398	0.5787	0.57216	A	DER	metabolic	3712
rs10830963	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	EUR	11q14.3	11	92975544	1.11	G	2.00E-07	C	G	0.0272	0.1931	0.4226	0.2883	0.4264	0.27152	C	DER	metabolic	110452
rs10842994	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	12p11.22	12	27812217	1.09	C	8.00E-06	C	T	0.9864	0.8646	0.7946	0.7922	0.8333	0.85422	T	DER	metabolic	110452
rs10871777	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	18q21.32	18	60184530	1.1	G	2.00E-27	A	G	0.292	0.1369	0.1865	0.2465	0.3211	0.2366	A	DER	metabolic	204498
rs10886471	22961080	Li H	Type 2 diabetes	metabolism_or_weight	"1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls"	EAS	10q26.11	10	119389891	1.12	C	7.00E-09	C	T	0.8729	0.5504	0.7778	0.5229	0.6207	0.66894	C	ANC	metabolic	3712
rs10906115	20862305	Shu XO	Type 2 diabetes	metabolism_or_weight	"1,019 Chinese ancestry cases, 1,710 Chinese ancestry controls"	EAS	10p13	10	12272998	1.13	A	1.00E-08	A	G	0.7012	0.5965	0.5972	0.6282	0.5143	0.60748	G	DER	metabolic	2729
rs10923931	18372903	Zeggini E	Type 2 diabetes	metabolism_or_weight	"4,549 European ancestry cases, 5,579 European ancestry controls"	EUR	1p12	1	119975336	1.13	T	4.00E-08	G	T	0.3775	0.1196	0.0476	0.1093	0.227	0.1762	G	DER	metabolic	10128
rs10938397	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	4p12	4	45180510	1.12	G	3.00E-34	A	G	0.2042	0.3963	0.3026	0.4205	0.3681	0.33834	A	DER	metabolic	204498
rs10946398	17463249	Zeggini E	Type 2 diabetes	metabolism_or_weight	"1,924 European ancestry cases, 2,938 European ancestry controls"	EUR	6p22.3	6	20660803	1.16	C	1.00E-08	A	C	0.6316	0.3184	0.4008	0.3181	0.2556	0.3849	C	ANC	metabolic	4862
rs10968576	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	9p21.1	9	28414341	1.07	G	3.00E-08	A	G	0.1422	0.2536	0.1835	0.3022	0.1708	0.21046	A	DER	metabolic	204498
rs10999409	19553259	Cotsapas C	Obesity (extreme)	metabolism_or_weight	"775 European ancestry cases, 3,197 European ancestry controls"	EUR	10q22.1	10	70572684	1.3	T	5.00E-06	T	C	0.764	0.5908	0.2569	0.4264	0.4939	0.5064	C	DER	metabolic	3972
rs11042023	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	11p15.4	11	8640969	1.07	C	1.00E-11	T	C	0.5166	0.5836	0.4028	0.6302	0.5133	0.5293	T	DER	metabolic	204498
rs11043007	25102180	Ng MC	Type 2 diabetes	metabolism_or_weight	"8,284 African American cases, 15,543 African American controls"	AFR	11p15.5	11	2183058	1.19	G	1.00E-07	G	T	0.9085	0.5591	0.246	0.3897	0.32	0.48466	G	ANC	metabolic	23827
rs11109072	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	12q23.1	12	97507492	1.67	A	4.00E-09	C	A	0.3011	0.1326	0.2659	0.0378	0.1176	0.171	C	DER	metabolic	6889
rs1111875	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	10q23.33	10	92703125	1.15	C	3.00E-19	C	T	0.8162	0.621	0.2837	0.5755	0.3558	0.53044	T	DER	metabolic	110452
rs11152213	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	18q21.32	18	60185715	1.19	C	3.00E-22	A	C	0.2526	0.134	0.1865	0.2465	0.32	0.22792	C	ANC	metabolic	204498
rs11165354	23209189	Tabassum R	Type 2 diabetes	metabolism_or_weight	"1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls"	MIX	1p22.1	1	91728765	1.17	A	4.00E-06	C	A	0.27	0.6239	0.5427	0.6252	0.8088	0.57412	A	ANC	metabolic	2128
rs11208659	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	1p31.3	1	65513597	1.42	C	2.00E-09	T	C	0.4009	0.1052	0.0694	0.0815	0.2178	0.17496	T	DER	metabolic	6889
rs1121980	18159244	Hinney A	Obesity (early onset extreme)	metabolism_or_weight	"487 European ancestry cases, 442 European ancestry controls"	EUR	"16q12.2, 16q12.2[rs1121980]; 16q12.2[rs9930333]"	16	53775335	1.66	A	1.00E-07	G	A	0.4667	0.2896	0.2113	0.4433	0.3865	0.35948	A	ANC	metabolic	929
rs11257655	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	10p13	10	12265895	1.06	T	3.00E-09	C	T	0.2413	0.2622	0.5397	0.2266	0.2403	0.30202	C	DER	metabolic	110452
rs1153188	18372903	Zeggini E	Type 2 diabetes	metabolism_or_weight	"4,549 European ancestry cases, 5,579 European ancestry controls"	EUR	12q13.2	12	54705212	1.08	A	2.00E-07	T	A	0.7504	0.8141	0.9732	0.7356	0.8354	0.82174	A	ANC	metabolic	10128
rs11639988	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	16p12.3	16	19933041	1.15	A	4.00E-09	A	G	0.736	0.9164	1	0.8678	0.955	0.89504	A	ANC	metabolic	204498
rs11677370	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	2p25.3	2	3793830	1.35	T	3.00E-06	T	A	0.7307	0.6441	0.6438	0.667	0.4192	0.62096	T	ANC	metabolic	8135
rs11698685	23028342	Sandholm N	Type 1 diabetes nephropathy	metabolism_or_weight	"Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy"	EUR	20q13.33	20	60320788	1.27	G	1.00E-06	G	A	0.6188	0.7464	0.8938	0.6779	0.7894	0.74526	A	DER	metabolic	6233
rs11717195	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	3q21.1	3	123363551	1.09	T	2.00E-08	T	C	0.9123	0.6974	0.996	0.826	0.8108	0.8485	T	ANC	metabolic	110452
rs11723864	23028342	Sandholm N	Type 1 diabetes nephropathy	metabolism_or_weight	"Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy"	EUR	4q34.1	4	173653255	1.51	G	7.00E-07	C	G	0.0537	0.0749	0.0665	0.0845	0.0951	0.07494	C	DER	metabolic	6233
rs11787792	23945395	Hara K	Type 2 diabetes	metabolism_or_weight	"5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls"	EAS	9q34.3	9	136357696	1.15	A	2.00E-10	G	A	0.792	0.5317	0.9444	0.673	0.7331	0.73484	G	DER	metabolic	26805
rs12027542	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	1q42.2	1	233204408	1.41	A	4.00E-07	A	G	0.9675	0.8329	0.6617	0.9274	0.9591	0.86972	A	ANC	metabolic	8135
rs12295638	19553259	Cotsapas C	Obesity (extreme)	metabolism_or_weight	"775 European ancestry cases, 3,197 European ancestry controls"	EUR	11p14.2	11	26583784	1.49	C	4.00E-06	T	C	0.1044	0.085	0.3373	0.0915	0.0838	0.1404	T	DER	metabolic	3972
rs12304921	17554300	WTCCC	Type 2 diabetes	metabolism_or_weight	"1,924 European ancestry cases, 2,938 European ancestry controls"	EUR	12q13.12	12	50963759	2.5	G	7.00E-06	A	G	0.1793	0.1585	0.494	0.163	0.316	0.26216	G	ANC	metabolic	4862
rs12408810	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	1p21.1	1	106098321	1.25	C	9.00E-06	C	T	0.7534	0.7233	0.6062	0.8479	0.8098	0.74812	T	DER	metabolic	6889
rs12427353	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	12q24.31	12	120989098	1.12	G	4.00E-06	G	C	0.9887	0.8905	0.999	0.7992	0.9806	0.9316	G	ANC	metabolic	110452
rs12437854	23028342	Sandholm N	Type 1 diabetes nephropathy	metabolism_or_weight	"Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy"	EUR	15q26.1	15	93598604	1.8	G	2.00E-09	T	G	0.1793	0.1527	0.2153	0.0785	0.1268	0.15052	T	DER	metabolic	6233
rs12446554	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	16p12.3	16	19923751	1.07	G	4.00E-12	G	T	0.9175	0.9352	1	0.8698	0.955	0.9355	G	ANC	metabolic	204498
rs12446632	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	16p12.3	16	19924067	1.09	G	2.00E-10	G	A	0.9175	0.9352	1	0.8698	0.955	0.9355	G	ANC	metabolic	204498
rs12463617	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	2p25.3	2	629244	1.42	C	2.00E-13	A	C	0.7655	0.8602	0.9137	0.827	0.8517	0.84362	A	DER	metabolic	6889
rs12518099	19734900	Rung J	Type 2 diabetes and other traits	metabolism_or_weight	"679 European ancestry cases, 697 European ancestry controls"	EUR	5q14.3	5	90250292	1.16	G	7.00E-07	A	G	0.2179	0.2651	0.3948	0.2594	0.3303	0.2935	A	DER	metabolic	1376
rs12541335	23505323	Weissglas-Volkov D	Hypertriglyceridemia	metabolism_or_weight	"1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls"	AMR	8p21.3	8	22230919	1.23	G	7.00E-06	A	G	0.1551	0.3357	0.0377	0.4254	0.3344	0.25766	G	ANC	metabolic	2240
rs12571751	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	10q22.3	10	79182874	1.09	A	2.00E-10	A	G	0.525	0.4625	0.5685	0.5497	0.5481	0.53076	G	DER	metabolic	110452
rs1260326	20657596	Johansen CT	Hypertriglyceridemia	metabolism_or_weight	"463 European ancestry cases, 1,197 European ancestry controls"	EUR	2p23.3	2	27508073	1.75	T	7.00E-09	T	C	0.0938	0.3617	0.4812	0.4105	0.2004	0.30952	C	DER	metabolic	1660
rs12613372	25102180	Ng MC	Type 2 diabetes	metabolism_or_weight	"8,284 African American cases, 15,543 African American controls"	AFR	2p23.1	2	30845153	1.24	G	2.00E-07	C	G	0.0492	0.0893	0.2837	0.163	0.1002	0.13708	C	DER	metabolic	23827
rs12635698	19553259	Cotsapas C	Obesity (extreme)	metabolism_or_weight	"775 European ancestry cases, 3,197 European ancestry controls"	EUR	3p24.3	3	16366982	1.41	C	5.00E-06	T	C	0.5772	0.1628	0.0337	0.1312	0.1462	0.21022	T	DER	metabolic	3972
rs12779790	18372903	Zeggini E	Type 2 diabetes	metabolism_or_weight	"4,549 European ancestry cases, 5,579 European ancestry controls"	EUR	10p13	10	12286011	1.11	G	1.00E-10	A	G	0.1165	0.1571	0.1994	0.2038	0.1247	0.1603	A	DER	metabolic	10128
rs12899811	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	15q26.1	15	91000846	1.09	G	6.00E-07	A	G	0.6702	0.5965	0.9702	0.3062	0.6115	0.63092	G	ANC	metabolic	110452
rs12970134	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	EUR	18q21.32	18	60217517	1.08	A	3.00E-08	G	A	0.1225	0.1686	0.1726	0.2674	0.3241	0.21104	G	DER	metabolic	110452
rs13041126	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	20q13.2	20	52476457	1.06	T	2.00E-08	T	C	0.8154	0.6988	0.7282	0.7296	0.6861	0.73162	T	ANC	metabolic	204498
rs13045180	23028342	Sandholm N	Type 1 diabetes nephropathy	metabolism_or_weight	"Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy"	EUR	20q11.21	20	32943738	1.28	T	9.00E-06	C	T	0.0242	0.2349	0.0248	0.2058	0.2321	0.14436	C	DER	metabolic	6233
rs13078807	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	3p12.1	3	85835000	1.06	G	3.00E-11	A	G	0.0378	0.1326	0.001	0.2087	0.0879	0.0936	A	DER	metabolic	204498
rs13130484	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	4p12	4	45173674	1.08	T	4.00E-28	C	T	0.2042	0.3963	0.3016	0.4185	0.3722	0.33856	C	DER	metabolic	204498
rs13266634	19734900	Rung J	Type 2 diabetes and other traits	metabolism_or_weight	"679 European ancestry cases, 697 European ancestry controls"	EUR	8q24.11	8	117172544	1.16	C	8.00E-08	C	T	0.9259	0.7334	0.5427	0.7167	0.7454	0.73282	C	ANC	metabolic	1376
rs13266634	19401414	Takeuchi F	Type 2 diabetes	metabolism_or_weight	"519 Japanese ancestry cases, 503 Japanese ancestry controls"	EAS	8q24.11	8	117172544	1.22	C	2.00E-14	C	T	0.9259	0.7334	0.5427	0.7167	0.7454	0.73282	C	ANC	metabolic	1022
rs1359790	20862305	Shu XO	Type 2 diabetes	metabolism_or_weight	"1,019 Chinese ancestry cases, 1,710 Chinese ancestry controls"	EAS	13q31.1	13	80143021	1.15	G	6.00E-09	G	A	0.9198	0.6844	0.7222	0.7326	0.8425	0.7803	G	ANC	metabolic	2729
rs1412239	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	9p21.1	9	28425517	1.11	G	2.00E-10	C	G	0.143	0.2536	0.1815	0.3042	0.1728	0.21102	C	DER	metabolic	204498
rs1421085	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	16q12.2	16	53767042	1.44	C	3.00E-28	T	C	0.056	0.2392	0.1687	0.4324	0.3067	0.2406	T	DER	metabolic	6889
rs1421085	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	16q12.2	16	53767042	1.45	C	6.00E-39	T	C	0.056	0.2392	0.1687	0.4324	0.3067	0.2406	T	DER	metabolic	204498
rs1424233	19151714	Meyre D	Obesity	metabolism_or_weight	"695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls"	EUR	16q23.2	16	79648854	1.39	T	2.00E-08	T	C	0.7148	0.6484	0.6359	0.4712	0.6922	0.6325	T	ANC	metabolic	2796
rs1435703	19553259	Cotsapas C	Obesity (extreme)	metabolism_or_weight	"775 European ancestry cases, 3,197 European ancestry controls"	EUR	3p24.2	3	25518740	1.66	T	4.00E-06	G	T	0.441	0.0865	0	0.0656	0.0051	0.11964	T	ANC	metabolic	3972
rs1436953	21799836	Cui B	Type 2 diabetes	metabolism_or_weight	"793 Han Chinese ancestry cases, 806 Han Chinese ancestry controls"	EAS	15q22.2	15	62121815	1.14	C	8.00E-06	C	T	0.2761	0.4265	0.6518	0.4443	0.544	0.46854	C	ANC	metabolic	1599
rs1436955	20862305	Shu XO	Type 2 diabetes	metabolism_or_weight	"1,019 Chinese ancestry cases, 1,710 Chinese ancestry controls"	EAS	15q22.2	15	62112183	1.13	C	7.00E-07	C	T	0.6452	0.5793	0.7579	0.7247	0.7423	0.68988	A	DER	metabolic	2729
rs1470579	23300278	Saxena R	Type 2 diabetes	metabolism_or_weight	"842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls"	SAS	3q27.2	3	185811292	1.08	C	2.00E-19	A	C	0.848	0.3026	0.2639	0.3042	0.4571	0.43516	C	ANC	metabolic	1616
rs1470579	23300278	Saxena R	Type 2 diabetes	metabolism_or_weight	"842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls"	SAS	3q27.2	3	185811292	1.136363636	A	4.00E-07	A	C	0.152	0.6974	0.7361	0.6958	0.5429	0.56484	C	DER	metabolic	1616
rs1495377	17554300	WTCCC	Type 2 diabetes	metabolism_or_weight	"1,924 European ancestry cases, 2,938 European ancestry controls"	EUR	12q21.1	12	71183321	1.28	G	7.00E-06	G	C	0.1793	0.2911	0.2808	0.5159	0.3793	0.32928	C	DER	metabolic	4862
rs1514174	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	1p31.1	1	74527379	1.04	C	1.00E-08	C	T	0.761	0.6095	0.8522	0.4503	0.589	0.6524	T	DER	metabolic	204498
rs1514177	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	1p31.1	1	74525718	1.06	C	5.00E-09	C	G	0.6415	0.585	0.7728	0.4284	0.5184	0.58922	G	DER	metabolic	204498
rs1516725	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	3q27.2	3	186106215	1.15	C	3.00E-09	T	C	0.8321	0.915	0.9365	0.8618	0.8753	0.88414	C	ANC	metabolic	204498
rs1535500	22158537	Cho YS	Type 2 diabetes	metabolism_or_weight	"5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls"	EAS	6p21.2	6	39316274	1.08	T	2.00E-08	G	T	0.9002	0.4597	0.4673	0.493	0.4836	0.56076	G	DER	metabolic	18817
rs1552224	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	11q13.4	11	72722053	1.13	A	1.00E-07	A	C	0.9924	0.9107	0.9187	0.8499	0.7996	0.89426	A	ANC	metabolic	110452
rs1557305	22911880	Boraska V	Eating disorders	metabolism_or_weight	"Up to 2,567 European ancestry individuals"	EUR	18p11.31	18	4721359	1.11	C	5.00E-06	C	T	0.8101	0.572	0.497	0.6243	0.5092	0.60252	C	ANC	metabolic	2567
rs1558902	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	16q12.2	16	53769662	1.14	A	2.00E-81	T	A	0.056	0.2392	0.1657	0.4324	0.3067	0.24	T	DER	metabolic	204498
rs1631486	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	18q21.2	18	55359126	1.18	A	4.00E-06	G	A	0.8404	0.4092	0.5327	0.3668	0.3446	0.49874	A	ANC	metabolic	6889
rs163182	21799836	Cui B	Type 2 diabetes	metabolism_or_weight	"793 Han Chinese ancestry cases, 806 Han Chinese ancestry controls"	EAS	11p15.4	11	2822986	1.28	C	2.00E-17	G	C	0.3139	0.4323	0.3542	0.4692	0.4611	0.40614	G	DER	metabolic	1599
rs163184	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	11p15.4	11	2825839	1.09	G	2.00E-14	T	G	0.1384	0.4049	0.4206	0.493	0.4928	0.38994	T	DER	metabolic	110452
rs16861329	21874001	Kooner JS	Type 2 diabetes	metabolism_or_weight	"5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls"	SAS	3q27.3	3	186948673	1.09	C	3.00E-08	C	T	0.9584	0.7767	0.7619	0.8668	0.7515	0.82306	C	ANC	metabolic	20019
rs16862964	24465431	Ma RC	Type 2 diabetes (young onset) and obesity	metabolism_or_weight	"99 Chinese ancestry cases, 101 Chinese ancestry controls"	EAS	3q27.3	3	188074923	2.59	C	7.00E-06	T	C	0.525	0.2334	0.3948	0.3111	0.3456	0.36198	T	DER	metabolic	200
rs16923476	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	10p12.2	10	23569282	1.78	A	1.00E-07	G	A	0.2821	0.1081	0.004	0.0249	0.0961	0.10304	G	DER	metabolic	6889
rs16955379	22158537	Cho YS	Type 2 diabetes	metabolism_or_weight	"5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls"	EAS	16q23.2	16	81455768	1.08	C	3.00E-07	C	T	0.9138	0.9971	0.7361	0.992	0.9806	0.92392	C	ANC	metabolic	18817
rs17024258	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	1p13.3	1	109604699	1.25	T	9.00E-12	C	T	0.0817	0.0115	0	0.0338	0.0082	0.02704	C	DER	metabolic	204498
rs17025867	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	2p22.1	2	40351419	1.81	A	2.00E-07	G	A	0.0045	0.0058	0.001	0.0109	0.045	0.01344	G	DER	metabolic	6889
rs17030795	24514567	Boraska V	Anorexia nervosa	metabolism_or_weight	"2,907 European ancestry cases, 14,860 European ancestry controls"	EUR	4q24	4	101126919	1.149	G	6.00E-06	A	G	0.1437	0.4352	0.3075	0.2008	0.2935	0.27614	A	DER	metabolic	17767
rs17036101	18372903	Zeggini E	Type 2 diabetes	metabolism_or_weight	"4,549 European ancestry cases, 5,579 European ancestry controls"	EUR	3p25.2	3	12236345	1.15	G	2.00E-07	G	A	0.9735	0.9827	0.9772	0.9533	0.9489	0.96712	A	DER	metabolic	10128
rs17045328	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	1q32.2	1	207478831	1.38	G	7.00E-06	A	G	0.0272	0.0144	0.2927	0.0219	0.0971	0.09066	A	DER	metabolic	8135
rs17053082	23300278	Saxena R	Type 2 diabetes	metabolism_or_weight	"842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls"	SAS	5q33.2	5	155967220	1.49	T	4.00E-07	C	T	0.0802	0.049	0.0278	0.0487	0.1002	0.06118	C	DER	metabolic	1616
rs17168486	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	EAS	7p21.2	7	14858657	1.13	T	3.00E-07	C	T	0.0794	0.3862	0.4633	0.166	0.363	0.29158	C	DER	metabolic	110452
rs17359493	25102180	Ng MC	Type 2 diabetes	metabolism_or_weight	"8,284 African American cases, 15,543 African American controls"	AFR	8q22.1	8	94844683	1.13	G	1.00E-07	A	G	0.2466	0.0937	0.0506	0.172	0.1309	0.13876	G	ANC	metabolic	23827
rs17381664	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	1p31.1	1	77582646	1.09	C	3.00E-08	T	C	0.0431	0.4452	0.004	0.328	0.2352	0.2111	T	DER	metabolic	204498
rs17584499	20174558	Tsai FJ	Type 2 diabetes	metabolism_or_weight	"995 Han Chinese ancestry cases, 894 Han Chinese ancestry controls"	EAS	9p24.1	9	8879118	1.57	T	9.00E-10	C	T	0.0265	0.2075	0.1389	0.1839	0.2423	0.15982	C	DER	metabolic	1889
rs17782313	19151714	Meyre D	Obesity	metabolism_or_weight	"695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls"	EUR	18q21.32	18	60183864	1.26	C	4.00E-09	T	C	0.2776	0.134	0.1865	0.2396	0.32	0.23154	T	DER	metabolic	2796
rs17791513	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	9q21.31	9	79290675	1.21	A	3.00E-08	A	G	0.9713	0.8415	0.9504	0.9394	0.8436	0.90924	A	ANC	metabolic	110452
rs17797882	22158537	Cho YS	Type 2 diabetes	metabolism_or_weight	"5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls"	MIX	16q23.2	16	79373021	1.08	T	9.00E-07	C	T	0.0605	0.0677	0.1905	0.0169	0.0685	0.08082	C	DER	metabolic	18817
rs1800437	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	19q13.32	19	45678134	1.1	G	3.00E-14	G	C	0.8767	0.8732	0.7927	0.7863	0.865	0.83878	G	ANC	metabolic	204498
rs1801282	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	EUR	3p25.2	3	12351626	1.16	C	6.00E-10	C	G	0.9947	0.8833	0.9742	0.8797	0.8804	0.92246	C	ANC	metabolic	110452
rs1802295	21874001	Kooner JS	Type 2 diabetes	metabolism_or_weight	"5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls"	SAS	10q22.1	10	69171718	1.08	T	4.00E-08	C	T	0.0197	0.2464	0.1141	0.2893	0.2556	0.18502	C	DER	metabolic	20019
rs1805081	19151714	Meyre D	Obesity	metabolism_or_weight	"695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls"	EUR	18q11.2	18	23560468	1.41	T	8.00E-08	T	C	0.9803	0.7363	0.744	0.6163	0.7526	0.7659	T	ANC	metabolic	2796
rs1873747	25483131	Ghassibe-Sabbagh M	Type 2 diabetes	metabolism_or_weight	"1,384 Lebanese ancestry cases, 1,902 Lebanese ancestry controls"	SAS	9q22.31	9	91633578	1.41	T	4.00E-06	A	T	0.1944	0.1182	0.0933	0.1292	0.1319	0.1334	A	DER	metabolic	3286
rs1898111	22911880	Boraska V	Eating disorders	metabolism_or_weight	"Up to 2,567 European ancestry individuals"	EUR	15q21.1	15	47600101	1.15	A	8.00E-06	G	A	0.3472	0.7421	0.7272	0.838	0.7178	0.67446	G	DER	metabolic	2567
rs1957894	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	14q23.1	14	61441393	1.5	T	3.00E-10	T	G	0.7723	0.1326	0.4087	0.0825	0.1115	0.30152	T	ANC	metabolic	6889
rs1993709	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	1p31.1	1	72372846	1.38	G	5.00E-13	A	G	0.8691	0.9193	0.9841	0.8201	0.9448	0.90748	G	ANC	metabolic	6889
rs2028299	21874001	Kooner JS	Type 2 diabetes	metabolism_or_weight	"5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls"	SAS	15q26.1	15	89831025	1.1	C	2.00E-11	C	A	0.2935	0.2233	0.2063	0.2674	0.3405	0.2662	A	DER	metabolic	20019
rs2030323	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	11p14.1	11	27706992	1.12	C	3.00E-22	A	C	0.9531	0.8285	0.5099	0.7654	0.7045	0.75228	A	DER	metabolic	204498
rs2063640	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	3q12.3	3	102484201	1.23	A	3.00E-06	C	A	0.0416	0.2133	0.2877	0.0944	0.1002	0.14744	C	DER	metabolic	8135
rs2075423	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	1q32.3	1	213981376	1.08	G	2.00E-06	G	T	0.6006	0.7032	0.8621	0.6292	0.7679	0.7126	G	ANC	metabolic	110452
rs2112347	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	5q13.3	5	75719417	1.09	T	4.00E-09	T	G	0.4766	0.5879	0.4633	0.6322	0.4243	0.51686	G	DER	metabolic	204498
rs2116830	21708048	Jiao H	Obesity	metabolism_or_weight	"164 European ancestry morbidly obese  individuals, 163 European ancestry lean individuals"	EUR	10q22.3	10	76886778	1.26	G	3.00E-10	G	T	0.969	0.8775	0.999	0.8032	0.9724	0.92422	G	ANC	metabolic	327
rs218361	22911880	Boraska V	Eating disorders	metabolism_or_weight	"Up to 2,567 European ancestry individuals"	EUR	8q23.3	8	115098496	1.061	G	7.00E-06	G	A	0.7262	0.4035	0.4335	0.4185	0.5971	0.51576	G	ANC	metabolic	2567
rs2206277	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	6p12.3	6	50830813	1.12	T	5.00E-22	C	T	0.1271	0.3444	0.2341	0.1819	0.2393	0.22536	C	DER	metabolic	204498
rs2207139	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	6p12.3	6	50877777	1.2	G	3.00E-19	A	G	0.0787	0.3098	0.1508	0.164	0.2423	0.18912	A	DER	metabolic	204498
rs2237892	18711367	Yasuda K	Type 2 diabetes	metabolism_or_weight	"187 Japanese ancestry cases, 1,504 Japanese ancestry controls"	EAS	11p15.4	11	2818521	1.45	C	2.00E-42	C	T	0.9107	0.7219	0.6448	0.9374	0.9857	0.8401	C	ANC	metabolic	1691
rs2237895	20174558	Tsai FJ	Type 2 diabetes	metabolism_or_weight	"995 Han Chinese ancestry cases, 894 Han Chinese ancestry controls"	EAS	11p15.4	11	2835964	1.29	C	1.00E-09	A	C	0.1452	0.4049	0.3304	0.4195	0.3978	0.33956	A	DER	metabolic	1889
rs2237897	18711366	Unoki H	Type 2 diabetes	metabolism_or_weight	"194 Japanese ancestry cases, 1,558 Japanese ancestry controls"	EAS	11p15.4	11	2837316	1.33	C	1.00E-16	C	T	0.9191	0.7277	0.6468	0.9533	0.9867	0.84672	C	ANC	metabolic	1752
rs2261181	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	12q14.3	12	65818538	1.16	T	4.00E-08	C	T	0.2315	0.0836	0.1032	0.1173	0.1973	0.14658	C	DER	metabolic	110452
rs2274459	19553259	Cotsapas C	Obesity (extreme)	metabolism_or_weight	"775 European ancestry cases, 3,197 European ancestry controls"	EUR	6p21.31	6	33794465	1.38	A	6.00E-06	G	A	0.0113	0.1326	0.0516	0.1531	0.0613	0.08198	G	DER	metabolic	3972
rs2283228	25102180	Ng MC	Type 2 diabetes	metabolism_or_weight	"8,284 African American cases, 15,543 African American controls"	EUR	11p15.4	11	2828300	1.19	A	5.00E-13	A	C	0.9077	0.7161	0.62	0.9324	0.9703	0.8293	A	ANC	metabolic	23827
rs2307111	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	5q13.3	5	75707853	1.07	T	3.00E-12	T	C	0.0756	0.5202	0.4653	0.6044	0.3957	0.41224	C	DER	metabolic	204498
rs231356	25102180	Ng MC	Type 2 diabetes	metabolism_or_weight	"8,284 African American cases, 15,543 African American controls"	AFR	11p15.5	11	2684113	1.09	T	4.00E-08	A	T	0.2458	0.4308	0.7867	0.2952	0.4836	0.44842	A	DER	metabolic	23827
rs2358944	21150874	McDonough CW	Type 2 diabetes nephropathy	metabolism_or_weight	"965 African American cases, 1,029 African American controls"	AFR	12q14.3	12	65723778	1.33	G	4.00E-06	G	A	0.8646	0.3559	0.6944	0.1491	0.3773	0.48826	G	ANC	metabolic	1994
rs2370983	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	14q31.1	14	79437033	1.04	A	3.00E-09	G	A	0.8986	0.7277	0.4345	0.659	0.6309	0.67014	A	ANC	metabolic	204498
rs2383208	19401414	Takeuchi F	Type 2 diabetes	metabolism_or_weight	"519 Japanese ancestry cases, 503 Japanese ancestry controls"	EAS	9p21.3	9	22132077	1.34	A	2.00E-29	A	G	0.8275	0.8602	0.5813	0.827	0.8661	0.79242	G	DER	metabolic	1022
rs243088	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	2p16.1	2	60341610	1.09	T	3.00E-06	A	T	0.5545	0.5591	0.6567	0.4483	0.5123	0.54618	T	ANC	metabolic	110452
rs2531995	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	16p13.3	16	3963466	1.07	T	4.00E-08	C	T	0.1165	0.3631	0.3006	0.6133	0.3517	0.34904	C	DER	metabolic	204498
rs2568958	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	1p31.1	1	72299433	1.06	A	4.00E-16	G	A	0.531	0.7032	0.9335	0.6421	0.6196	0.68588	G	DER	metabolic	204498
rs2722769	22238593	Palmer ND	Type 2 diabetes	metabolism_or_weight	"965 African American cases, 1,029 African American controls"	AFR	"11p15.3, 11p15.4"	11	11206827	1.35	C	2.00E-06	C	G	0.9811	0.7522	0.495	0.5815	0.7137	0.7047	C	ANC	metabolic	1994
rs275856	25483131	Ghassibe-Sabbagh M	Type 2 diabetes	metabolism_or_weight	"1,384 Lebanese ancestry cases, 1,902 Lebanese ancestry controls"	SAS	18q11.2	18	24259188	1.51	T	1.00E-06	A	T	0.2413	0.0692	0.0357	0.1113	0.1339	0.11828	T	ANC	metabolic	3286
rs2833610	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	21q22.11	21	32012873	1.17	A	4.00E-06	A	G	0.3487	0.5519	0.5952	0.4036	0.5061	0.4811	G	DER	metabolic	8135
rs2943640	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	2q36.3	2	226228869	1.09	C	7.00E-09	A	C	0.9493	0.8084	0.9315	0.6362	0.8221	0.8295	C	ANC	metabolic	110452
rs2943641	19734900	Rung J	Type 2 diabetes and other traits	metabolism_or_weight	"679 European ancestry cases, 697 European ancestry controls"	EUR	2q36.3	2	226229029	1.19	C	9.00E-12	T	C	0.6853	0.7666	0.9315	0.6262	0.7699	0.7559	T	DER	metabolic	1376
rs3101336	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	1p31.1	1	72285502	1.21	C	2.00E-08	T	C	0.5303	0.7032	0.9335	0.6412	0.6196	0.68556	T	DER	metabolic	6889
rs3101336	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	1p31.1	1	72285502	1.12	C	1.00E-13	T	C	0.5303	0.7032	0.9335	0.6412	0.6196	0.68556	T	DER	metabolic	204498
rs312457	23945395	Hara K	Type 2 diabetes	metabolism_or_weight	"5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls"	EAS	17p13.1	17	7037074	1.2	G	8.00E-13	G	A	0.1233	0.2478	0.0992	0.0189	0.0041	0.09866	G	ANC	metabolic	26805
rs328506	23300278	Saxena R	Type 2 diabetes	metabolism_or_weight	"842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls"	SAS	20q13.31	20	57454548	1.11	C	2.00E-06	T	C	0.7231	0.7767	0.997	0.7137	0.8671	0.81552	C	ANC	metabolic	1616
rs335810	25102180	Ng MC	Type 2 diabetes	metabolism_or_weight	"8,284 African American cases, 15,543 African American controls"	AFR	15q22.2	15	60076007	1.1	A	7.00E-06	C	A	0.6293	0.9683	1	0.9791	0.9928	0.9139	A	ANC	metabolic	23827
rs343092	25102180	Ng MC	Type 2 diabetes	metabolism_or_weight	"8,284 African American cases, 15,543 African American controls"	AFR	12q14.3	12	65857160	1.14	T	3.00E-12	T	G	0.9448	0.1931	0.3512	0.169	0.4479	0.4212	T	ANC	metabolic	23827
rs34872471	25483131	Ghassibe-Sabbagh M	Type 2 diabetes	metabolism_or_weight	"1,384 Lebanese ancestry cases, 1,902 Lebanese ancestry controls"	SAS	10q25.2	10	112994312	1.32	C	8.00E-08	T	C	0.3116	0.2435	0.0228	0.3151	0.2996	0.23852	T	DER	metabolic	3286
rs35209784	25483131	Ghassibe-Sabbagh M	Type 2 diabetes	metabolism_or_weight	"1,384 Lebanese ancestry cases, 1,902 Lebanese ancestry controls"	SAS	14q23.1	14	59285112	3.57	T	5.00E-06	C	T	0.0015	0.0187	0.002	0.0328	0.0337	0.01774	C	DER	metabolic	3286
rs374748	19553259	Cotsapas C	Obesity (extreme)	metabolism_or_weight	"775 European ancestry cases, 3,197 European ancestry controls"	EUR	5q23.3	5	128363682	1.47	G	4.00E-06	G	A	0.2958	0.1138	0.005	0.1113	0.0675	0.11868	A	DER	metabolic	3972
rs3773506	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	3q23	3	142712158	1.81	C	9.00E-06	G	C	0.1626	0.049	0.121	0.0437	0.0562	0.0865	G	DER	metabolic	8135
rs3782724	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	12p13.31	12	6356915	1.47	G	3.00E-07	A	G	0.5469	0.0922	0.2202	0.0676	0.1902	0.22342	G	ANC	metabolic	6889
rs3786897	22158537	Cho YS	Type 2 diabetes	metabolism_or_weight	"5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls"	EAS	19q13.11	19	33402102	1.1	A	1.00E-08	A	G	0.3918	0.7032	0.5863	0.5974	0.7607	0.60788	G	DER	metabolic	18817
rs3792615	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	4q32.3	4	163611649	1.93	T	9.00E-06	T	C	0.8374	0.8156	0.7937	0.9861	0.953	0.87716	T	ANC	metabolic	8135
rs3802177	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	8q24.11	8	117172786	1.16	G	2.00E-18	G	A	0.9244	0.7334	0.5387	0.7167	0.7464	0.73192	G	ANC	metabolic	110452
rs3842770	25102180	Ng MC	Type 2 diabetes	metabolism_or_weight	"8,284 African American cases, 15,543 African American controls"	AFR	11p15.5	11	2157440	1.14	A	3.00E-08	G	A	0.2466	0.0159	0	0.001	0.001	0.0529	G	DER	metabolic	23827
rs391300	20174558	Tsai FJ	Type 2 diabetes	metabolism_or_weight	"995 Han Chinese ancestry cases, 894 Han Chinese ancestry controls"	EAS	17p13.3	17	2312964	1.28	C	3.00E-09	T	C	0.4554	0.647	0.6786	0.6143	0.4315	0.56536	C	ANC	metabolic	1889
rs3923113	21874001	Kooner JS	Type 2 diabetes	metabolism_or_weight	"5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls"	SAS	2q24.3	2	164645339	1.09	A	1.00E-08	A	C	0.2398	0.7378	0.878	0.5915	0.7894	0.6473	A	ANC	metabolic	20019
rs4402960	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	3q27.2	3	185793899	1.13	T	1.00E-17	G	T	0.5666	0.2839	0.249	0.3042	0.455	0.37174	G	DER	metabolic	110452
rs4430796	22961080	Li H	Type 2 diabetes	metabolism_or_weight	"1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls"	EAS	17q12	17	37738049	1.19	G	2.00E-11	G	A	0.6906	0.3948	0.2768	0.4751	0.2965	0.42676	G	ANC	metabolic	3712
rs4458523	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	4p16.1	4	6288259	1.09	G	2.00E-09	T	G	0.5802	0.6945	0.9038	0.6322	0.6656	0.69526	T	DER	metabolic	110452
rs4506565	17554300	WTCCC	Type 2 diabetes	metabolism_or_weight	"1,924 European ancestry cases, 2,938 European ancestry controls"	EUR	10q25.2	10	112996282	1.36	T	5.00E-12	A	T	0.4349	0.2594	0.0228	0.3459	0.3037	0.27334	T	ANC	metabolic	4862
rs4527850	23300278	Saxena R	Type 2 diabetes	metabolism_or_weight	"842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls"	SAS	8q24.22	8	133184606	1.23	T	2.00E-06	T	C	0.8389	0.7349	0.4187	0.7127	0.6769	0.67642	T	ANC	metabolic	1616
rs4607103	18372903	Zeggini E	Type 2 diabetes	metabolism_or_weight	"4,549 European ancestry cases, 5,579 European ancestry controls"	EUR	3p14.1	3	64726228	1.09	C	1.00E-08	C	T	0.6906	0.6441	0.6319	0.7674	0.4765	0.6421	C	ANC	metabolic	10128
rs4635554	20657596	Johansen CT	Hypertriglyceridemia	metabolism_or_weight	"463 European ancestry cases, 1,197 European ancestry controls"	EUR	2p24.1	2	21166787	1.67	G	2.00E-07	T	G	0.5182	0.3213	0.376	0.3191	0.2393	0.35478	T	DER	metabolic	1660
rs4689388	19734900	Rung J	Type 2 diabetes and other traits	metabolism_or_weight	"679 European ancestry cases, 697 European ancestry controls"	EUR	4p16.1	4	6268329	1.16	A	1.00E-08	G	A	0.7436	0.6873	0.9127	0.6193	0.7321	0.739	A	ANC	metabolic	1376
rs4712523	19401414	Takeuchi F	Type 2 diabetes	metabolism_or_weight	"519 Japanese ancestry cases, 503 Japanese ancestry controls"	EAS	6p22.3	6	20657333	1.27	G	7.00E-20	A	G	0.649	0.3242	0.4067	0.3191	0.2914	0.39808	A	DER	metabolic	1022
rs4712523	19734900	Rung J	Type 2 diabetes and other traits	metabolism_or_weight	"679 European ancestry cases, 697 European ancestry controls"	EUR	6p22.3	6	20657333	1.2	G	2.00E-12	A	G	0.649	0.3242	0.4067	0.3191	0.2914	0.39808	A	DER	metabolic	1376
rs4712524	18711366	Unoki H	Type 2 diabetes	metabolism_or_weight	"194 Japanese ancestry cases, 1,558 Japanese ancestry controls"	EAS	6p22.3	6	20657634	1.22	G	3.00E-10	A	G	0.6316	0.3184	0.4008	0.3181	0.2556	0.3849	A	DER	metabolic	1752
rs472265	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	19q13.2	19	39090097	1.39	G	9.00E-06	A	G	0.236	0.1873	0.2857	0.1928	0.2331	0.22698	G	ANC	metabolic	8135
rs4735692	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	"8q21.11, 8q21.13"	8	75703428	1.04	A	4.00E-10	A	G	0.3865	0.4236	0.373	0.5855	0.411	0.43592	A	ANC	metabolic	204498
rs476828	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	18q21.32	18	60185354	1.33	C	9.00E-14	T	C	0.4433	0.1441	0.2054	0.2465	0.3671	0.28128	C	ANC	metabolic	6889
rs4812829	21874001	Kooner JS	Type 2 diabetes	metabolism_or_weight	"5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls"	SAS	20q13.12	20	44360627	1.09	A	3.00E-10	G	A	0.0749	0.438	0.4177	0.16	0.3006	0.27824	G	DER	metabolic	20019
rs4871297	23028342	Sandholm N	Type 1 diabetes nephropathy	metabolism_or_weight	"Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy"	EUR	8q24.13	8	122693916	1.23	A	2.00E-06	G	A	0.5938	0.4107	0.623	0.5378	0.5726	0.54758	G	DER	metabolic	6233
rs5015480	17463249	Zeggini E	Type 2 diabetes	metabolism_or_weight	"1,924 European ancestry cases, 2,938 European ancestry controls"	EUR	10q23.33	10	92705802	1.13	C	5.00E-06	C	T	0.6392	0.464	0.1726	0.5736	0.3681	0.4435	C	ANC	metabolic	4862
rs516946	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	8p11.21	8	41661730	1.1	C	2.00E-07	T	C	0.7935	0.7939	0.8552	0.7694	0.8098	0.80436	C	ANC	metabolic	110452
rs5215	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	11p15.1	11	17387083	1.08	C	3.00E-11	C	T	0.0454	0.2968	0.3383	0.3529	0.3957	0.28582	T	DER	metabolic	110452
rs5219	17463248	Scott LJ	Type 2 diabetes	metabolism_or_weight	"1,161 European ancestry cases, 1,174 European ancestry controls"	EUR	11p15.1	11	17388025	1.14	T	7.00E-11	T	C	0.0234	0.2925	0.3383	0.3529	0.3957	0.28056	C	DER	metabolic	2335
rs538656	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	18q21.32	18	60183189	1.15	T	2.00E-36	G	T	0.4107	0.1383	0.1865	0.2396	0.32	0.25902	T	ANC	metabolic	204498
rs564343	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	"11q13.1, 11q13.2"	11	66127695	1.22	A	2.00E-09	A	G	0.7602	0.6297	0.6677	0.4195	0.3405	0.56352	A	ANC	metabolic	6889
rs564398	17463249	Zeggini E	Type 2 diabetes	metabolism_or_weight	"1,924 European ancestry cases, 2,938 European ancestry controls"	EUR	9p21.3	9	22029548	1.13	T	1.00E-06	T	C	0.9856	0.8112	0.9077	0.5865	0.727	0.8036	T	ANC	metabolic	4862
rs6017317	22158537	Cho YS	Type 2 diabetes	metabolism_or_weight	"5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls"	EAS	20q13.12	20	44318326	1.09	G	1.00E-11	T	G	0.497	0.4784	0.4335	0.163	0.409	0.39618	G	ANC	metabolic	18817
rs6027506	23028342	Sandholm N	Type 1 diabetes nephropathy	metabolism_or_weight	"Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy"	EUR	20q13.33	20	60321657	1.22	A	5.00E-06	A	G	0.4153	0.7075	0.8968	0.6252	0.6616	0.66128	G	DER	metabolic	6233
rs6110577	19553259	Cotsapas C	Obesity (extreme)	metabolism_or_weight	"775 European ancestry cases, 3,197 European ancestry controls"	EUR	20p12.1	20	15355108	1.4	C	5.00E-06	T	C	0.2943	0.2882	0.4812	0.1491	0.1861	0.27978	T	DER	metabolic	3972
rs614226	23028342	Sandholm N	Type 1 diabetes nephropathy	metabolism_or_weight	"Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy"	EUR	12q24.31	12	120536707	1.35	C	2.00E-06	C	T	0.8169	0.8357	0.8413	0.7962	0.8119	0.8204	C	ANC	metabolic	6233
rs623323	23300278	Saxena R	Type 2 diabetes	metabolism_or_weight	"842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls"	SAS	17p13.3	17	796780	1.28	T	4.00E-06	T	C	0.4592	0.1311	0.1062	0.1352	0.1053	0.1874	T	ANC	metabolic	1616
rs633715	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	1q25.2	1	177883445	1.12	C	9.00E-23	T	C	0.0825	0.1816	0.1468	0.1968	0.1493	0.1514	T	DER	metabolic	204498
rs6426514	23300278	Saxena R	Type 2 diabetes	metabolism_or_weight	"842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls"	SAS	1q42.13	1	228744368	1.51	A	2.00E-06	G	A	0.1271	0.0937	0.0317	0.1014	0.0215	0.07508	G	DER	metabolic	1616
rs642858	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	6q24.1	6	139952510	1.35	A	2.00E-06	G	A	0.1324	0.1988	0.4147	0.2386	0.4162	0.28014	G	DER	metabolic	8135
rs6467136	22158537	Cho YS	Type 2 diabetes	metabolism_or_weight	"5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls"	EAS	7q32.1	7	127524904	1.11	G	5.00E-11	A	G	0.6899	0.4625	0.7946	0.501	0.5378	0.59716	G	ANC	metabolic	18817
rs6583826	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	10q23.33	10	92588073	1.18	G	7.00E-06	G	A	0.4796	0.4755	0.1984	0.4881	0.2843	0.38518	G	ANC	metabolic	8135
rs6595551	24465431	Ma RC	Type 2 diabetes (young onset) and obesity	metabolism_or_weight	"99 Chinese ancestry cases, 101 Chinese ancestry controls"	EAS	5q23.2	5	124804202	2.63	C	6.00E-06	C	T	0.562	0.8876	0.6448	0.8201	0.8661	0.75612	T	DER	metabolic	200
rs6711012	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	2p25.3	2	624034	1.18	C	3.00E-40	G	C	0.9017	0.8617	0.9147	0.83	0.8067	0.86296	G	DER	metabolic	204498
rs6723108	23209189	Tabassum R	Type 2 diabetes	metabolism_or_weight	"1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls"	MIX	2q21.3	2	134722410	1.27	T	7.00E-08	G	T	0.9856	0.8386	0.999	0.6521	0.9387	0.8828	T	ANC	metabolic	2128
rs6726292	19553259	Cotsapas C	Obesity (extreme)	metabolism_or_weight	"775 European ancestry cases, 3,197 European ancestry controls"	EUR	2p16.1	2	54929493	1.39	G	1.00E-06	G	A	0.6006	0.6254	0.7659	0.7296	0.4407	0.63244	A	DER	metabolic	3972
rs6731302	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	2p16.1	2	58606358	1.04	A	2.00E-09	A	G	0.2057	0.4697	0.2431	0.4046	0.4039	0.3454	G	DER	metabolic	204498
rs6769511	18711366	Unoki H	Type 2 diabetes	metabolism_or_weight	"194 Japanese ancestry cases, 1,558 Japanese ancestry controls"	EAS	3q27.2	3	185812502	1.23	C	1.00E-09	T	C	0.848	0.3026	0.2639	0.3042	0.4571	0.43516	C	ANC	metabolic	1752
rs6780569	23945395	Hara K	Type 2 diabetes	metabolism_or_weight	"5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls"	EAS	3p24.3	3	23156993	1.17	G	4.00E-07	G	A	0.3759	0.8934	0.8155	0.8837	0.6779	0.72928	G	ANC	metabolic	26805
rs679992	25102180	Ng MC	Type 2 diabetes	metabolism_or_weight	"8,284 African American cases, 15,543 African American controls"	AFR	1q43	1	241024982	1.09	T	1.00E-06	C	T	0.534	0.4135	0.123	0.4324	0.3415	0.36888	C	DER	metabolic	23827
rs6815464	22158537	Cho YS	Type 2 diabetes	metabolism_or_weight	"5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls"	EAS	4p16.3	4	1316113	1.13	C	2.00E-20	C	G	0.8775	0.7176	0.5754	0.9742	0.8333	0.7956	C	ANC	metabolic	18817
rs6815464	23945395	Hara K	Type 2 diabetes	metabolism_or_weight	"5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls"	EAS	4p16.3	4	1316113	1.1236	G	2.00E-07	C	G	0.1225	0.2824	0.4246	0.0258	0.1667	0.2044	C	DER	metabolic	26805
rs6930576	21150874	McDonough CW	Type 2 diabetes nephropathy	metabolism_or_weight	"965 African American cases, 1,029 African American controls"	AFR	6q24.3	6	148383818	1.31	A	7.00E-07	G	A	0.2791	0.4294	0.2123	0.3618	0.3947	0.33546	G	DER	metabolic	1994
rs7003257	25102180	Ng MC	Type 2 diabetes	metabolism_or_weight	"8,284 African American cases, 15,543 African American controls"	AFR	8q13.2	8	67701155	1.1	T	9.00E-06	T	C	0.7027	0.8919	0.7927	0.9245	0.9366	0.84968	T	ANC	metabolic	23827
rs7041847	22158537	Cho YS	Type 2 diabetes	metabolism_or_weight	"5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls"	EAS	9p24.2	9	4287466	1.1	A	2.00E-14	A	G	0.9539	0.5865	0.501	0.5328	0.6033	0.6355	A	ANC	metabolic	18817
rs7107217	22238593	Palmer ND	Type 2 diabetes	metabolism_or_weight	"965 African American cases, 1,029 African American controls"	AFR	11q24.3	11	129603795	1.18	C	3.00E-07	A	C	0.5295	0.4813	0.3492	0.5258	0.6656	0.51028	A	DER	metabolic	1994
rs7119	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	15q24.3	15	77485290	1.24	T	5.00E-07	C	T	0.4773	0.3761	0.1538	0.4105	0.2587	0.33528	T	ANC	metabolic	8135
rs7138803	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	12q13.12	12	49853685	1.09	A	1.00E-20	G	A	0.1331	0.2622	0.2738	0.338	0.3456	0.27054	G	DER	metabolic	204498
rs7141420	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	14q31.1	14	79433111	1.08	T	1.00E-17	C	T	0.6172	0.6614	0.4315	0.5298	0.5869	0.56536	T	ANC	metabolic	204498
rs7163757	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	15q22.2	15	62099409	1.06	C	4.00E-06	C	T	0.289	0.4841	0.6329	0.5845	0.6002	0.51814	T	DER	metabolic	110452
rs7172432	23945395	Hara K	Type 2 diabetes	metabolism_or_weight	"5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls"	EAS	15q22.2	15	62104190	1.11	A	1.00E-06	A	G	0.2874	0.487	0.629	0.5885	0.6012	0.51862	G	DER	metabolic	26805
rs7178572	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	15q24.3	15	77454848	1.08	G	2.00E-11	A	G	0.4939	0.6268	0.371	0.6928	0.4836	0.53362	G	ANC	metabolic	110452
rs7184597	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	16p11.2	16	28910488	1.1	T	7.00E-09	T	C	0.0083	0.451	0.1151	0.2833	0.1605	0.20364	C	DER	metabolic	204498
rs7185735	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	16q12.2	16	53788739	1.33	G	1.00E-79	A	G	0.4947	0.2622	0.1687	0.4125	0.2883	0.32528	G	ANC	metabolic	204498
rs7187365	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	16q24.1	16	86478309	1.22	C	6.00E-06	T	C	0.7965	0.8559	0.7837	0.8241	0.7352	0.79908	T	DER	metabolic	6889
rs73954691	25483131	Ghassibe-Sabbagh M	Type 2 diabetes	metabolism_or_weight	"1,384 Lebanese ancestry cases, 1,902 Lebanese ancestry controls"	SAS	2q14.3	2	127663671	2.6	G	3.00E-06	G	C	0.8623	0.9841	0.994	0.9841	0.9755	0.96	G	ANC	metabolic	3286
rs7403531	22961080	Li H	Type 2 diabetes	metabolism_or_weight	"1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls"	EAS	15q14	15	38530704	1.1	T	4.00E-09	T	C	0.1513	0.3991	0.3462	0.2167	0.2587	0.2744	C	DER	metabolic	3712
rs7498665	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	16p11.2	16	28871920	1.07	G	3.00E-13	A	G	0.2277	0.4856	0.126	0.329	0.2178	0.27722	G	ANC	metabolic	204498
rs7503807	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	17q25.3	17	80617311	1.04	A	2.00E-08	A	C	0.5189	0.6787	0.6984	0.5616	0.6984	0.6312	A	ANC	metabolic	204498
rs7531118	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	1p31.1	1	72371556	1.08	C	2.00E-17	T	C	0.0454	0.3847	0.2629	0.5537	0.2863	0.3066	T	DER	metabolic	204498
rs7542900	22238593	Palmer ND	Type 2 diabetes	metabolism_or_weight	"965 African American cases, 1,029 African American controls"	AFR	1p21.3	1	94604485	1.16	C	6.00E-06	T	C	0.5287	0.6715	0.6706	0.831	0.7638	0.69312	C	ANC	metabolic	1994
rs7560163	22238593	Palmer ND	Type 2 diabetes	metabolism_or_weight	"965 African American cases, 1,029 African American controls"	AFR	2q23.3	2	150781422	1.33	C	7.00E-09	C	G	0.8843	0.9784	0.8651	0.994	0.9581	0.93598	G	DER	metabolic	1994
rs7578597	18372903	Zeggini E	Type 2 diabetes	metabolism_or_weight	"4,549 European ancestry cases, 5,579 European ancestry controls"	EUR	2p21	2	43505684	1.15	T	1.00E-09	T	C	0.6906	0.9251	0.994	0.9095	0.8681	0.87746	T	ANC	metabolic	10128
rs7583877	23028342	Sandholm N	Type 1 diabetes nephropathy	metabolism_or_weight	"Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy"	EUR	2q11.2	2	99844192	1.29	C	1.00E-08	C	T	0.5681	0.4006	0.3651	0.2694	0.226	0.36584	C	ANC	metabolic	6233
rs7588550	23028342	Sandholm N	Type 1 diabetes nephropathy	metabolism_or_weight	"Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy"	EUR	2q34	2	212304043	1.52	A	2.00E-07	G	A	0.9977	0.9107	0.8938	0.9513	0.9243	0.93556	A	ANC	metabolic	6233
rs7603514	19553259	Cotsapas C	Obesity (extreme)	metabolism_or_weight	"775 European ancestry cases, 3,197 European ancestry controls"	EUR	2q33.3	2	205971888	1.36	A	8.00E-06	G	A	0.1929	0.1282	0.1944	0.1968	0.1973	0.18192	A	ANC	metabolic	3972
rs7612463	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	EUR	3p24.3	3	23294959	1.1	C	7.00E-09	C	A	0.7965	0.9236	0.8085	0.8678	0.7434	0.82796	C	ANC	metabolic	110452
rs7624327	22911880	Boraska V	Eating disorders	metabolism_or_weight	"Up to 2,567 European ancestry individuals"	EUR	3q25.31	3	157119117	1.13	A	3.00E-06	G	A	0.0393	0.0648	0.1339	0.0924	0.3456	0.1352	G	DER	metabolic	2567
rs7630877	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	3q26.33	3	179943530	1.32	A	7.00E-06	G	A	0.3245	0.2248	0.1687	0.3241	0.2986	0.26814	A	ANC	metabolic	8135
rs7636	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	7q22.1	7	100892456	1.85	A	5.00E-06	G	A	0.2897	0.0663	0.002	0.0527	0.044	0.09094	G	DER	metabolic	8135
rs7659604	17554300	WTCCC	Type 2 diabetes	metabolism_or_weight	"1,924 European ancestry cases, 2,938 European ancestry controls"	EUR	4q27	4	121744359	1.35	T	9.00E-06	C	T	0.7065	0.3112	0.3899	0.4314	0.5204	0.47188	T	ANC	metabolic	4862
rs7690467	22911880	Boraska V	Eating disorders	metabolism_or_weight	"Up to 2,567 European ancestry individuals"	EUR	4q28.3	4	132405240	1.12	T	7.00E-06	T	C	0.59	0.4885	0.5774	0.7356	0.6524	0.60878	C	DER	metabolic	2567
rs773506	21150874	McDonough CW	Type 2 diabetes nephropathy	metabolism_or_weight	"965 African American cases, 1,029 African American controls"	AFR	9q22.31	9	91213189	1.32	G	6.00E-06	G	A	0.8631	0.3473	0.7163	0.3718	0.4642	0.55254	G	ANC	metabolic	1994
rs7754840	23945395	Hara K	Type 2 diabetes	metabolism_or_weight	"5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls"	EAS	6p22.3	6	20661019	1.18	C	2.00E-13	G	C	0.6316	0.3184	0.4008	0.3181	0.2556	0.3849	G	DER	metabolic	26805
rs7756992	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	EUR	6p22.3	6	20679478	1.2	G	2.00E-26	A	G	0.6331	0.2997	0.4722	0.2813	0.2689	0.39104	G	ANC	metabolic	110452
rs7766070	25483131	Ghassibe-Sabbagh M	Type 2 diabetes	metabolism_or_weight	"1,384 Lebanese ancestry cases, 1,902 Lebanese ancestry controls"	SAS	6p22.3	6	20686342	1.38	A	9.00E-09	C	A	0.2005	0.2378	0.3869	0.2803	0.2669	0.27448	C	DER	metabolic	3286
rs7769051	21150874	McDonough CW	Type 2 diabetes nephropathy	metabolism_or_weight	"965 African American cases, 1,029 African American controls"	AFR	6q23.2	6	132825657	1.28	A	2.00E-06	C	A	0.3404	0.098	0.0843	0.1332	0.1881	0.1688	A	ANC	metabolic	1994
rs7845219	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	8q22.1	8	94925274	1.08	T	6.00E-08	T	C	0.7224	0.4352	0.2629	0.4732	0.3906	0.45686	T	ANC	metabolic	110452
rs7903146	25102180	Ng MC	Type 2 diabetes	metabolism_or_weight	"8,284 African American cases, 15,543 African American controls"	AFR	10q25.2	10	112998590	1.36	T	4.00E-94	C	T	0.2602	0.2349	0.0228	0.3171	0.2986	0.22672	T	ANC	metabolic	23827
rs7903146	20694148	Zabaneh D	Metabolic syndrome	metabolism_or_weight	"2,554 Indian Asian ancestry individuals"	SAS	10q25.2	10	112998590	1.33	T	7.00E-07	C	T	0.2602	0.2349	0.0228	0.3171	0.2986	0.22672	T	ANC	metabolic	2554
rs7903146	19734900	Rung J	Type 2 diabetes and other traits	metabolism_or_weight	"679 European ancestry cases, 697 European ancestry controls"	EUR	10q25.2	10	112998590	1.48	T	1.00E-30	C	T	0.2602	0.2349	0.0228	0.3171	0.2986	0.22672	T	ANC	metabolic	1376
rs791595	23945395	Hara K	Type 2 diabetes	metabolism_or_weight	"5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls"	EAS	7q32.1	7	128222749	1.17	A	3.00E-13	A	G	0.4266	0.134	0.125	0.1779	0.2137	0.21544	G	DER	metabolic	26805
rs7961581	18372903	Zeggini E	Type 2 diabetes	metabolism_or_weight	"4,549 European ancestry cases, 5,579 European ancestry controls"	EUR	12q21.1	12	71269322	1.09	C	1.00E-09	C	T	0.1755	0.1988	0.2173	0.2982	0.3119	0.24034	C	ANC	metabolic	10128
rs7989336	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	13q32.1	13	96365294	1.1	A	1.00E-08	G	A	0.6762	0.3617	0.4722	0.5089	0.59	0.5218	A	ANC	metabolic	204498
rs8028313	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	15q23	15	67750719	1.08	C	6.00E-13	C	G	0.6581	0.5403	0.4931	0.7694	0.6391	0.62	C	ANC	metabolic	204498
rs8043757	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	16q12.2	16	53779538	1.23	T	5.00E-110	A	T	0.4107	0.2522	0.1677	0.4135	0.2894	0.3067	G	DER	metabolic	204498
rs8050136	17463249	Zeggini E	Type 2 diabetes	metabolism_or_weight	"1,924 European ancestry cases, 2,938 European ancestry controls"	EUR	16q12.2	16	53782363	1.23	A	7.00E-14	C	A	0.4327	0.255	0.1657	0.4135	0.2894	0.31126	A	ANC	metabolic	4862
rs8108269	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	19q13.32	19	45655255	1.06	G	5.00E-06	T	G	0.3986	0.3818	0.4365	0.2952	0.3384	0.3701	G	ANC	metabolic	110452
rs8181588	24101674	Hanson RL	Type 2 diabetes	metabolism_or_weight	"278 American Indian ancestry young-onset cases, 129 American Indian ancestry cases, 424 American Indian ancestry controls from 514 sibships"	AMR	11p15.4	11	2810311	1.3	T	5.00E-09	T	C	0.798	0.7061	0.5724	0.9523	0.9816	0.80208	T	ANC	metabolic	1345
rs831571	22158537	Cho YS	Type 2 diabetes	metabolism_or_weight	"5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls"	EAS	3p14.1	3	64062621	1.09	C	8.00E-11	T	C	0.7814	0.8833	0.6319	0.7922	0.7975	0.77726	C	ANC	metabolic	18817
rs849135	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	7p15.1	7	28156794	1.12	G	2.00E-09	G	A	0.789	0.6499	0.9871	0.497	0.7873	0.74206	G	ANC	metabolic	110452
rs864745	18372903	Zeggini E	Type 2 diabetes	metabolism_or_weight	"4,549 European ancestry cases, 5,579 European ancestry controls"	EUR	7p15.1	7	28140937	1.1	T	5.00E-14	T	C	0.789	0.6354	0.7728	0.4801	0.7628	0.68802	T	ANC	metabolic	10128
rs878889	23028342	Sandholm N	Type 1 diabetes nephropathy	metabolism_or_weight	"Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy"	EUR	14q22.3	14	56754421	1.43	A	8.00E-07	G	A	0.2103	0.2392	0.1022	0.1521	0.1227	0.1653	A	ANC	metabolic	6233
rs887912	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	2p16.1	2	59075742	1.07	T	1.00E-10	T	C	0.0431	0.1657	0.002	0.2803	0.1452	0.12726	C	DER	metabolic	204498
rs9295474	21490949	Sim X	Type 2 diabetes	metabolism_or_weight	"2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls"	EAS	6p22.3	6	20652486	1.16	G	9.00E-06	C	G	0.3691	0.2781	0.4077	0.3181	0.3313	0.34086	C	DER	metabolic	8135
rs9300039	17463248	Scott LJ	Type 2 diabetes	metabolism_or_weight	"1,161 European ancestry cases, 1,174 European ancestry controls"	EUR	11p12	11	41893816	1.48	C	6.00E-08	C	A	0.8729	0.9481	0.7738	0.9125	0.8466	0.87078	C	ANC	metabolic	2335
rs9328321	23563609	Wheeler E	Obesity (early onset extreme)	metabolism_or_weight	"1,509 European ancestry cases, 5,380 European ancestry controls"	EUR	6p25.1	6	5600205	1.22	A	5.00E-07	G	A	0.6762	0.2349	0.1627	0.2217	0.2546	0.31002	G	DER	metabolic	6889
rs9465871	17554300	WTCCC	Type 2 diabetes	metabolism_or_weight	"1,924 European ancestry cases, 2,938 European ancestry controls"	EUR	6p22.3	6	20717024	1.18	C	3.00E-07	T	C	0.6263	0.255	0.4712	0.1779	0.2607	0.35822	T	DER	metabolic	4862
rs9470794	22158537	Cho YS	Type 2 diabetes	metabolism_or_weight	"5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls"	EAS	6p21.2	6	38139068	1.12	C	2.00E-10	T	C	0.2012	0.0865	0.2897	0.0944	0.1452	0.1634	C	ANC	metabolic	18817
rs9472138	18372903	Zeggini E	Type 2 diabetes	metabolism_or_weight	"4,549 European ancestry cases, 5,579 European ancestry controls"	EUR	6p21.1	6	43844025	1.06	T	4.00E-06	C	T	0.1702	0.1888	0.1369	0.2952	0.1789	0.194	C	DER	metabolic	10128
rs9552911	23300278	Saxena R	Type 2 diabetes	metabolism_or_weight	"842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls"	SAS	13q12.12	13	23290518	1.49	G	2.00E-08	G	A	0.9977	0.9841	0.753	1	0.8436	0.91568	G	ANC	metabolic	1616
rs9568867	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	13q14.3	13	53533217	1.15	A	2.00E-09	G	A	0.0265	0.3141	0.247	0.1113	0.1748	0.17474	G	DER	metabolic	204498
rs964184	20657596	Johansen CT	Hypertriglyceridemia	metabolism_or_weight	"463 European ancestry cases, 1,197 European ancestry controls"	EUR	11q23.3	11	116778201	3.28	G	5.00E-24	G	C	0.2209	0.2767	0.2401	0.162	0.229	0.22574	C	DER	metabolic	1660
rs9816226	23563607	Berndt SI	Obesity	metabolism_or_weight	"93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls"	EUR	3q27.2	3	186116710	1.07	T	2.00E-14	A	T	0.8086	0.8746	0.9405	0.8121	0.816	0.85036	T	ANC	metabolic	204498
rs9839776	24514567	Boraska V	Anorexia nervosa	metabolism_or_weight	"2,907 European ancestry cases, 14,860 European ancestry controls"	EUR	3q26.33	3	181593779	1.158	T	3.00E-07	C	T	0.3722	0.2954	0.1954	0.3052	0.181	0.26984	C	DER	metabolic	17767
rs988712	21708048	Jiao H	Obesity	metabolism_or_weight	"164 European ancestry morbidly obese  individuals, 163 European ancestry lean individuals"	EUR	11p14.1	11	27541835	1.36	G	5.00E-17	G	T	0.9834	0.7089	0.8512	0.7515	0.7321	0.80542	G	ANC	metabolic	327
rs9936385	24509480	Mahajan A	Type 2 diabetes	metabolism_or_weight	"12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls"	MIX	16q12.2	16	53785257	1.13	C	1.00E-12	T	C	0.4939	0.2622	0.1687	0.4135	0.2894	0.32554	C	ANC	metabolic	110452
rs9939609	17554300	WTCCC	Type 2 diabetes	metabolism_or_weight	"1,924 European ancestry cases, 2,938 European ancestry controls"	EUR	16q12.2	16	53786615	1.34	A	2.00E-07	T	A	0.4939	0.2622	0.1687	0.4135	0.2883	0.32532	A	ANC	metabolic	4862
rs9941349	19553259	Cotsapas C	Obesity (extreme)	metabolism_or_weight	"775 European ancestry cases, 3,197 European ancestry controls"	EUR	16q12.2	16	53791576	1.48	T	6.00E-12	C	T	0.1392	0.2536	0.2103	0.4235	0.3671	0.27874	C	DER	metabolic	3972
rs999943	19553259	Cotsapas C	Obesity (extreme)	metabolism_or_weight	"775 European ancestry cases, 3,197 European ancestry controls"	EUR	6p21.31	6	33656956	1.37	A	1.00E-06	A	G	0.798	0.6614	0.7292	0.7107	0.7065	0.72116	G	DER	metabolic	3972
rs1004446	17632545	Hakonarson H	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls"	EUR	11p15.5	11	2148913	1.61	G	4.00E-09	G	A	0.5703	0.7334	0.6855	0.6451	0.7669	0.68024	A	DER	metabolic	2171
rs10517086	19430480	Barrett JC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"7,514 cases, 9,045 controls"	EUR	4p15.2	4	26083889	1.09	A	5.00E-10	G	A	0.2837	0.2061	0.003	0.3022	0.1084	0.18068	G	DER	metabolic	16559
rs11171739	17554300	WTCCC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"1,963 European ancestry cases, 2,938 European ancestry controls"	EUR	12q13.2	12	56076841	1.34	C	1.00E-11	C	T	0.8359	0.3156	0.2212	0.4145	0.2689	0.41122	C	ANC	metabolic	4901
rs11755527	18978792	Cooper JD	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"3,561 European ancestry cases, 4,646 European ancestry controls"	EUR	6q15	6	90248512	1.13	G	5.00E-12	C	G	0.1778	0.438	0.4187	0.4722	0.409	0.38314	G	ANC	metabolic	8207
rs12444268	19430480	Barrett JC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"7,514 cases, 9,045 controls"	EUR	16p12.3	16	20331250	1.1	A	2.00E-07	T	A	0.0885	0.1974	0.0179	0.3181	0.136	0.15158	T	DER	metabolic	16559
rs12708716	17554260	Todd JA	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"2,000 European ancestry cases, 3,000 European ancestry controls"	EUR	16p13.13	16	11086016	1.23	A	3.00E-18	A	G	0.5643	0.7118	0.7748	0.6412	0.5982	0.65806	A	ANC	metabolic	5000
rs1445898	17554260	Todd JA	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"2,000 European ancestry cases, 3,000 European ancestry controls"	EUR	5p13.2	5	35910427	1.12	C	8.00E-06	C	T	0.7723	0.4063	0.2391	0.5477	0.2883	0.45074	C	ANC	metabolic	5000
rs1534422	19430480	Barrett JC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"7,514 cases, 9,045 controls"	EUR	2p24.3	2	12500615	1.08	G	2.00E-06	G	A	0.6082	0.4986	0.2946	0.4344	0.4571	0.45858	G	ANC	metabolic	16559
rs1701704	18198356	Hakonarson H	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls"	EUR	12q13.2	12	56018703	1.25	G	9.00E-10	T	G	0.0825	0.2046	0.2004	0.328	0.2331	0.20972	T	DER	metabolic	2171
rs17166496	17554300	WTCCC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"1,963 European ancestry cases, 2,938 European ancestry controls"	EUR	5q31.1	5	133293192	1.3	G	5.00E-06	G	C	0.5741	0.4841	0.7222	0.4195	0.5777	0.55552	G	ANC	metabolic	4901
rs17388568	17554300	WTCCC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"1,963 European ancestry cases, 2,938 European ancestry controls"	EUR	4q27	4	122408207	1.26	A	3.00E-06	G	A	0.0242	0.1585	0.121	0.2922	0.1493	0.14904	G	DER	metabolic	4901
rs17696736	17554260	Todd JA	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"2,000 European ancestry cases, 3,000 European ancestry controls"	EUR	12q24.13	12	112049014	1.22	G	2.00E-16	A	G	0.0174	0.2262	0.003	0.4294	0.0665	0.1485	A	DER	metabolic	5000
rs1990760	17554260	Todd JA	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"2,000 European ancestry cases, 3,000 European ancestry controls"	EUR	2q24.2	2	162267541	1.18	T	2.00E-11	C	T	0.1256	0.3905	0.1865	0.6054	0.5644	0.37448	C	DER	metabolic	5000
rs2165738	18978792	Cooper JD	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"3,561 European ancestry cases, 4,646 European ancestry controls"	EUR	2p23.3	2	24469940	1.07	C	4.00E-06	C	G	0.7564	0.2709	0.3274	0.2893	0.3354	0.39588	C	ANC	metabolic	8207
rs2269241	19430480	Barrett JC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"7,514 cases, 9,045 controls"	EUR	1p31.3	1	63643100	1.1	C	4.00E-07	T	C	0.2587	0.402	0.2093	0.2346	0.1646	0.25384	C	ANC	metabolic	16559
rs2292239	17554260	Todd JA	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"2,000 European ancestry cases, 3,000 European ancestry controls"	EUR	12q13.2	12	56088396	1.28	T	2.00E-20	T	G	0.4274	0.2435	0.2202	0.333	0.2178	0.28838	T	ANC	metabolic	5000
rs2304256	19966805	Wallace C	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"7,514 European ancestry cases, 9,045 European ancestry controls"	EUR	19p13.2	19	10364976	1.16	C	4.00E-09	C	A	0.9107	0.8055	0.4762	0.7376	0.7076	0.72752	C	ANC	metabolic	16559
rs2476601	17554260	Todd JA	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"2,000 European ancestry cases, 3,000 European ancestry controls"	EUR	1p13.2	1	113834946	1.98	A	2.00E-80	A	G	0.003	0.036	0	0.0944	0.0133	0.02934	G	DER	metabolic	5000
rs2542151	17554260	Todd JA	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"2,000 European ancestry cases, 3,000 European ancestry controls"	EUR	18p11.21	18	12779948	1.3	G	1.00E-14	G	T	0.1997	0.1484	0.1925	0.1392	0.1748	0.17092	T	DER	metabolic	5000
rs2903692	17632545	Hakonarson H	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls"	EUR	16p13.13	16	11144926	1.54	G	7.00E-11	G	A	0.6876	0.7248	0.7768	0.6461	0.5409	0.67524	G	ANC	metabolic	2171
rs3825932	18978792	Cooper JD	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"3,561 European ancestry cases, 4,646 European ancestry controls"	EUR	15q25.1	15	78943104	1.16	T	3.00E-15	T	C	0.8374	0.5922	0.9048	0.34	0.4018	0.61524	T	ANC	metabolic	8207
rs416603	18978792	Cooper JD	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"3,561 European ancestry cases, 4,646 European ancestry controls"	EUR	16p13.13	16	11270222	1.06	T	3.00E-06	A	T	0.4977	0.5403	0.1498	0.4463	0.4029	0.4074	A	DER	metabolic	8207
rs4788084	19430480	Barrett JC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"7,514 cases, 9,045 controls"	EUR	16p11.2	16	28528527	1.09	C	3.00E-13	C	T	0.7731	0.5101	0.7143	0.6461	0.7781	0.68434	C	ANC	metabolic	16559
rs4900384	19430480	Barrett JC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"7,514 cases, 9,045 controls"	EUR	14q32.2	14	98032614	1.09	G	4.00E-09	A	G	0.6127	0.3617	0.6101	0.2773	0.5491	0.48218	A	DER	metabolic	16559
rs6534347	17554300	WTCCC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"1,963 European ancestry cases, 2,938 European ancestry controls"	EUR	4q27	4	122277280	1.3	A	2.00E-06	A	G	0.3162	0.4755	0.5833	0.3777	0.3446	0.41946	G	DER	metabolic	4901
rs6679677	17554300	WTCCC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"1,963 European ancestry cases, 2,938 European ancestry controls"	EUR	1p13.2	1	113761186	1.82	A	5.00E-26	C	A	0.0023	0.0303	0	0.0915	0.0133	0.02748	C	DER	metabolic	4901
rs6897932	17554260	Todd JA	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"2,000 European ancestry cases, 3,000 European ancestry controls"	EUR	5p13.2	5	35874473	1.12	C	8.00E-06	C	T	0.9342	0.817	0.8313	0.7286	0.7883	0.81988	C	ANC	metabolic	5000
rs7202877	19430480	Barrett JC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"7,514 cases, 9,045 controls"	EUR	16q23.1	16	75213347	1.28	G	3.00E-15	T	G	0.1868	0.0821	0.2133	0.1034	0.0808	0.13328	T	DER	metabolic	16559
rs763361	17554260	Todd JA	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"2,000 European ancestry cases, 3,000 European ancestry controls"	EUR	18q22.2	18	69864406	1.16	T	1.00E-08	T	C	0.7368	0.4524	0.3879	0.4732	0.5133	0.51272	T	ANC	metabolic	5000
rs9272346	17554300	WTCCC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"1,963 European ancestry cases, 2,938 European ancestry controls"	EUR	6p21.32	6	32636595	5.49	G	5.00E-134	G	A	0.5325	0.3213	0.4921	0.4513	0.5112	0.46168	A	DER	metabolic	4901
rs9388489	19430480	Barrett JC	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"7,514 cases, 9,045 controls"	EUR	6q22.32	6	126377573	1.17	G	4.00E-13	A	G	0.171	0.67	0.9732	0.4503	0.6534	0.58358	A	DER	metabolic	16559
rs941576	19966805	Wallace C	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"7,514 European ancestry cases, 9,045 European ancestry controls"	EUR	14q32.2	14	100839708	1.11	A	1.00E-10	A	G	0.5681	0.5231	0.6865	0.5835	0.7362	0.61948	G	DER	metabolic	16559
rs947474	18978792	Cooper JD	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"3,561 European ancestry cases, 4,646 European ancestry controls"	EUR	10p15.1	10	6348488	1.1	G	4.00E-09	G	A	0.3064	0.1167	0.121	0.1789	0.1472	0.17404	G	ANC	metabolic	8207
rs9653442	17554260	Todd JA	Type 1 diabetes	"metabolism_or_weight, allergy_autoimmune_immune"	"2,000 European ancestry cases, 3,000 European ancestry controls"	EUR	2q11.2	2	100208905	1.11	C	5.00E-06	C	T	0.7436	0.6052	0.4028	0.4533	0.5971	0.5604	T	DER	metabolic	5000
rs10036748	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	5q33.1	5	151078585	1.23	T	2.00E-09	C	T	0.8517	0.4625	0.7262	0.2555	0.3957	0.53832	T	ANC	misc	2252
rs1008953	20953189	Stuart PE	Psoriasis	allergy_autoimmune_immune	"Up to 1,831 cases, up to 2,546 controls"	EUR	20q13.12	20	45352086	1.14	C	1.00E-07	T	C	0.8752	0.7925	0.5536	0.7753	0.8047	0.76026	C	ANC	misc	4377
rs10168266	24097066	Li Y	Sjogren's syndrome	allergy_autoimmune_immune	"542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls"	EAS	"2q32.2, 2q32.3"	2	191071078	1.44	T	2.00E-17	C	T	0.143	0.353	0.3313	0.1809	0.184	0.23844	C	DER	misc	1592
rs10197862	24388013	Ferreira MA	Asthma and hay fever	allergy_autoimmune_immune	"6,685 European ancestry cases, 14,091 European ancestry controls"	EUR	2q12.1	2	102350089	1.24	A	4.00E-11	A	G	0.7012	0.879	0.9058	0.8479	0.9182	0.85042	A	ANC	misc	20776
rs1024161	20596022	Petukhova L	Alopecia areata	allergy_autoimmune_immune	"Up to 1,054 European ancestry cases, 3,278 European ancestry controls"	EUR	2q33.2	2	203857029	1.44	T	4.00E-13	T	C	0.5091	0.487	0.6369	0.3847	0.3057	0.46468	T	ANC	misc	4332
rs1024161	21841780	Chu X	Graves' disease	allergy_autoimmune_immune	"1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls"	EAS	2q33.2	2	203857029	1.3	T	2.00E-17	T	C	0.5091	0.487	0.6369	0.3847	0.3057	0.46468	T	ANC	misc	2958
rs10276619	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	7p12.2	7	50273756	1.1765	G	6.00E-06	G	A	0.5825	0.2882	0.5456	0.3777	0.2372	0.40624	A	DER	misc	5050
rs1044573	22036096	Ramasamy A	Allergic rhinitis	allergy_autoimmune_immune	"3,933 European ancestry cases, 8,965 European ancestry controls"	EUR	20p11.21	20	25226018	1.15	A	1.00E-06	A	G	0.5076	0.6715	0.0873	0.5288	0.4714	0.45332	G	DER	misc	12898
rs10466455	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	11p13	11	34759389	1.3774	T	2.00E-07	T	C	0.618	0.7262	0.5526	0.6133	0.6299	0.628	T	ANC	misc	3163
rs10484554	18369459	Liu Y	Psoriasis	allergy_autoimmune_immune	"218 European ancestry cases, 519 European ancestry controls"	EUR	6p21.33	6	31306778	2.8	T	2.00E-39	C	T	0.084	0.0836	0.0516	0.1431	0.1963	0.11172	C	DER	misc	737
rs10488631	21408207	Chung SA	Systemic lupus erythematosus	allergy_autoimmune_immune	"811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls"	EUR	7q32.1	7	128954129	1.92	C	7.00E-18	T	C	0.0068	0.0749	0.002	0.1004	0.135	0.06382	T	DER	misc	6530
rs10516487	18204447	Kozyrev SV	Systemic lupus erythematosus	allergy_autoimmune_immune	"279 European ancestry cases, 515 European ancestry controls"	EUR	4q24	4	101829919	1.38	G	4.00E-10	G	A	0.7761	0.8141	0.8125	0.7028	0.8149	0.78408	G	ANC	misc	794
rs1059513	23817571	Bonnelykke K	Allergic sensitization	allergy_autoimmune_immune	"5,789 European ancestry cases, 10,056 European ancestry controls"	EUR	12q13.3	12	57095926	1.3	T	1.00E-14	T	C	0.9682	0.8991	0.9087	0.8926	0.9601	0.92574	T	ANC	misc	15845
rs10760706	20596022	Petukhova L	Alopecia areata	allergy_autoimmune_immune	"Up to 1,054 European ancestry cases, 3,278 European ancestry controls"	EUR	9q31.1	9	99961410	1.32	C	4.00E-07	C	T	0.264	0.3617	0.2629	0.3151	0.5082	0.34238	T	DER	misc	4332
rs1076160	19169254	Nair RP	Psoriasis	allergy_autoimmune_immune	"1,359 European ancestry cases, 1,400 European ancestry controls"	EUR	9q34.13	9	132900647	1.09	T	6.00E-06	C	T	0.0545	0.4496	0.5585	0.5109	0.6176	0.43822	C	DER	misc	2759
rs10768122	22561518	Jin Y	Vitiligo	allergy_autoimmune_immune	"418 European ancestry cases, 2,810 European ancestry controls"	EUR	11p13	11	35259305	1.22	G	2.00E-09	A	G	0.1339	0.3631	0.4792	0.3797	0.5215	0.37548	A	DER	misc	3228
rs10782001	20953189	Stuart PE	Psoriasis	allergy_autoimmune_immune	"Up to 1,831 cases, up to 2,546 controls"	EUR	16p11.2	16	30931304	1.16	G	9.00E-10	G	A	0.7995	0.4294	0.0952	0.3588	0.7423	0.48504	G	ANC	misc	4377
rs10830962	22233651	Kwak SH	Diabetes (gestational)	allergy_autoimmune_immune	"468 Korean ancestry cases, 1,242 Korean ancestry controls"	EAS	11q14.3	11	92965261	1.454	G	2.00E-13	C	G	0.8419	0.3516	0.4296	0.4125	0.5215	0.51142	G	ANC	misc	1710
rs10845606	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	12p13.1	12	12681960	1.2658	C	4.00E-17	C	A	0.9902	0.8732	0.6925	0.7942	0.8211	0.83424	C	ANC	misc	5050
rs10857712	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	10q26.3	10	133412162	1.5129	T	3.00E-06	T	C	0.7474	0.6758	0.6657	0.7584	0.6943	0.70832	T	ANC	misc	3163
rs10876864	22951725	Tang XF	Vitiligo	allergy_autoimmune_immune	"1,117 Han Chinese ancestry cases, 1,701 Han Chinese ancestry controls"	EAS	12q13.2	12	56007301	1.18	G	8.00E-12	G	A	0.8427	0.3112	0.2133	0.4085	0.2618	0.4075	G	ANC	misc	2818
rs10911390	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	1q25.3	1	183647749	1.13	T	6.00E-06	C	T	0.18	0.036	0.1091	0.0318	0.0695	0.08528	C	DER	misc	5050
rs10911628	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	1q25.3	1	184680369	1.954	A	2.00E-13	C	A	0.1853	0.0706	0.0516	0.0646	0.047	0.08382	A	ANC	misc	3163
rs10946940	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	6p22.1	6	27592808	1.45	A	8.00E-09	A	G	0.7141	0.3991	0.4861	0.3579	0.4611	0.48366	A	ANC	misc	3163
rs10965235	20601957	Uno S	Endometriosis	allergy_autoimmune_immune	"1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls"	EAS	9p21.3	9	22115106	1.44	C	6.00E-12	C	A	0.4463	0.9553	0.8343	0.998	0.9223	0.83124	A	DER	misc	2741
rs11073328	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	15q14	15	38472642	1.935	T	1.00E-14	C	T	0.0159	0.1455	0.0992	0.1004	0.1646	0.10512	C	DER	misc	3163
rs11122895	23817571	Bonnelykke K	Allergic sensitization	allergy_autoimmune_immune	"5,789 European ancestry cases, 10,056 European ancestry controls"	EUR	2q13	2	111712578	1.09	T	2.00E-06	C	T	0.1369	0.2637	0.1389	0.4125	0.2802	0.24644	C	DER	misc	15845
rs11203203	20410501	Jin Y	Vitiligo	allergy_autoimmune_immune	"1,392 European ancestry cases, 2,629 European ancestry controls"	EUR	21q22.3	21	42416077	1.27	A	1.00E-09	G	A	0.1293	0.2205	0.0238	0.3519	0.2955	0.2042	A	ANC	misc	4021
rs1128334	20169177	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"314 Chinese ancestry cases, 1,484 Chinese ancestry controls"	EAS	11q24.3	11	128459064	1.29	T	2.00E-11	C	T	0.1067	0.1052	0.379	0.0974	0.1677	0.1712	C	DER	misc	1798
rs1129038	22561518	Jin Y	Vitiligo	allergy_autoimmune_immune	"418 European ancestry cases, 2,810 European ancestry controls"	EUR	15q13.1	15	28111713	1.22	C	4.00E-08	C	T	0.972	0.7968	0.999	0.3648	0.9305	0.81262	C	ANC	misc	3228
rs1150754	21408207	Chung SA	Systemic lupus erythematosus	allergy_autoimmune_immune	"811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls"	EUR	6p21.33	6	32082981	2.21	T	6.00E-29	C	T	0.0469	0.0432	0.0169	0.1113	0.0286	0.04938	C	DER	misc	6530
rs11574637	18204098	Hom G	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,311 European ancestry cases, 3,340 European ancestry controls"	EUR	16p11.2	16	31357553	1.33	C	3.00E-11	T	C	0.3101	0.1527	0.0149	0.1998	0.2791	0.19132	T	DER	misc	4651
rs11655550	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	17q12	17	39453870	1.475	C	7.00E-07	T	C	0.0098	0.1715	0.2391	0.2107	0.2106	0.16834	T	DER	misc	3163
rs1167796	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	7q11.23	7	75543861	1.2	G	2.00E-08	A	G	0.9425	0.7075	0.6736	0.5457	0.5644	0.68674	A	DER	misc	2252
rs117026326	24097066	Li Y	Sjogren's syndrome	allergy_autoimmune_immune	"542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls"	EAS	7q11.23	7	74711703	2.2	T	1.00E-53	C	T	8.00E-04	0.0043	0.0734	0.0159	0.0031	0.0195	C	DER	misc	1592
rs11717455	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	3p22.2	3	38802156	1.4085	T	7.00E-06	T	C	0.9554	0.8775	0.9345	0.8688	0.8456	0.89636	T	ANC	misc	5050
rs11966200	20526339	Quan C	Vitiligo	allergy_autoimmune_immune	"1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls"	EAS	6p21.33	6	31869289	1.9	T	1.00E-48	C	T	0.0893	0.0216	0.0159	0.0288	0.0112	0.03336	C	DER	misc	2546
rs12101261	21841780	Chu X	Graves' disease	allergy_autoimmune_immune	"1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls"	EAS	14q31.1	14	80984885	1.35	T	7.00E-24	C	T	0.3964	0.4813	0.5863	0.327	0.3088	0.41996	T	ANC	misc	2958
rs12191877	19169254	Nair RP	Psoriasis	allergy_autoimmune_immune	"1,359 European ancestry cases, 1,400 European ancestry controls"	EUR	6p21.33	6	31285148	2.64	T	1.00E-100	C	T	0.084	0.0836	0.0526	0.1431	0.1963	0.11192	C	DER	misc	2759
rs12529935	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EUR	6q15	6	90305320	1.3514	C	9.00E-06	C	T	0.9834	0.8876	0.8978	0.9105	0.8609	0.90804	T	DER	misc	5050
rs12580100	20953189	Stuart PE	Psoriasis	allergy_autoimmune_immune	"Up to 1,831 cases, up to 2,546 controls"	EUR	12q13.2	12	56045425	1.17	A	1.00E-06	A	G	0.8896	0.7507	0.7768	0.8668	0.6166	0.7801	A	ANC	misc	4377
rs12586317	20953189	Stuart PE	Psoriasis	allergy_autoimmune_immune	"Up to 1,831 cases, up to 2,546 controls"	EUR	14q13.2	14	35212966	1.15	T	2.00E-08	T	C	0.9849	0.8386	0.6796	0.7366	0.8098	0.8099	T	ANC	misc	4377
rs12599402	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	16p13.13	16	11096031	1.2821	T	5.00E-07	T	C	0.2965	0.6009	0.5694	0.5755	0.5521	0.51888	C	DER	misc	5050
rs1265883	23612905	Zhao SX	Graves' disease	allergy_autoimmune_immune	"1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls"	EAS	1q23.2	1	160495121	1.34	C	2.00E-18	C	A	0.0015	0.0259	0.122	0.0596	0.1084	0.06348	A	DER	misc	2910
rs12700667	21151130	Painter JN	Endometriosis	allergy_autoimmune_immune	"3,194 European ancestry cases, 7,060 European ancestry controls"	EUR	7p15.2	7	25862019	1.2	A	1.00E-09	G	A	0.3835	0.6441	0.1845	0.7227	0.4591	0.47878	G	DER	misc	10254
rs12720356	20953190	Strange A	Psoriasis	allergy_autoimmune_immune	"2,178 European ancestry cases, 5,175 European ancestry controls"	EUR	19p13.2	19	10359299	1.4	A	4.00E-11	A	C	0.997	0.9524	1	0.9076	0.9888	0.96916	A	ANC	misc	7353
rs12822507	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	"12p13.1, 12p13.2"	12	12620587	1.1628	A	2.00E-08	A	G	0.6725	0.5951	0.5694	0.6849	0.636	0.63158	A	ANC	misc	5050
rs12917712	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	16p11.2	16	29871169	1.07	T	7.00E-06	C	T	0.5333	0.2305	0.3333	0.3121	0.1595	0.31374	T	ANC	misc	5050
rs12993006	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	2q14.3	2	127000872	1.45	T	4.00E-06	C	T	0.5477	0.1081	0.005	0.2237	0.0511	0.18712	C	DER	misc	3163
rs13277113	18204098	Hom G	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,311 European ancestry cases, 3,340 European ancestry controls"	EUR	8p23.1	8	11491677	1.39	A	1.00E-10	G	A	0.1172	0.487	0.7093	0.2425	0.3466	0.38052	G	DER	misc	4651
rs13385731	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	2p22.3	2	33476823	1.43	T	1.00E-15	T	C	0.9508	0.9539	0.8274	0.9423	0.9407	0.92302	T	ANC	misc	2252
rs13394619	23104006	Nyholt DR	Endometriosis	allergy_autoimmune_immune	"3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls"	MIX	2p25.1	2	11587381	1.15	G	6.00E-09	G	A	0.084	0.4107	0.5119	0.4722	0.5317	0.4021	A	DER	misc	13997
rs1385374	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	12q24.33	12	128816149	1.26	T	2.00E-11	C	T	8.00E-04	0.2219	0.1905	0.1113	0.2025	0.1454	C	DER	misc	2252
rs1393350	20410501	Jin Y	Vitiligo	allergy_autoimmune_immune	"1,392 European ancestry cases, 2,629 European ancestry controls"	EUR	11q14.3	11	89277878	1.53	G	2.00E-18	G	A	0.9917	0.8775	0.997	0.7565	0.9458	0.9137	G	ANC	misc	4021
rs1438673	24388013	Ferreira MA	Asthma and hay fever	allergy_autoimmune_immune	"6,685 European ancestry cases, 14,091 European ancestry controls"	EUR	5q22.1	5	111131801	1.16	C	3.00E-11	C	T	0.1263	0.3487	0.4077	0.501	0.1605	0.30884	T	DER	misc	20776
rs1470579	22233651	Kwak SH	Diabetes (gestational)	allergy_autoimmune_immune	"468 Korean ancestry cases, 1,242 Korean ancestry controls"	EAS	3q27.2	3	185811292	1.332	C	2.00E-07	A	C	0.848	0.3026	0.2639	0.3042	0.4571	0.43516	C	ANC	misc	1710
rs16872571	22561518	Jin Y	Vitiligo	allergy_autoimmune_immune	"418 European ancestry cases, 2,810 European ancestry controls"	EUR	4p16.1	4	10725229	1.21	C	2.00E-08	C	T	0.6135	0.5951	0.5069	0.5427	0.7607	0.60378	C	ANC	misc	3228
rs16887812	23817571	Bonnelykke K	Allergic sensitization	allergy_autoimmune_immune	"5,789 European ancestry cases, 10,056 European ancestry controls"	EUR	6p12.1	6	56345966	1.1	T	7.00E-06	C	T	0.3124	0.2925	0.1577	0.3668	0.3793	0.30174	C	DER	misc	15845
rs1701704	20596022	Petukhova L	Alopecia areata	allergy_autoimmune_immune	"Up to 1,054 European ancestry cases, 3,278 European ancestry controls"	EUR	12q13.2	12	56018703	1.34	G	3.00E-08	T	G	0.0825	0.2046	0.2004	0.328	0.2331	0.20972	T	DER	misc	4332
rs17294280	24388013	Ferreira MA	Asthma and hay fever	allergy_autoimmune_immune	"6,685 European ancestry cases, 14,091 European ancestry controls"	EUR	15q22.33	15	67175947	1.18	G	4.00E-09	A	G	0.0227	0.1499	0.0288	0.2505	0.1892	0.12822	A	DER	misc	20776
rs17454584	23817571	Bonnelykke K	Allergic sensitization	allergy_autoimmune_immune	"5,789 European ancestry cases, 10,056 European ancestry controls"	EUR	4q27	4	122432277	1.15	G	6.00E-10	A	G	0.0068	0.1297	0.121	0.2396	0.1452	0.12846	A	DER	misc	15845
rs17513503	22036096	Ramasamy A	Allergic rhinitis	allergy_autoimmune_immune	"3,933 European ancestry cases, 8,965 European ancestry controls"	EUR	5q22.1	5	110810746	1.28	G	7.00E-07	C	G	0.1369	0.0605	0.002	0.0905	0.0194	0.06186	C	DER	misc	12898
rs17616434	23817571	Bonnelykke K	Allergic sensitization	allergy_autoimmune_immune	"5,789 European ancestry cases, 10,056 European ancestry controls"	EUR	4p14	4	38811255	1.23	T	5.00E-11	T	C	0.1029	0.5303	0.3958	0.7157	0.5245	0.45384	C	DER	misc	15845
rs17716942	20953190	Strange A	Psoriasis	allergy_autoimmune_immune	"2,178 European ancestry cases, 5,175 European ancestry controls"	EUR	2q24.2	2	162404181	1.29	T	1.00E-13	T	C	0.9932	0.9337	0.998	0.839	0.9652	0.94582	T	ANC	misc	7353
rs17728338	19169254	Nair RP	Psoriasis	allergy_autoimmune_immune	"1,359 European ancestry cases, 1,400 European ancestry controls"	EUR	5q33.1	5	151098757	1.59	A	1.00E-20	G	A	0.1029	0.049	0.1042	0.0696	0.1534	0.09582	G	DER	misc	2759
rs1837253	24388013	Ferreira MA	Asthma and hay fever	allergy_autoimmune_immune	"6,685 European ancestry cases, 14,091 European ancestry controls"	EUR	5q22.1	5	111066174	1.17	C	1.00E-09	T	C	0.6876	0.732	0.3938	0.7475	0.5399	0.62016	T	DER	misc	20776
rs1898671	22036096	Ramasamy A	Allergic rhinitis	allergy_autoimmune_immune	"3,933 European ancestry cases, 8,965 European ancestry controls"	EUR	5q22.1	5	111072304	1.15	T	5.00E-06	C	T	0.0514	0.2334	0.0446	0.3628	0.0736	0.15316	C	DER	misc	12898
rs1913517	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	10q11.23	10	48911009	1.24	A	7.00E-12	A	G	0.3177	0.5216	0.2758	0.5109	0.3558	0.39636	A	ANC	misc	2252
rs20541	19169254	Nair RP	Psoriasis	allergy_autoimmune_immune	"1,359 European ancestry cases, 1,400 European ancestry controls"	EUR	5q31.1	5	132660272	1.27	G	5.00E-15	A	G	0.8101	0.6196	0.6399	0.7932	0.728	0.71816	G	ANC	misc	2759
rs2066808	19169254	Nair RP	Psoriasis	allergy_autoimmune_immune	"1,359 European ancestry cases, 1,400 European ancestry controls"	EUR	12q13.3	12	56344189	1.34	A	1.00E-09	A	G	0.4153	0.8847	0.9643	0.9304	0.9806	0.83506	G	DER	misc	2759
rs2082412	19169254	Nair RP	Psoriasis	allergy_autoimmune_immune	"1,359 European ancestry cases, 1,400 European ancestry controls"	EUR	5q33.3	5	159290781	1.44	G	2.00E-28	G	A	0.5946	0.6484	0.5139	0.7744	0.6278	0.63182	G	ANC	misc	2759
rs2111485	22561518	Jin Y	Vitiligo	allergy_autoimmune_immune	"418 European ancestry cases, 2,810 European ancestry controls"	EUR	2q24.2	2	162254026	1.3	G	5.00E-15	A	G	0.1762	0.3948	0.1687	0.6024	0.4254	0.3535	A	DER	misc	3228
rs2155219	22036096	Ramasamy A	Allergic rhinitis	allergy_autoimmune_immune	"3,933 European ancestry cases, 8,965 European ancestry controls"	EUR	11q13.5	11	76588150	1.17	T	4.00E-08	G	T	0.5923	0.5043	0.5268	0.4911	0.5174	0.52638	T	ANC	misc	12898
rs2155219	23817571	Bonnelykke K	Allergic sensitization	allergy_autoimmune_immune	"5,789 European ancestry cases, 10,056 European ancestry controls"	EUR	11q13.5	11	76588150	1.18	T	1.00E-18	G	T	0.5923	0.5043	0.5268	0.4911	0.5174	0.52638	T	ANC	misc	15845
rs216518	22036096	Ramasamy A	Allergic rhinitis	allergy_autoimmune_immune	"3,933 European ancestry cases, 8,965 European ancestry controls"	EUR	14q23.1	14	60216712	1.21	A	2.00E-06	C	A	0.1921	0.1124	0.0794	0.1521	0.3436	0.17592	C	DER	misc	12898
rs2201841	19169254	Nair RP	Psoriasis	allergy_autoimmune_immune	"1,359 European ancestry cases, 1,400 European ancestry controls"	EUR	"1p31.3, 1p31.3[rs11209003]; 1p31.3[rs11209002]"	1	67228519	1.13	G	3.00E-08	A	G	0.1415	0.2421	0.7331	0.3002	0.5971	0.4028	A	DER	misc	2759
rs2205960	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	1q25.1	1	173222336	1.46	T	3.00E-32	G	T	0.0204	0.3084	0.2341	0.2266	0.2055	0.199	G	DER	misc	2252
rs2230926	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	6q23.3	6	137874929	1.72	G	1.00E-17	T	G	0.4092	0.0778	0.0506	0.0239	0.0297	0.11824	T	DER	misc	2252
rs2236313	20526339	Quan C	Vitiligo	allergy_autoimmune_immune	"1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls"	EAS	6q27	6	166946901	1.2	T	1.00E-16	T	C	0.3722	0.4121	0.3562	0.5616	0.3374	0.4079	C	DER	misc	2546
rs2249625	24236485	Cornejo-Garcia JA	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	allergy_autoimmune_immune	"112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls"	MIX	6q13	6	72197050	2.24	G	5.00E-06	A	G	0.7897	0.6023	0.8185	0.4483	0.4796	0.62768	A	DER	misc	457
rs2252996	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	10q22.1	10	71356185	1.2195	A	3.00E-06	G	A	0.8253	0.647	0.6657	0.8847	0.7219	0.74892	A	ANC	misc	5050
rs2254546	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	8p23.1	8	11486171	1.4925	G	2.00E-13	A	G	0.8699	0.9107	0.7579	0.8429	0.8323	0.84274	G	ANC	misc	5050
rs2270450	25429627	Oryoji D	Hashimoto thyroiditis versus Graves' disease	allergy_autoimmune_immune	"263 Japanese ancestry Hashimoto thyroiditis cases, 260 Japanese ancestry Graveså´ÌÜ_å´ÌÜ_å´ÌÜ_ disease cases"	EAS	6p12.3	6	46677138	1.75	T	1.00E-06	C	T	0.2345	0.3905	0.2202	0.2763	0.5225	0.3288	C	DER	misc	523
rs2273017	21900946	Nakabayashi K	Graves' disease	allergy_autoimmune_immune	"1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls"	EAS	6p21.32	6	32369853	1.53	A	2.00E-22	G	A	0.2572	0.5937	0.6121	0.5686	0.592	0.52472	G	DER	misc	3837
rs2294025	23612905	Zhao SX	Graves' disease	allergy_autoimmune_immune	"1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls"	EAS	8q24.22	8	133133268	1.16	A	8.00E-09	G	A	0.5454	0.4914	0.1657	0.4831	0.2618	0.38948	G	DER	misc	2910
rs2303745	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	19p13.11	19	17309480	1.07	T	1.00E-06	G	T	0.9607	0.67	0.4206	0.8658	0.7403	0.73148	T	ANC	misc	5050
rs2395029	18369459	Liu Y	Psoriasis	allergy_autoimmune_immune	"218 European ancestry cases, 519 European ancestry controls"	EUR	6p21.33	6	31464003	4.1	G	2.00E-26	T	G	0.0045	0.0202	0.0119	0.0437	0.093	0.03466	T	DER	misc	737
rs240993	20953190	Strange A	Psoriasis	allergy_autoimmune_immune	"2,178 European ancestry cases, 5,175 European ancestry controls"	EUR	6q21	6	111352511	1.25	T	5.00E-20	T	C	0.9032	0.4467	0.5794	0.2883	0.3681	0.51714	T	ANC	misc	7353
rs2456973	22561518	Jin Y	Vitiligo	allergy_autoimmune_immune	"418 European ancestry cases, 2,810 European ancestry controls"	EUR	12q13.2	12	56023144	1.29	C	3.00E-14	A	C	0.0983	0.2046	0.2004	0.329	0.2331	0.21308	A	DER	misc	3228
rs2476601	20410501	Jin Y	Vitiligo	allergy_autoimmune_immune	"1,392 European ancestry cases, 2,629 European ancestry controls"	EUR	1p13.2	1	113834946	1.39	A	1.00E-07	A	G	0.003	0.036	0	0.0944	0.0133	0.02934	G	DER	misc	4021
rs2546890	20953188	Ellinghaus E	Psoriasis	allergy_autoimmune_immune	"472 European ancestry cases, 1,146 European ancestry controls"	EUR	5q33.3	5	159332892	1.54	A	1.00E-20	A	G	0.3495	0.4121	0.4087	0.4911	0.5634	0.44496	A	ANC	misc	1618
rs2606618	25085501	Bunyavanich S	Allergic rhinitis in non-asthmatics	allergy_autoimmune_immune	"249 European ancestry cases, 164 Latino cases, 248 African American/Afro-Caribbean cases, 674 European ancestry controls, 588 Latino controls, 464 African American/Afro-Caribbean controls"	MIX	6q22.31	6	122095195	1.6	T	4.00E-07	T	G	0.7821	0.647	0.6994	0.8519	0.7342	0.74292	T	ANC	misc	2387
rs2669010	21408207	Chung SA	Systemic lupus erythematosus	allergy_autoimmune_immune	"811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls"	EUR	12q21.2	12	76615280	1.28	A	5.00E-06	A	G	0.618	0.6037	0.3472	0.4304	0.3937	0.4786	G	DER	misc	6530
rs2736340	21408207	Chung SA	Systemic lupus erythematosus	allergy_autoimmune_immune	"811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls"	EUR	8p23.1	8	11486464	1.38	T	3.00E-07	C	T	0.1188	0.487	0.7212	0.2435	0.3507	0.38424	C	DER	misc	6530
rs27524	20953190	Strange A	Psoriasis	allergy_autoimmune_immune	"2,178 European ancestry cases, 5,175 European ancestry controls"	EUR	5q15	5	96766240	1.13	A	3.00E-11	A	G	0.4607	0.2824	0.3651	0.3658	0.3978	0.37436	A	ANC	misc	7353
rs2764208	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	6p21.31	6	34746545	1.28	G	7.00E-06	A	G	0.736	0.3098	0.4464	0.336	0.2924	0.42412	A	DER	misc	3163
rs2785197	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	11p13	11	35071523	1.2346	G	2.00E-07	A	G	0.2958	0.6513	0.752	0.5417	0.7209	0.59234	A	DER	misc	5050
rs3118470	20596022	Petukhova L	Alopecia areata	allergy_autoimmune_immune	"Up to 1,054 European ancestry cases, 3,278 European ancestry controls"	EUR	10p15.1	10	6059750	1.41	C	2.00E-12	T	C	0.1263	0.2939	0.4931	0.3241	0.41	0.32948	T	DER	misc	4332
rs3130320	21408207	Chung SA	Systemic lupus erythematosus	allergy_autoimmune_immune	"811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls"	EUR	6p21.32	6	32255481	1.39	T	3.00E-06	T	C	0.2738	0.1844	0.2411	0.3489	0.2771	0.26506	C	DER	misc	6530
rs3131379	18204446	Harley JB	Systemic lupus erythematosus	allergy_autoimmune_immune	"720 European ancestry female cases, 2,337 European ancestry female controls"	EUR	6p21.33	6	31753256	2.36	A	2.00E-52	G	A	0.0567	0.0274	0	0.0746	0	0.03174	G	DER	misc	3057
rs3132613	21900946	Nakabayashi K	Graves' disease	allergy_autoimmune_immune	"1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls"	EAS	6p21.33	6	30569829	1.43	C	1.00E-13	C	G	0.1626	0.3862	0.3016	0.3101	0.1605	0.2642	G	DER	misc	3837
rs3213094	19169255	Zhang XJ	Psoriasis	allergy_autoimmune_immune	"1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls"	EAS	5q33.3	5	159323761	1.28	T	3.00E-26	C	T	0.3555	0.3444	0.5109	0.2227	0.3763	0.36196	C	DER	misc	2271
rs3213758	23678272	Cheong KA	Vitiligo (non-segmental)	allergy_autoimmune_immune	"20 Korean ancestry cases, 192 Korean ancestry controls"	EAS	16q12.2	16	53605526	2.77	T	6.00E-11	C	T	0.0068	0.0461	0.3125	0.0636	0.0777	0.10134	C	DER	misc	212
rs340630	22291604	Okada Y	Systemic lupus erythematosus	allergy_autoimmune_immune	"891 Japanese ancestry cases, 3,384 Japanese ancestry controls"	EAS	4q21.3	4	87037243	1.21	A	8.00E-09	G	A	0.0575	0.5548	0.5069	0.5378	0.6636	0.46412	G	DER	misc	4275
rs34330	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	12p13.1	12	12717761	1.1905	C	5.00E-12	T	C	0.5265	0.7824	0.5317	0.7545	0.7975	0.67852	T	DER	misc	5050
rs370409	21841780	Chu X	Graves' disease	allergy_autoimmune_immune	"1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls"	EAS	6q15	6	90212021	1.15	A	2.00E-06	C	A	0.9856	0.8012	0.631	0.6899	0.7873	0.779	A	ANC	misc	2958
rs3734266	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	6p21.31	6	34855410	1.56	C	1.00E-12	T	C	0.2504	0.111	0.1339	0.1511	0.0951	0.1483	T	DER	misc	5050
rs3757247	22561518	Jin Y	Vitiligo	allergy_autoimmune_immune	"418 European ancestry cases, 2,810 European ancestry controls"	EUR	6q15	6	90247744	1.2	T	3.00E-08	C	T	0.1793	0.4899	0.4871	0.4881	0.4325	0.41538	T	ANC	misc	3228
rs3761959	21841780	Chu X	Graves' disease	allergy_autoimmune_immune	"1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls"	EAS	1q23.1	1	157699488	1.23	T	2.00E-13	C	T	0.618	0.4395	0.4355	0.4742	0.2832	0.45008	T	ANC	misc	2958
rs3771175	23817571	Bonnelykke K	Allergic sensitization	allergy_autoimmune_immune	"5,789 European ancestry cases, 10,056 European ancestry controls"	EUR	2q12.1	2	102343750	1.2	T	5.00E-11	T	A	0.7012	0.8804	0.9087	0.8489	0.9202	0.85188	T	ANC	misc	15845
rs3806156	20410501	Jin Y	Vitiligo	allergy_autoimmune_immune	"1,392 European ancestry cases, 2,629 European ancestry controls"	EUR	6p21.32	6	32405921	1.42	T	7.00E-19	G	T	0.3222	0.4683	0.4296	0.3738	0.4356	0.4059	G	DER	misc	4021
rs3814231	22561518	Jin Y	Vitiligo	allergy_autoimmune_immune	"418 European ancestry cases, 2,810 European ancestry controls"	EUR	10q25.3	10	113721259	1.23	C	4.00E-08	C	T	0.8744	0.7392	0.5873	0.7306	0.7198	0.73026	C	ANC	misc	3228
rs3823355	20410501	Jin Y	Vitiligo	allergy_autoimmune_immune	"1,392 European ancestry cases, 2,629 European ancestry controls"	EUR	6p22.1	6	29974306	1.5	T	9.00E-23	C	T	0.1952	0.3271	0.3085	0.3241	0.1667	0.26432	C	DER	misc	4021
rs3893464	21900946	Nakabayashi K	Graves' disease	allergy_autoimmune_immune	"1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls"	EAS	6p22.1	6	29967473	1.53	G	2.00E-20	G	A	0.5885	0.585	0.376	0.5497	0.3405	0.48794	G	ANC	misc	3837
rs4085613	19169255	Zhang XJ	Psoriasis	allergy_autoimmune_immune	"1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls"	EAS	1q21.3	1	152577542	1.32	T	7.00E-30	T	G	0.5779	0.3905	0.3671	0.3549	0.3753	0.41314	T	ANC	misc	2271
rs4248154	21900946	Nakabayashi K	Graves' disease	allergy_autoimmune_immune	"1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls"	EAS	6p21.33	6	31034839	1.38	C	1.00E-13	C	T	0.8911	0.7752	0.6954	0.8231	0.7157	0.7801	T	DER	misc	3837
rs4313034	21900946	Nakabayashi K	Graves' disease	allergy_autoimmune_immune	"1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls"	EAS	6p22.1	6	30006148	1.67	T	2.00E-15	C	T	0.6838	0.7637	0.8313	0.841	0.819	0.78776	T	ANC	misc	3837
rs4409785	22561518	Jin Y	Vitiligo	allergy_autoimmune_immune	"418 European ancestry cases, 2,810 European ancestry controls"	EUR	11q21	11	95578258	1.34	C	2.00E-13	T	C	0.0053	0.121	0.1012	0.1899	0.2474	0.13296	T	DER	misc	3228
rs4410871	23817571	Bonnelykke K	Allergic sensitization	allergy_autoimmune_immune	"5,789 European ancestry cases, 10,056 European ancestry controls"	EUR	8q24.21	8	127802783	1.14	T	5.00E-10	T	C	0.1422	0.4006	0.3681	0.3072	0.2822	0.30006	C	DER	misc	15845
rs4522865	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	4q24	4	101794731	1.3514	A	5.00E-06	G	A	0.7632	0.5043	0.5585	0.5567	0.7249	0.62152	A	ANC	misc	5050
rs4544377	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	2q24.1	2	155400189	1.832	A	2.00E-06	G	A	0.6755	0.8545	0.8294	0.8608	0.8252	0.80908	A	ANC	misc	3163
rs458017	20953190	Strange A	Psoriasis	allergy_autoimmune_immune	"2,178 European ancestry cases, 5,175 European ancestry controls"	EUR	"6q21, 6q21[rs458017]; 6q21[rs465969]"	6	111374888	1.37	C	2.00E-16	T	C	0.0401	0.0677	0.001	0.0646	0.0368	0.04204	T	DER	misc	7353
rs4622329	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	12q23.2	12	101928157	1.1905	A	9.00E-12	G	A	0.7065	0.3285	0.6022	0.3469	0.4755	0.49192	G	DER	misc	5050
rs4639966	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	11q23.3	11	118702810	1.29	C	1.00E-16	T	C	0.2057	0.1671	0.4127	0.2495	0.3323	0.27346	T	DER	misc	2252
rs4649203	20953190	Strange A	Psoriasis	allergy_autoimmune_immune	"2,178 European ancestry cases, 5,175 European ancestry controls"	EUR	1p36.11	1	24193430	1.13	A	7.00E-08	G	A	0.2511	0.7637	0.623	0.7247	0.6431	0.60112	G	DER	misc	7353
rs4684256	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	3p26.3	3	1590669	1.48	T	1.00E-07	C	T	0.0537	0.1239	0.0099	0.2714	0.1217	0.11612	C	DER	misc	3163
rs4713693	21900946	Nakabayashi K	Graves' disease	allergy_autoimmune_immune	"1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls"	EAS	6p21.31	6	33850152	1.4	T	7.00E-13	T	C	0.4501	0.6427	0.7431	0.5408	0.6861	0.61256	T	ANC	misc	3837
rs4724100	22036096	Ramasamy A	Allergic rhinitis	allergy_autoimmune_immune	"3,933 European ancestry cases, 8,965 European ancestry controls"	EUR	7p14.1	7	42225080	1.14	C	2.00E-06	T	C	0.0658	0.4193	0.6845	0.4195	0.4877	0.41536	T	DER	misc	12898
rs4728142	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	7q32.1	7	128933913	1.43	A	8.00E-19	G	A	0.2398	0.3098	0.1042	0.4493	0.3947	0.29956	G	DER	misc	2252
rs4766578	22561518	Jin Y	Vitiligo	allergy_autoimmune_immune	"418 European ancestry cases, 2,810 European ancestry controls"	EUR	12q24.12	12	111466567	1.32	T	4.00E-18	T	A	0.0189	0.2594	0.003	0.4771	0.0706	0.1658	A	DER	misc	3228
rs4795067	20953189	Stuart PE	Psoriasis	allergy_autoimmune_immune	"Up to 1,831 cases, up to 2,546 controls"	EUR	17q11.2	17	27779649	1.19	G	4.00E-11	A	G	0.1974	0.3444	0.2292	0.3588	0.4448	0.31492	A	DER	misc	4377
rs4833095	24388013	Ferreira MA	Asthma and hay fever	allergy_autoimmune_immune	"6,685 European ancestry cases, 14,091 European ancestry controls"	EUR	4p14	4	38798089	1.2	T	5.00E-12	T	C	0.1203	0.5274	0.4008	0.7197	0.4877	0.45118	C	DER	misc	20776
rs4852324	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	2p13.1	2	73975451	1.2658	T	6.00E-14	T	C	0.5756	0.8386	0.8145	0.9115	0.9223	0.8125	T	ANC	misc	5050
rs4908760	20410501	Jin Y	Vitiligo	allergy_autoimmune_immune	"1,392 European ancestry cases, 2,629 European ancestry controls"	EUR	1p36.23	1	8466082	1.36	G	7.00E-15	G	A	0.1611	0.379	0.1696	0.4155	0.4949	0.32402	A	DER	misc	4021
rs4917014	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	7p12.2	7	50266267	1.39	T	3.00E-23	T	G	0.9554	0.4928	0.6468	0.6461	0.7229	0.6928	T	ANC	misc	2252
rs4947296	21841780	Chu X	Graves' disease	allergy_autoimmune_immune	"1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls"	EAS	6p21.33	6	31090401	1.77	C	4.00E-51	T	C	0.0151	0.098	0.2202	0.0755	0.1288	0.10752	T	DER	misc	2958
rs4948496	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	10q21.2	10	62045858	1.1765	C	5.00E-11	T	C	0.705	0.5908	0.6349	0.497	0.6125	0.60804	C	ANC	misc	5050
rs495337	20953189	Stuart PE	Psoriasis	allergy_autoimmune_immune	"Up to 1,831 cases, up to 2,546 controls"	EUR	"20q13.13, 20q13.13[rs2235617]; 20q13.13[rs495337]"	20	49905793	1.21	G	2.00E-07	G	A	0.9009	0.536	0.6597	0.6024	0.3896	0.61772	G	ANC	misc	4377
rs4956211	21408207	Chung SA	Systemic lupus erythematosus	allergy_autoimmune_immune	"811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls"	EUR	4q25	4	108801970	1.33	A	1.00E-06	G	A	0.3495	0.3545	0.2679	0.3847	0.4591	0.36314	A	ANC	misc	6530
rs5029939	24097066	Li Y	Sjogren's syndrome	allergy_autoimmune_immune	"542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls"	EAS	6q23.3	6	137874586	1.67	G	8.00E-09	C	G	0.4085	0.0778	0.0506	0.0239	0.0307	0.1183	G	ANC	misc	1592
rs505922	21841780	Chu X	Graves' disease	allergy_autoimmune_immune	"1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls"	EAS	9q34.2	9	133273813	1.13	T	8.00E-06	T	C	0.6346	0.781	0.619	0.6322	0.6074	0.65484	T	ANC	misc	2958
rs548234	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	6q21	6	106120159	1.25	C	5.00E-12	C	T	0.0552	0.1974	0.2778	0.3141	0.2147	0.21184	T	DER	misc	2252
rs558702	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	6p21.33	6	31902549	2.276	A	8.00E-21	G	A	0.059	0.0231	0	0.0736	0	0.03114	G	DER	misc	3163
rs59374417	22561518	Jin Y	Vitiligo	allergy_autoimmune_immune	"418 European ancestry cases, 2,810 European ancestry controls"	EUR	3q13.33	3	119569567	1.34	C	4.00E-10	A	C	0.2655	0.1023	0.2877	0.1153	0.3067	0.2155	A	DER	misc	3228
rs6049839	21408207	Chung SA	Systemic lupus erythematosus	allergy_autoimmune_immune	"811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls"	EUR	20p13	20	2537919	1.37	T	8.00E-06	G	T	0.2262	0.4582	0.2907	0.4324	0.4755	0.3766	G	DER	misc	6530
rs6084875	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	20p13	20	4762059	1.356	A	2.00E-06	G	A	0.3593	0.4625	0.4256	0.3837	0.3037	0.38696	A	ANC	misc	3163
rs610604	19169254	Nair RP	Psoriasis	allergy_autoimmune_immune	"1,359 European ancestry cases, 1,400 European ancestry controls"	EUR	6q23.3	6	137878280	1.19	G	9.00E-12	G	T	0.6823	0.3948	0.1002	0.338	0.3262	0.3683	G	ANC	misc	2759
rs62026376	24388013	Ferreira MA	Asthma and hay fever	allergy_autoimmune_immune	"6,685 European ancestry cases, 14,091 European ancestry controls"	EUR	16p13.13	16	11134855	1.17	C	1.00E-08	C	T	0.9864	0.8256	0.9296	0.7495	0.7342	0.84506	C	ANC	misc	20776
rs638893	22951725	Tang XF	Vitiligo	allergy_autoimmune_immune	"1,117 Han Chinese ancestry cases, 1,701 Han Chinese ancestry controls"	EAS	11q23.3	11	118827828	1.22	G	2.00E-09	G	A	0.3767	0.1369	0.1696	0.168	0.1922	0.20868	G	ANC	misc	2818
rs6445975	18204446	Harley JB	Systemic lupus erythematosus	allergy_autoimmune_immune	"720 European ancestry female cases, 2,337 European ancestry female controls"	EAS	3p14.3	3	58384450	1.25	G	7.00E-09	G	T	0.5749	0.3545	0.2034	0.2614	0.2474	0.32832	T	DER	misc	3057
rs6510827	22561518	Jin Y	Vitiligo	allergy_autoimmune_immune	"418 European ancestry cases, 2,810 European ancestry controls"	EUR	19p13.3	19	4830616	1.19	T	9.00E-08	T	C	0.1868	0.3718	0.4216	0.4046	0.2975	0.33646	T	ANC	misc	3228
rs6542095	20844546	Adachi S	Endometriosis	allergy_autoimmune_immune	"696 Japanese ancestry cases, 825 Japanese ancestry controls"	EAS	"2q13, 2q14.1"	2	112771606	1.5	C	3.00E-06	C	T	0.1952	0.4755	0.7054	0.3221	0.2843	0.3965	T	DER	misc	1521
rs6586513	22036096	Ramasamy A	Allergic rhinitis	allergy_autoimmune_immune	"3,933 European ancestry cases, 8,965 European ancestry controls"	EUR	1p36.13	1	16889836	1.24	C	4.00E-06	C	A	0.4092	0.2594	0.1379	0.1899	0.2648	0.25224	A	DER	misc	12898
rs6590330	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	11q24.3	11	128441164	1.37	A	2.00E-25	G	A	0.2874	0.1268	0.378	0.0994	0.1626	0.21084	G	DER	misc	2252
rs6705628	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	2p13.1	2	73981235	1.3333	C	7.00E-17	C	T	0.6505	0.889	0.8442	0.9911	0.955	0.86596	C	ANC	misc	5050
rs6804441	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	3q13.33	3	119542097	1.2658	A	3.00E-16	A	G	0.8941	0.9107	0.6498	0.8519	0.7638	0.81406	A	ANC	misc	5050
rs6809854	20953190	Strange A	Psoriasis	allergy_autoimmune_immune	"2,178 European ancestry cases, 5,175 European ancestry controls"	EUR	3p24.3	3	18742931	1.14	G	1.00E-07	A	G	0.2088	0.3084	0.0734	0.1978	0.1534	0.18836	A	DER	misc	7353
rs6832151	21841780	Chu X	Graves' disease	allergy_autoimmune_immune	"1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls"	EAS	4p14	4	40301616	1.24	G	1.00E-13	G	T	0.3222	0.2579	0.378	0.2773	0.1687	0.28082	T	DER	misc	2958
rs6898653	22036096	Ramasamy A	Allergic rhinitis	allergy_autoimmune_immune	"3,933 European ancestry cases, 8,965 European ancestry controls"	EUR	5q23.1	5	116639960	1.23	G	1.00E-06	A	G	0.4349	0.1844	0.1895	0.2068	0.2239	0.2479	A	DER	misc	12898
rs6946131	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	7p11.2	7	54715680	1.387	T	2.00E-06	T	C	0.4917	0.6614	0.7262	0.5298	0.453	0.57242	C	DER	misc	3163
rs694739	20596022	Petukhova L	Alopecia areata	allergy_autoimmune_immune	"Up to 1,054 European ancestry cases, 3,278 European ancestry controls"	EUR	11q13.1	11	64329761	1.33	A	4.00E-07	A	G	0.9735	0.6225	0.8423	0.6193	0.774	0.76632	A	ANC	misc	4332
rs7009110	24388013	Ferreira MA	Asthma and hay fever	allergy_autoimmune_immune	"6,685 European ancestry cases, 14,091 European ancestry controls"	EUR	8q21.13	8	80379644	1.14	T	4.00E-09	T	C	0.7118	0.4769	0.5536	0.3827	0.4632	0.51764	T	ANC	misc	20776
rs702873	20953190	Strange A	Psoriasis	allergy_autoimmune_immune	"2,178 European ancestry cases, 5,175 European ancestry controls"	EUR	2p16.1	2	60854407	1.12	C	4.00E-09	C	T	0.8086	0.6542	0.8849	0.5527	0.8088	0.74184	T	DER	misc	7353
rs706779	20410501	Jin Y	Vitiligo	allergy_autoimmune_immune	"1,392 European ancestry cases, 2,629 European ancestry controls"	EUR	10p15.1	10	6056861	1.27	T	3.00E-09	T	C	0.5061	0.4294	0.625	0.5189	0.6084	0.53756	T	ANC	misc	4021
rs7097397	20169177	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"314 Chinese ancestry cases, 1,484 Chinese ancestry controls"	EAS	10q11.23	10	48817351	1.3	G	8.00E-12	G	A	0.9017	0.6729	0.3065	0.6044	0.6503	0.62716	G	ANC	misc	1798
rs7186852	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	16p11.2	16	30624338	1.29	A	3.00E-07	A	G	0.1936	0.7133	0.8839	0.6312	0.2556	0.53552	G	DER	misc	2252
rs7197475	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	16p11.2	16	30631546	1.31	T	3.00E-08	C	T	0.8033	0.2882	0.1161	0.3738	0.7444	0.46516	T	ANC	misc	2252
rs72699186	24388013	Ferreira MA	Asthma and hay fever	allergy_autoimmune_immune	"6,685 European ancestry cases, 14,091 European ancestry controls"	EUR	9p24.1	9	6175855	1.26	T	2.00E-09	A	T	0.121	0.1225	0.002	0.164	0.1421	0.11032	A	DER	misc	20776
rs729302	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	7q32.1	7	128928906	1.4706	A	1.00E-09	A	C	0.8177	0.8055	0.6825	0.674	0.7035	0.73664	C	DER	misc	5050
rs7329174	21044949	Yang J	Systemic lupus erythematosus	allergy_autoimmune_immune	"612 Chinese ancestry cases, 1,160 Chinese ancestry controls"	EAS	13q14.11	13	40983974	1.26	G	1.00E-08	A	G	0.0719	0.0821	0.247	0.0179	0.1207	0.10792	A	DER	misc	1772
rs742108	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	6q21	6	106135045	1.24	A	4.00E-06	G	A	0.0257	0.1671	0.3373	0.163	0.3333	0.20528	G	DER	misc	5050
rs7574865	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	"2q32.2, 2q32.3"	2	191099907	1.51	T	5.00E-42	T	G	0.1165	0.3617	0.3472	0.2296	0.2996	0.27092	T	ANC	misc	2252
rs7682241	20596022	Petukhova L	Alopecia areata	allergy_autoimmune_immune	"Up to 1,054 European ancestry cases, 3,278 European ancestry controls"	EUR	4q27	4	122602720	1.34	T	4.00E-08	G	T	0.1218	0.4265	0.3452	0.335	0.5194	0.34958	G	DER	misc	4332
rs7754840	22233651	Kwak SH	Diabetes (gestational)	allergy_autoimmune_immune	"468 Korean ancestry cases, 1,242 Korean ancestry controls"	EAS	6p22.3	6	20661019	1.518	C	7.00E-16	G	C	0.6316	0.3184	0.4008	0.3181	0.2556	0.3849	G	DER	misc	1710
rs7812879	19838193	Han JW	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls"	EAS	8p23.1	8	11482672	1.45	C	2.00E-24	T	C	0.7769	0.9049	0.7629	0.841	0.8323	0.8236	C	ANC	misc	2252
rs8008961	24236485	Cornejo-Garcia JA	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	allergy_autoimmune_immune	"112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls"	MIX	14q24.1	14	68285926	2.44	T	6.00E-06	C	T	0.3593	0.196	0.0129	0.341	0.2004	0.22192	C	DER	misc	457
rs801112	20844546	Adachi S	Endometriosis	allergy_autoimmune_immune	"696 Japanese ancestry cases, 825 Japanese ancestry controls"	EAS	1q42.13	1	228860875	1.65	C	5.00E-06	T	C	0.3374	0.072	0.1825	0.007	0.0164	0.12306	T	DER	misc	1521
rs8016947	20953190	Strange A	Psoriasis	allergy_autoimmune_immune	"2,178 European ancestry cases, 5,175 European ancestry controls"	EUR	14q13.2	14	35363460	1.19	G	2.00E-11	T	G	0.6467	0.7248	0.5923	0.5288	0.5951	0.61754	G	ANC	misc	7353
rs8023715	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	15q26.2	15	97064451	1.812	A	1.00E-08	C	A	0.1021	0.072	0.0446	0.0865	0.0542	0.07188	T	DER	misc	3163
rs8192917	20410501	Jin Y	Vitiligo	allergy_autoimmune_immune	"1,392 European ancestry cases, 2,629 European ancestry controls"	EUR	14q12	14	24632954	1.28	C	3.00E-08	C	T	0.4395	0.219	0.2867	0.2475	0.3354	0.30562	C	ANC	misc	4021
rs842636	20953189	Stuart PE	Psoriasis	allergy_autoimmune_immune	"Up to 1,831 cases, up to 2,546 controls"	EUR	2p16.1	2	60864815	1.15	G	6.00E-06	G	A	0.6899	0.6427	0.8849	0.5457	0.7965	0.71194	G	ANC	misc	4377
rs853308	22561518	Jin Y	Vitiligo	allergy_autoimmune_immune	"418 European ancestry cases, 2,810 European ancestry controls"	EUR	8q24.22	8	132917672	1.2	C	2.00E-08	C	T	0.9584	0.464	0.6478	0.4811	0.5276	0.61578	T	DER	misc	3228
rs877819	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	10q11.23	10	48834906	1.46	A	8.00E-09	A	G	0.4342	0.5605	0.1905	0.6342	0.5491	0.4737	G	DER	misc	5050
rs887864	22036096	Ramasamy A	Allergic rhinitis	allergy_autoimmune_immune	"3,933 European ancestry cases, 8,965 European ancestry controls"	EUR	16p13.13	16	11065028	1.16	A	1.00E-06	G	A	0.5915	0.7305	0.8046	0.6511	0.6176	0.67906	A	ANC	misc	12898
rs9270984	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	6p21.32	6	32606214	1.73	T	5.00E-24	T	G	0.1415	0.0994	0.2113	0.1372	0.2628	0.17044	G	DER	misc	5050
rs9271588	24097066	Li Y	Sjogren's syndrome	allergy_autoimmune_immune	"542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls"	EAS	6p21.32	6	32623176	1.75	T	9.00E-37	T	C	0.6596	0.4683	0.5486	0.5089	0.5542	0.54792	T	ANC	misc	1592
rs9275572	24871463	Armstrong DL	Systemic lupus erythematosus	allergy_autoimmune_immune	"725 European ancestry cases, 2,438 European ancestry controls"	EUR	6p21.32	6	32711222	1.74	A	5.00E-16	A	G	0.3986	0.3141	0.254	0.3996	0.2812	0.3295	G	DER	misc	3163
rs9275572	20596022	Petukhova L	Alopecia areata	allergy_autoimmune_immune	"Up to 1,054 European ancestry cases, 3,278 European ancestry controls"	EUR	6p21.32	6	32711222	2.21	G	1.00E-35	A	G	0.6014	0.6859	0.746	0.6004	0.7188	0.6705	G	ANC	misc	4332
rs9323624	24236485	Cornejo-Garcia JA	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	allergy_autoimmune_immune	"112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls"	MIX	14q24.3	14	76033960	2.88	T	1.00E-06	T	C	0.4153	0.5576	0.7113	0.5288	0.5818	0.55896	T	ANC	misc	457
rs9355610	21841780	Chu X	Graves' disease	allergy_autoimmune_immune	"1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls"	EAS	6q27	6	166969587	1.19	G	7.00E-10	G	A	0.5923	0.4942	0.4583	0.6292	0.3681	0.50842	G	ANC	misc	2958
rs9394159	21900946	Nakabayashi K	Graves' disease	allergy_autoimmune_immune	"1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls"	EAS	6p21.31	6	33650385	1.36	T	4.00E-12	A	T	0.4168	0.402	0.5268	0.4841	0.5521	0.47636	A	DER	misc	3837
rs9479482	20596022	Petukhova L	Alopecia areata	allergy_autoimmune_immune	"Up to 1,054 European ancestry cases, 3,278 European ancestry controls"	EUR	6q25.1	6	150036876	1.65	T	4.00E-19	T	C	0.8079	0.7147	0.7599	0.5646	0.6319	0.6958	T	ANC	misc	4332
rs956237	22291604	Okada Y	Systemic lupus erythematosus	allergy_autoimmune_immune	"891 Japanese ancestry cases, 3,384 Japanese ancestry controls"	EAS	4q25	4	108125804	1.18	A	2.00E-06	G	A	0.1906	0.438	0.3353	0.5586	0.5153	0.40756	G	DER	misc	4275
rs9833094	24236485	Cornejo-Garcia JA	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	allergy_autoimmune_immune	"112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls"	MIX	3q12.2	3	100872081	2.95	T	5.00E-07	C	T	0.3132	0.3746	0.3254	0.337	0.2372	0.31748	C	DER	misc	457
rs9865818	23817571	Bonnelykke K	Allergic sensitization	allergy_autoimmune_immune	"5,789 European ancestry cases, 10,056 European ancestry controls"	EUR	3q28	3	188354725	1.12	G	3.00E-10	A	G	0.0976	0.3573	0.2946	0.4433	0.274	0.29336	A	DER	misc	15845
rs9888739	18204446	Harley JB	Systemic lupus erythematosus	allergy_autoimmune_immune	"720 European ancestry female cases, 2,337 European ancestry female controls"	EUR	16p11.2	16	31301932	1.62	T	2.00E-23	C	T	0.6528	0.1412	0.0278	0.1421	0.2342	0.23962	T	ANC	misc	3057
rs9926296	22561518	Jin Y	Vitiligo	allergy_autoimmune_immune	"418 European ancestry cases, 2,810 European ancestry controls"	EUR	16q24.3	16	89751681	1.27	A	2.00E-13	A	G	0.3759	0.3977	0.0109	0.5467	0.3456	0.33536	A	ANC	misc	3228
rs9937837	23273568	Yang W	Systemic lupus erythematosus	allergy_autoimmune_immune	"1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls"	EAS	16p11.2	16	31287618	1.86	G	7.00E-06	T	G	0.8124	0.2118	0.0308	0.2724	0.273	0.32008	G	ANC	misc	5050
rs10010758	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	4p14	4	37936897	1.91	C	4.00E-06	T	C	0.4062	0.2709	0.2054	0.2833	0.2751	0.28818	T	DER	misc	1020
rs10043775	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	5q32	5	148425557	2.06	T	2.00E-06	T	C	0.6914	0.7349	0.752	0.7654	0.7065	0.73004	C	DER	misc	1020
rs1011108	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	2p23.3	2	26559753	1.79	T	2.00E-06	C	T	0.1339	0.4856	0.1339	0.3429	0.3016	0.27958	C	DER	misc	1020
rs10760187	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	9q33.2	9	121803541	2.07	C	5.00E-07	T	C	0.8374	0.4207	0.8125	0.4901	0.6984	0.65182	C	ANC	misc	1020
rs111571364	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	2p23.3	2	27636450	3.46	T	8.00E-06	G	T	0	0.0086	0	0.0169	0.001	0.0053	G	DER	misc	3915
rs11621969	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	14q24.3	14	75347325	2.46	T	9.00E-07	T	C	0.9834	0.7133	0.8264	0.8608	0.7495	0.82668	T	ANC	misc	1020
rs11673509	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	19p13.3	19	5080636	1.66	T	6.00E-06	C	T	0.0197	0.2118	0.247	0.0895	0.1022	0.13404	C	DER	misc	3915
rs11800854	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	1q42.2	1	233584238	12.3	G	3.00E-07	G	A	0.7496	0.9395	0.7857	0.9503	0.862	0.85742	G	ANC	misc	1020
rs12032672	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	1p22.2	1	88159953	1.99	C	1.00E-06	A	C	0.4236	0.3804	0.627	0.3091	0.3906	0.42614	A	DER	misc	1020
rs12048046	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	1q43	1	236748757	1.52	T	3.00E-06	T	C	0.8298	0.7968	0.7659	0.9165	0.8292	0.82764	T	ANC	misc	3915
rs12587630	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	14q21.1	14	37597370	2.69	A	7.00E-06	A	G	0.9977	0.879	0.8075	0.9742	0.9806	0.9278	A	ANC	misc	3915
rs13237474	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	7q33	7	135816721	3.05	T	2.00E-07	C	T	0.003	0.0173	0	0.0268	0.0041	0.01024	T	ANC	misc	3915
rs1360573	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	10p11.21	10	36596993	2.75	A	2.00E-06	A	G	0.7163	0.8501	0.8869	0.7624	0.8415	0.81144	A	ANC	misc	1020
rs1370967	24024966	Teumer A	Periodontitis (PAL4Q3)	dental	"up to 2,969 European ancestry individuals"	EUR	5q22.1	5	111203694	2.21	A	8.00E-07	G	A	0.1513	0.0865	0.1726	0.0427	0.1207	0.11476	G	DER	misc	2969
rs1537415	19897590	Schaefer AS	Periodontitis	dental	"283 European ancestry cases, 972 European ancestry controls"	EUR	9q34.3	9	135637876	1.59	G	6.00E-09	G	C	0.6868	0.67	0.7708	0.5845	0.7536	0.69314	C	DER	misc	1255
rs1616122	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	1p36.23	1	7461525	1.85	T	5.00E-06	C	T	0.5991	0.3631	0.1508	0.5229	0.2577	0.37872	C	DER	misc	1020
rs16924631	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	9p24.1	9	6486308	2.29	C	3.00E-06	G	C	0.1702	0.2118	0.248	0.168	0.1677	0.19314	G	DER	misc	1020
rs17011371	24024966	Teumer A	Periodontitis (PAL4Q3)	dental	"up to 2,969 European ancestry individuals"	EUR	3p24.3	3	22432238	2.09	A	6.00E-06	A	G	0.8563	0.9179	0.9335	0.9374	0.9836	0.92574	A	ANC	misc	2969
rs1932040	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	6p21.1	6	45729051	2.47	G	1.00E-06	A	G	0.4599	0.5893	0.3631	0.8241	0.8517	0.61762	A	DER	misc	1020
rs1953021	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	9p23	9	12914397	1.35	T	1.00E-06	G	T	0.7042	0.6326	0.6111	0.6918	0.7658	0.6811	T	ANC	misc	3915
rs1970525	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	10q23.1	10	85875167	2.89	G	4.00E-06	C	G	0.0598	0.0476	0.004	0.0596	0.0235	0.0389	C	DER	misc	1020
rs2009196	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	17q25.3	17	78874499	1.41	C	2.00E-06	C	G	0.2746	0.2161	0.4702	0.2445	0.5092	0.34292	G	DER	misc	3915
rs263063	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	19p13.3	19	5022593	1.63	T	6.00E-06	T	C	0.0197	0.1599	0.2183	0.0835	0.1084	0.11796	C	DER	misc	3915
rs264537	24024966	Teumer A	Periodontitis (PAL4Q3)	dental	"up to 2,969 European ancestry individuals"	EUR	3p12.3	3	76673615	1.35	C	3.00E-06	C	G	0.4455	0.5418	0.631	0.5954	0.454	0.53354	C	ANC	misc	2969
rs28455997	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	8p23.2	8	3219437	1.48	T	3.00E-06	T	C	0.9955	0.8228	0.9395	0.8658	0.9254	0.9098	T	ANC	misc	3915
rs28643277	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	10p13	10	15558672	1.32	A	9.00E-06	C	A	0.5537	0.3228	0.122	0.3419	0.2638	0.32084	A	ANC	misc	3915
rs2882926	24024966	Teumer A	Periodontitis (PAL4Q3)	dental	"up to 2,969 European ancestry individuals"	EUR	8q12.3	8	62709010	1.56	A	7.00E-06	A	T	0.2186	0.1009	0.2877	0.1262	0.1472	0.17612	A	ANC	misc	2969
rs294958	24024966	Teumer A	Periodontitis (PAL4Q3)	dental	"up to 2,969 European ancestry individuals"	EUR	5q33.1	5	152188538	1.29	A	5.00E-06	A	G	0.0787	0.4164	0.3929	0.4573	0.502	0.36946	G	DER	misc	2969
rs3128935	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	6p21.32	6	33004627	2.28	T	9.00E-06	T	C	0.7194	0.8818	0.8323	0.9543	0.8865	0.85486	T	ANC	misc	3915
rs346221	24024966	Teumer A	Periodontitis (PAL4Q3)	dental	"up to 2,969 European ancestry individuals"	EUR	18q12.3	18	42443341	1.31	A	4.00E-06	G	A	0.3306	0.5908	0.3065	0.6471	0.7474	0.52448	G	DER	misc	2969
rs6497031	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	15q26.1	15	93170437	1.84	A	5.00E-06	G	A	0.2663	0.2032	0.1548	0.1402	0.1534	0.18358	A	ANC	misc	3915
rs6885116	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	5q34	5	168216540	2.57	G	1.00E-06	A	G	0.2595	0.0893	0.0942	0.0964	0.1135	0.13058	G	ANC	misc	1020
rs6890783	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	5q35.1	5	172865303	6.45	A	5.00E-06	G	A	8.00E-04	0.013	0	0.0219	0.0031	0.00776	G	DER	misc	3915
rs72899866	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	2q22.1	2	140468740	1.39	A	5.00E-06	T	A	0.0522	0.1081	0.0188	0.1978	0.181	0.11158	T	DER	misc	3915
rs7819988	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	8q24.12	8	121198650	1.32	T	3.00E-06	T	C	0.5265	0.4553	0.3978	0.5547	0.318	0.45046	T	ANC	misc	3915
rs78797168	24024966	Teumer A	Periodontitis (CDC/AAP)	dental	"up to 3,915 European ancestry individuals"	EUR	6q25.3	6	160038159	1.75	A	2.00E-06	A	G	0.9955	0.9712	0.8204	0.9235	0.9029	0.9227	A	ANC	misc	3915
rs9287989	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	2q31.1	2	175853013	1.8	C	4.00E-06	T	C	0.4894	0.3963	0.5923	0.5179	0.6207	0.52332	C	ANC	misc	1020
rs9942773	22699663	Divaris K	Periodontal microbiota	dental	"1,020 European ancestry individuals"	EUR	8q23.3	8	114108798	2.07	A	2.00E-06	A	C	0.6793	0.8458	0.9653	0.7455	0.8742	0.82202	C	DER	misc	1020
rs10033900	22705344	Sobrin L	Age-related macular degeneration (CNV)	miscellaneous_diseases	"1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls"	EUR	4q25	4	109737911	1.31	T	6.00E-09	T	C	0.3404	0.4683	0.6121	0.4632	0.6871	0.51422	T	ANC	misc	5909
rs10033900	22705344	Sobrin L	Age-related macular degeneration (GA)	miscellaneous_diseases	"819 European ancestry geographic atrophy cases, 4,134 European ancestry controls"	EUR	4q25	4	109737911	1.32	T	4.00E-06	T	C	0.3404	0.4683	0.6121	0.4632	0.6871	0.51422	T	ANC	misc	4953
rs10033900	21665990	Yu Y	Age-related macular degeneration	miscellaneous_diseases	"2,594 European ancestry cases, 4,134 European ancestry controls"	EUR	4q25	4	109737911	1.18	T	4.00E-10	T	C	0.3404	0.4683	0.6121	0.4632	0.6871	0.51422	T	ANC	misc	6728
rs10065203	23776197	Leandro-Garcia LJ	Paclitaxel-induced neuropathy	miscellaneous_diseases	143 European ancestry individuals	EUR	5p15.2	5	14393512	2.51	T	4.00E-06	C	T	0.0408	0.1729	0.255	0.326	0.1421	0.18736	C	DER	misc	143
rs10090117	23776197	Leandro-Garcia LJ	Paclitaxel-induced neuropathy	miscellaneous_diseases	143 European ancestry individuals	EUR	8p22	8	18523725	2.38	C	4.00E-06	T	C	0.2315	0.1297	0.1042	0.2018	0.2485	0.18314	T	DER	misc	143
rs1012307	24824216	Myers RA	Asthma (sex interaction)	miscellaneous_diseases	"1,052 European ancestry male cases, 1,019 European ancestry female cases, 709 European ancestry male controls, 826 European ancestry female controls, 675 African American/African Caribbean male cases, 837 African American/African Caribbean female cases, 577 African American/African Caribbean male controls, 926 African American/African Caribbean female controls, 926 Latino male cases, 710 Latino female cases, 410 Latino male controls, 382 Latino female controls"	MIX	2q23.3	2	149798707	1.44	C	8.00E-07	A	C	0.1884	0.0173	0	0.001	0	0.04134	C	ANC	misc	9049
rs10162002	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	13q12.12	13	23468371	1.233	A	5.00E-06	G	A	0.3328	0.121	0.0962	0.1302	0.0481	0.14566	A	ANC	misc	39282
rs10162694	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	15q14	15	35054340	1.55	A	9.00E-06	C	A	0.0719	0.134	0.1012	0	0.001	0.06162	C	DER	misc	1726
rs10199521	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	2p25.3	2	2515741	1.46	T	3.00E-06	C	T	0.2769	0.1801	0.3571	0.1968	0.2669	0.25556	C	DER	misc	2829
rs10214930	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	7p15.2	7	27745330	1.33	G	8.00E-12	G	A	0.8646	0.6902	0.8075	0.7793	0.8262	0.79356	G	ANC	misc	6492
rs10248351	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	7q21.13	7	88852128	1.843	C	7.00E-06	T	C	0.1694	0.0159	0.0238	0.006	0.0215	0.04732	C	ANC	misc	39282
rs10403021	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	19q12	19	29588697	1.01	C	2.00E-06	C	T	0.5877	0.7939	0.7103	0.6362	0.6616	0.67794	C	ANC	misc	2829
rs10406174	23326517	Holliday EG	Age-related macular degeneration	miscellaneous_diseases	"3,772 European ancestry cases, 16,033 European ancestry controls"	EUR	19p13.3	19	3944242	1.24	A	6.00E-06	G	A	0.2617	0.0807	0.0506	0.1143	0.2996	0.16138	G	DER	misc	19805
rs10414149	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	19q13.41	19	51624491	1.2048193	A	3.00E-09	A	G	0.5204	0.7061	0.879	0.7734	0.8057	0.73692	A	ANC	misc	8060
rs10483727	22419738	Osman W	Glaucoma (primary open-angle)	miscellaneous_diseases	"1,394 Japanese ancestry cases, 6,599 Japanese ancestry controls"	EAS	14q23.1	14	60606157	1.27	T	9.00E-08	T	C	0.966	0.3415	0.7867	0.4036	0.5767	0.6149	T	ANC	misc	7993
rs10490775	20825314	Baratz KH	Fuchs's corneal dystrophy	miscellaneous_diseases	"130 European ancestry cases, 260 European ancestry controls"	EUR	3p14.2	3	62051050	2.3	T	1.00E-06	C	T	0.1301	0.0893	0.0774	0.1054	0.2362	0.12768	C	DER	misc	390
rs10490924	22705344	Sobrin L	Age-related macular degeneration (CNV)	miscellaneous_diseases	"1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls"	EUR	10q26.13	10	122454932	3.67	T	2.00E-138	G	T	0.2458	0.2478	0.4038	0.1948	0.3425	0.28694	G	DER	misc	5909
rs10490924	22705344	Sobrin L	Age-related macular degeneration (CNV vs. GA)	miscellaneous_diseases	"1,775 European ancestry choroidal neovascularization cases, 819 European ancestry geographic atrophy cases,"	EUR	10q26.13	10	122454932	1.38	T	7.00E-14	G	T	0.2458	0.2478	0.4038	0.1948	0.3425	0.28694	G	DER	misc	2594
rs10490924	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	10q26.13	10	122454932	2.76	T	0	G	T	0.2458	0.2478	0.4038	0.1948	0.3425	0.28694	G	DER	misc	59494
rs10490924	22705344	Sobrin L	Age-related macular degeneration (GA)	miscellaneous_diseases	"819 European ancestry geographic atrophy cases, 4,134 European ancestry controls"	EUR	10q26.13	10	122454932	2.52	T	7.00E-47	G	T	0.2458	0.2478	0.4038	0.1948	0.3425	0.28694	G	DER	misc	4953
rs10496034	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	2p16.1	2	54917798	1.216	C	2.00E-06	G	C	0.0242	0.2003	0.1944	0.0666	0.2219	0.14148	C	ANC	misc	48020
rs10508372	21804548	Hirota T	Asthma	miscellaneous_diseases	"1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls"	EAS	10p14	10	8930055	1.16	G	2.00E-15	G	A	0.789	0.7205	0.3542	0.9354	0.7035	0.70052	A	DER	misc	4836
rs10512385	23776197	Leandro-Garcia LJ	Paclitaxel-induced neuropathy	miscellaneous_diseases	143 European ancestry individuals	EUR	9q31.3	9	108693295	2.58	G	6.00E-06	A	G	0.2511	0.0778	0.0565	0.1143	0.1881	0.13756	A	DER	misc	143
rs1051920	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	8q21.13	8	80526185	1.143	T	4.00E-06	C	T	0.8033	0.2579	0.2778	0.2753	0.2996	0.38278	T	ANC	misc	39282
rs10519980	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	4q31.23	4	148713873	1.16	C	7.00E-06	C	T	0.6672	0.8674	0.9216	0.8062	0.8517	0.82282	C	ANC	misc	39282
rs1061147	23326517	Holliday EG	Age-related macular degeneration	miscellaneous_diseases	"3,772 European ancestry cases, 16,033 European ancestry controls"	EUR	1q31.3	1	196685194	1.4	A	7.00E-32	A	C	0.4312	0.2435	0.0496	0.3618	0.2904	0.2753	A	ANC	misc	19805
rs1061170	21665990	Yu Y	Age-related macular degeneration	miscellaneous_diseases	"2,594 European ancestry cases, 4,134 European ancestry controls"	EUR	1q31.3	1	196690107	2.41	C	1.00E-261	C	T	0.3623	0.2334	0.0486	0.3618	0.2873	0.25868	T	DER	misc	6728
rs1063192	22419738	Osman W	Glaucoma (primary open-angle)	miscellaneous_diseases	"1,394 Japanese ancestry cases, 6,599 Japanese ancestry controls"	EAS	9p21.3	9	22003368	1.33	A	5.00E-11	G	A	0.9856	0.804	0.8323	0.5656	0.727	0.7829	A	ANC	misc	7993
rs1073203	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	5q23.2	5	125983763	1.54	G	9.00E-06	C	G	0.2277	0.121	0	0.1372	0.0389	0.10496	C	DER	misc	2829
rs10737680	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	1q31.3	1	196710325	2.43	A	0	A	C	0.525	0.4611	0.5754	0.5765	0.4417	0.51594	A	ANC	misc	59494
rs1075309	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	2p25.2	2	5113465	2.8571	T	7.00E-07	C	T	0.0408	0.1484	0.0109	0.2922	0.229	0.14426	C	DER	misc	733
rs10762058	19187332	Kim SH	Asthma (toluene diisocyanate-induced)	miscellaneous_diseases	"84 Korean ancestry cases, 263 Korean ancestry controls"	EAS	10q21.3	10	66328750	5	G	6.00E-06	C	G	0.7625	0.781	0.7768	0.8062	0.7965	0.7846	G	ANC	misc	347
rs10762738	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	10q22.3	10	76935709	1.24	G	2.00E-10	A	G	0.1513	0.2651	0.0486	0.493	0.2444	0.24048	A	DER	misc	6492
rs10801555	22694956	Cipriani V	Age-related macular degeneration	miscellaneous_diseases	"893 European ancestry cases, 2,199 European ancestry controls"	EUR	1q31.3	1	196691131	2.33	A	2.00E-47	A	G	0.3646	0.2334	0.0486	0.3618	0.2883	0.25934	A	ANC	misc	3092
rs10817758	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	9q33.1	9	115381654	1.13	T	1.00E-08	C	T	0.0794	0.1369	0.4425	0.1272	0.1401	0.18522	C	DER	misc	8060
rs10818854	21151128	Chen ZJ	Polycystic ovary syndrome	miscellaneous_diseases	"744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls"	EAS	9q33.3	9	123684499	1.51	A	9.00E-18	G	A	0.0787	0.072	0.0516	0.0467	0.0767	0.06514	G	DER	misc	1639
rs10830228	23326517	Holliday EG	Age-related macular degeneration	miscellaneous_diseases	"3,772 European ancestry cases, 16,033 European ancestry controls"	EUR	11q14.3	11	89157946	1.12	A	9.00E-06	A	G	0.6573	0.451	0.3254	0.4185	0.32	0.43444	A	ANC	misc	19805
rs10836945	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	11p12	11	38263951	2.1739	C	8.00E-06	T	C	0.3079	0.8963	0.7937	0.9533	0.772	0.74464	T	DER	misc	1726
rs10900585	22895189	Timmann C	Malaria	miscellaneous_diseases	"1,325 African ancestry, 828 African ancestry controls"	AFR	1q32.1	1	203684896	1.64	T	2.00E-10	G	T	0.5825	0.9294	0.9752	0.8956	0.8661	0.84976	G	DER	misc	2153
rs10910200	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	1q42.2	1	233508110	1.35	G	6.00E-06	G	C	0.3056	0.1599	0.369	0.2376	0.2781	0.27004	C	DER	misc	2829
rs10927101	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	1q44	1	244010570	1.33	A	2.00E-06	C	A	0.5514	0.4697	0.6895	0.4155	0.3937	0.50396	A	ANC	misc	2829
rs10961534	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	9p22.3	9	14470835	1.193	G	7.00E-06	A	G	0.2118	0.1354	0.3085	0.1044	0.0838	0.16878	G	ANC	misc	39282
rs10979	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	6q24.2	6	143568902	1.1943	A	1.00E-06	G	A	0.6059	0.4741	0.3869	0.6392	0.5583	0.53288	A	ANC	misc	6492
rs10995251	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	10q21.2	10	62638706	1.28	C	6.00E-20	C	T	0.9145	0.7997	0.4018	0.6421	0.6431	0.68024	C	ANC	misc	9443
rs11071559	20860503	Moffatt MF	Asthma	miscellaneous_diseases	"10,365 cases, 16,110 controls"	EUR	15q22.2	15	60777789	1.18	C	1.00E-07	C	T	0.5038	0.8213	0.8135	0.8658	0.7556	0.752	C	ANC	misc	26475
rs11086243	21441931	Okamoto K	Nephrotic syndrome (acquired)	miscellaneous_diseases	"195 Japanese ancestry cases, 1,546 Japanese ancestry controls"	EAS	20q13.13	20	48150492	1.37	T	3.00E-06	C	T	0.3124	0.4352	0.2113	0.505	0.3834	0.36946	T	ANC	misc	1741
rs11105468	25344690	Feenstra B	Febrile seizures	miscellaneous_diseases	"929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls"	EUR	12q21.33	12	89935056	1.25	A	3.00E-11	T	A	0.2398	0.1614	0.128	0.2624	0.1053	0.17938	T	DER	misc	6117
rs11105468	25344690	Feenstra B	Febrile seizures (MMR vaccine-unrelated)	miscellaneous_diseases	"1,070 European ancestry cases, 4,118 European ancestry controls"	EUR	12q21.33	12	89935056	1.23	A	2.00E-07	T	A	0.2398	0.1614	0.128	0.2624	0.1053	0.17938	T	DER	misc	5188
rs11105468	25344690	Feenstra B	Febrile seizures (MMR vaccine-related)	miscellaneous_diseases	"929 European ancestry cases, 4,118 European ancestry controls"	EUR	12q21.33	12	89935056	1.28	A	7.00E-08	T	A	0.2398	0.1614	0.128	0.2624	0.1053	0.17938	T	DER	misc	5047
rs11150612	25305756	Kiryluk K	IgA nephropathy	miscellaneous_diseases	"1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls"	EAS	16p11.2	16	31346439	1.18	A	1.00E-11	G	A	0.056	0.317	0.6518	0.339	0.1176	0.29628	G	DER	misc	6699
rs11174812	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	12q12	12	40031285	1.14	T	2.00E-07	C	T	0.4455	0.2622	0.2183	0.3231	0.3088	0.31158	C	DER	misc	8060
rs11191865	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	10q24.33	10	103913084	1.25	A	2.00E-08	G	A	0.2852	0.4769	0.3413	0.5378	0.4049	0.40922	G	DER	misc	5844
rs11236809	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	11q13.5	11	76621166	1.24	G	3.00E-06	T	G	0.0083	0.2536	0.2431	0.0944	0.2076	0.1614	T	DER	misc	9443
rs1126214	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	18q12.1	18	31059582	1.25	C	7.00E-06	T	C	0.2655	0.3934	0.7113	0.332	0.3252	0.40548	T	DER	misc	1726
rs114444506	25344690	Feenstra B	Febrile seizures	miscellaneous_diseases	"929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls"	EUR	11p14.2	11	26325284	2.09	C	4.00E-20	T	C	8.00E-04	0.013	0	0.0258	0.0164	0.0112	T	DER	misc	6117
rs114444506	25344690	Feenstra B	Febrile seizures (MMR vaccine-unrelated)	miscellaneous_diseases	"1,070 European ancestry cases, 4,118 European ancestry controls"	EUR	11p14.2	11	26325284	2.03	C	5.00E-14	T	C	8.00E-04	0.013	0	0.0258	0.0164	0.0112	T	DER	misc	5188
rs114444506	25344690	Feenstra B	Febrile seizures (MMR vaccine-related)	miscellaneous_diseases	"929 European ancestry cases, 4,118 European ancestry controls"	EUR	11p14.2	11	26325284	2.11	C	2.00E-12	T	C	8.00E-04	0.013	0	0.0258	0.0164	0.0112	T	DER	misc	5047
rs114931935	25241909	Lee JH	Chronic bronchitis in chronic obstructive pulmonary disease	miscellaneous_diseases	"1,662 European ancestry cases, 3,777 European ancestry controls"	EUR	1q23.3	1	161690011	1.88	A	5.00E-07	G	A	0.0015	0.0303	0	0.0408	0.0051	0.01554	G	DER	misc	5439
rs11574637	25305756	Kiryluk K	IgA nephropathy	miscellaneous_diseases	"1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls"	EAS	16p11.2	16	31357553	1.32	T	8.00E-13	T	C	0.6899	0.8473	0.9851	0.8002	0.7209	0.80868	T	ANC	misc	6699
rs1159268	24927181	Navarini AA	Acne (severe)	miscellaneous_diseases	"1,893 European ancestry cases, 5,132 European ancestry controls"	EUR	1q41	1	218671564	1.17	A	4.00E-08	G	A	0.329	0.2882	0.4831	0.3091	0.2802	0.33792	A	ANC	misc	7025
rs1160351	22445761	Kurose K	Sexual dysfunction (SSRI/SNRI-related)	miscellaneous_diseases	201 Japanese ancestry individuals	EAS	14q21.3	14	47546779	2.92	A	3.00E-07	A	C	0.8691	0.6974	0.4077	0.5964	0.7229	0.6587	A	ANC	misc	201
rs1165472	23776197	Leandro-Garcia LJ	Paclitaxel-induced neuropathy	miscellaneous_diseases	143 European ancestry individuals	EUR	1p32.2	1	55642931	2.36	G	4.00E-06	A	G	0.3139	0.1758	0.1052	0.2535	0.3415	0.23798	A	DER	misc	143
rs11672517	21732829	Dolmans GH	Dupuytren's disease	miscellaneous_diseases	"856 European ancestry cases, 2,836 European ancestry controls"	EUR	19q13.43	19	57166826	1.34	A	7.00E-14	G	A	0.2398	0.3098	0.2946	0.2555	0.316	0.28314	G	DER	misc	3692
rs11749327	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	5p15.33	5	457146	1.25	C	9.00E-09	C	A	0.9924	0.7882	0.996	0.6988	0.8732	0.86972	C	ANC	misc	6492
rs11755724	20385826	Neale BM	Age-related macular degeneration	miscellaneous_diseases	"979 cases, 1,709 controls"	EUR	6p24.3	6	7118757	1.15	G	1.00E-06	A	G	0.1702	0.4928	0.006	0.6332	0.2515	0.31074	A	DER	misc	2688
rs117633859	25108386	Hou S	Vogt-Koyanagi-Harada syndrome	miscellaneous_diseases	"774 Han Chinese ancestry cases, 2,009 Han Chinese ancestry controls"	EAS	1p31.3	1	67162145	1.82	G	3.00E-21	A	G	0.0038	0.0663	0.0933	0.0249	0.0348	0.04462	A	DER	misc	2783
rs11765845	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	7p15.1	7	28351523	1.02	A	7.00E-06	A	G	0.5424	0.255	0.3333	0.3062	0.2352	0.33442	A	ANC	misc	2829
rs11766496	22837378	Wilk JB	Airflow obstruction	miscellaneous_diseases	"up to 3,368 European ancestry cases, up to 29,507 European ancestry controls"	EUR	7q11.22	7	71923865	1.3	C	2.00E-06	G	C	0.3162	0.0951	0.0317	0.1243	0.2597	0.1654	G	DER	misc	32875
rs11867934	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	17p11.2	17	17030090	1.43	C	7.00E-06	T	C	0.7829	0.8156	0.8869	0.8082	0.7894	0.8166	C	ANC	misc	2829
rs11887534	17632509	Buch S	Gallstones	miscellaneous_diseases	"280 European ancestry cases, 360 European ancestry controls"	EUR	2p21	2	43839108	2.2	C	1.00E-14	G	C	0.0764	0.0965	0.0139	0.0795	0.0419	0.06164	G	DER	misc	640
rs11969985	25173105	Gharahkhani P	Glaucoma (primary open-angle)	miscellaneous_diseases	"1,155 European ancestry cases, 1,922 European ancestry controls"	EUR	6p25.3	6	1922673	1.31	G	8.00E-10	G	A	0.7405	0.8329	0.8224	0.8509	0.8589	0.82112	G	ANC	misc	3077
rs11986011	23326517	Holliday EG	Age-related macular degeneration	miscellaneous_diseases	"3,772 European ancestry cases, 16,033 European ancestry controls"	EUR	8q24.21	8	126320412	2.5	T	5.00E-06	C	T	0.062	0.0043	0	0	0	0.01326	C	DER	misc	19805
rs12032381	20971583	Ojwang JO	Dupuytren's disease	miscellaneous_diseases	"37 European ancestry cases, 36 European ancestry controls"	EUR	1q41	1	221443734	6.22	C	6.00E-06	A	C	0.0219	0.2334	0.3522	0.2485	0.2403	0.21926	A	DER	misc	73
rs12153855	22694956	Cipriani V	Age-related macular degeneration	miscellaneous_diseases	"893 European ancestry cases, 2,199 European ancestry controls"	EUR	"6p21.32, 6p21.33"	6	32107027	1.44	C	1.00E-09	T	C	0.171	0.0778	0.0367	0.1243	0.1902	0.12	T	DER	misc	3092
rs12212674	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	6p22.3	6	22086845	1.086	A	1.00E-06	T	A	0.3517	0.3545	0.1429	0.5606	0.4049	0.36292	T	DER	misc	48020
rs12283022	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	11q22.3	11	103109865	7.1429	G	2.00E-06	A	G	0.1384	0.0173	0	0	0	0.03114	A	DER	misc	733
rs12294076	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	11q22.3	11	103256336	6.25	T	1.00E-07	T	C	0.7269	0.9769	1	1	1	0.94076	T	ANC	misc	733
rs12478601	21151128	Chen ZJ	Polycystic ovary syndrome	miscellaneous_diseases	"744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls"	EAS	2p21	2	43494369	1.39	C	3.00E-23	C	T	0.1808	0.6023	0.7063	0.4135	0.3395	0.44848	T	DER	misc	1639
rs12510916	25101718	Lee JH	Chronic obstructive pulmonary disease	miscellaneous_diseases	"3,281 European ancestry cases, 494 African American cases, 2,712 European ancestry smoker controls, 1,749 African American smoker controls"	MIX	4q31.21	4	144451096	1.27	C	1.00E-07	C	T	0.9743	0.7133	0.6835	0.6779	0.5102	0.71184	C	ANC	misc	8236
rs1258763	20023658	Mangold E	Orofacial clefts	miscellaneous_diseases	"399 European ancestry cases, 1,318 European ancestry controls"	EUR	15q13.3	15	32758222	1.52	T	1.00E-06	C	T	0.4871	0.6888	0.0694	0.6421	0.4744	0.47236	C	DER	misc	1717
rs12610495	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	19p13.3	19	4717660	1.29	G	2.00E-12	A	G	0.1278	0.2032	0.1429	0.2942	0.1718	0.18798	A	DER	misc	5844
rs12634229	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	3q13.2	3	112657461	1.29	C	2.00E-19	T	C	0.3011	0.1254	0.3294	0.0577	0.0511	0.17294	T	DER	misc	9443
rs12638075	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	3q23	3	140703546	1.376	C	5.00E-06	T	C	0.0219	0.0187	0.1111	0.0219	0.0031	0.03534	T	DER	misc	48020
rs1265159	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.33	6	31172270	2.42	A	4.00E-37	G	A	0.2451	0.1311	0.0367	0.1918	0.1442	0.14978	G	DER	misc	2894
rs12692398	25241909	Lee JH	Chronic bronchitis and chronic obstructive pulmonary disease	miscellaneous_diseases	"up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls"	EUR	2p25.1	2	10060189	1.44	A	3.00E-08	G	A	0.0303	0.1484	0.253	0.1899	0.3262	0.18956	G	DER	misc	7113
rs12699683	23776197	Leandro-Garcia LJ	Paclitaxel-induced neuropathy	miscellaneous_diseases	143 European ancestry individuals	EUR	7p21.2	7	15093502	3.66	T	7.00E-06	G	T	0.0582	0.1268	0.1994	0.0905	0.0348	0.10194	T	ANC	misc	143
rs12701220	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	7p22.3	7	983092	1.5385	C	3.00E-06	T	C	0.0651	0.245	0.3026	0.2207	0.1309	0.19286	T	DER	misc	1726
rs1278769	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	13q34	13	112882313	1.27	G	7.00E-09	A	G	0.7973	0.8098	0.7292	0.7634	0.7352	0.76698	G	ANC	misc	5844
rs12910412	25241909	Lee JH	Chronic bronchitis and chronic obstructive pulmonary disease	miscellaneous_diseases	"up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls"	EUR	15q26.2	15	94163844	1.3	G	5.00E-07	T	G	0.1914	0.3458	0.1548	0.4573	0.3405	0.29796	T	DER	misc	7113
rs12914385	25241909	Lee JH	Chronic bronchitis and chronic obstructive pulmonary disease	miscellaneous_diseases	"up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls"	EUR	15q25.1	15	78606381	1.27	T	3.00E-06	C	T	0.1649	0.2334	0.2887	0.4046	0.1984	0.258	C	DER	misc	7113
rs12914385	24621683	Cho MH	Chronic obstructive pulmonary disease (moderate to severe)	miscellaneous_diseases	"5,812 European ancestry cases, 3,955 European ancestry controls, 821 African American cases, 1,749 African American controls"	EUR	15q25.1	15	78606381	1.28	T	6.00E-14	C	T	0.1649	0.2334	0.2887	0.4046	0.1984	0.258	C	DER	misc	12337
rs12914385	24621683	Cho MH	Chronic obstructive pulmonary disease (severe)	miscellaneous_diseases	"3,145 European ancestry cases, 3,955 European ancestry controls, 352 African American cases, 1,749 African American controls"	EUR	15q25.1	15	78606381	1.39	T	3.00E-16	C	T	0.1649	0.2334	0.2887	0.4046	0.1984	0.258	C	DER	misc	9201
rs1295686	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	5q31.1	5	132660151	1.22	T	2.00E-06	T	C	0.7148	0.4438	0.3562	0.2137	0.2924	0.40418	T	ANC	misc	9443
rs1295686	20860503	Moffatt MF	Asthma	miscellaneous_diseases	"10,365 cases, 16,110 controls"	EUR	5q31.1	5	132660151	1.15	T	1.00E-07	T	C	0.7148	0.4438	0.3562	0.2137	0.2924	0.40418	T	ANC	misc	26475
rs12960119	23585552	Kirin M	Rhegmatogenous retinal detachment	miscellaneous_diseases	"867 European ancestry cases, 1,953 European ancestry controls"	EUR	18q11.2	18	26034739	1.26	G	2.00E-06	A	G	0.6861	0.281	0.2817	0.0974	0.1176	0.29276	G	ANC	misc	2820
rs13004083	25344690	Feenstra B	Febrile seizures (MMR vaccine-related)	miscellaneous_diseases	"929 European ancestry cases, 4,118 European ancestry controls"	EUR	2q24.3	2	166088857	1.47	A	3.00E-12	A	G	0.8563	0.8084	0.8998	0.7356	0.8067	0.82136	G	DER	misc	5047
rs13015714	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	2q12.1	2	102355405	1.27	G	8.00E-18	G	T	0.1082	0.4726	0.4107	0.2187	0.4458	0.3312	T	DER	misc	9443
rs13064954	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	3q25.31	3	157136953	1.02	G	7.00E-07	G	A	0.8669	0.9107	0.9127	0.9493	0.9121	0.91034	C	DER	misc	2829
rs13081855	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	3q12.1	3	99762695	1.23	T	4.00E-13	G	T	0.034	0.0548	0.0486	0.0964	0.1002	0.0668	G	DER	misc	59494
rs13095226	20385826	Neale BM	Age-related macular degeneration	miscellaneous_diseases	"979 cases, 1,709 controls"	EUR	3q12.1	3	99677428	1.24	C	3.00E-06	T	C	0.0363	0.0821	0.0685	0.1103	0.091	0.07764	T	DER	misc	2688
rs13105210	25101718	Lee JH	Chronic obstructive pulmonary disease	miscellaneous_diseases	"3,281 European ancestry cases, 494 African American cases, 2,712 European ancestry smoker controls, 1,749 African American smoker controls"	EUR	4q31.21	4	144341775	1.27	C	9.00E-08	C	T	0.9743	0.7161	0.7619	0.6809	0.5112	0.72888	C	ANC	misc	8236
rs13124827	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	4q32.1	4	156419058	1.23	C	1.00E-09	C	T	0.8903	0.7622	0.9196	0.4652	0.6401	0.73548	C	ANC	misc	6492
rs13141641	25241909	Lee JH	Chronic bronchitis and chronic obstructive pulmonary disease	miscellaneous_diseases	"up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls"	EUR	4q31.21	4	144585304	1.27	T	3.00E-06	T	C	0.9508	0.7118	0.6736	0.5746	0.547	0.69156	T	ANC	misc	7113
rs13141641	24621683	Cho MH	Chronic obstructive pulmonary disease (moderate to severe)	miscellaneous_diseases	"5,812 European ancestry cases, 3,955 European ancestry controls, 821 African American cases, 1,749 African American controls"	EUR	4q31.21	4	144585304	1.27	T	2.00E-12	T	C	0.9508	0.7118	0.6736	0.5746	0.547	0.69156	T	ANC	misc	12337
rs13141641	24621683	Cho MH	Chronic obstructive pulmonary disease (severe)	miscellaneous_diseases	"3,145 European ancestry cases, 3,955 European ancestry controls, 352 African American cases, 1,749 African American controls"	EUR	4q31.21	4	144585304	1.39	T	4.00E-15	T	C	0.9508	0.7118	0.6736	0.5746	0.547	0.69156	T	ANC	misc	9201
rs1318653	25344690	Feenstra B	Febrile seizures	miscellaneous_diseases	"929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls"	EUR	1q32.2	1	207841577	1.48	T	2.00E-09	T	C	0.8064	0.7233	0.9921	0.7992	0.8609	0.83638	T	ANC	misc	6117
rs1318653	25344690	Feenstra B	Febrile seizures (MMR vaccine-related)	miscellaneous_diseases	"929 European ancestry cases, 4,118 European ancestry controls"	EUR	1q32.2	1	207841577	1.43	T	1.00E-10	T	C	0.8064	0.7233	0.9921	0.7992	0.8609	0.83638	T	ANC	misc	5047
rs13220141	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	6q24.3	6	146576497	1.27	A	1.00E-22	A	T	0.8759	0.9366	0.7302	0.9284	0.8425	0.86272	A	ANC	misc	8060
rs13257518	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	8p12	8	32778056	1.37	A	2.00E-06	T	A	0.0061	0.1138	0	0.1918	0.0583	0.074	T	DER	misc	48020
rs13278062	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	8p21.3	8	23225458	1.15	T	3.00E-15	G	T	0.1346	0.549	0.3413	0.503	0.6115	0.42788	G	DER	misc	59494
rs1329424	23326517	Holliday EG	Age-related macular degeneration	miscellaneous_diseases	"3,772 European ancestry cases, 16,033 European ancestry controls"	EUR	1q31.3	1	196677046	1.41	T	2.00E-31	T	G	0.2927	0.232	0.0486	0.3618	0.2863	0.24428	G	DER	misc	19805
rs13382811	23933737	Khor CC	Myopia (severe)	miscellaneous_diseases	"1,603 East Asian ancestry cases, 3,427 East Asian ancestry controls"	EAS	2q22.3	2	144466053	1.26	T	6.00E-10	C	T	0.3056	0.3228	0.249	0.1421	0.1247	0.22884	T	ANC	misc	5030
rs13405728	21151128	Chen ZJ	Polycystic ovary syndrome	miscellaneous_diseases	"744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls"	EAS	2p16.3	2	48751020	1.41	A	8.00E-21	A	G	0.6815	0.8112	0.7272	0.9294	0.8292	0.7957	A	ANC	misc	1639
rs13408661	23028483	Ramasamy A	Asthma	miscellaneous_diseases	"1,716 European ancestry cases, 16,888 European ancestry controls"	EUR	2q12.1	2	102338622	1.23	G	1.00E-09	G	A	0.7027	0.879	0.9048	0.8509	0.9202	0.85152	G	ANC	misc	18604
rs1342038	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	1q25.1	1	173332377	1.49	G	4.00E-06	G	A	0.5212	0.5317	0.4325	0.6064	0.5215	0.52266	A	DER	misc	2829
rs1342326	20860503	Moffatt MF	Asthma	miscellaneous_diseases	"10,365 cases, 16,110 controls"	EUR	9p24.1	9	6190076	1.2	C	9.00E-10	A	C	0.3464	0.1398	0.002	0.165	0.1391	0.15846	A	DER	misc	26475
rs13429458	21151128	Chen ZJ	Polycystic ovary syndrome	miscellaneous_diseases	"744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls"	EAS	2p21	2	43411699	1.49	A	2.00E-23	A	C	0.8011	0.9063	0.8006	0.8668	0.8057	0.8361	A	ANC	misc	1639
rs13436218	22445761	Kurose K	Sexual dysfunction (SSRI/SNRI-related)	miscellaneous_diseases	201 Japanese ancestry individuals	EUR	5q23.3	5	129664693	5.92	G	1.00E-06	T	G	0.1415	0.0764	0.0208	0.0805	0.1094	0.08572	G	ANC	misc	201
rs1355023	23326517	Holliday EG	Age-related macular degeneration	miscellaneous_diseases	"3,772 European ancestry cases, 16,033 European ancestry controls"	EUR	6q21	6	105805124	1.13	T	6.00E-06	T	C	0.4523	0.7666	0.5903	0.6859	0.6186	0.62274	T	ANC	misc	19805
rs1366200	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	5q23.1	5	115986122	1.308	G	1.00E-06	T	G	0.5492	0.5043	0.9087	0.2843	0.5849	0.56628	G	ANC	misc	48020
rs1379326	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	8p23.2	8	4760288	1.78	C	1.00E-07	T	C	0.4017	0.2983	0.3462	0.3062	0.2587	0.32222	T	DER	misc	5844
rs138641402	25241909	Lee JH	Chronic obstructive pulmonary disease	miscellaneous_diseases	"3,777 European ancestry cases, 3,520 European ancestry smoker controls"	EUR	4q31.21	4	144524627	1.3	A	4.00E-09	A	T	0.9728	0.6859	0.6845	0.5805	0.5573	0.6962	A	ANC	misc	7297
rs139257032	25241909	Lee JH	Chronic bronchitis and chronic obstructive pulmonary disease	miscellaneous_diseases	"up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls"	EUR	2q14.2	2	119571288	3.35	T	3.00E-07	C	T	0	0.0043	0	0.0149	0.001	0.00404	C	DER	misc	7113
rs1401327	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	2p16.3	2	49820345	1.157	A	4.00E-08	G	A	0.062	0.0965	0	0.1551	0.0593	0.07458	A	ANC	misc	48020
rs143136847	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	12q21.31	12	82354560	2.6	G	6.00E-08	T	G	0	0.0043	0	0.005	0.001	0.00206	T	DER	misc	6492
rs1440306	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	4q26	4	116954105	1.3699	T	1.00E-06	T	G	0.8139	0.7579	0.7232	0.7922	0.7536	0.76816	T	ANC	misc	1726
rs1444418	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	10q21.3	10	62800710	1.17	A	2.00E-07	A	G	0.5953	0.6037	0.6706	0.8628	0.8446	0.7154	G	DER	misc	9443
rs146692665	24927181	Navarini AA	Acne (severe)	miscellaneous_diseases	"1,893 European ancestry cases, 5,132 European ancestry controls"	EUR	3p21.31	3	45343191	2.17	T	3.00E-06	G	T	0	0.0043	0	0.005	0	0.00186	G	DER	misc	7025
rs1474256	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	15q25.1	15	79171505	1.2048	C	6.00E-06	C	T	0.7171	0.4755	0.5089	0.5964	0.8149	0.62256	C	ANC	misc	1726
rs1480380	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.32	6	32945469	3.05	T	4.00E-39	C	T	0.2065	0.0576	0.0099	0.0775	0.0133	0.07296	T	ANC	misc	2894
rs149709	24927181	Navarini AA	Acne (severe)	miscellaneous_diseases	"1,893 European ancestry cases, 5,132 European ancestry controls"	EUR	6p21.2	6	37311157	1.19	C	2.00E-06	T	C	0.143	0.2104	0.0556	0.2266	0.135	0.15412	T	DER	misc	7025
rs151326733	25027321	Hoffmann TJ	Glaucoma	miscellaneous_diseases	"658 African American prevalent cases, 1,062 African American incident cases, 6,067 African American controls, 153 Hispanic prevalent cases, 336 Hispanic incident cases, 2,685 Hispanic controls"	MIX	12p12.3	12	16036544	2.2	C	2.00E-08	G	C	0.0416	0	0	0	0	0.00832	G	DER	misc	10961
rs1541364	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	5q31.2	5	137567007	1.24	G	9.00E-06	G	A	0.6929	0.366	0.4504	0.4563	0.5603	0.50518	G	ANC	misc	1726
rs1588265	19426955	Himes BE	Asthma	miscellaneous_diseases	"359 European ancestry cases, 846 European ancestry controls"	EUR	5q12.1	5	60073967	1.18	G	3.00E-08	A	G	0.2126	0.3084	0.753	0.2773	0.3323	0.37672	A	DER	misc	1205
rs160441	20694014	Thye T	Tuberculosis	miscellaneous_diseases	"2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls"	AFR	8q21.3	8	89644760	1.2	T	8.00E-06	T	C	0.5734	0.4035	0.248	0.4135	0.3599	0.39966	C	DER	misc	5359
rs160451	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	8q21.3	8	89650713	1.2820514	C	1.00E-21	T	C	0.4735	0.5994	0.753	0.5865	0.6411	0.6107	C	ANC	misc	8060
rs16864170	20383146	Kottgen A	Chronic kidney disease	miscellaneous_diseases	"Up to 67,093 European ancestry individuals"	EUR	2p25.2	2	5767748	1.3	C	2.00E-07	T	C	0.0182	0.0216	0.001	0.0567	0.1401	0.04752	T	DER	misc	67093
rs16879765	21732829	Dolmans GH	Dupuytren's disease	miscellaneous_diseases	"856 European ancestry cases, 2,836 European ancestry controls"	EUR	7p14.1	7	37949493	1.98	T	6.00E-39	C	T	0.1687	0.1484	0.0982	0.0964	0.1513	0.1326	C	DER	misc	3692
rs1690139	25234806	Dijkstra AE	Chronic mucus hypersecretion	miscellaneous_diseases	"342 European ancestry cases, 1,006 European ancestry controls"	EUR	12q21.2	12	75878897	1.67	C	6.00E-06	T	C	0.3086	0.1671	0.372	0.1233	0.2607	0.24634	T	DER	misc	1348
rs16937456	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	8q13.3	8	71165720	1.4	G	2.00E-12	A	G	0.3011	0.2262	0.1905	0.1163	0.136	0.19402	A	DER	misc	6492
rs16937883	19187332	Kim SH	Asthma (toluene diisocyanate-induced)	miscellaneous_diseases	"84 Korean ancestry cases, 263 Korean ancestry controls"	EAS	9p21.3	9	20098713	5.29	G	7.00E-06	A	G	0.1914	0.1153	0.0238	0.1143	0.1155	0.11206	A	DER	misc	347
rs16946160	21441931	Okamoto K	Nephrotic syndrome (acquired)	miscellaneous_diseases	"195 Japanese ancestry cases, 1,546 Japanese ancestry controls"	EAS	13q31.3	13	91551559	1.39	A	3.00E-07	G	A	0.2239	0.232	0.2272	0.0596	0.0706	0.16266	G	DER	misc	1741
rs16948876	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	16q12.1	16	50820507	1.39	A	4.00E-11	G	A	0.0045	0.0865	0.0298	0.0696	0.0389	0.04586	G	DER	misc	8060
rs16958445	24938310	Nakano M	Exfoliation glaucoma or exfoliation syndrome	miscellaneous_diseases	"201 Japanese ancestry cases, 697 Japanese ancestry controls"	EAS	15q24.1	15	73884216	5.18	G	2.00E-16	G	A	0.9992	0.9971	0.8393	0.9911	0.8681	0.93896	G	ANC	misc	898
rs16999165	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	20q13.2	20	54190682	1.19	A	2.00E-08	A	G	0.91	0.902	0.7192	0.9652	0.9335	0.88598	G	DER	misc	9443
rs1701704	21804548	Hirota T	Asthma	miscellaneous_diseases	"1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls"	EAS	12q13.2	12	56018703	1.19	G	2.00E-13	T	G	0.0825	0.2046	0.2004	0.328	0.2331	0.20972	T	DER	misc	4836
rs17019602	25305756	Kiryluk K	IgA nephropathy	miscellaneous_diseases	"1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls"	EAS	1p13.3	1	107646236	1.17	G	7.00E-09	A	G	0.1702	0.2305	0.1865	0.1998	0.2239	0.20218	A	DER	misc	6699
rs17084051	22144915	Fan Q	Corneal astigmatism	miscellaneous_diseases	"1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malay ancestry cases, 1,220 Malay ancestry controls"	MIX	4q12	4	54221414	1.21	A	2.00E-06	C	A	0.3555	0.3905	0.2202	0.2068	0.2566	0.28592	C	DER	misc	4254
rs1713985	21909106	Arakawa S	Age-related macular degeneration	miscellaneous_diseases	"827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	EAS	4q12	4	56920284	1.3	G	2.00E-08	G	T	0.0136	0.1052	0.3105	0.0934	0.2658	0.1577	T	DER	misc	4150
rs17175227	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	14q24.2	14	70035333	7.1429	G	9.00E-09	G	A	0.9644	0.9899	0.9603	0.9781	0.9908	0.9767	G	ANC	misc	733
rs17208368	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	16q12.2	16	55038095	1.41	A	3.00E-15	C	A	0.0567	0.2522	0.1161	0.169	0.1278	0.14436	C	DER	misc	6492
rs17217757	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	8q23.1	8	105601093	2.3256	G	3.00E-06	G	C	0.8812	0.8184	0.8313	0.7913	0.728	0.81004	C	DER	misc	733
rs17262815	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	8q24.21	8	129478919	1.36	C	2.00E-12	T	C	0.1097	0.098	0.0546	0.166	0.3006	0.14578	T	DER	misc	6492
rs17348202	23776197	Leandro-Garcia LJ	Paclitaxel-induced neuropathy	miscellaneous_diseases	143 European ancestry individuals	EUR	2q36.1	2	221207458	4.85	C	1.00E-06	T	C	0.0136	0.0576	0.001	0.0527	0.1063	0.04624	T	DER	misc	143
rs17551536	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	2p24.3	2	12112224	1.4706	G	5.00E-06	A	G	0.2678	0.1138	0.0089	0.161	0.2065	0.1516	A	DER	misc	1726
rs17586843	23326517	Holliday EG	Age-related macular degeneration	miscellaneous_diseases	"3,772 European ancestry cases, 16,033 European ancestry controls"	EUR	4q26	4	116003028	1.18	T	2.00E-06	T	C	0.9803	0.8804	0.8611	0.7634	0.7526	0.84756	T	ANC	misc	19805
rs176095	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	6p21.32	6	32190542	1.4	A	8.00E-20	A	G	0.6944	0.8415	0.8085	0.7962	0.7628	0.78068	A	ANC	misc	9443
rs17642749	24824216	Myers RA	Asthma (sex interaction)	miscellaneous_diseases	"1,052 European ancestry male cases, 1,019 European ancestry female cases, 709 European ancestry male controls, 826 European ancestry female controls, 675 African American/African Caribbean male cases, 837 African American/African Caribbean female cases, 577 African American/African Caribbean male controls, 926 African American/African Caribbean female controls, 926 Latino male cases, 710 Latino female cases, 410 Latino male controls, 382 Latino female controls"	MIX	10q26.11	10	117887745	2.97	G	4.00E-07	T	G	0.0363	0.049	0.001	0.0696	0.0184	0.03486	T	DER	misc	9049
rs17690703	24429156	Noth I	Idiopathic pulmonary fibrosis	miscellaneous_diseases	"542 European ancestry cases, 542 European ancestry controls"	EUR	17q21.31	17	45847931	1.43	C	6.00E-09	C	T	0.9584	0.8199	0.9325	0.7237	0.908	0.8685	C	ANC	misc	1084
rs17712049	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	7p12.3	7	48226598	1.569	C	4.00E-06	T	C	0.8971	0.7522	0.8095	0.8907	0.7894	0.82778	C	ANC	misc	48020
rs17747401	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	10q22.2	10	74640406	1.2	T	1.00E-07	C	T	0.0393	0.2291	0.0218	0.3936	0.1718	0.17112	C	DER	misc	6492
rs17760296	20023658	Mangold E	Orofacial clefts	miscellaneous_diseases	"399 European ancestry cases, 1,318 European ancestry controls"	EUR	17q22	17	56538256	1.5	G	7.00E-06	T	G	0.0219	0.0764	0.0079	0.167	0.0542	0.06548	T	DER	misc	1717
rs1794275	22197929	Yu XQ	IgA nephropathy	miscellaneous_diseases	"1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls"	EAS	6p21.32	6	32703471	1.3	A	3.00E-13	G	A	0.264	0.2435	0.1736	0.2247	0.182	0.21756	G	DER	misc	5704
rs1801085	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	7p15.2	7	27128971	1.45	G	1.00E-11	A	G	0.3268	0.2478	0.1369	0.0994	0.0665	0.17548	A	DER	misc	6492
rs1819084	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	11p15.2	11	13974608	6.25	C	9.00E-06	C	A	0.907	0.7205	0.5258	0.7396	0.7607	0.73072	C	ANC	misc	733
rs181947843	24927181	Navarini AA	Acne (severe)	miscellaneous_diseases	"1,893 European ancestry cases, 5,132 European ancestry controls"	EUR	12q23.3	12	108153610	2.17	A	5.00E-06	G	A	0	0.0043	0	0.006	0.001	0.00226	G	DER	misc	7025
rs1837253	21804548	Hirota T	Asthma	miscellaneous_diseases	"1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls"	EAS	5q22.1	5	111066174	1.17	C	1.00E-16	T	C	0.6876	0.732	0.3938	0.7475	0.5399	0.62016	T	DER	misc	4836
rs1858800	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	16q22.3	16	72990377	1.36	T	1.00E-18	C	T	0.1566	0.2767	0.0883	0.3479	0.3149	0.23688	C	DER	misc	6492
rs1864163	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	16q13	16	56963321	1.22	G	7.00E-16	G	A	0.7186	0.7565	0.8651	0.7296	0.7515	0.76426	G	ANC	misc	59494
rs187293906	24927181	Navarini AA	Acne (severe)	miscellaneous_diseases	"1,893 European ancestry cases, 5,132 European ancestry controls"	EUR	2p13.3	2	70438530	3.27	T	5.00E-06	C	T	0	0	0	0.004	0	8.00E-04	C	DER	misc	7025
rs1894116	22885925	Shi Y	Polycystic ovary syndrome	miscellaneous_diseases	"2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls"	EAS	11q22.1	11	102199908	1.27	G	1.00E-22	A	G	0.0741	0.049	0.1835	0.0746	0.2188	0.12	A	DER	misc	5255
rs1900442	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	13q14.11	13	41931538	2.7027	T	5.00E-06	T	C	0.5363	0.7104	0.5556	0.6899	0.6933	0.6371	C	DER	misc	733
rs1912816	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	8q23.3	8	113861151	1.2821	A	6.00E-06	A	G	0.3321	0.6974	0.752	0.7286	0.6646	0.63494	A	ANC	misc	1726
rs1918690	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	2p11.2	2	84679791	1.27	T	4.00E-09	T	C	0.3797	0.219	0.0923	0.2028	0.1554	0.20984	C	DER	misc	6492
rs1925714	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	1q42.13	1	228515588	2.8571	G	2.00E-07	A	G	0.7678	0.7997	0.8978	0.7952	0.8691	0.82592	G	ANC	misc	733
rs192917960	25027321	Hoffmann TJ	Glaucoma	miscellaneous_diseases	"658 African American prevalent cases, 1,062 African American incident cases, 6,067 African American controls, 153 Hispanic prevalent cases, 336 Hispanic incident cases, 2,685 Hispanic controls"	MIX	16p13.3	16	5869654	2.14	T	1.00E-08	C	T	0	0.0072	0	0	0	0.00144	C	DER	misc	10961
rs1929494	25352737	Ritchie MD	Age-related cataracts	miscellaneous_diseases	"5,503 European, Black, and other ancestry cases age 50 and older, 1,894 European, Black, and other ancestry controls age 50 and older"	MIX	9q31.1	9	101474492	1.217	A	2.00E-06	G	A	0.2428	0.3674	0.4673	0.4513	0.5501	0.41578	G	DER	misc	7497
rs1934954	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	10q23.33	10	95032445	7.1429	T	3.00E-06	T	C	0.9917	0.9207	0.999	0.9185	0.9775	0.96148	T	ANC	misc	733
rs1944146	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	11q24.3	11	130820267	1.08	A	3.00E-06	A	G	0.708	0.67	0.5575	0.5278	0.5726	0.60718	A	ANC	misc	48020
rs1970671	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	18q21.2	18	55195877	1.37	G	3.00E-06	C	G	0.1074	0.3026	0.5	0.3161	0.4499	0.3352	C	DER	misc	2829
rs1980493	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.32	6	32395438	2.87	C	1.00E-48	T	C	0.0991	0.0605	0.0317	0.1173	0.0164	0.065	T	DER	misc	2894
rs1981997	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	17q21.31	17	45979401	1.41	G	9.00E-14	G	A	0.9811	0.8429	0.999	0.7594	0.9387	0.90422	G	ANC	misc	5844
rs2024825	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	1p31.3	1	67132294	1.5873016	T	4.00E-33	T	C	0.2451	0.1686	0.0962	0.1928	0.0706	0.15466	C	DER	misc	8060
rs2034650	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	15q15.1	15	40425103	1.3	A	1.00E-11	G	A	0.1604	0.6095	0.7659	0.4881	0.6626	0.5373	G	DER	misc	5844
rs2044029	22837378	Wilk JB	Airflow obstruction	miscellaneous_diseases	"up to 3,368 European ancestry cases, up to 29,507 European ancestry controls"	EUR	15q23	15	71387620	1.17	A	1.00E-07	A	G	0.3933	0.3977	0.2798	0.3807	0.5256	0.39542	A	ANC	misc	32875
rs2045084	23585552	Kirin M	Rhegmatogenous retinal detachment	miscellaneous_diseases	"867 European ancestry cases, 1,953 European ancestry controls"	EUR	8q24.3	8	143611669	1.16	C	3.00E-06	C	T	0.969	0.5548	0.7698	0.3926	0.6339	0.66402	C	ANC	misc	2820
rs204993	21804548	Hirota T	Asthma	miscellaneous_diseases	"1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls"	EAS	6p21.32	6	32187804	1.17	A	2.00E-15	A	G	0.6846	0.8156	0.6052	0.7535	0.6728	0.70634	G	DER	misc	4836
rs204999	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	"6p21.32, 6p21.32[rs204999]; 6p21.32[rs9268528]"	6	32142202	2.44	G	9.00E-40	A	G	0.3994	0.2118	0.0823	0.2763	0.2219	0.23834	G	ANC	misc	2894
rs2057178	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	11p13	11	32342641	1.6129	A	3.00E-06	G	A	0.3177	0.0836	0.0655	0.1421	0.2157	0.16492	G	DER	misc	733
rs2059807	22885925	Shi Y	Polycystic ovary syndrome	miscellaneous_diseases	"2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls"	EAS	19p13.2	19	7166098	1.14	G	1.00E-08	A	G	0.823	0.4769	0.3671	0.6173	0.683	0.59346	G	ANC	misc	5255
rs2069408	21804548	Hirota T	Asthma	miscellaneous_diseases	"1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls"	EAS	12q13.2	12	55970537	1.15	G	1.00E-10	A	G	0.056	0.1931	0.2212	0.3201	0.1769	0.19346	A	DER	misc	4836
rs2071277	22694956	Cipriani V	Age-related macular degeneration	miscellaneous_diseases	"893 European ancestry cases, 2,199 European ancestry controls"	EUR	6p21.32	6	32203906	1.3	C	2.00E-11	T	C	0.3812	0.4121	0.4286	0.4811	0.5961	0.45982	C	ANC	misc	3092
rs2071543	25305756	Kiryluk K	IgA nephropathy	miscellaneous_diseases	"1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls"	EAS	6p21.32	6	32843852	1.41	G	2.00E-09	G	T	0.9039	0.8112	0.8323	0.8529	0.8098	0.84202	G	ANC	misc	6699
rs2073643	20860503	Moffatt MF	Asthma	miscellaneous_diseases	"10,365 cases, 16,110 controls"	EUR	5q31.1	5	132387596	1.11	T	2.00E-07	T	C	0.6369	0.6124	0.6667	0.4702	0.8292	0.64308	T	ANC	misc	26475
rs2076295	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	6p24.3	6	7562999	1.43	G	1.00E-19	T	G	0.5121	0.4207	0.4712	0.4145	0.3129	0.42628	G	ANC	misc	5844
rs2115386	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	19p13.2	19	7196554	1.12	C	3.00E-06	C	T	0.5408	0.5259	0.4623	0.5169	0.5153	0.51224	C	ANC	misc	2829
rs2164983	22197932	Paternoster L	Atopic dermatitis	miscellaneous_diseases	"5,606 European ancestry cases, 20,565 European ancestry controls"	EUR	19p13.2	19	8679120	1.16	A	7.00E-09	C	A	0.2405	0.2046	0.1131	0.173	0.0992	0.16608	C	DER	misc	26171
rs2172873	21460842	Cha PC	Uterine fibroids	miscellaneous_diseases	"1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls"	EAS	12q23.2	12	102731912	1.18	A	2.00E-06	G	A	0.3699	0.0706	0.0873	0.0398	0.1022	0.13396	A	ANC	misc	3035
rs2179367	21732829	Dolmans GH	Dupuytren's disease	miscellaneous_diseases	"856 European ancestry cases, 2,836 European ancestry controls"	EUR	6q25.1	6	149441401	1.23	G	3.00E-07	A	G	0.73	0.5965	0.7847	0.3678	0.5123	0.59826	A	DER	misc	3692
rs2202157	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	3p24.1	3	26501929	4	T	8.00E-07	C	T	0.0106	0.1859	0.2629	0.1551	0.1605	0.155	C	DER	misc	733
rs2221593	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	1q32.3	1	212700089	1.15	T	3.00E-08	C	T	0.0779	0.085	0.1875	0.1233	0.3374	0.16222	C	DER	misc	8060
rs2230199	22705344	Sobrin L	Age-related macular degeneration (GA)	miscellaneous_diseases	"819 European ancestry geographic atrophy cases, 4,134 European ancestry controls"	EUR	19p13.3	19	6718376	1.83	C	5.00E-13	G	C	0.0333	0.0965	0.003	0.2207	0.1033	0.09136	G	DER	misc	4953
rs2230199	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	19p13.3	19	6718376	1.42	C	1.00E-41	G	C	0.0333	0.0965	0.003	0.2207	0.1033	0.09136	G	DER	misc	59494
rs2230199	22705344	Sobrin L	Age-related macular degeneration (CNV)	miscellaneous_diseases	"1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls"	EUR	19p13.3	19	6718376	1.61	C	1.00E-12	G	C	0.0333	0.0965	0.003	0.2207	0.1033	0.09136	G	DER	misc	5909
rs2231142	21983786	Sulem P	Gout	miscellaneous_diseases	"968 European ancestry cases, 40,000 European ancestry controls"	EUR	4q22.1	4	88131171	1.67	T	3.00E-12	G	T	0.0129	0.1412	0.2907	0.0944	0.0971	0.12726	G	DER	misc	40968
rs2233956	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.33	6	31113428	2.77	C	6.00E-48	T	C	0.0234	0.0749	0.0188	0.1521	0.1186	0.07756	T	DER	misc	2894
rs2244012	20159242	Li X	Asthma	miscellaneous_diseases	"607 European ancestry cases, 3,294 European ancestry controls"	EUR	5q31.1	5	132565533	1.64	G	3.00E-07	A	G	0.6641	0.1873	0.1875	0.1978	0.226	0.29254	G	ANC	misc	3901
rs225848	22445761	Kurose K	Sexual dysfunction (SSRI/SNRI-related)	miscellaneous_diseases	201 Japanese ancestry individuals	EAS	14q12	14	30125451	4.42	G	1.00E-06	G	A	0.1241	0.0591	0.0248	0.0726	0.0276	0.06164	A	DER	misc	201
rs2268361	22885925	Shi Y	Polycystic ovary syndrome	miscellaneous_diseases	"2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls"	EAS	2p16.3	2	48974473	1.15	C	1.00E-12	C	T	0.7542	0.3718	0.496	0.3579	0.4622	0.48842	C	ANC	misc	5255
rs2270368	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	16q12.1	16	50680424	1.5	G	1.00E-67	G	A	0.3555	0.451	0.7798	0.2654	0.7035	0.51104	A	DER	misc	8060
rs2271404	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	2q13	2	111246290	1.17	C	3.00E-07	T	C	0.0764	0.1023	0.2867	0.1392	0.0429	0.1295	T	DER	misc	9443
rs2272046	22885925	Shi Y	Polycystic ovary syndrome	miscellaneous_diseases	"2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls"	EAS	12q14.3	12	65830681	1.43	A	2.00E-21	A	C	0.9992	0.987	0.9196	0.9742	0.9724	0.97048	A	ANC	misc	5255
rs2275606	22019778	Zhang F	Leprosy	miscellaneous_diseases	"706 Han Chinese ancestry cases, 5,581 Han Chinese ancestry controls"	EAS	6q24.3	6	146597814	1.3	A	4.00E-14	G	A	0.0998	0.062	0.2688	0.0706	0.1564	0.13152	G	DER	misc	6287
rs2276035	25173105	Gharahkhani P	Glaucoma (primary open-angle)	miscellaneous_diseases	"1,155 European ancestry cases, 1,922 European ancestry controls"	EUR	11q23.3	11	120475651	1.18	A	8.00E-06	G	A	0.2511	0.1513	0.2391	0.164	0.227	0.2065	G	DER	misc	3077
rs227731	20023658	Mangold E	Orofacial clefts	miscellaneous_diseases	"399 European ancestry cases, 1,318 European ancestry controls"	EUR	17q22	17	56695877	1.38	G	1.00E-08	T	G	0.7806	0.3516	0.3185	0.4523	0.3824	0.45708	G	ANC	misc	1717
rs2280543	21460842	Cha PC	Uterine fibroids	miscellaneous_diseases	"1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls"	EAS	11p15.5	11	203788	1.39	C	4.00E-12	C	T	0.9349	0.9611	0.8452	0.9672	0.8947	0.92062	C	ANC	misc	3035
rs2285714	20385819	Chen W	Age-related macular degeneration	miscellaneous_diseases	"2,157 European ancestry cases, 1,150 European ancestry controls"	EUR	4q25	4	109717654	1.31	T	3.00E-07	C	T	0.0234	0.3703	0.2014	0.3926	0.3865	0.27484	C	DER	misc	3307
rs2305480	24241537	Bonnelykke K	Asthma (childhood onset)	miscellaneous_diseases	"1,173 European ancestry cases, 2,511 European ancestry controls"	EUR	"17q12, 17q21.1"	17	39905943	1.32	G	6.00E-23	G	A	0.8926	0.6643	0.7183	0.5338	0.6851	0.69882	G	ANC	misc	3684
rs2305480	20860503	Moffatt MF	Asthma	miscellaneous_diseases	"10,365 cases, 16,110 controls"	EUR	"17q12, 17q21.1"	17	39905943	1.18	G	1.00E-07	G	A	0.8926	0.6643	0.7183	0.5338	0.6851	0.69882	G	ANC	misc	26475
rs2309717	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	4p15.1	4	28248616	1.143	A	1.00E-06	C	A	0.2799	0.2334	0.3075	0.1392	0.2045	0.2329	C	DER	misc	48020
rs231779	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	2q33.2	2	203869764	1.126	T	7.00E-06	C	T	0.4501	0.464	0.6379	0.3529	0.2965	0.44028	C	DER	misc	39282
rs2334880	22895189	Timmann C	Malaria	miscellaneous_diseases	"1,325 African ancestry, 828 African ancestry controls"	AFR	16q22.2	16	71619734	1.19	G	2.00E-06	A	G	0.6021	0.8977	0.9911	0.84	0.9806	0.8623	A	DER	misc	2153
rs2335704	20694014	Thye T	Tuberculosis	miscellaneous_diseases	"2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls"	AFR	2q33.3	2	205000109	1.19	C	2.00E-06	C	A	0.2073	0.1037	0.0069	0.1352	0.0716	0.10494	A	DER	misc	5359
rs2441727	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	10q21.3	10	66465128	1.35	G	1.00E-06	A	G	0.4803	0.2118	0.8532	0.0567	0.411	0.4026	G	ANC	misc	5844
rs2455012	24847357	Ye Z	Staphylococcus aureus infection	miscellaneous_diseases	"309 European ancestry cases, 2,925 European ancestry controls"	EAS	1p31.3	1	66055315	2.17	A	7.00E-07	A	G	0.0348	0.0317	0.0298	0.0467	0.0337	0.03534	G	DER	misc	3234
rs2472493	25173105	Gharahkhani P	Glaucoma (primary open-angle)	miscellaneous_diseases	"1,155 European ancestry cases, 1,922 European ancestry controls"	EUR	9q31.1	9	104933567	1.31	G	2.00E-19	G	A	0.3109	0.353	0.5139	0.4185	0.3517	0.3896	A	DER	misc	3077
rs2479106	21151128	Chen ZJ	Polycystic ovary syndrome	miscellaneous_diseases	"744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls"	EAS	9q33.3	9	123762933	1.34	G	8.00E-19	A	G	0.8238	0.2954	0.1835	0.2962	0.3027	0.38032	G	ANC	misc	1639
rs248471	23406873	Shi Y	Myopia (pathological)	miscellaneous_diseases	"665 Han Chinese ancestry cases, 960 Han Chinese ancestry controls"	EAS	5q31.3	5	141809602	1.19	G	2.00E-06	G	A	0.4213	0.4193	0.3234	0.5199	0.6115	0.45908	G	ANC	misc	1625
rs2505675	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	6p25.2	6	2355441	4.5455	T	4.00E-06	C	T	0.5393	0.4712	0.5704	0.337	0.3855	0.46068	T	ANC	misc	733
rs2517532	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	6p21.33	6	31050630	1.16	G	1.00E-08	A	G	0.6762	0.6023	0.5069	0.5746	0.5286	0.57772	G	ANC	misc	39282
rs2523946	22197929	Yu XQ	IgA nephropathy	miscellaneous_diseases	"1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls"	EAS	6p22.1	6	29974166	1.21	C	2.00E-11	C	T	0.4455	0.4092	0.5437	0.5119	0.6074	0.50354	T	DER	misc	5704
rs2549003	24824216	Myers RA	Asthma (sex interaction)	miscellaneous_diseases	"1,052 European ancestry male cases, 1,019 European ancestry female cases, 709 European ancestry male controls, 826 European ancestry female controls, 675 African American/African Caribbean male cases, 837 African American/African Caribbean female cases, 577 African American/African Caribbean male controls, 926 African American/African Caribbean female controls, 926 Latino male cases, 710 Latino female cases, 410 Latino male controls, 382 Latino female controls"	MIX	5q31.1	5	132493605	1.33	G	9.00E-07	G	A	0.5582	0.3602	0.3829	0.3439	0.4356	0.41616	G	ANC	misc	9049
rs2609255	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	4q22.1	4	88890044	1.29	G	2.00E-11	G	T	0.3048	0.3012	0.4167	0.2406	0.4796	0.34858	T	DER	misc	5844
rs2648875	17395743	Hanson RL	End-stage renal disease	miscellaneous_diseases	"105 Pima Indian ancestry cases, 102 Pima Indian ancestry controls"	AMR	8q24.21	8	128059915	2.97	A	2.00E-06	G	A	0.4697	0.4078	0.6052	0.2336	0.5317	0.4496	A	ANC	misc	207
rs2675724	24824216	Myers RA	Asthma (sex interaction)	miscellaneous_diseases	"1,052 European ancestry male cases, 1,019 European ancestry female cases, 709 European ancestry male controls, 826 European ancestry female controls, 675 African American/African Caribbean male cases, 837 African American/African Caribbean female cases, 577 African American/African Caribbean male controls, 926 African American/African Caribbean female controls, 926 Latino male cases, 710 Latino female cases, 410 Latino male controls, 382 Latino female controls"	MIX	6q27	6	165152406	1.44	A	2.00E-07	A	C	0.2443	0.6153	0.4345	0.7286	0.6564	0.53582	C	DER	misc	9049
rs267738	23585552	Kirin M	Rhegmatogenous retinal detachment	miscellaneous_diseases	"867 European ancestry cases, 1,953 European ancestry controls"	EUR	1q21.3	1	150968149	1.23	T	1.00E-07	T	G	0.9939	0.9049	0.9742	0.8091	0.9499	0.9264	T	ANC	misc	2820
rs2679084	25344690	Feenstra B	Febrile seizures (MMR vaccine-related)	miscellaneous_diseases	"929 European ancestry cases, 4,118 European ancestry controls"	EUR	15q25.3	15	87423713	1.86	T	1.00E-06	T	C	0.6672	0.8314	0.9752	0.9543	0.9141	0.86844	T	ANC	misc	5047
rs2696835	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	16q24.1	16	86331965	2.27	C	3.00E-06	C	G	0.0023	0.0159	0	0.0219	0.0123	0.01048	G	DER	misc	2829
rs2710323	25173105	Gharahkhani P	Glaucoma (primary open-angle)	miscellaneous_diseases	"1,155 European ancestry cases, 1,922 European ancestry controls"	EUR	3p21.1	3	52781889	1.14	T	5.00E-06	T	C	0.2784	0.3991	0.5853	0.495	0.6769	0.48694	C	DER	misc	3077
rs2724384	25344690	Feenstra B	Febrile seizures	miscellaneous_diseases	"929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls"	EUR	1q32.2	1	207756858	1.47	A	2.00E-09	G	A	0.8253	0.7205	0.9901	0.7972	0.8579	0.8382	A	ANC	misc	6117
rs2730260	23406873	Shi Y	Myopia (pathological)	miscellaneous_diseases	"665 Han Chinese ancestry cases, 960 Han Chinese ancestry controls"	EAS	7q36.3	7	159054238	1.33	G	9.00E-14	G	T	0.5166	0.1643	0.2024	0.1909	0.1728	0.2494	G	ANC	misc	1625
rs273259	25344690	Feenstra B	Febrile seizures (MMR vaccine-related)	miscellaneous_diseases	"929 European ancestry cases, 4,118 European ancestry controls"	EUR	1p31.1	1	78628133	1.41	A	6.00E-12	A	G	0.6392	0.6455	0.249	0.6551	0.59	0.55576	G	DER	misc	5047
rs273259	25344690	Feenstra B	Febrile seizures	miscellaneous_diseases	"929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls"	EUR	1p31.1	1	78628133	1.42	A	1.00E-09	A	G	0.6392	0.6455	0.249	0.6551	0.59	0.55576	G	DER	misc	6117
rs2733954	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	16q24.1	16	85802650	1.14	C	4.00E-07	T	C	0.3026	0.4092	0.7232	0.1978	0.3221	0.39098	T	DER	misc	8060
rs2736100	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	5p15.33	5	1286401	1.37	A	2.00E-19	C	A	0.5325	0.572	0.5853	0.501	0.3947	0.5171	A	ANC	misc	5844
rs2736100	18835860	Mushiroda T	Idiopathic pulmonary fibrosis	miscellaneous_diseases	"159 Japanese ancestry cases, 934 Japanese ancestry controls"	EAS	5p15.33	5	1286401	2.11	A	3.00E-08	C	A	0.5325	0.572	0.5853	0.501	0.3947	0.5171	A	ANC	misc	1093
rs275456	23776197	Leandro-Garcia LJ	Paclitaxel-induced neuropathy	miscellaneous_diseases	143 European ancestry individuals	EUR	5p15.31	5	6813824	2.26	T	3.00E-06	G	T	0.0136	0.2853	0.246	0.2773	0.3476	0.23396	G	DER	misc	143
rs2786189	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	6q24.3	6	147209945	1.4706	G	5.00E-06	G	T	0.0764	0.5043	0.2907	0.4742	0.4642	0.36196	T	DER	misc	1726
rs2819742	21386754	Marciante KD	Cerivastatin-induced rhabdomyolysis	miscellaneous_diseases	"168 European ancestry cases, 636 European ancestry controls, 17 cases, 96 controls"	EUR	1q43	1	237826822	2.08	G	2.00E-07	A	G	0.9788	0.6585	0.9435	0.5954	0.8252	0.80028	G	ANC	misc	917
rs2837857	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	21q22.2	21	40845029	3.3333	T	2.00E-06	C	T	0.5764	0.2723	0.2738	0.1948	0.2219	0.30784	C	DER	misc	733
rs28405582	24927181	Navarini AA	Acne (severe)	miscellaneous_diseases	"1,893 European ancestry cases, 5,132 European ancestry controls"	EUR	3p24.2	3	23863271	11.67	C	1.00E-06	T	C	0.1589	0.0259	0	0.003	0	0.03756	T	DER	misc	7025
rs2844665	21801394	Genin E	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	miscellaneous_diseases	"424 European ancestry cases, 1,881 European ancestry controls"	EUR	6p21.33	6	31039078	1.54	C	3.00E-07	T	C	0.7126	0.6167	0.4742	0.6312	0.6544	0.61782	C	ANC	misc	2305
rs2856717	25305756	Kiryluk K	IgA nephropathy	miscellaneous_diseases	"1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls"	EAS	6p21.32	6	32702531	1.27	G	1.00E-15	A	G	0.6808	0.7939	0.8115	0.659	0.7311	0.73526	G	ANC	misc	6699
rs2869966	25241909	Lee JH	Chronic obstructive pulmonary disease	miscellaneous_diseases	"3,777 European ancestry cases, 3,520 European ancestry smoker controls"	EUR	4q22.1	4	88947927	1.29	T	7.00E-10	C	T	0.5976	0.4121	0.5417	0.3996	0.3885	0.4679	C	DER	misc	7297
rs2869967	25241909	Lee JH	Chronic bronchitis and chronic obstructive pulmonary disease	miscellaneous_diseases	"up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls"	EUR	4q22.1	4	88948181	1.38	C	6.00E-10	T	C	0.6702	0.4207	0.5417	0.3996	0.3885	0.48414	C	ANC	misc	7113
rs2897442	22197932	Paternoster L	Atopic dermatitis	miscellaneous_diseases	"5,606 European ancestry cases, 20,565 European ancestry controls"	EUR	5q31.1	5	132713335	1.11	C	4.00E-08	C	T	0.9334	0.5159	0.8333	0.2903	0.3292	0.58042	T	DER	misc	26171
rs2947253	23776197	Leandro-Garcia LJ	Paclitaxel-induced neuropathy	miscellaneous_diseases	143 European ancestry individuals	EUR	15q14	15	35757291	3.38	G	4.00E-06	G	A	0.0272	0.2334	0.1796	0.1054	0.1104	0.1312	A	DER	misc	143
rs2999052	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	3q21.3	3	128173194	1.55	T	1.00E-26	T	C	0.652	0.6801	0.8899	0.7376	0.6288	0.71768	C	DER	misc	6492
rs3007729	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	1p36.13	1	18468761	1.35	T	5.00E-06	T	C	0.562	0.6225	0.3423	0.6421	0.6227	0.55832	C	DER	misc	2829
rs3019885	21814517	Noguchi E	Asthma	miscellaneous_diseases	"938 Japanese ancestry cases, 2,376 Japanese ancestry controls"	EAS	8q24.11	8	117013406	1.34	G	5.00E-13	T	G	0.1029	0.5504	0.2867	0.4602	0.5164	0.38332	T	DER	misc	3314
rs3021304	25108386	Hou S	Vogt-Koyanagi-Harada syndrome	miscellaneous_diseases	"774 Han Chinese ancestry cases, 2,009 Han Chinese ancestry controls"	EAS	6p21.32	6	32607881	2.97	G	1.00E-118	G	C	0.3933	0.4856	0.3889	0.508	0.6186	0.47888	C	DER	misc	2783
rs3094188	21801394	Genin E	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	miscellaneous_diseases	"424 European ancestry cases, 1,881 European ancestry controls"	EUR	6p21.33	6	31174468	1.59	A	3.00E-08	C	A	0.7663	0.7219	0.7381	0.673	0.6074	0.70134	C	DER	misc	2305
rs3094604	25344690	Feenstra B	Febrile seizures (MMR vaccine-related)	miscellaneous_diseases	"929 European ancestry cases, 4,118 European ancestry controls"	EUR	6p21.33	6	31466334	1.39	A	1.00E-07	A	G	0.879	0.9236	0.8363	0.8598	0.82	0.86374	A	ANC	misc	5047
rs3096697	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.32	6	32166733	2.58	A	1.00E-41	G	A	0.2095	0.1023	0.0367	0.2008	0.1943	0.14872	G	DER	misc	2894
rs3115663	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.33	6	31634066	3.04	C	7.00E-57	T	C	0.2239	0.0793	0.0714	0.1461	0.1155	0.12724	C	ANC	misc	2894
rs3116139	25027321	Hoffmann TJ	Glaucoma	miscellaneous_diseases	"658 African American prevalent cases, 1,062 African American incident cases, 6,067 African American controls, 153 Hispanic prevalent cases, 336 Hispanic incident cases, 2,685 Hispanic controls"	MIX	19q13.41	19	51375780	1.75	C	3.00E-08	C	T	0.0182	0.2968	0.2837	0.2883	0.3589	0.24918	T	DER	misc	10961
rs3117098	21804548	Hirota T	Asthma	miscellaneous_diseases	"1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls"	EAS	6p21.32	6	32390736	1.16	G	5.00E-12	G	A	0.1921	0.2925	0.2579	0.2903	0.2352	0.2536	A	DER	misc	4836
rs3126085	21666691	Sun LD	Atopic dermatitis	miscellaneous_diseases	"1,012 Han Chinese ancestry cases, 1,362 Han Chinese ancestry controls"	EAS	1q21.3	1	152328341	1.22	A	6.00E-12	G	A	0.5477	0.4294	0.6329	0.1441	0.4346	0.43774	A	ANC	misc	2374
rs312691	22863731	Cheung CL	Thyrotoxic hypokalemic periodic paralysis	miscellaneous_diseases	"69 Chinese ancestry cases, 1,170 East Asian ancestry controls"	EAS	17q24.3	17	70330197	3.2	C	8.00E-14	T	C	0.2489	0.2752	0.4573	0.2684	0.1708	0.28412	T	DER	misc	1239
rs3129939	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.32	6	32368989	2.6	G	2.00E-40	A	G	0.1241	0.0865	0.0962	0.1551	0.1789	0.12816	A	DER	misc	2894
rs3129943	21804548	Hirota T	Asthma	miscellaneous_diseases	"1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls"	EAS	6p21.32	6	32370918	1.17	A	3.00E-15	A	G	0.6815	0.8285	0.631	0.7465	0.635	0.7045	A	ANC	misc	4836
rs3130501	21801394	Genin E	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	miscellaneous_diseases	"424 European ancestry cases, 1,881 European ancestry controls"	EUR	6p21.33	6	31168676	1.74	G	2.00E-08	A	G	0.8699	0.8141	0.6766	0.7833	0.682	0.76518	G	ANC	misc	2305
rs3130544	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.33	6	31090563	3.34	A	9.00E-58	C	A	0.0091	0.0288	0	0.0815	0	0.02388	C	DER	misc	2894
rs3130564	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.33	6	31133897	2.62	T	1.00E-42	C	T	0.056	0.062	0.001	0.16	0.0092	0.05764	C	DER	misc	2894
rs3130618	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.33	6	31664357	3.03	A	2.00E-56	C	A	0.2126	0.0793	0.0714	0.1461	0.1155	0.12498	C	DER	misc	2894
rs3130618	25344690	Feenstra B	Febrile seizures (MMR vaccine-related)	miscellaneous_diseases	"929 European ancestry cases, 4,118 European ancestry controls"	EUR	6p21.33	6	31664357	1.34	C	2.00E-07	C	A	0.7874	0.9207	0.9286	0.8539	0.8845	0.87502	C	ANC	misc	5047
rs3130783	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	6p21.33	6	30806580	1.16	A	2.00E-11	G	A	0.5847	0.768	0.8294	0.7992	0.909	0.77806	A	ANC	misc	59494
rs3130931	21801394	Genin E	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	miscellaneous_diseases	"424 European ancestry cases, 1,881 European ancestry controls"	EUR	6p21.33	6	31167111	1.54	C	8.00E-07	T	C	0.8646	0.7925	0.6577	0.7326	0.5429	0.71806	T	DER	misc	2305
rs3132580	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.33	6	30952347	2.74	A	3.00E-40	G	A	0.0378	0.0288	0.0159	0.0964	0.0092	0.03762	G	DER	misc	2894
rs3132946	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	6p21.32	6	32222251	1.38	A	8.00E-06	A	G	0.0076	0.0432	0.0069	0.1123	0.0266	0.03932	G	DER	misc	5844
rs3134792	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.33	6	31344549	3.93	G	6.00E-72	T	G	0.0537	0.0303	0.0774	0.0865	0.0941	0.0684	T	DER	misc	2894
rs3134945	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.32	6	32178715	2.54	A	2.00E-40	C	A	0.2095	0.1023	0.0377	0.1998	0.1953	0.14892	C	DER	misc	2894
rs3181157	23776197	Leandro-Garcia LJ	Paclitaxel-induced neuropathy	miscellaneous_diseases	143 European ancestry individuals	EUR	12p13.31	12	6199357	3.22	T	4.00E-06	C	T	0.4319	0.1556	0.1062	0.1054	0.1166	0.18314	C	DER	misc	143
rs3184504	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	12q24.12	12	111446804	1.2	T	3.00E-12	T	C	0.0189	0.2536	0.003	0.4642	0.0685	0.16164	C	DER	misc	39282
rs3213787	20363506	Meguro A	Glaucoma	miscellaneous_diseases	"305 Japanese ancestry cases, 355 Japanese ancestry controls"	EAS	2p21	2	45419685	2.8	A	3.00E-09	A	G	0.9902	0.8631	0.8641	0.9672	0.8937	0.91566	A	ANC	misc	660
rs330071	24927181	Navarini AA	Acne (severe)	miscellaneous_diseases	"1,893 European ancestry cases, 5,132 European ancestry controls"	EUR	8p23.1	8	9302385	1.23	G	9.00E-07	G	A	0.907	0.781	0.9405	0.6292	0.8538	0.8223	G	ANC	misc	7025
rs334353	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	9q22.33	9	99146083	1.13	T	3.00E-11	T	G	0.7663	0.7277	0.5685	0.7584	0.6616	0.6965	T	ANC	misc	59494
rs34391416	25241909	Lee JH	Chronic bronchitis and chronic obstructive pulmonary disease	miscellaneous_diseases	"up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls"	EUR	11p15.5	11	831818	1.93	A	5.00E-08	G	A	0.0015	0.0159	0	0.0378	0.0286	0.01676	G	DER	misc	7113
rs349423	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	1p34.2	1	41831453	2.52	T	9.00E-06	C	T	0.1467	0.0115	0	0	0	0.03164	C	DER	misc	1726
rs35705950	24429156	Noth I	Idiopathic pulmonary fibrosis	miscellaneous_diseases	"542 European ancestry cases, 542 European ancestry controls"	EUR	11p15.5	11	1219991	2.43	T	2.00E-50	G	T	0.003	0.0562	0.0079	0.1074	0.0767	0.05024	G	DER	misc	1084
rs372091	22895189	Timmann C	Malaria	miscellaneous_diseases	"1,325 African ancestry, 828 African ancestry controls"	AFR	11p15.4	11	5496926	2.17	G	6.00E-14	A	G	0.9319	0.9986	1	1	1	0.9861	G	ANC	misc	2153
rs3743104	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	15q13.3	15	32731784	1.24	G	6.00E-10	A	G	0.1762	0.4813	0.5754	0.5944	0.5286	0.47118	A	DER	misc	6492
rs3748682	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	1p34.3	1	37814315	1.19	T	9.00E-06	T	C	0.9395	0.8487	0.7351	0.7644	0.7178	0.8011	T	ANC	misc	39282
rs3750848	23577725	Naj AC	Age-related macular degeneration (extreme sampling)	miscellaneous_diseases	"720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls"	EUR	10q26.13	10	122455799	3.12	G	3.00E-29	T	G	0.2466	0.2478	0.4038	0.1948	0.3425	0.2871	T	DER	misc	1239
rs3762318	22019778	Zhang F	Leprosy	miscellaneous_diseases	"706 Han Chinese ancestry cases, 5,581 Han Chinese ancestry controls"	EAS	1p31.3	1	67131436	1.45	A	3.00E-11	G	A	0.7753	0.8372	0.9038	0.8101	0.9438	0.85404	A	ANC	misc	6287
rs3764147	20018961	Zhang FR	Leprosy	miscellaneous_diseases	"706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls"	EAS	13q14.11	13	43883789	1.68	G	4.00E-54	A	G	0.3048	0.3646	0.3472	0.2266	0.3047	0.30958	A	DER	misc	1931
rs3764261	21665990	Yu Y	Age-related macular degeneration	miscellaneous_diseases	"2,594 European ancestry cases, 4,134 European ancestry controls"	EUR	16q13	16	56959412	1.15	A	7.00E-09	C	A	0.3404	0.3112	0.1746	0.2922	0.3211	0.2879	C	DER	misc	6728
rs3769955	25344690	Feenstra B	Febrile seizures (MMR vaccine-related)	miscellaneous_diseases	"929 European ancestry cases, 4,118 European ancestry controls"	EUR	2q24.3	2	165378122	1.22	T	4.00E-06	C	T	0.3964	0.4553	0.5149	0.4284	0.3262	0.42424	T	ANC	misc	5047
rs3769955	25344690	Feenstra B	Febrile seizures (MMR vaccine-unrelated)	miscellaneous_diseases	"1,070 European ancestry cases, 4,118 European ancestry controls"	EUR	2q24.3	2	165378122	1.22	T	2.00E-07	C	T	0.3964	0.4553	0.5149	0.4284	0.3262	0.42424	T	ANC	misc	5188
rs3769955	25344690	Feenstra B	Febrile seizures	miscellaneous_diseases	"929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls"	EUR	2q24.3	2	165378122	1.22	T	3.00E-10	C	T	0.3964	0.4553	0.5149	0.4284	0.3262	0.42424	T	ANC	misc	6117
rs3771166	20860503	Moffatt MF	Asthma	miscellaneous_diseases	"10,365 cases, 16,110 controls"	EUR	2q12.1	2	102369762	1.15	G	3.00E-09	G	A	0.329	0.7262	0.875	0.5974	0.7945	0.66442	A	DER	misc	26475
rs3785176	25173107	Chen Y	Glaucoma (high intraocular pressure)	miscellaneous_diseases	"966 Han Chinese ancestry cases, 1,005 Han Chinese ancestry controls"	EAS	16p13.2	16	8803074	1.28	C	2.00E-07	A	C	0.0961	0.1354	0.2788	0.2515	0.1299	0.17834	A	DER	misc	1971
rs3793917	20385819	Chen W	Age-related macular degeneration	miscellaneous_diseases	"2,157 European ancestry cases, 1,150 European ancestry controls"	EUR	10q26.13	10	122459759	3.4	G	4.00E-60	C	G	0.2504	0.2493	0.4127	0.1958	0.3374	0.28912	C	DER	misc	3307
rs3802457	22885925	Shi Y	Polycystic ovary syndrome	miscellaneous_diseases	"2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls"	EAS	9q22.32	9	94979054	1.3	G	5.00E-14	G	A	0.7239	0.9697	0.8849	0.9851	0.9417	0.90106	G	ANC	misc	5255
rs3803800	22197929	Yu XQ	IgA nephropathy	miscellaneous_diseases	"1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls"	EAS	17p13.1	17	7559652	1.21	A	9.00E-11	A	G	0.7337	0.415	0.3502	0.2326	0.3681	0.41992	A	ANC	misc	5704
rs3805236	21804548	Hirota T	Asthma	miscellaneous_diseases	"1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls"	EAS	4q31.21	4	143436584	1.12	G	7.00E-08	A	G	0.9879	0.5994	0.2827	0.662	0.7209	0.65058	G	ANC	misc	4836
rs38055	24927181	Navarini AA	Acne (severe)	miscellaneous_diseases	"1,893 European ancestry cases, 5,132 European ancestry controls"	EUR	5q11.2	5	53264814	1.18	A	5.00E-09	A	G	0.0613	0.2954	0.2649	0.3052	0.3139	0.24814	G	DER	misc	7025
rs3812111	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	6q22.1	6	116122572	1.1	T	2.00E-08	T	A	0.264	0.6671	0.7421	0.6044	0.6227	0.58006	A	DER	misc	59494
rs3812762	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	11p15.4	11	8730093	1.1965	G	1.00E-06	G	C	0.879	0.6571	0.747	0.659	0.6595	0.72032	G	ANC	misc	6492
rs3815087	21801394	Genin E	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	miscellaneous_diseases	"424 European ancestry cases, 1,881 European ancestry controls"	EUR	6p21.33	6	31125810	1.53	A	3.00E-07	G	A	0.3593	0.2305	0.2609	0.2187	0.3599	0.28586	A	ANC	misc	2305
rs3816183	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	2p21	2	42788579	1.58	T	4.00E-34	T	C	0.1089	0.1066	0.1974	0.2366	0.0491	0.13972	C	DER	misc	6492
rs3825942	17690259	Thorleifsson G	Glaucoma (exfoliation)	miscellaneous_diseases	"75 European ancestry cases, 14,474 European ancestry controls"	EUR	15q24.1	15	73927241	20.1	G	3.00E-21	G	A	0.59	0.8314	0.8601	0.8231	0.7321	0.76734	G	ANC	misc	14549
rs383592	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	8q21.3	8	89792100	1.32	C	2.00E-35	C	T	0.2844	0.5519	0.5099	0.4225	0.5726	0.46826	C	ANC	misc	8060
rs3853601	22197932	Paternoster L	Atopic dermatitis	miscellaneous_diseases	"5,606 European ancestry cases, 20,565 European ancestry controls"	EUR	6p21.33	6	31531826	1.13	G	2.00E-06	C	G	0.1906	0.0865	0.0179	0.1362	0.0317	0.09258	C	DER	misc	26171
rs3894194	20860503	Moffatt MF	Asthma	miscellaneous_diseases	"10,365 cases, 16,110 controls"	EUR	17q21.1	17	39965740	1.17	A	5.00E-09	G	A	0.2587	0.5043	0.5397	0.4463	0.4836	0.44652	G	DER	misc	26475
rs389884	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.33	6	31973120	3.65	G	8.00E-66	A	G	0.0318	0.0216	0	0.0736	0	0.0254	A	DER	misc	2894
rs40363	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	16p13.3	16	3459056	11.1111	G	3.00E-06	G	A	0.8086	0.8329	0.8254	0.7883	0.772	0.80544	G	ANC	misc	733
rs40457	20018961	Zhang FR	Leprosy	miscellaneous_diseases	"706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls"	EAS	8q21.3	8	89811459	1.3	A	1.00E-12	A	G	0.2368	0.549	0.6974	0.4135	0.6677	0.51288	A	ANC	misc	1931
rs404860	21804548	Hirota T	Asthma	miscellaneous_diseases	"1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls"	EAS	6p21.32	6	32216568	1.21	T	4.00E-23	T	C	0.708	0.8112	0.5704	0.8419	0.8047	0.74724	T	ANC	misc	4836
rs4077515	25305756	Kiryluk K	IgA nephropathy	miscellaneous_diseases	"1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls"	EAS	9q34.3	9	136372044	1.16	T	1.00E-09	C	T	0.2519	0.5706	0.3214	0.3966	0.3926	0.38662	C	DER	misc	6699
rs4129267	21907864	Ferreira MA	Asthma	miscellaneous_diseases	"12,475 European ancestry cases, 19,967 European ancestry controls"	EUR	1q21.3	1	154453788	1.09	T	2.00E-08	C	T	0.09	0.536	0.3224	0.3598	0.2996	0.32156	C	DER	misc	32442
rs417096	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	6p21.2	6	39760057	1.43	G	7.00E-25	G	A	0.6921	0.4726	0.7371	0.3429	0.6145	0.57184	A	DER	misc	6492
rs4227	22197929	Yu XQ	IgA nephropathy	miscellaneous_diseases	"1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls"	EAS	17p13.1	17	7587859	1.23	G	4.00E-10	G	T	0.472	0.4323	0.2391	0.2724	0.1575	0.31466	T	DER	misc	5704
rs4236601	20835238	Thorleifsson G	Glaucoma (primary open-angle)	miscellaneous_diseases	"1,263 European ancestry cases, 34,887 European ancestry controls"	EUR	7q31.2	7	116522675	1.27	A	2.00E-11	G	A	0.3994	0.2089	0.0099	0.2594	0.1922	0.21396	G	DER	misc	36150
rs42490	20018961	Zhang FR	Leprosy	miscellaneous_diseases	"706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls"	EAS	8q21.3	8	89766285	1.32	G	1.00E-16	G	A	0.2837	0.5403	0.5099	0.3887	0.5634	0.4572	G	ANC	misc	1931
rs428445	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	20q13.31	20	56461491	1.314	A	2.00E-06	C	A	0.7307	0.6729	0.9256	0.5477	0.683	0.71198	A	ANC	misc	48020
rs429608	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	6p21.33	6	31962685	1.74	G	4.00E-89	G	A	0.8071	0.8847	0.9196	0.8519	0.7904	0.85074	G	ANC	misc	59494
rs4331426	20694014	Thye T	Tuberculosis	miscellaneous_diseases	"2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls"	AFR	18q11.2	18	22610832	1.19	G	7.00E-09	G	A	0.4864	0.0706	0.0278	0.0427	0.0879	0.14308	A	DER	misc	5359
rs4366152	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	9q32	9	114802595	1.3333333	T	9.00E-42	T	C	0.087	0.2723	0.4871	0.3221	0.2454	0.28278	C	DER	misc	8060
rs4416442	24621683	Cho MH	Chronic obstructive pulmonary disease (severe)	miscellaneous_diseases	"3,145 European ancestry cases, 3,955 European ancestry controls, 352 African American cases, 1,749 African American controls"	EUR	4q22.1	4	88945562	1.36	C	9.00E-15	T	C	0.5401	0.4092	0.5427	0.3996	0.3896	0.45624	T	DER	misc	9201
rs4416442	24621683	Cho MH	Chronic obstructive pulmonary disease (moderate to severe)	miscellaneous_diseases	"5,812 European ancestry cases, 3,955 European ancestry controls, 821 African American cases, 1,749 African American controls"	EUR	4q22.1	4	88945562	1.28	C	1.00E-14	T	C	0.5401	0.4092	0.5427	0.3996	0.3896	0.45624	T	DER	misc	12337
rs4420638	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	19q13.32	19	44919689	1.3	A	2.00E-20	A	G	0.7799	0.9049	0.9008	0.8022	0.8978	0.85712	G	DER	misc	59494
rs442309	25108386	Hou S	Vogt-Koyanagi-Harada syndrome	miscellaneous_diseases	"774 Han Chinese ancestry cases, 2,009 Han Chinese ancestry controls"	EAS	10q21.2	10	62730735	1.37	T	3.00E-11	C	T	0.5098	0.4452	0.2708	0.5199	0.6513	0.4794	C	DER	misc	2783
rs451390	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	21q22.3	21	41923401	4.5455	G	2.00E-07	G	C	0.7292	0.9625	1	0.9861	0.9131	0.91818	C	DER	misc	733
rs4563609	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	5q33.3	5	158490267	1.2	A	3.00E-07	G	A	0.9372	0.7867	0.7222	0.673	0.6319	0.7502	A	ANC	misc	6492
rs4619890	25173105	Gharahkhani P	Glaucoma (primary open-angle)	miscellaneous_diseases	"1,155 European ancestry cases, 1,922 European ancestry controls"	EUR	4p16.1	4	7851433	1.2	G	7.00E-10	G	A	0.8585	0.5965	0.7044	0.4662	0.6186	0.64884	G	ANC	misc	3077
rs4634985	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	10p12.31	10	20145851	1.54	T	3.00E-06	T	C	0.8169	0.2954	0.4851	0.2247	0.4223	0.44888	C	DER	misc	1726
rs4656461	21532571	Burdon KP	Glaucoma	miscellaneous_diseases	"590 European ancestry cases, 3,956 European ancestry controls"	EUR	1q24.1	1	165717968	1.51	G	6.00E-14	G	A	0.2564	0.1354	0.0089	0.1412	0.0429	0.11696	G	ANC	misc	4546
rs4664308	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	2q24.2	2	160060986	2.28	A	9.00E-29	A	G	0.9675	0.7738	0.6548	0.5855	0.8323	0.76278	A	ANC	misc	2894
rs4671386	24927181	Navarini AA	Acne (severe)	miscellaneous_diseases	"1,893 European ancestry cases, 5,132 European ancestry controls"	EUR	2p16.1	2	60287858	1.19	C	2.00E-06	C	A	0.2383	0.3285	0.3571	0.4324	0.4693	0.36512	A	DER	misc	7025
rs4673659	24824216	Myers RA	Asthma (sex interaction)	miscellaneous_diseases	"1,052 European ancestry male cases, 1,019 European ancestry female cases, 709 European ancestry male controls, 826 European ancestry female controls, 675 African American/African Caribbean male cases, 837 African American/African Caribbean female cases, 577 African American/African Caribbean male controls, 926 African American/African Caribbean female controls, 926 Latino male cases, 710 Latino female cases, 410 Latino male controls, 382 Latino female controls"	MIX	2q34	2	212325005	1.42	C	9.00E-07	A	C	0.525	0.6643	0.7659	0.7714	0.6227	0.66986	A	DER	misc	9049
rs4698775	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	4q25	4	109669323	1.14	G	7.00E-11	G	T	0.0219	0.2968	0.1944	0.3052	0.3487	0.2334	T	DER	misc	59494
rs4704397	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	5q13.3	5	77222617	1.174	A	2.00E-06	G	A	0.8722	0.5937	0.8244	0.4046	0.6002	0.65902	A	ANC	misc	39282
rs4711751	21665990	Yu Y	Age-related macular degeneration	miscellaneous_diseases	"2,594 European ancestry cases, 4,134 European ancestry controls"	EUR	6p21.1	6	43860845	1.15	T	9.00E-09	T	C	0.9198	0.5245	0.7361	0.5129	0.6697	0.6726	T	ANC	misc	6728
rs4714888	23326517	Holliday EG	Age-related macular degeneration	miscellaneous_diseases	"3,772 European ancestry cases, 16,033 European ancestry controls"	EUR	6p21.1	6	45917324	1.3	T	8.00E-06	G	T	0.2156	0.072	0.0992	0.0517	0.136	0.1149	G	DER	misc	19805
rs4722404	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	7p22.2	7	3089155	1.18	C	8.00E-09	T	C	0.2269	0.5548	0.3552	0.4801	0.41	0.4054	T	DER	misc	9443
rs4727443	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	7q22.1	7	99995723	1.3	C	1.00E-08	C	A	0.8865	0.5159	0.3552	0.5984	0.6196	0.59512	C	ANC	misc	5844
rs476141	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	1q44	1	244013122	1.37	T	1.00E-07	G	T	0.1747	0.4409	0.2103	0.4583	0.5215	0.36114	G	DER	misc	2829
rs4767234	22837378	Wilk JB	Airflow obstruction	miscellaneous_diseases	"up to 3,368 European ancestry cases, up to 29,507 European ancestry controls"	EUR	12q24.21	12	114200043	1.17	A	6.00E-07	A	C	0.5507	0.4683	0.8958	0.5696	0.5798	0.61284	A	ANC	misc	32875
rs478304	24927181	Navarini AA	Acne (severe)	miscellaneous_diseases	"1,893 European ancestry cases, 5,132 European ancestry controls"	EUR	11q13.1	11	65726789	1.2	T	3.00E-11	G	T	0.5961	0.67	0.5308	0.5338	0.2699	0.52012	T	ANC	misc	7025
rs4784165	22885925	Shi Y	Polycystic ovary syndrome	miscellaneous_diseases	"2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls"	EAS	16q12.1	16	52313907	1.15	G	4.00E-11	T	G	0.4349	0.33	0.3591	0.2604	0.274	0.33168	T	DER	misc	5255
rs4787008	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	16p13.3	16	7365551	1.47	G	6.00E-07	A	G	0.9887	0.8775	0.999	0.8072	0.9243	0.91934	G	ANC	misc	2829
rs479844	22197932	Paternoster L	Atopic dermatitis	miscellaneous_diseases	"5,606 European ancestry cases, 20,565 European ancestry controls"	EUR	11q13.1	11	65784486	1.14	G	1.00E-13	A	G	0.1657	0.3314	0.2679	0.5567	0.5389	0.37212	G	ANC	misc	26171
rs4799964	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	18q12.1	18	30405513	1.267	G	1.00E-06	T	G	0.0166	0.0476	0.0933	0.0338	0.0593	0.05012	T	DER	misc	48020
rs4804416	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	19p13.2	19	7223837	1.125	G	5.00E-06	T	G	0.2216	0.4063	0.4028	0.4205	0.2771	0.34566	T	DER	misc	39282
rs4863687	25234806	Dijkstra AE	Chronic mucus hypersecretion	miscellaneous_diseases	"342 European ancestry cases, 1,006 European ancestry controls"	EUR	4q31.1	4	139757127	1.48	T	8.00E-06	C	T	0.1944	0.317	0.2292	0.2744	0.1943	0.24186	C	DER	misc	1348
rs4915077	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	1p13.3	1	107823394	1.302	C	8.00E-10	T	C	0.0408	0.1902	0.2917	0.0676	0.1227	0.1426	T	DER	misc	39282
rs493258	20385826	Neale BM	Age-related macular degeneration	miscellaneous_diseases	"979 cases, 1,709 controls"	EUR	15q21.3	15	58395681	1.16	C	2.00E-08	T	C	0.4349	0.5605	0.2708	0.5457	0.3292	0.42822	T	DER	misc	2688
rs4972593	24029427	Sandholm N	End-stage renal disease in Type 1 diabetics	miscellaneous_diseases	"258 European ancestry female cases, 935 European ancestry female controls, 387 European ancestry male cases, 655 European ancestry male controls"	EUR	2q31.1	2	173598126	1.81	A	4.00E-08	T	A	0.3487	0.1037	0.2143	0.1342	0.4029	0.24076	T	DER	misc	2235
rs4977756	21532571	Burdon KP	Glaucoma	miscellaneous_diseases	"590 European ancestry cases, 3,956 European ancestry controls"	EUR	9p21.3	9	22068653	1.39	A	1.00E-14	G	A	0.68	0.7925	0.7946	0.6004	0.726	0.7187	A	ANC	misc	4546
rs523096	22792221	Takamoto M	Glaucoma	miscellaneous_diseases	"286 Japanese ancestry cases, 557 Japanese ancestry controls"	EAS	9p21.3	9	22019130	2.13	A	5.00E-11	A	G	0.9849	0.7954	0.9038	0.5666	0.7035	0.79084	A	ANC	misc	843
rs538147	22019778	Zhang F	Leprosy	miscellaneous_diseases	"706 Han Chinese ancestry cases, 5,581 Han Chinese ancestry controls"	EAS	11q13.1	11	64362250	1.17	A	7.00E-06	G	A	0.0484	0.3804	0.2073	0.3718	0.3548	0.27254	G	DER	misc	6287
rs541862	22694956	Cipriani V	Age-related macular degeneration	miscellaneous_diseases	"893 European ancestry cases, 2,199 European ancestry controls"	EUR	6p21.33	6	31949174	1.89	T	9.00E-17	T	C	0.8207	0.9107	0.9415	0.9115	0.8528	0.88744	C	DER	misc	3092
rs542340	25027321	Hoffmann TJ	Glaucoma	miscellaneous_diseases	"658 African American prevalent cases, 1,062 African American incident cases, 6,067 African American controls, 153 Hispanic prevalent cases, 336 Hispanic incident cases, 2,685 Hispanic controls"	MIX	11p13	11	31387891	1.95	G	8.00E-09	A	G	0.0257	0.0043	0	0	0	0.006	A	DER	misc	10961
rs555091	25027321	Hoffmann TJ	Glaucoma	miscellaneous_diseases	"658 African American prevalent cases, 1,062 African American incident cases, 6,067 African American controls, 153 Hispanic prevalent cases, 336 Hispanic incident cases, 2,685 Hispanic controls"	MIX	11p13	11	31511412	1.92	C	2.00E-08	T	C	0.025	0.0043	0	0	0	0.00586	T	DER	misc	10961
rs556493	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	6q24.3	6	147228161	1.3514	A	1.00E-06	A	G	0.2564	0.5533	0.3046	0.505	0.4693	0.41772	A	ANC	misc	1726
rs55716084	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	1q43	1	243127340	1.59	A	3.00E-06	G	A	0.3298	0.1196	0.1964	0.0139	0.0521	0.14236	G	DER	misc	1726
rs5743890	24429156	Noth I	Idiopathic pulmonary fibrosis	miscellaneous_diseases	"542 European ancestry cases, 542 European ancestry controls"	EUR	11p15.5	11	1304599	1.64	T	3.00E-11	T	C	0.9939	0.9121	1	0.8579	0.9714	0.94706	T	ANC	misc	1084
rs5743894	24429156	Noth I	Idiopathic pulmonary fibrosis	miscellaneous_diseases	"542 European ancestry cases, 542 European ancestry controls"	EUR	"11p15.5, 11p15.5[rs5743894]; 11p15.5[rs111521887]"	11	1303542	1.49	C	1.00E-12	T	C	0.0083	0.072	0.0119	0.1899	0.1125	0.07892	T	DER	misc	1084
rs577948	19779542	Nakanishi H	Myopia (pathological)	miscellaneous_diseases	"297 Japanese ancestry cases, 934 Japanese ancestry controls"	EAS	11q24.1	11	122159482	1.37	G	2.00E-07	A	G	0.1679	0.366	0.5169	0.3976	0.4151	0.3727	A	DER	misc	1231
rs58600253	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	10q21.2	10	62748144	1.22	T	3.00E-12	C	T	0.0499	0.0274	0.1954	0.0636	0.0726	0.08178	C	DER	misc	8060
rs586716	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	9p21.3	9	22488679	4.7619	G	8.00E-06	G	A	0.1036	0.4308	0.2321	0.5616	0.4305	0.35172	A	DER	misc	733
rs593982	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	11q13.1	11	65745636	1.23	C	6.00E-07	T	C	0.6936	0.5836	0.6052	0.8827	0.6145	0.67592	C	ANC	misc	9443
rs6022786	22885925	Shi Y	Polycystic ovary syndrome	miscellaneous_diseases	"2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls"	EAS	20q13.2	20	53830764	1.13	A	2.00E-09	A	G	0.5719	0.3386	0.4077	0.4056	0.4397	0.4327	A	ANC	misc	5255
rs613872	20825314	Baratz KH	Fuchs's corneal dystrophy	miscellaneous_diseases	"130 European ancestry cases, 260 European ancestry controls"	EUR	18q21.2	18	55543071	5.47	G	1.00E-18	G	T	0.0053	0.0836	0.004	0.1769	0.1043	0.07482	T	DER	misc	390
rs623011	22399142	Jongjaroenprasert W	Thyrotoxic hypokalemic periodic paralysis	miscellaneous_diseases	"78 Thai ancestry cases, 74 Thai ancestry controls"	EAS	17q24.3	17	70263305	5.47	A	4.00E-12	A	G	0.295	0.3084	0.4544	0.2773	0.1656	0.30014	G	DER	misc	152
rs62468577	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	7q21.11	7	78523355	1.5385	C	6.00E-06	C	T	0.8343	0.9265	0.9325	0.8429	0.8978	0.8868	C	ANC	misc	1726
rs6432860	25344690	Feenstra B	Febrile seizures (MMR vaccine-unrelated)	miscellaneous_diseases	"1,070 European ancestry cases, 4,118 European ancestry controls"	EUR	2q24.3	2	166041354	1.29	G	2.00E-09	A	G	0.848	0.7594	0.8909	0.6909	0.726	0.78304	G	ANC	misc	5188
rs6432860	25344690	Feenstra B	Febrile seizures	miscellaneous_diseases	"929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls"	EUR	2q24.3	2	166041354	1.34	G	2.00E-16	A	G	0.848	0.7594	0.8909	0.6909	0.726	0.78304	G	ANC	misc	6117
rs6469937	23933737	Khor CC	Myopia (severe)	miscellaneous_diseases	"1,603 East Asian ancestry cases, 3,427 East Asian ancestry controls"	EAS	8q24.12	8	120598198	1.27	A	2.00E-09	G	A	0.1657	0.415	0.2391	0.6372	0.411	0.3736	G	DER	misc	5030
rs6478108	20018961	Zhang FR	Leprosy	miscellaneous_diseases	"706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls"	EAS	9q32	9	114796423	1.37	T	3.00E-21	C	T	0.8941	0.7219	0.505	0.664	0.7372	0.70444	T	ANC	misc	1931
rs6480975	23326517	Holliday EG	Age-related macular degeneration	miscellaneous_diseases	"3,772 European ancestry cases, 16,033 European ancestry controls"	EUR	10q21.1	10	52815236	1.21	C	2.00E-06	G	C	0.6354	0.7666	0.881	0.8569	0.7485	0.77768	C	ANC	misc	19805
rs6496044	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	15q25.3	15	85524075	1.25	G	2.00E-06	G	A	0.357	0.3818	0.496	0.2942	0.3742	0.38064	A	DER	misc	5844
rs6499755	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	16q12.2	16	55307223	1.22	C	1.00E-08	T	C	0.1838	0.3314	0.3681	0.3171	0.3712	0.31432	T	DER	misc	6492
rs6503319	19465909	Jallow M	Malaria	miscellaneous_diseases	"958 Gambian ancestry cases, 1,382 Gambian ancestry controls"	AFR	17p13.1	17	10670842	1.21	T	7.00E-07	C	T	0.4834	0.1902	0.372	0.2793	0.3456	0.3341	T	ANC	misc	2340
rs6503525	21150878	Ferreira MA	Asthma	miscellaneous_diseases	"986 European ancestry cases, 1,846 European ancestry controls"	EUR	"17q12, 17q21.1"	17	39938921	1.33	C	5.00E-07	G	C	0.4213	0.5447	0.5446	0.4503	0.4939	0.49096	G	DER	misc	2832
rs650950	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	11p13	11	35517721	1.55	C	2.00E-06	T	C	0.8177	0.6499	0.9742	0.5268	0.7434	0.7424	C	ANC	misc	1726
rs652888	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.33	6	31883457	2.71	G	3.00E-46	A	G	0.2443	0.1052	0.253	0.2008	0.2249	0.20564	G	ANC	misc	2894
rs6538140	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	12q21.2	12	77344225	4.3478	G	4.00E-06	G	A	0.2988	0.3256	0.4772	0.4085	0.3814	0.3783	G	ANC	misc	733
rs655167	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	1q31.1	1	187933850	1.259	A	7.00E-06	A	G	0.4667	0.1254	0	0.1133	0.0951	0.1601	A	ANC	misc	39282
rs6575836	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	14q32.31	14	101212918	4	G	8.00E-06	G	A	0.1074	0.2392	0.4563	0.2217	0.227	0.25032	A	DER	misc	733
rs6577641	24714607	Dijkstra AE	Chronic mucus hypersecretion	miscellaneous_diseases	"717 European ancestry cases, 2,385 European ancestry controls"	EUR	3p24.3	3	18356357	1.17	C	4.00E-06	C	T	0.1392	0.2435	0.0942	0.3638	0.3415	0.23644	T	DER	misc	3102
rs6603109	22445761	Kurose K	Sexual dysfunction (SSRI/SNRI-related)	miscellaneous_diseases	201 Japanese ancestry individuals	EAS	19p13.2	19	7359642	5.13	A	2.00E-06	A	T	0.6346	0.9683	0.999	0.995	0.9652	0.91242	A	ANC	misc	201
rs660895	22197929	Yu XQ	IgA nephropathy	miscellaneous_diseases	"1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls"	EAS	6p21.32	6	32609603	1.34	G	4.00E-20	A	G	0.1346	0.2925	0.2401	0.2177	0.1554	0.20806	A	DER	misc	5704
rs663743	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	11q13.1	11	64340263	1.24	A	9.00E-14	G	A	0.025	0.3631	0.1558	0.336	0.2178	0.21954	G	DER	misc	8060
rs6676375	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	1q43	1	242711583	3.0303	T	8.00E-07	T	C	0.8737	0.7579	0.8839	0.8539	0.7975	0.83338	T	ANC	misc	733
rs6677604	25305756	Kiryluk K	IgA nephropathy	miscellaneous_diseases	"1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls"	EAS	1q31.3	1	196717788	1.35	G	5.00E-14	G	A	0.6112	0.8271	0.9524	0.8131	0.6431	0.76938	G	ANC	misc	6699
rs6679677	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	1p13.2	1	113761186	1.361	A	3.00E-13	C	A	0.0023	0.0303	0	0.0915	0.0133	0.02748	C	DER	misc	39282
rs6684428	22837378	Wilk JB	Airflow obstruction	miscellaneous_diseases	"up to 3,368 European ancestry cases, up to 29,507 European ancestry controls"	EUR	1p32.2	1	55894140	1.23	A	5.00E-07	T	A	0.1755	0.2133	0.0496	0.161	0.2546	0.1708	T	DER	misc	32875
rs6688613	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	1q24.1	1	166982632	1.309	T	3.00E-06	C	T	0.3669	0.1513	0.247	0.2247	0.182	0.23438	T	ANC	misc	48020
rs6702784	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	1p34.3	1	36439119	1.08	C	4.00E-06	A	C	0.0083	0.0432	0	0.0626	0.0092	0.02466	A	DER	misc	2829
rs6721654	23326517	Holliday EG	Age-related macular degeneration	miscellaneous_diseases	"3,772 European ancestry cases, 16,033 European ancestry controls"	EUR	2q14.2	2	120544335	1.26	T	7.00E-06	C	T	0.3116	0.0735	0.2411	0.0795	0.2321	0.18756	C	DER	misc	19805
rs6793295	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	3q26.2	3	169800667	1.3	C	8.00E-13	T	C	0.3956	0.4265	0.6835	0.2654	0.3425	0.4227	C	ANC	misc	5844
rs6795735	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	3p14.1	3	64719689	1.1	T	5.00E-09	C	T	0.8661	0.7133	0.748	0.4354	0.7566	0.70388	T	ANC	misc	59494
rs6863015	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	5q33.3	5	159416227	1.25	C	2.00E-21	C	A	0.6604	0.5735	0.5685	0.6571	0.6329	0.61848	C	ANC	misc	8060
rs6871536	24241537	Bonnelykke K	Asthma (childhood onset)	miscellaneous_diseases	"1,173 European ancestry cases, 2,511 European ancestry controls"	EUR	5q31.1	5	132634182	1.17	C	8.00E-07	T	C	0.3321	0.147	0.1875	0.1909	0.227	0.2169	T	DER	misc	3684
rs6885224	21095009	Li YJ	Myopia (pathological)	miscellaneous_diseases	"65 Singaporean Chinese child cases, 238 Singaporean Chinese child controls, 222 Singaporean Chinese adult cases, 455 Singaporean Chinese adult cases"	EAS	5p15.2	5	11169833	1.24	C	8.00E-06	C	T	0.18	0.5591	0.2391	0.4602	0.5675	0.40118	C	ANC	misc	980
rs6892230	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	5q12.3	5	65843936	1.236	A	2.00E-06	G	A	0.121	0.0418	0	0.0338	0.0787	0.05506	G	DER	misc	48020
rs6967330	24241537	Bonnelykke K	Asthma (childhood onset)	miscellaneous_diseases	"1,173 European ancestry cases, 2,511 European ancestry controls"	EUR	7q22.3	7	106018005	1.26	A	3.00E-14	G	A	0.2648	0.1427	0.0704	0.2078	0.2004	0.17722	A	ANC	misc	3684
rs7000782	22197932	Paternoster L	Atopic dermatitis	miscellaneous_diseases	"5,606 European ancestry cases, 20,565 European ancestry controls"	EUR	8q21.13	8	80395915	1.09	A	1.00E-06	T	A	0.7905	0.5836	0.6458	0.4364	0.5706	0.60538	A	ANC	misc	26171
rs705702	22885925	Shi Y	Polycystic ovary syndrome	miscellaneous_diseases	"2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls"	EAS	12q13.2	12	55996852	1.27	G	9.00E-26	A	G	0.0492	0.2291	0.2242	0.3221	0.1994	0.2048	A	DER	misc	5255
rs7078160	20023658	Mangold E	Orofacial clefts	miscellaneous_diseases	"399 European ancestry cases, 1,318 European ancestry controls"	EUR	10q25.3	10	117068049	1.36	A	2.00E-08	G	A	0.2511	0.2133	0.4127	0.175	0.1247	0.23536	G	DER	misc	1717
rs7130588	21907864	Ferreira MA	Asthma	miscellaneous_diseases	"12,475 European ancestry cases, 19,967 European ancestry controls"	EUR	11q13.5	11	76559639	1.09	G	2.00E-08	A	G	0.1808	0.2089	0.1151	0.3499	0.2321	0.21736	A	DER	misc	32442
rs7144383	24429156	Noth I	Idiopathic pulmonary fibrosis	miscellaneous_diseases	"542 European ancestry cases, 542 European ancestry controls"	EUR	14q21.3	14	47571172	1.44	G	4.00E-06	G	A	0.0023	0.0591	0	0.1153	0.0317	0.04168	A	DER	misc	1084
rs7152530	24847357	Ye Z	Staphylococcus aureus infection	miscellaneous_diseases	"309 European ancestry cases, 2,925 European ancestry controls"	EUR	14q32.2	14	98174878	1.61	G	8.00E-07	G	A	0.6135	0.732	0.7976	0.6531	0.7382	0.70688	A	DER	misc	3234
rs71627250	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	5q12.1	5	63088872	1.65	T	6.00E-06	C	T	0.0764	0.072	0.1736	0.0447	0.0429	0.08192	C	DER	misc	1726
rs7192	22541561	Zhao H	Non-obstructive azoospermia	miscellaneous_diseases	"802 Han Chinese ancestry cases, 1,863 Han Chinese ancestry controls"	EAS	6p21.32	6	32443869	1.29	T	3.00E-06	T	G	0.4002	0.3098	0.3135	0.3668	0.2822	0.3345	G	DER	misc	2665
rs7216389	17611496	Moffatt MF	Asthma	miscellaneous_diseases	"994 European ancestry cases, 1,243 European ancestry controls"	EUR	"17q12, 17q21.1"	17	39913696	1.45	T	9.00E-11	C	T	0.823	0.6282	0.7113	0.4841	0.6309	0.6555	T	ANC	misc	2237
rs72791417	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	10q21.3	10	65983896	1.4493	A	1.00E-06	A	T	0.9811	0.7954	0.8433	0.9006	0.7556	0.8552	A	ANC	misc	1726
rs73058713	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	5p14.3	5	20374104	1.19	A	1.00E-08	C	A	0.292	0.1873	0.1329	0.0447	0.2004	0.17146	C	DER	misc	8060
rs734553	21983786	Sulem P	Gout	miscellaneous_diseases	"968 European ancestry cases, 40,000 European ancestry controls"	EUR	4p16.1	4	9921380	1.39	T	2.00E-07	G	T	0.4274	0.5865	0.9831	0.7555	0.773	0.7051	T	ANC	misc	40968
rs735860	20363506	Meguro A	Glaucoma	miscellaneous_diseases	"305 Japanese ancestry cases, 355 Japanese ancestry controls"	EAS	6p12.1	6	53258320	1.69	C	4.00E-06	T	C	0.9796	0.6556	0.5208	0.5596	0.6084	0.6648	C	ANC	misc	660
rs744910	20860503	Moffatt MF	Asthma	miscellaneous_diseases	"10,365 cases, 16,110 controls"	EUR	15q22.33	15	67154447	1.12	G	4.00E-09	G	A	0.6906	0.5317	0.5952	0.4801	0.5123	0.56198	A	DER	misc	26475
rs747650	24399259	He L	Acne (severe)	miscellaneous_diseases	"1,031 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls"	EAS	11p11.2	11	47154454	1.24	C	4.00E-09	C	T	0.7179	0.611	0.2808	0.6759	0.7076	0.59864	C	ANC	misc	2062
rs7524102	21732829	Dolmans GH	Dupuytren's disease	miscellaneous_diseases	"856 European ancestry cases, 2,836 European ancestry controls"	EUR	1p36.12	1	22371954	1.28	G	3.00E-09	A	G	0.3366	0.1398	0.2351	0.165	0.2127	0.21784	G	ANC	misc	3692
rs7531806	24399259	He L	Acne (severe)	miscellaneous_diseases	"1,031 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls"	EAS	1q24.2	1	169681903	1.22	A	1.00E-08	G	A	0.7769	0.4467	0.4296	0.5686	0.5143	0.54722	G	DER	misc	2062
rs7534824	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	1p21.2	1	101155890	2.304	A	9.00E-07	A	G	0.9871	0.964	0.9623	0.8936	0.9826	0.95792	A	ANC	misc	48020
rs75430906	24927181	Navarini AA	Acne (severe)	miscellaneous_diseases	"1,893 European ancestry cases, 5,132 European ancestry controls"	EUR	3p24.3	3	20676437	3.46	A	1.00E-07	G	A	0.0575	0.0101	0.0506	0.001	0.0501	0.03386	G	DER	misc	7025
rs7588567	22419738	Osman W	Glaucoma (primary open-angle)	miscellaneous_diseases	"1,394 Japanese ancestry cases, 6,599 Japanese ancestry controls"	EAS	2q21.2	2	133605461	1.18	C	4.00E-07	T	C	0.4145	0.4683	0.6468	0.3817	0.4407	0.4704	T	DER	misc	7993
rs7590268	20023658	Mangold E	Orofacial clefts	miscellaneous_diseases	"399 European ancestry cases, 1,318 European ancestry controls"	EUR	2p21	2	43312986	1.42	G	9.00E-08	T	G	0.1959	0.1311	0.0268	0.2495	0.1871	0.15808	T	DER	misc	1717
rs7607316	22837378	Wilk JB	Airflow obstruction	miscellaneous_diseases	"up to 3,368 European ancestry cases, up to 29,507 European ancestry controls"	EUR	2q37.3	2	236613199	1.29	A	3.00E-06	C	A	0.6762	0.1571	0.1508	0.2266	0.2832	0.29878	A	ANC	misc	32875
rs7613051	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	3p22.3	3	33023847	1.29	A	6.00E-21	G	A	0.2973	0.1671	0.4782	0.2117	0.3211	0.29508	A	ANC	misc	9443
rs7629245	22837378	Wilk JB	Airflow obstruction	miscellaneous_diseases	"up to 3,368 European ancestry cases, up to 29,507 European ancestry controls"	EUR	3q27.2	3	185424069	1.22	T	9.00E-06	C	T	0.0136	0.1369	0.2153	0.1581	0.2546	0.1557	C	DER	misc	32875
rs7660345	24399259	He L	Acne (severe)	miscellaneous_diseases	"1,031 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls"	EAS	4q35.2	4	187000345	1.19	T	3.00E-06	A	T	0.7663	0.4121	0.3591	0.2853	0.4407	0.4527	T	ANC	misc	2062
rs7674369	25101718	Lee JH	Chronic obstructive pulmonary disease	miscellaneous_diseases	"3,281 European ancestry cases, 494 African American cases, 2,712 European ancestry smoker controls, 1,749 African American smoker controls"	EUR	4q22.1	4	88951025	1.29	A	1.00E-10	G	A	0.6316	0.4135	0.5407	0.4026	0.3865	0.47498	G	DER	misc	8236
rs7677751	22144915	Fan Q	Corneal astigmatism	miscellaneous_diseases	"1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malay ancestry cases, 1,220 Malay ancestry controls"	MIX	4q12	4	54258293	1.26	T	8.00E-09	C	T	0.3162	0.2767	0.2163	0.1431	0.2536	0.24118	T	ANC	misc	4254
rs7686660	21804548	Hirota T	Asthma	miscellaneous_diseases	"1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls"	EAS	4q31.21	4	143082006	1.16	T	2.00E-12	T	G	0.5514	0.5807	0.2728	0.7584	0.6125	0.55516	G	DER	misc	4836
rs76886731	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	2q12.1	2	102328956	1.24	T	2.00E-23	A	T	0.4312	0.3559	0.5565	0.4911	0.4346	0.45386	A	DER	misc	8060
rs7705093	24957906	Kuiper JJ	Birdshot chorioretinopathy	miscellaneous_diseases	"117 European ancestry cases, 693 European ancestry  controls"	EUR	5q15	5	96954943	2.2	T	2.00E-09	C	T	0.3865	0.3184	0.3929	0.4175	0.455	0.39406	C	DER	misc	810
rs77061563	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	16p13.13	16	11358685	1.1904762	C	6.00E-15	C	T	0.9902	0.9885	0.6409	0.9682	0.7474	0.86704	C	ANC	misc	8060
rs7750345	23326517	Holliday EG	Age-related macular degeneration	miscellaneous_diseases	"3,772 European ancestry cases, 16,033 European ancestry controls"	EUR	6q21	6	105812253	1.16	A	7.00E-06	A	G	0.5129	0.7911	0.755	0.7227	0.7515	0.70664	A	ANC	misc	19805
rs7750641	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.33	6	31161533	3.35	T	3.00E-58	C	T	0.0091	0.0303	0	0.0855	0	0.02498	C	DER	misc	2894
rs7763262	25305756	Kiryluk K	IgA nephropathy	miscellaneous_diseases	"1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls"	EAS	6p21.32	6	32457105	1.41	C	2.00E-38	T	C	0.7262	0.804	0.7292	0.7197	0.7914	0.7541	C	ANC	misc	6699
rs7765379	25383971	Dunstan SJ	Enteric fever	miscellaneous_diseases	"432 Vietnamese ancestry cases, 2,011 Vietnamese ancestry controls"	EAS	6p21.32	6	32713151	4.55	T	2.00E-13	T	G	0.91	0.8703	0.9276	0.8688	0.9703	0.9094	T	ANC	misc	2443
rs7772697	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	6q25.1	6	149113975	1.35	T	3.00E-06	T	C	0.4554	0.7248	0.8155	0.5994	0.5532	0.62966	C	DER	misc	2829
rs7775228	21804548	Hirota T	Asthma	miscellaneous_diseases	"1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls"	EAS	6p21.32	6	32690302	1.17	T	5.00E-15	T	C	0.823	0.7896	0.7708	0.841	0.6933	0.78354	T	ANC	misc	4836
rs7775397	21323541	Stanescu HC	Idiopathic membranous nephropathy	miscellaneous_diseases	"556 European ancestry cases, 2,338 European ancestry controls"	EUR	6p21.32	6	32293475	3.83	G	5.00E-71	T	G	0.0038	0.0187	0	0.0785	0	0.0202	T	DER	misc	2894
rs7805747	20383146	Kottgen A	Chronic kidney disease	miscellaneous_diseases	"Up to 67,093 European ancestry individuals"	EUR	7q36.1	7	151710715	1.18	A	4.00E-12	G	A	0.3245	0.1729	0.003	0.2883	0.0706	0.17186	G	DER	misc	67093
rs7811653	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	7p12.3	7	46362671	1.57	A	2.00E-14	C	A	0.0061	0.072	0.0278	0.0835	0.1053	0.05894	C	DER	misc	6492
rs7815944	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	8q24.21	8	128415272	1.16	A	4.00E-07	A	G	0.7375	0.8242	0.7103	0.9592	0.8231	0.81086	A	ANC	misc	9443
rs7823467	25367360	Li Q	Refractive astigmatism	miscellaneous_diseases	"8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years"	MIX	8q12.1	8	59166175	1.085	T	3.00E-07	T	C	0.4175	0.3473	0.4673	0.5616	0.7434	0.50742	C	DER	misc	48020
rs7865618	22428042	Nakano M	Glaucoma (primary open-angle)	miscellaneous_diseases	"833 Japanese ancestry cases, 686 Japanese ancestry controls"	EAS	9p21.3	9	22031006	1.78	A	9.00E-11	G	A	0.9856	0.8084	0.9077	0.5746	0.7249	0.80024	A	ANC	misc	1519
rs78975256	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	5q23.1	5	120880342	2.439	C	4.00E-06	T	C	0.1936	0.0043	0	0.002	0	0.03998	T	DER	misc	1726
rs7913069	21460842	Cha PC	Uterine fibroids	miscellaneous_diseases	"1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls"	EAS	10q24.33	10	103954641	1.47	T	9.00E-14	C	T	0.1664	0.1167	0.0853	0.0378	0.0685	0.09494	T	ANC	misc	3035
rs7922491	21907864	Ferreira MA	Asthma	miscellaneous_diseases	"12,475 European ancestry cases, 19,967 European ancestry controls"	EUR	10q21.1	10	51733713	1.13	A	5.00E-07	G	A	0.0469	0.2277	0.1637	0.1064	0.0828	0.1255	G	DER	misc	32442
rs7927894	19349984	Esparza-Gordillo J	Atopic dermatitis	miscellaneous_diseases	"939 European ancestry cases, 975 European ancestry controls, 1,097 European ancestry individuals from 270 families"	EUR	11q13.5	11	76590272	1.22	T	8.00E-10	C	T	0.3472	0.2392	0.2143	0.3738	0.2996	0.29482	C	DER	misc	3281
rs7934606	23583980	Fingerlin TE	Interstitial lung disease	miscellaneous_diseases	"1,161 European ancestry cases, 4,683 European ancestry controls"	EUR	11p15.5	11	1100037	1.52	T	7.00E-34	T	C	0.0734	0.2205	0.0089	0.4056	0.2219	0.18606	C	DER	misc	5844
rs7947821	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	11q22.3	11	103076736	7.1429	T	2.00E-06	T	C	0.8616	0.9827	1	1	1	0.96886	T	ANC	misc	733
rs8002861	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	13q14.11	13	43900381	1.1111112	A	7.00E-06	G	A	0.6301	0.5778	0.6974	0.4751	0.6759	0.61126	A	ANC	misc	8060
rs8017304	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	14q24.1	14	68318360	1.11	A	9.00E-11	G	A	0.2973	0.621	0.4494	0.5775	0.6309	0.51522	G	DER	misc	59494
rs8031948	22837378	Wilk JB	Airflow obstruction	miscellaneous_diseases	"up to 3,368 European ancestry cases, up to 29,507 European ancestry controls"	EUR	15q25.1	15	78523715	1.22	T	3.00E-09	G	T	0.1513	0.2104	0.0268	0.3748	0.1933	0.19132	G	DER	misc	32875
rs8034191	19300482	Pillai SG	Chronic obstructive pulmonary disease	miscellaneous_diseases	"823 cases, 810 controls"	EUR	15q25.1	15	78513681	1.4	C	1.00E-10	T	C	0.1528	0.2147	0.0288	0.3748	0.1933	0.19288	T	DER	misc	1633
rs8042238	25241909	Lee JH	Chronic obstructive pulmonary disease	miscellaneous_diseases	"3,777 European ancestry cases, 3,520 European ancestry smoker controls"	EUR	15q25.1	15	78481929	1.26	T	5.00E-08	C	T	0.2421	0.4553	0.4633	0.6014	0.4703	0.44648	C	DER	misc	7297
rs8045253	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	16q24.1	16	86404161	1.19	C	6.00E-07	T	C	0.2708	0.2507	0.3571	0.3877	0.2209	0.29744	T	DER	misc	6492
rs8060598	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	16q12.1	16	50747891	1.14	C	5.00E-06	T	C	0.1959	0.4107	0.1399	0.4503	0.1881	0.27698	T	DER	misc	8060
rs8124695	21732829	Dolmans GH	Dupuytren's disease	miscellaneous_diseases	"856 European ancestry cases, 2,836 European ancestry controls"	EUR	20q12	20	40399796	1.48	A	8.00E-10	C	A	0.2716	0.1009	0.0119	0.0785	0.0971	0.112	A	ANC	misc	3692
rs857228	22445761	Kurose K	Sexual dysfunction (SSRI/SNRI-related)	miscellaneous_diseases	201 Japanese ancestry individuals	EAS	14q32.2	14	98203821	2.56	A	3.00E-06	A	C	0.3873	0.5115	0.1935	0.4225	0.3783	0.37862	C	DER	misc	201
rs878860	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	11p15.4	11	7946812	1.31	C	2.00E-22	C	T	0.8366	0.5346	0.5823	0.5596	0.6759	0.6378	C	ANC	misc	9443
rs893818	24938310	Nakano M	Exfoliation glaucoma or exfoliation syndrome	miscellaneous_diseases	"201 Japanese ancestry cases, 697 Japanese ancestry controls"	EAS	15q24.1	15	73936854	20.94	A	3.00E-84	G	A	0.1778	0.3069	0.5218	0.3191	0.3088	0.32688	G	DER	misc	898
rs920915	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	15q21.3	15	58396268	1.13	C	3.00E-11	C	G	0.3457	0.5187	0.248	0.503	0.2699	0.37706	G	DER	misc	59494
rs925489	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	9q22.33	9	97784318	1.28	T	2.00E-19	C	T	0.851	0.6931	0.8671	0.661	0.8139	0.77722	C	DER	misc	39282
rs9268516	23028483	Ramasamy A	Asthma	miscellaneous_diseases	"1,716 European ancestry cases, 16,888 European ancestry controls"	EAS	6p21.32	6	32411712	1.15	T	1.00E-08	C	T	0.1672	0.3156	0.1171	0.2763	0.2178	0.2188	C	DER	misc	18604
rs9271100	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	6p21.32	6	32608701	1.68	T	8.00E-95	T	C	0.1997	0.2075	0.2321	0.2654	0.2914	0.23922	T	ANC	misc	8060
rs9271858	23291585	Fakiola M	Leishmaniasis (visceral)	miscellaneous_diseases	"989 Indian ancestry cases, 1,089 Indian ancestry controls, 357 Brazilian ancestry cases, 1,613 Brazilian ancestry unaffected relatives"	MIX	6p21.32	6	32627446	1.41	G	3.00E-17	A	G	0.3782	0.3458	0.2669	0.4046	0.2618	0.33146	G	ANC	misc	4048
rs9275596	25305756	Kiryluk K	IgA nephropathy	miscellaneous_diseases	"1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls"	EAS	6p21.32	6	32713854	1.44	T	3.00E-31	C	T	0.6952	0.8112	0.8631	0.6899	0.8149	0.77486	T	ANC	misc	6699
rs9275698	21804548	Hirota T	Asthma	miscellaneous_diseases	"1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls"	EAS	6p21.32	6	32720196	1.18	A	5.00E-12	A	G	0.5348	0.6945	0.753	0.664	0.6176	0.65278	A	ANC	misc	4836
rs928413	24241537	Bonnelykke K	Asthma (childhood onset)	miscellaneous_diseases	"1,173 European ancestry cases, 2,511 European ancestry controls"	EUR	9p24.1	9	6213387	1.24	G	9.00E-13	G	A	0.5552	0.2017	0.0714	0.2594	0.2321	0.26396	A	DER	misc	3684
rs9302752	20018961	Zhang FR	Leprosy	miscellaneous_diseases	"706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls"	EAS	16q12.1	16	50685192	1.59	C	4.00E-40	T	C	0.6505	0.549	0.2212	0.7455	0.2955	0.49234	C	ANC	misc	1931
rs9318086	21640322	Shi Y	Myopia (pathological)	miscellaneous_diseases	"419 Han Chinese ancestry high myopia cases, 669 Han Chinese ancestry controls"	EAS	13q12.12	13	23858328	1.32	A	2.00E-16	A	G	0.4879	0.4409	0.4692	0.4662	0.2546	0.42376	A	ANC	misc	1088
rs9319321	19187332	Kim SH	Asthma (toluene diisocyanate-induced)	miscellaneous_diseases	"84 Korean ancestry cases, 263 Korean ancestry controls"	EAS	13q12.13	13	26841536	5.2	T	3.00E-06	A	T	0.8933	0.611	0.629	0.7485	0.6084	0.69804	T	ANC	misc	347
rs9362054	25364816	Awata T	Diabetic retinopathy in type 2 diabetes	miscellaneous_diseases	"205 Japanese ancestry cases, 241 Japanese ancestry controls"	EAS	6q14.3	6	84468550	1.4	T	1.00E-06	T	C	0.5272	0.4697	0.3065	0.4851	0.4632	0.45034	T	ANC	misc	446
rs9368677	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	6p21.33	6	31304544	1.36	G	1.00E-17	G	A	0.9251	0.8775	0.7937	0.9225	0.9264	0.88904	G	ANC	misc	9443
rs943080	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	6p21.1	6	43858890	1.15	T	9.00E-16	C	T	0.8328	0.5216	0.7341	0.5149	0.6687	0.65442	T	ANC	misc	59494
rs944899	25234806	Dijkstra AE	Chronic mucus hypersecretion	miscellaneous_diseases	"342 European ancestry cases, 1,006 European ancestry controls"	EUR	13q34	13	112096647	1.4	A	8.00E-06	G	A	0.4251	0.4712	0.4623	0.4652	0.2474	0.41424	G	DER	misc	1348
rs9461776	25030430	Zignego AL	Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection	miscellaneous_diseases	"356 European ancestry cases, 447 European ancestry controls"	EUR	6p21.32	6	32607958	2.02	G	7.00E-09	A	G	0.1082	0.0677	0.0516	0.0845	0.0501	0.07242	A	DER	misc	803
rs9469003	21801394	Genin E	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	miscellaneous_diseases	"424 European ancestry cases, 1,881 European ancestry controls"	EUR	6p21.33	6	31440051	1.73	C	2.00E-09	T	C	0.3381	0.281	0.1776	0.1779	0.2382	0.24256	T	DER	misc	2305
rs9469099	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	6p21.32	6	32341131	1.61	G	5.00E-19	G	A	0.9266	0.9813	0.8383	0.9583	0.9376	0.92842	G	ANC	misc	9443
rs948426	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	18p11.31	18	6567183	1.14	A	1.00E-06	A	G	0.9841	0.6873	0.9435	0.6074	0.6759	0.77964	A	ANC	misc	39282
rs9500927	21804548	Hirota T	Asthma	miscellaneous_diseases	"1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls"	EAS	6p21.32	6	32993584	1.13	A	4.00E-09	G	A	0.3601	0.1037	0.2321	0.1352	0.092	0.18462	G	DER	misc	4836
rs9542236	23455636	Fritsche LG	Age-related macular degeneration	miscellaneous_diseases	"6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls"	MIX	13q12.3	13	31245188	1.1	C	2.00E-08	T	C	0.1815	0.2723	0.0149	0.4205	0.1421	0.20626	T	DER	misc	59494
rs9543976	23562823	Sheu WH	Diabetic retinopathy	miscellaneous_diseases	"437 Chinese ancestry cases, 570 Chinese ancestry controls"	EAS	13q22.2	13	75562512	1.6	G	7.00E-06	G	A	0.6596	0.3718	0.3026	0.1213	0.2096	0.33298	A	DER	misc	1007
rs955943	23585552	Kirin M	Rhegmatogenous retinal detachment	miscellaneous_diseases	"867 European ancestry cases, 1,953 European ancestry controls"	EUR	4p15.32	4	16512785	1.41	T	5.00E-06	C	T	0.211	0.1167	0.0536	0.0606	0.0419	0.09676	C	DER	misc	2820
rs9567307	25642632	Liu H	Leprosy	miscellaneous_diseases	"1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases"	EAS	13q14.11	13	43897741	1.58	A	1.00E-93	A	G	0.6641	0.6326	0.6528	0.7724	0.6953	0.68344	A	ANC	misc	8060
rs9574565	20023658	Mangold E	Orofacial clefts	miscellaneous_diseases	"399 European ancestry cases, 1,318 European ancestry controls"	EUR	13q31.1	13	80094739	1.31	C	3.00E-07	T	C	0.3472	0.7709	0.875	0.7614	0.6278	0.67646	T	DER	misc	1717
rs958617	24057671	Chimusa ER	Tuberculosis	miscellaneous_diseases	"642 South African coloured cases, 91 South African coloured controls"	AFR	4q21.1	4	77684215	6.6667	G	3.00E-07	A	G	0.1225	0.6081	0.6329	0.7326	0.6237	0.54396	A	DER	misc	733
rs9866141	21441570	Grassi MA	Diabetic retinopathy	miscellaneous_diseases	"973 European ancestry cases, 1,856 European ancestry controls"	EUR	3q25.31	3	157232790	1.02	T	9.00E-07	C	T	0.0348	0.0865	0.0863	0.0477	0.0859	0.06824	C	DER	misc	2829
rs987525	20436469	Beaty TH	Cleft lip	miscellaneous_diseases	"825 European ancestry trios, 1,038 Asian ancestry trios"	MIX	8q24.21	8	128933908	1.78	A	4.00E-16	C	A	0.618	0.219	0.0843	0.1938	0.1973	0.26248	A	ANC	misc	1863
rs987525	19270707	Birnbaum S	Orofacial clefts	miscellaneous_diseases	"224 European ancestry cases, 383 European ancestry controls"	EUR	8q24.21	8	128933908	2.57	A	3.00E-24	C	A	0.618	0.219	0.0843	0.1938	0.1973	0.26248	A	ANC	misc	607
rs988958	25108383	Geller F	Hypospadias	miscellaneous_diseases	"1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls"	EUR	2p21	2	42060166	1.3	G	2.00E-10	G	A	0.7322	0.8429	0.9187	0.7167	0.6984	0.78178	G	ANC	misc	6492
rs9895098	24824216	Myers RA	Asthma (sex interaction)	miscellaneous_diseases	"1,052 European ancestry male cases, 1,019 European ancestry female cases, 709 European ancestry male controls, 826 European ancestry female controls, 675 African American/African Caribbean male cases, 837 African American/African Caribbean female cases, 577 African American/African Caribbean male controls, 926 African American/African Caribbean female controls, 926 Latino male cases, 710 Latino female cases, 410 Latino male controls, 382 Latino female controls"	MIX	17p13.3	17	3035239	2.31	C	3.00E-07	T	C	0.3026	0.1254	0.1538	0.1491	0.1656	0.1793	C	ANC	misc	9049
rs9901756	22493691	Eriksson N	Hypothyroidism	miscellaneous_diseases	"3,736 European ancestry cases, 35,546 European ancestry controls"	EUR	17q12	17	34137135	1.21	A	7.00E-06	A	C	0.8071	0.8833	0.999	0.9145	0.9121	0.9032	A	ANC	misc	39282
rs991964	21460842	Cha PC	Uterine fibroids	miscellaneous_diseases	"1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls"	EAS	2p16.1	2	59055456	1.15	T	9.00E-06	T	C	0.1188	0.4942	0.3413	0.5388	0.4162	0.38186	C	DER	misc	3035
rs9923856	23042114	Hirota T	Atopic dermatitis	miscellaneous_diseases	"1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls"	EAS	16p13.13	16	11116558	1.17	T	6.00E-06	T	C	0.3056	0.7118	0.8145	0.6899	0.7035	0.64506	C	DER	misc	9443
rs9953270	23897914	Wang H	Bronchopulmonary dysplasia	miscellaneous_diseases	"117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls"	MIX	18q11.2	18	27107407	1.3333	C	3.00E-06	T	C	0.3336	0.33	0.5119	0.328	0.4918	0.39906	T	DER	misc	1726
rs9975851	22837378	Wilk JB	Airflow obstruction	miscellaneous_diseases	"up to 3,368 European ancestry cases, up to 29,507 European ancestry controls"	EUR	21q21.3	21	26344335	1.17	T	4.00E-06	C	T	0.4644	0.5476	0.7808	0.5726	0.6431	0.6017	C	DER	misc	32875
rs1020064	19754311	Le Clerc S	AIDS	STD_or_AIDS	"85 European ancestry cases, 2,049 European ancestry controls"	EUR	2q12.1	2	105281283	2.94	G	7.00E-06	T	G	0.8245	0.8674	0.8095	0.7922	0.7853	0.81578	G	ANC	misc	2134
rs10800098	19754311	Le Clerc S	AIDS	STD_or_AIDS	"85 European ancestry cases, 2,049 European ancestry controls"	EUR	1q23.3	1	165439858	3.29	A	4.00E-06	G	A	0.0121	0.1484	0.3472	0.0537	0.0675	0.12578	G	DER	misc	2134
rs1360517	19754311	Le Clerc S	AIDS	STD_or_AIDS	"85 European ancestry cases, 2,049 European ancestry controls"	EUR	9p23	9	13007130	3.09	T	3.00E-06	T	C	0.2103	0.062	0.1329	0.0845	0.2434	0.14662	T	ANC	misc	2134
rs1522232	19754311	Le Clerc S	AIDS	STD_or_AIDS	"85 European ancestry cases, 2,049 European ancestry controls"	EUR	12p12.1	12	24241438	2.22	C	2.00E-06	T	C	0.3775	0.4366	0.2242	0.5109	0.3415	0.37814	C	ANC	misc	2134
rs1556032	19754311	Le Clerc S	AIDS	STD_or_AIDS	"85 European ancestry cases, 2,049 European ancestry controls"	EUR	9p22.3	9	14446003	2.05	C	9.00E-06	C	T	0.8366	0.3977	0.5317	0.5298	0.6513	0.58942	C	ANC	misc	2134
rs2395029	19115949	Limou S	AIDS progression	STD_or_AIDS	"275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls"	EUR	6p21.33	6	31464003	3.47	G	3.00E-19	T	G	0.0045	0.0202	0.0119	0.0437	0.093	0.03466	T	DER	misc	1713
rs2856718	21750111	Mbarek H	Hepatitis B	STD_or_AIDS	"458 Japanese ancestry cases, 2,056 Japanese ancestry controls"	EAS	6p21.32	6	32702478	1.56	T	4.00E-37	C	T	0.3585	0.3804	0.5278	0.3509	0.5082	0.42516	C	DER	misc	2514
rs3077	21750111	Mbarek H	Hepatitis B	STD_or_AIDS	"458 Japanese ancestry cases, 2,056 Japanese ancestry controls"	EAS	6p21.32	6	33065245	1.87	G	2.00E-61	A	G	0.5809	0.2839	0.6796	0.1889	0.3671	0.42008	G	ANC	misc	2514
rs3077	22737229	Nishida N	Hepatitis B (viral clearance)	STD_or_AIDS	"181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals"	EAS	6p21.32	6	33065245	1.82	G	4.00E-45	A	G	0.5809	0.2839	0.6796	0.1889	0.3671	0.42008	G	ANC	misc	550
rs3130542	24162738	Hu Z	Hepatitis B	STD_or_AIDS	"951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls"	EAS	6p21.33	6	31264334	1.33	A	9.00E-14	A	G	0.1755	0.1585	0.1835	0.1889	0.2454	0.19036	G	DER	misc	1888
rs4118325	19754311	Le Clerc S	AIDS	STD_or_AIDS	"85 European ancestry cases, 2,049 European ancestry controls"	EUR	1p13.3	1	107035210	4.17	G	6.00E-07	G	A	0.739	0.8458	0.8442	0.7873	0.7791	0.79908	G	ANC	misc	2134
rs477515	24282030	Pan L	Hepatitis B vaccine response	STD_or_AIDS	"108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls"	EAS	6p21.32	6	32601914	2.05	A	3.00E-19	G	A	0.205	0.3372	0.1667	0.3151	0.2863	0.26206	G	DER	misc	185
rs8099917	20060832	Rauch A	Chronic hepatitis C infection	STD_or_AIDS	"1,015 European ancestry chronic HCV carriers, 347 European ancestry spontaneously cleared HCV individuals"	EUR	19q13.2	19	39252525	2.31	G	6.00E-09	T	G	0.0424	0.2767	0.0764	0.168	0.1667	0.14604	T	DER	misc	1362
rs9275572	24376798	Miki D	Chronic hepatitis C infection	STD_or_AIDS	"481 Japanese ancestry cases, 2,963 Japanese ancestry controls"	EAS	6p21.32	6	32711222	1.27	A	4.00E-16	A	G	0.3986	0.3141	0.254	0.3996	0.2812	0.3295	G	DER	misc	3444
rs9276370	24940741	Chang SW	Chronic hepatitis B infection	STD_or_AIDS	"321 Chinese ancestry cases, 304 Chinese ancestry controls"	EAS	"6p21.32, 6p21.32[rs9276370]; 6p21.32[rs7756516]"	6	32739518	1.95	T	2.00E-12	G	T	0.289	0.6326	0.8413	0.5924	0.7853	0.62812	T	ANC	misc	625
rs9366816	24940741	Chang SW	Chronic hepatitis B infection	STD_or_AIDS	"321 Chinese ancestry cases, 304 Chinese ancestry controls"	EAS	6p21.32	6	33136398	1.43	C	3.00E-10	T	C	0.1573	0.3746	0.4603	0.2306	0.1769	0.27994	T	DER	misc	625
rs10192369	19451621	Landers JE	Amyotrophic lateral sclerosis	morphological_or_muscular	"1,821 cases, 2,258 controls"	MIX	2q24.2	2	160524377	1.17	A	9.00E-06	G	A	0.2126	0.6441	0.6905	0.5209	0.5757	0.52876	G	DER	morpho	4079
rs10233425	24931836	Diekstra FP	Amyotrophic lateral sclerosis	morphological_or_muscular	"4,377 European ancestry cases, 13,017 European ancestry controls"	EUR	7p21.1	7	19257345	1.88	C	8.00E-06	T	C	0.1619	0.072	0.1766	0.0169	0.1022	0.10592	C	ANC	morpho	17394
rs10260404	18084291	van Es MA	Amyotrophic lateral sclerosis	morphological_or_muscular	"737 European ancestry cases, 721 European ancestry controls"	EUR	7q36.2	7	154513713	1.3	C	5.00E-08	T	C	0.3457	0.2824	0.1528	0.3817	0.3517	0.30286	C	ANC	morpho	1458
rs10262453	23160099	Justice CM	Sagittal craniosynostosis	morphological_or_muscular	130 European ancestry trios	EUR	7p14.3	7	33216427	4.17	A	6.00E-20	A	C	0.8744	0.6009	0.9613	0.6769	0.8088	0.78446	A	ANC	morpho	130
rs10438933	19451621	Landers JE	Amyotrophic lateral sclerosis	morphological_or_muscular	"1,821 cases, 2,258 controls"	MIX	18q12.1	18	31693166	1.3	G	1.00E-06	A	G	0.1989	0.0879	0.0169	0.1491	0.0307	0.0967	A	DER	morpho	4079
rs10510181	21216876	Sharma S	Adolescent idiopathic scoliosis	morphological_or_muscular	"1,113 European, African, Oceania, Hispanic and other ancestry individuals from 418 families"	MIX	3p26.3	3	149364	1.37	A	8.00E-07	G	A	0.1641	0.3991	0.5089	0.3439	0.2147	0.32614	G	DER	morpho	1531
rs11045000	25064007	Nakajima M	Ossification of the posterior longitudinal ligament of the spine	morphological_or_muscular	"1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls"	EAS	12p12.2	12	20031212	1.28	A	3.00E-11	G	A	0.2231	0.1427	0.5327	0.1481	0.2873	0.26678	G	DER	morpho	7922
rs11082762	22959728	Ahmeti KB	Amyotrophic lateral sclerosis	morphological_or_muscular	"4,243 European ancestry cases, 5,112 European ancestry controls"	EUR	18q11.2	18	23785889	1.16	A	7.00E-07	A	G	0.7519	0.598	0.8135	0.3936	0.6564	0.64268	A	ANC	morpho	9355
rs12593813	21779176	Winkelmann J	Restless legs syndrome	morphological_or_muscular	"922 European ancestry cases, 1,526 European ancestry controls"	EUR	15q23	15	67744514	1.41	G	1.00E-22	A	G	0.2466	0.389	0.375	0.6392	0.5337	0.4367	A	DER	morpho	2448
rs12946942	24023777	Miyake A	Adolescent idiopathic scoliosis (severe)	morphological_or_muscular	"554 Japanese ancestry cases, 1,474 Japanese ancestry controls"	EAS	17q24.3	17	71240857	2.21	T	6.00E-12	G	T	0.003	0.183	0.2411	0.0934	0.0746	0.11902	G	DER	morpho	2028
rs13015447	19451621	Landers JE	Amyotrophic lateral sclerosis	morphological_or_muscular	"1,821 cases, 2,258 controls"	MIX	2q24.3	2	166521468	1.41	C	7.00E-06	A	C	0.348	0.3934	0.6458	0.4294	0.2935	0.42202	A	DER	morpho	4079
rs13021401	21750679	Allanore Y	Systemic sclerosis	morphological_or_muscular	"564 European ancestry cases, 1,776 European ancestry controls"	EUR	2p24.1	2	20488758	1.21	T	3.00E-06	C	T	0.087	0.2925	0.629	0.2416	0.4693	0.34388	C	DER	morpho	2340
rs13048019	20801718	Laaksovirta H	Amyotrophic lateral sclerosis	morphological_or_muscular	"405 European ancestry cases, 497 European ancestry controls"	EUR	21q22.11	21	31545981	2.02	T	3.00E-08	C	T	0.0416	0.183	0.0149	0.169	0.092	0.1001	C	DER	morpho	902
rs13182402	20072603	Guo Y	Osteoporosis	morphological_or_muscular	"350 Han Chinese ancestry cases, 350 Han Chinese ancestry controls"	EAS	5q23.2	5	126582456	2.25	G	2.00E-09	A	G	0.2632	0.0735	0.0575	0.0994	0.1462	0.12796	A	DER	morpho	700
rs13279799	25064007	Nakajima M	Ossification of the posterior longitudinal ligament of the spine	morphological_or_muscular	"1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls"	EAS	8q23.3	8	116529369	1.28	C	1.00E-10	T	C	0.056	0.1009	0.3542	0.1759	0.2587	0.18914	T	DER	morpho	7922
rs16856202	19451621	Landers JE	Amyotrophic lateral sclerosis	morphological_or_muscular	"1,821 cases, 2,258 controls"	MIX	1q42.2	1	232019405	2	G	8.00E-06	T	G	0.0045	0.0778	0.1508	0.0288	0.0665	0.06568	T	DER	morpho	4079
rs1884302	23160099	Justice CM	Sagittal craniosynostosis	morphological_or_muscular	130 European ancestry trios	EUR	20p12.3	20	7125642	4.38	C	1.00E-39	T	C	0.6551	0.3948	0.3899	0.328	0.2546	0.40448	C	ANC	morpho	130
rs1971791	22959728	Ahmeti KB	Amyotrophic lateral sclerosis	morphological_or_muscular	"4,243 European ancestry cases, 5,112 European ancestry controls"	EUR	15q23	15	70283799	1.26	G	1.00E-06	G	A	0.7292	0.4856	0.5437	0.4881	0.5307	0.55546	G	ANC	morpho	9355
rs1975197	21779176	Winkelmann J	Restless legs syndrome	morphological_or_muscular	"922 European ancestry cases, 1,526 European ancestry controls"	EUR	9p24.1	9	8846955	1.29	A	3.00E-10	G	A	0.0915	0.232	0.3036	0.167	0.2331	0.20544	G	DER	morpho	2448
rs1979679	25064007	Nakajima M	Ossification of the posterior longitudinal ligament of the spine	morphological_or_muscular	"1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls"	EAS	12p11.22	12	28253582	1.3	T	4.00E-12	T	C	0.8313	0.6398	0.4484	0.7485	0.6319	0.65998	T	ANC	morpho	7922
rs2056626	21750679	Allanore Y	Systemic sclerosis	morphological_or_muscular	"564 European ancestry cases, 1,776 European ancestry controls"	EUR	1q24.2	1	167451188	1.2	T	1.00E-06	T	G	0.9198	0.7594	0.9058	0.6103	0.7546	0.78998	G	DER	morpho	2340
rs2233287	21750679	Allanore Y	Systemic sclerosis	morphological_or_muscular	"564 European ancestry cases, 1,776 European ancestry controls"	EUR	5q33.1	5	151060536	1.31	A	5.00E-09	G	A	0.2126	0.0908	0.003	0.0815	0.047	0.08698	G	DER	morpho	2340
rs2300478	21779176	Winkelmann J	Restless legs syndrome	morphological_or_muscular	"922 European ancestry cases, 1,526 European ancestry controls"	EUR	2p14	2	66554321	1.68	G	3.00E-49	T	G	0.1127	0.2161	0.2897	0.2475	0.273	0.2278	T	DER	morpho	2448
rs2303565	22959728	Ahmeti KB	Amyotrophic lateral sclerosis	morphological_or_muscular	"4,243 European ancestry cases, 5,112 European ancestry controls"	EUR	2q35	2	218680586	1.17	C	6.00E-07	T	C	0.9266	0.4265	0.1429	0.4254	0.3262	0.44952	C	ANC	morpho	9355
rs2423294	25064007	Nakajima M	Ossification of the posterior longitudinal ligament of the spine	morphological_or_muscular	"1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls"	EAS	20p12.3	20	7839121	1.41	A	1.00E-13	G	A	0.1861	0.134	0.1776	0.166	0.1646	0.16566	G	DER	morpho	7922
rs3104767	21779176	Winkelmann J	Restless legs syndrome	morphological_or_muscular	"922 European ancestry cases, 1,526 European ancestry controls"	EUR	"16q12.1, 16q12.2"	16	52590826	1.35	G	9.00E-19	G	T	0.3858	0.4035	0.2024	0.5676	0.5429	0.42044	T	DER	morpho	2448
rs3130573	21750679	Allanore Y	Systemic sclerosis	morphological_or_muscular	"564 European ancestry cases, 1,776 European ancestry controls"	EUR	6p21.33	6	31138491	1.25	G	6.00E-10	A	G	0.4879	0.317	0.1835	0.3469	0.3241	0.33188	A	DER	morpho	2340
rs374810	25064007	Nakajima M	Ossification of the posterior longitudinal ligament of the spine	morphological_or_muscular	"1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls"	EAS	8q23.1	8	108083801	1.34	G	2.00E-13	G	A	0.8154	0.6527	0.5069	0.5199	0.4611	0.5912	A	DER	morpho	7922
rs3821236	20383147	Radstake TR	Systemic sclerosis	morphological_or_muscular	"2,296 European ancestry cases, 5,171 European ancestry controls"	EUR	"2q32.2, 2q32.3"	2	191038032	1.3	A	3.00E-09	G	A	0.2943	0.4625	0.4137	0.1988	0.1953	0.31292	G	DER	morpho	7467
rs3849942	20801718	Laaksovirta H	Amyotrophic lateral sclerosis	morphological_or_muscular	"405 European ancestry cases, 497 European ancestry controls"	EUR	"9p21.2, 9p21.2[rs3849942]; 9p21.2[rs10122902]"	9	27543283	2.16	T	9.00E-11	T	C	0.2466	0.147	0.0933	0.2326	0.1616	0.17622	C	DER	morpho	902
rs3849943	24931836	Diekstra FP	Amyotrophic lateral sclerosis	morphological_or_muscular	"4,377 European ancestry cases, 13,017 European ancestry controls"	EUR	9p21.2	9	27543384	1.22	C	6.00E-10	C	T	0.2466	0.147	0.0933	0.2326	0.1616	0.17622	T	DER	morpho	17394
rs3923809	17634447	Stefansson H	Restless legs syndrome	morphological_or_muscular	"306 European ancestry cases, 15,664 European ancestry controls"	EUR	6p21.2	6	38473194	1.9	A	1.00E-17	A	G	0.7201	0.6527	0.3661	0.6899	0.5665	0.59906	G	DER	morpho	15970
rs4626664	18660810	Schormair B	Restless legs syndrome	morphological_or_muscular	"628 European ancestry cases, 1,644 European ancestry controls"	EUR	9p23	9	9261737	1.44	A	6.00E-10	G	A	0.2927	0.2608	0.3899	0.1431	0.2362	0.26454	G	DER	morpho	2272
rs4917300	22959728	Ahmeti KB	Amyotrophic lateral sclerosis	morphological_or_muscular	"4,243 European ancestry cases, 5,112 European ancestry controls"	EUR	8q24.3	8	142040310	1.27	T	2.00E-06	T	C	0.3548	0.3732	0.3085	0.494	0.4468	0.39546	C	DER	morpho	9355
rs6703183	23624525	Deng M	Amyotrophic lateral sclerosis	morphological_or_muscular	"506 Han Chinese ancestry cases, 1,859 Han Chinese ancestry controls"	EAS	1q32.2	1	209539544	1.312	T	3.00E-08	T	C	0.1679	0.5965	0.3671	0.6461	0.6339	0.4823	C	DER	morpho	2365
rs6747972	21779176	Winkelmann J	Restless legs syndrome	morphological_or_muscular	"922 European ancestry cases, 1,526 European ancestry controls"	EUR	2p14	2	67843093	1.23	A	9.00E-11	A	G	0.0749	0.4827	0.3502	0.4205	0.3282	0.3313	G	DER	morpho	2448
rs7477	22959728	Ahmeti KB	Amyotrophic lateral sclerosis	morphological_or_muscular	"4,243 European ancestry cases, 5,112 European ancestry controls"	EUR	17p11.2	17	16342702	1.3	A	3.00E-07	A	C	0.8941	0.6297	0.996	0.4891	0.7597	0.75372	A	ANC	morpho	9355
rs7574865	21750679	Allanore Y	Systemic sclerosis	morphological_or_muscular	"564 European ancestry cases, 1,776 European ancestry controls"	EUR	"2q32.2, 2q32.3"	2	191099907	1.38	T	2.00E-13	T	G	0.1165	0.3617	0.3472	0.2296	0.2996	0.27092	T	ANC	morpho	2340
rs7577894	19451621	Landers JE	Amyotrophic lateral sclerosis	morphological_or_muscular	"1,821 cases, 2,258 controls"	MIX	2p16.1	2	55781769	1.41	T	1.00E-06	T	C	0.2284	0.5836	0.1111	0.5845	0.3957	0.38066	T	ANC	morpho	4079
rs7607369	22959728	Ahmeti KB	Amyotrophic lateral sclerosis	morphological_or_muscular	"4,243 European ancestry cases, 5,112 European ancestry controls"	EUR	2q35	2	218414374	1.15	A	7.00E-06	A	G	0.8994	0.4193	0.255	0.4125	0.3497	0.46718	A	ANC	morpho	9355
rs7702057	19451621	Landers JE	Amyotrophic lateral sclerosis	morphological_or_muscular	"1,821 cases, 2,258 controls"	MIX	5q23.1	5	116392141	2.05	T	8.00E-06	G	T	0.4281	0.0432	0.1429	0.0497	0.1278	0.15834	T	ANC	morpho	4079
rs784288	23349225	Hwang JY	Osteoporosis	morphological_or_muscular	"288 Korean ancestry cases, 1,139 Korean ancestry controls"	EAS	3q26.2	3	169253443	1.39	A	4.00E-08	A	G	0.3064	0.4524	0.2996	0.5885	0.4458	0.41854	G	DER	morpho	1427
rs8056742	22959728	Ahmeti KB	Amyotrophic lateral sclerosis	morphological_or_muscular	"4,243 European ancestry cases, 5,112 European ancestry controls"	EUR	16q24.1	16	85059142	1.27	C	5.00E-07	T	C	0.4592	0.1081	0.0169	0.1213	0.0399	0.14908	C	ANC	morpho	9355
rs873917	19451621	Landers JE	Amyotrophic lateral sclerosis	morphological_or_muscular	"1,821 cases, 2,258 controls"	MIX	1p34.2	1	39667123	1.16	T	8.00E-06	T	G	0.4009	0.4395	0.5446	0.3101	0.3405	0.40712	T	ANC	morpho	4079
rs927485	25064007	Nakajima M	Ossification of the posterior longitudinal ligament of the spine	morphological_or_muscular	"1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls"	EAS	6p21.1	6	44570402	1.33	G	9.00E-09	G	A	0.8843	0.268	0.0982	0.3101	0.1963	0.35138	G	ANC	morpho	7922
rs9296249	17637780	Winkelmann J	Restless legs syndrome	morphological_or_muscular	"401 European ancestry cases, 1,644 European ancestry controls"	EUR	6p21.2	6	38398065	1.67	T	4.00E-18	T	C	0.5802	0.6686	0.4851	0.7366	0.6636	0.62682	T	ANC	morpho	2045
rs9357271	21779176	Winkelmann J	Restless legs syndrome	morphological_or_muscular	"922 European ancestry cases, 1,526 European ancestry controls"	EUR	6p21.2	6	38398097	1.47	T	8.00E-22	T	C	0.3699	0.5562	0.1339	0.7336	0.4581	0.45034	T	ANC	morpho	2448
rs9533799	22959728	Ahmeti KB	Amyotrophic lateral sclerosis	morphological_or_muscular	"4,243 European ancestry cases, 5,112 European ancestry controls"	EUR	13q14.11	13	44234038	1.17	A	4.00E-06	C	A	0.3071	0.2637	0.0843	0.3569	0.3988	0.28216	C	DER	morpho	9355
rs10175798	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	2p23.1	2	30226728	1.08	A	1.00E-09	G	A	0.267	0.6052	0.3532	0.6203	0.4734	0.46382	G	DER	morpho	79799
rs1018326	20062062	Reveille JD	Ankylosing spondylitis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,053 European ancestry cases, 5,140 European ancestry controls"	EUR	2q31.3	2	181143073	1.24	C	2.00E-06	T	C	0.4947	0.5922	0.7351	0.4384	0.6667	0.58542	T	DER	morpho	7193
rs10411936	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	19p13.11	19	16437564	1.16	A	2.00E-07	A	G	0.5371	0.3703	0.4077	0.3062	0.2771	0.37968	A	ANC	morpho	17698
rs10488631	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	7q32.1	7	128954129	1.19	C	4.00E-11	T	C	0.0068	0.0749	0.002	0.1004	0.135	0.06382	T	DER	morpho	25708
rs10492972	18997785	Aulchenko YS	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"45 European ancestry cases,195 European ancestry controls"	EUR	1p36.22	1	10293054	1.34	C	3.00E-10	T	C	0.3116	0.3746	0.3472	0.334	0.2771	0.3289	T	DER	morpho	240
rs10499194	17982456	Plenge RM	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"397 European ancestry cases, 1,211 controls"	EUR	6q23.3	6	137681500	1.33	C	1.00E-09	C	T	0.8699	0.7219	0.9673	0.7197	0.7147	0.7987	C	ANC	morpho	1608
rs10773046	23989986	Evangelou E	Osteoarthritis (hip)	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 4,734 European ancestry cases, up to 46,903 European ancestry controls"	EUR	12q24.31	12	123890663	1.07	G	2.00E-06	A	G	0.4932	0.4712	0.2897	0.4781	0.3569	0.41782	G	ANC	morpho	51637
rs10790268	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	11q23.3	11	118858682	1.17	G	1.00E-17	A	G	0.767	0.8444	0.8929	0.8111	0.8241	0.8279	G	ANC	morpho	79799
rs10821944	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	10q21.2	10	62025330	1.16	G	6.00E-18	G	T	0.447	0.4438	0.2827	0.2873	0.3323	0.35862	G	ANC	morpho	20965
rs10865035	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	2q11.2	2	100219272	1.12	A	2.00E-06	A	G	0.8623	0.6254	0.4107	0.4592	0.6022	0.59196	G	DER	morpho	25708
rs10865331	20062062	Reveille JD	Ankylosing spondylitis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,053 European ancestry cases, 5,140 European ancestry controls"	EUR	2p15	2	62324337	1.27	A	2.00E-19	A	G	0.5416	0.3905	0.4554	0.3847	0.4438	0.4432	G	DER	morpho	7193
rs10866713	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	5q33.3	5	159491886	1.17	A	7.00E-07	G	A	0.1271	0.134	0.002	0.2038	0.1329	0.11996	G	DER	morpho	17698
rs10947262	20305777	Nakajima M	Knee osteoarthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"899 Japanese ancestry cases, 3,396 Japanese ancestry controls"	EAS	6p21.32	6	32405535	1.31	T	5.00E-09	C	T	0.1551	0.1556	0.3155	0.1004	0.2178	0.18888	T	ANC	morpho	4295
rs10948172	22763110	Loughlin	Osteoarthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"7,410 European ancestry cases, 11,009 European ancestry controls"	EUR	6p21.1	6	44809954	1.08	G	6.00E-07	A	G	0.3003	0.1772	0.0387	0.2942	0.1513	0.19234	A	DER	morpho	18419
rs10984447	17660530	Hafler DA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"931 European ancestry trios, 2,431 European ancestry controls"	EUR	9q33.1	9	119222275	1.17	A	8.00E-06	A	G	0.9349	0.7594	0.8948	0.7744	0.7863	0.82996	A	ANC	morpho	3362
rs11177	22763110	Loughlin	Osteoarthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"7,410 European ancestry cases, 11,009 European ancestry controls"	EUR	3p21.1	3	52687289	1.09	A	5.00E-09	G	A	0.1467	0.4582	0.4236	0.4175	0.2076	0.33072	G	DER	morpho	18419
rs11203203	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	21q22.3	21	42416077	1.11	A	4.00E-06	G	A	0.1293	0.2205	0.0238	0.3519	0.2955	0.2042	A	ANC	morpho	25708
rs11676922	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	2q11.2	2	100190478	1.12	T	1.00E-14	T	A	0.556	0.5879	0.4018	0.4592	0.5746	0.5159	A	DER	morpho	25708
rs11761231	17554300	WTCCC	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,860 European ancestry cases, 2,938 European ancestry controls"	EUR	7q32.3	7	131685280	1.44	C	4.00E-07	T	C	0.8033	0.5058	0.2421	0.6382	0.5511	0.5481	C	ANC	morpho	4798
rs11842874	21871595	Day-Williams AG	Osteoarthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"3,177 European ancestry cases, 4,894 European ancestry controls"	EUR	13q34	13	113040195	1.17	A	2.00E-08	A	G	0.764	0.9308	0.8294	0.9245	0.9438	0.8785	G	DER	morpho	8071
rs11865121	19525953	De Jager PL	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,624 European ancestry cases, 7,220 European ancestry controls"	EUR	16p13.13	16	11072831	1.15	C	2.00E-07	C	A	0.3714	0.7349	0.7778	0.667	0.6022	0.63066	A	DER	morpho	9844
rs11900673	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EUR	2p15	2	62225526	1.11	T	1.00E-08	C	T	0.1241	0.2435	0.2034	0.1262	0.2065	0.18074	C	DER	morpho	20965
rs12131057	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	1p34.3	1	38158457	1.16	G	4.00E-07	G	A	0.8903	0.8718	0.9861	0.7793	0.7802	0.86154	G	ANC	morpho	25708
rs12140275	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	1p34.3	1	38168207	1.11	A	2.00E-09	A	T	0.8328	0.866	0.9861	0.7823	0.7791	0.84926	A	ANC	morpho	79799
rs12188300	20953186	Huffmeier U	Psoriatic arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"572 European ancestry cases, 888 European ancestry controls"	EUR	5q33.3	5	159402519	1.7	T	7.00E-17	A	T	0.0053	0.0375	0.001	0.0606	0.0102	0.02292	A	DER	morpho	1460
rs12379034	24782177	Jiang L	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls"	EAS	9q33.2	9	120400388	1.489	G	1.00E-16	A	G	0.3033	0.2118	0.2718	0.1441	0.1513	0.21646	G	ANC	morpho	1895
rs12411988	22354554	Thompson SD	Arthritis (juvenile idiopathic)	"morphological_or_muscular, allergy_autoimmune_immune"	"814 European ancestry cases, 658 European ancestry controls, 2,400 controls"	EUR	10q21.3	10	63555637	1.18	C	3.00E-07	G	C	0.0257	0.1383	0.251	0.1501	0.272	0.16742	G	DER	morpho	3872
rs12413578	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	10p14	10	9007290	1.2	C	5.00E-08	C	T	0.9879	0.9236	0.9861	0.8926	0.9182	0.94168	C	ANC	morpho	79799
rs1250540	19525953	De Jager PL	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,624 European ancestry cases, 7,220 European ancestry controls"	EUR	10q22.3	10	79276250	1.12	G	2.00E-06	A	G	0.1755	0.2968	0.4246	0.333	0.4029	0.32656	A	DER	morpho	9844
rs1250542	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	10q22.3	10	79274913	1.15	A	4.00E-07	G	A	0.174	0.2954	0.4147	0.333	0.4018	0.32378	G	DER	morpho	17698
rs12525220	24782177	Jiang L	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls"	EAS	6p21.32	6	32707693	3.015	A	7.00E-14	G	A	0.0794	0.1066	0.0655	0.0586	0.0133	0.06468	G	DER	morpho	1895
rs12529514	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	6p23	6	14096427	1.14	C	2.00E-08	T	C	0.0091	0.0274	0.1984	0.0596	0.1411	0.08712	C	ANC	morpho	20965
rs12617656	24782177	Jiang L	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls"	EAS	2q24.2	2	161994637	1.557	T	2.00E-21	T	C	0.6331	0.6499	0.3472	0.6541	0.7577	0.6084	T	ANC	morpho	1895
rs12719740	22354554	Thompson SD	Arthritis (juvenile idiopathic)	"morphological_or_muscular, allergy_autoimmune_immune"	"814 European ancestry cases, 658 European ancestry controls, 2,400 controls"	EUR	15q26.3	15	98529676	1.15	A	7.00E-07	G	A	0.2632	0.2392	0.1647	0.1958	0.1963	0.21184	G	DER	morpho	3872
rs12722489	17660530	Hafler DA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"931 European ancestry trios, 2,431 European ancestry controls"	EUR	10p15.1	10	6060049	1.25	C	3.00E-08	C	T	0.9917	0.938	0.869	0.8579	0.8701	0.90534	C	ANC	morpho	3362
rs13017599	19503088	Gregersen PK	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,418 European ancestry cases, 4,504 European ancestry controls"	EUR	2p16.1	2	60937196	1.21	A	2.00E-12	G	A	0.0303	0.219	0.0099	0.3569	0.0716	0.13754	G	DER	morpho	6922
rs13031237	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	2p16.1	2	60908994	1.13	T	8.00E-07	G	T	0.031	0.219	0.0149	0.3598	0.0726	0.13946	G	DER	morpho	25708
rs13119723	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	4q27	4	122297158	1.12	A	7.00E-07	A	G	0.9909	0.9323	0.999	0.8459	0.8875	0.93112	A	ANC	morpho	25708
rs13191343	20953186	Huffmeier U	Psoriatic arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"572 European ancestry cases, 888 European ancestry controls"	EUR	6p21.33	6	31273332	2.37	T	2.00E-72	C	T	0.0862	0.0879	0.0972	0.1421	0.2894	0.14056	C	DER	morpho	1460
rs13192471	20453841	Kochi Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls"	EAS	6p21.32	6	32703326	1.97	C	2.00E-58	T	C	0.2519	0.2277	0.122	0.1948	0.1002	0.17932	T	DER	morpho	5683
rs13210693	22138694	Lin Z	Ankylosing spondylitis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,837 Han Chinese ancestry cases, 4,231 Han Chinese ancestry controls"	EAS	6q21	6	109277761	1.15	A	9.00E-07	G	A	0.8896	0.4568	0.4792	0.5308	0.3384	0.53896	A	ANC	morpho	6068
rs1326986	20062062	Reveille JD	Ankylosing spondylitis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,053 European ancestry cases, 5,140 European ancestry controls"	EUR	10p12.31	10	19640584	1.9	C	4.00E-06	T	C	8.00E-04	0.0346	0	0.0557	0.0532	0.02886	T	DER	morpho	7193
rs13315591	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	3p14.3	3	58571114	1.29	C	5.00E-08	T	C	0.3865	0.0576	0	0.0547	0.0245	0.10466	T	DER	morpho	25708
rs1335532	19525955	Bahlo	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,618 European ancestry cases, 3,413 European ancestry controls"	EUR	1p13.1	1	116558335	1.28	A	1.00E-07	A	G	0.413	0.6326	0.4107	0.8539	0.593	0.58064	A	ANC	morpho	5031
rs1516971	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	8q24.21	8	128529854	1.16	T	3.00E-11	T	C	0.6377	0.8847	0.9812	0.8946	0.8957	0.85878	C	DER	morpho	79799
rs1678542	18794853	Raychaudhuri S	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"3,393 European ancestry cases, 12,460 European ancestry controls"	EUR	12q13.3	12	57574932	1.12	C	9.00E-08	C	G	0.5673	0.5216	0.2272	0.6123	0.3926	0.4642	G	DER	morpho	15853
rs170934	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	3p24.1	3	28037594	1.17	T	2.00E-08	C	T	0.1581	0.4265	0.4722	0.4871	0.3773	0.38424	C	DER	morpho	17698
rs17095830	22138694	Lin Z	Ankylosing spondylitis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,837 Han Chinese ancestry cases, 4,231 Han Chinese ancestry controls"	EAS	12q12	12	45381125	1.29	G	2.00E-08	A	G	0.1936	0.0807	0.1577	0.0239	0.1135	0.11388	G	ANC	morpho	6068
rs17149161	21654844	Briggs FB	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,470 European ancestry cases"	EUR	7q11.23	7	76348912	1.87	A	6.00E-06	C	A	0.3306	0.2896	0.4454	0.2982	0.184	0.30956	C	DER	morpho	1470
rs17374222	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	15q23	15	69703005	1.13	A	2.00E-06	C	A	0.6014	0.5922	0.748	0.5298	0.4356	0.5814	C	DER	morpho	25708
rs1738074	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	6q25.3	6	159044945	1.15	C	4.00E-07	T	C	0.298	0.4452	0.4474	0.5666	0.6247	0.47638	T	DER	morpho	17698
rs17445836	19525953	De Jager PL	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,624 European ancestry cases, 7,220 European ancestry controls"	EUR	16q24.1	16	85984057	1.25	G	4.00E-09	G	A	0.9781	0.915	0.9435	0.7823	0.9315	0.91008	G	ANC	morpho	9844
rs17610181	23989986	Evangelou E	Osteoarthritis (hip)	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 4,734 European ancestry cases, up to 46,903 European ancestry controls"	EUR	17q23.2	17	61590592	1.12	A	8.00E-06	G	A	0.0575	0.1037	0.1667	0.1471	0.2832	0.15164	G	DER	morpho	51637
rs1790100	19525953	De Jager PL	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,624 European ancestry cases, 7,220 European ancestry controls"	EUR	12q24.31	12	123172178	1.11	G	7.00E-07	G	T	0.848	0.268	0.002	0.2296	0.2065	0.31082	C	DER	morpho	9844
rs1800693	19525953	De Jager PL	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,624 European ancestry cases, 7,220 European ancestry controls"	EUR	12p13.31	12	6330843	1.2	C	2.00E-11	T	C	0.3608	0.281	0.123	0.4254	0.2832	0.29468	T	DER	morpho	9844
rs1854853	24782177	Jiang L	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls"	EAS	6q27	6	167119574	1.4164	A	7.00E-15	A	G	0.6573	0.4193	0.5288	0.4692	0.5256	0.52004	A	ANC	morpho	1895
rs1858037	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	2p14	2	65371166	1.11	T	3.00E-15	T	A	0.9077	0.4914	0.2321	0.661	0.3814	0.53472	T	ANC	morpho	79799
rs1877030	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	17q12	17	39583908	1.09	C	2.00E-08	T	C	0.7859	0.7867	0.7629	0.838	0.9274	0.82018	C	ANC	morpho	79799
rs1893592	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	21q22.3	21	42434957	1.11	A	7.00E-12	A	C	0.9697	0.7017	0.7212	0.7237	0.7423	0.77172	A	ANC	morpho	79799
rs1950897	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	14q24.1	14	68293424	1.1	T	8.00E-11	C	T	0.152	0.7147	0.8998	0.6491	0.7791	0.63894	C	DER	morpho	79799
rs1957895	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	14q23.1	14	61441614	1.09	G	4.00E-07	G	T	0.7746	0.134	0.4107	0.0845	0.1207	0.3049	G	ANC	morpho	20965
rs2002842	18668548	Julia A	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"400 European ancestry cases, 400 European ancestry controls"	EUR	18q23	18	78649597	1.61	A	6.00E-06	C	A	0.3011	0.5375	0.8294	0.4324	0.4928	0.51864	C	DER	morpho	800
rs2040406	20453840	Sanna S	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"882 Sardinian cases, 872 Sardinian controls"	EUR	6p21.32	6	32635230	2.05	G	1.00E-20	A	G	0.2935	0.2651	0.1756	0.1928	0.1483	0.21506	A	DER	morpho	1754
rs2075876	21505073	Terao C	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls"	EAS	21q22.3	21	44289270	1.18	A	4.00E-09	G	A	0.3525	0.1744	0.3661	0.1103	0.2536	0.25138	G	DER	morpho	2733
rs2104286	19525953	De Jager PL	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,624 European ancestry cases, 7,220 European ancestry controls"	EUR	10p15.1	10	6057082	1.15	T	9.00E-08	T	C	0.9682	0.8977	0.869	0.7803	0.8078	0.8646	T	ANC	morpho	9844
rs2105325	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	1q25.1	1	173380586	1.12	C	7.00E-13	A	C	0.8956	0.7666	0.8919	0.7545	0.8292	0.82756	A	DER	morpho	79799
rs2228145	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	1q21.3	1	154454494	1.08	A	4.00E-09	A	C	0.913	0.464	0.6766	0.6402	0.7004	0.67884	A	ANC	morpho	79799
rs2230926	20453841	Kochi Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls"	EAS	6q23.3	6	137874929	1.31	G	2.00E-06	T	G	0.4092	0.0778	0.0506	0.0239	0.0297	0.11824	T	DER	morpho	5683
rs2233434	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	6p21.1	6	44265183	1.19	G	6.00E-19	A	G	0.0507	0.0418	0.1657	0.0497	0.0225	0.06608	G	ANC	morpho	20965
rs2280381	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	16q24.1	16	85985027	1.12	T	2.00E-06	C	T	0.612	0.7997	0.8819	0.6451	0.7791	0.74356	C	DER	morpho	20965
rs2293152	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	17q21.2	17	42329511	1.22	C	4.00E-08	G	C	0.888	0.513	0.5198	0.5964	0.6339	0.63022	C	ANC	morpho	17698
rs2300747	19525953	De Jager PL	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,624 European ancestry cases, 7,220 European ancestry controls"	EUR	1p13.1	1	116561593	1.3	A	3.00E-10	A	G	0.7345	0.6657	0.4058	0.8579	0.6145	0.65568	A	ANC	morpho	9844
rs2310173	20062062	Reveille JD	Ankylosing spondylitis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,053 European ancestry cases, 5,140 European ancestry controls"	EUR	2q11.2	2	102047167	1.18	T	5.00E-07	T	G	0.1135	0.4251	0.3135	0.4404	0.3875	0.336	G	DER	morpho	7193
rs231735	19503088	Gregersen PK	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,418 European ancestry cases, 4,504 European ancestry controls"	EUR	2q33.2	2	203829153	1.17	T	6.00E-09	G	T	0.6074	0.562	0.7331	0.4841	0.3548	0.54828	G	DER	morpho	6922
rs2451258	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	6q25.3	6	159085568	1.1	T	3.00E-11	C	T	0.913	0.8285	0.9365	0.6521	0.7751	0.82104	T	ANC	morpho	79799
rs2476601	23055271	Gregersen PK	Myasthenia gravis	"morphological_or_muscular, allergy_autoimmune_immune"	"400 European ancestry cases, 5,505 European ancestry controls"	EUR	1p13.2	1	113834946	1.71	A	8.00E-10	A	G	0.003	0.036	0	0.0944	0.0133	0.02934	G	DER	morpho	5905
rs2476601	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	1p13.2	1	113834946	1.94	A	9.00E-74	A	G	0.003	0.036	0	0.0944	0.0133	0.02934	G	DER	morpho	25708
rs2523393	19525953	De Jager PL	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,624 European ancestry cases, 7,220 European ancestry controls"	EUR	6p22.1	6	29737882	1.28	A	1.00E-17	A	G	0.6778	0.6009	0.5585	0.5398	0.7536	0.62612	G	DER	morpho	9844
rs2546890	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	5q33.3	5	159332892	1.16	A	8.00E-08	A	G	0.3495	0.4121	0.4087	0.4911	0.5634	0.44496	A	ANC	morpho	17698
rs255758	23918589	Negi S	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"706 North Indian ancestry cases, 761 North Indian ancestry controls"	SAS	5q11.2	5	54015672	1.42	C	7.00E-06	C	A	0.3918	0.1931	0.1597	0.2485	0.2495	0.24852	A	DER	morpho	1467
rs2561477	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	5q21.1	5	103273223	1.11	G	2.00E-11	G	A	0.9221	0.8098	0.745	0.6978	0.8425	0.80344	G	ANC	morpho	79799
rs2582532	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	14q32.33	14	104926500	1.18	C	5.00E-08	T	C	0.8593	0.8357	0.7113	0.9901	0.8231	0.8439	C	ANC	morpho	79799
rs26232	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	5q21.1	5	103261019	1.14	C	4.00E-08	C	T	0.6982	0.7939	0.747	0.6988	0.8436	0.7563	C	ANC	morpho	25708
rs2671692	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	10q11.23	10	48889774	1.07	A	3.00E-09	G	A	0.388	0.5922	0.2708	0.6044	0.4397	0.45902	G	DER	morpho	79799
rs2681424	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	3q13.33	3	122050675	1.16	T	2.00E-07	T	C	0.733	0.3127	0.2788	0.494	0.6319	0.49008	T	ANC	morpho	17698
rs2736337	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	8p23.1	8	11484371	1.11	C	3.00E-13	T	C	0.1619	0.487	0.7222	0.2445	0.3497	0.39306	T	DER	morpho	79799
rs2736340	19503088	Gregersen PK	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,418 European ancestry cases, 4,504 European ancestry controls"	EUR	8p23.1	8	11486464	1.19	T	6.00E-09	C	T	0.1188	0.487	0.7212	0.2435	0.3507	0.38424	C	DER	morpho	6922
rs27434	20062062	Reveille JD	Ankylosing spondylitis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,053 European ancestry cases, 5,140 European ancestry controls"	EUR	5q15	5	96793809	1.19	A	5.00E-12	A	G	0.4175	0.2882	0.4544	0.2117	0.3333	0.34102	G	DER	morpho	7193
rs2812378	18794853	Raychaudhuri S	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"3,393 European ancestry cases, 12,460 European ancestry controls"	EUR	9p13.3	9	34710263	1.12	G	3.00E-08	G	A	0.4334	0.2968	0.0704	0.3161	0.3487	0.29308	A	DER	morpho	15853
rs2837960	17554300	WTCCC	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,860 European ancestry cases, 2,938 European ancestry controls"	EUR	21q22.2	21	41139991	1.05	G	2.00E-06	T	G	0.3419	0.1268	0.1667	0.1799	0.1564	0.19434	G	ANC	morpho	4798
rs2841277	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	14q32.33	14	104924668	1.15	T	2.00E-14	C	T	0.2269	0.4928	0.622	0.4771	0.3988	0.44352	T	ANC	morpho	20965
rs2847297	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	18p11.21	18	12797695	1.1	G	2.00E-08	A	G	0.612	0.2507	0.3284	0.3012	0.2832	0.3551	G	ANC	morpho	20965
rs2867461	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	4q21.21	4	78592061	1.13	A	1.00E-12	A	G	0.5333	0.5	0.4345	0.326	0.4325	0.44526	A	ANC	morpho	20965
rs2872507	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	"17q12, 17q21.1"	17	39884510	1.1	A	9.00E-07	G	A	0.2443	0.3516	0.2827	0.4722	0.3129	0.33274	G	DER	morpho	25708
rs3087243	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	2q33.2	2	203874196	1.14	G	3.00E-25	G	A	0.8238	0.6196	0.7371	0.5298	0.3732	0.6167	G	ANC	morpho	79799
rs3093023	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	6q27	6	167120802	1.13	A	2.00E-11	G	A	0.1089	0.3444	0.4296	0.4155	0.3814	0.33596	G	DER	morpho	25708
rs3093024	20453841	Kochi Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls"	EAS	6q27	6	167119305	1.19	A	8.00E-19	A	G	0.3162	0.3732	0.4296	0.4235	0.3834	0.38518	A	ANC	morpho	5683
rs3125734	23028356	Myouzen K	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls"	EAS	10q21.2	10	62198353	1.2	T	5.00E-09	T	C	0.6868	0.2983	0.1002	0.3638	0.4877	0.38736	T	ANC	morpho	5683
rs3129889	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	6p21.32	6	32445768	2.97	G	1.00E-206	G	A	0.0272	0.0533	0.006	0.1203	0.0174	0.04484	A	DER	morpho	17698
rs3129934	22457343	Martinelli-Boneschi F	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"197 European ancestry cases, 234 European ancestry controls"	EUR	6p21.32	6	32368410	2.34	T	7.00E-16	T	C	0.2216	0.121	0.0962	0.1421	0.0808	0.13234	C	DER	morpho	431
rs3130544	23055271	Gregersen PK	Myasthenia gravis	"morphological_or_muscular, allergy_autoimmune_immune"	"400 European ancestry cases, 5,505 European ancestry controls"	EUR	6p21.33	6	31090563	5.64	A	2.00E-90	C	A	0.0091	0.0288	0	0.0815	0	0.02388	C	DER	morpho	5905
rs3135338	20159113	Jakkula E	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"68 Finland founder cases, 136 Finland founder controls"	EUR	6p21.32	6	32433440	3.43	T	2.00E-25	C	T	0.4909	0.6772	0.6944	0.6551	0.6401	0.63154	C	DER	morpho	204
rs3135388	19525953	De Jager PL	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,624 European ancestry cases, 7,220 European ancestry controls"	EUR	6p21.32	6	32445274	2.75	A	4.00E-225	A	G	0.0272	0.0504	0.006	0.1203	0.0174	0.04426	G	DER	morpho	9844
rs3184504	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	12q24.12	12	111446804	1.08	T	6.00E-06	T	C	0.0189	0.2536	0.003	0.4642	0.0685	0.16164	C	DER	morpho	25708
rs3204689	24728293	Styrkarsdottir U	"Osteoarthritis (hand, severe)"	"morphological_or_muscular, allergy_autoimmune_immune"	"623 European ancestry cases, 69,153 European ancestry controls"	EUR	"15q21.3, 15q21.3[rs3204689]; 15q21.3[rs4238326]"	15	57954604	1.46	C	1.00E-11	G	C	0.2171	0.2767	0.1944	0.4553	0.1493	0.25856	G	DER	morpho	69776
rs331463	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	11p12	11	36480237	1.12	T	1.00E-07	A	T	0.4599	0.8919	0.9335	0.8569	0.819	0.79224	A	DER	morpho	79799
rs33980500	20953186	Huffmeier U	Psoriatic arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"572 European ancestry cases, 888 European ancestry controls"	EUR	6q21	6	111592059	1.95	T	1.00E-20	C	T	0.143	0.1196	0.004	0.0855	0.0583	0.08208	C	DER	morpho	1460
rs34536443	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	19p13.2	19	10352442	1.46	G	5.00E-16	G	C	0.9985	0.9798	1	0.9712	0.9939	0.98868	G	ANC	morpho	79799
rs3757837	23989986	Evangelou E	Osteoarthritis (hip)	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 4,734 European ancestry cases, up to 46,903 European ancestry controls"	EUR	7p13	7	44237052	1.27	C	8.00E-10	T	C	0.1831	0.1153	0.1766	0.1203	0.2566	0.17038	C	ANC	morpho	51637
rs3761847	17804836	Plenge RM	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,522 European ancestry cases, 1,850 European ancestry controls"	EUR	9q33.2	9	120927961	1.32	G	4.00E-14	G	A	0.6082	0.3991	0.4802	0.4294	0.318	0.44698	G	ANC	morpho	3372
rs3781913	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	11q13.4	11	72662452	1.12	T	6.00E-10	T	G	0.4183	0.5893	0.6974	0.4334	0.5481	0.5373	G	DER	morpho	20965
rs3783637	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	14q22.2	14	54881400	1.1	C	2.00E-06	C	T	0.8956	0.8458	0.5764	0.9125	0.7311	0.79228	C	ANC	morpho	20965
rs3806624	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	3p24.1	3	27723132	1.08	G	9.00E-09	A	G	0.8752	0.6484	0.8492	0.4672	0.7771	0.72342	G	ANC	morpho	79799
rs3815148	20112360	Kerkhof HJ	Osteoarthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,341 European ancestry cases, 3,496 European ancestry controls"	EUR	7q22.3	7	107297975	1.14	C	8.00E-08	A	C	0.2088	0.1326	0.1577	0.2028	0.1881	0.178	C	ANC	morpho	4837
rs3816587	17554300	WTCCC	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,860 European ancestry cases, 2,938 European ancestry controls"	EUR	4p15.2	4	25415622	1.09	C	9.00E-06	C	T	0.5424	0.4813	0.6944	0.4046	0.5838	0.5413	C	ANC	morpho	4798
rs3890745	18794853	Raychaudhuri S	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"3,393 European ancestry cases, 12,460 European ancestry controls"	EUR	1p36.32	1	2622185	1.12	T	1.00E-07	T	C	0.4183	0.5519	0.4683	0.6909	0.4888	0.52364	C	DER	morpho	15853
rs4149584	19525953	De Jager PL	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,624 European ancestry cases, 7,220 European ancestry controls"	EUR	12p13.31	12	6333477	1.58	T	5.00E-06	C	T	0.0015	0.013	0	0.0189	0	0.00668	C	DER	morpho	9844
rs42041	18794853	Raychaudhuri S	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"3,393 European ancestry cases, 12,460 European ancestry controls"	EUR	7q21.2	7	92617430	1.11	G	4.00E-06	C	G	0.152	0.1816	0.0268	0.2744	0.1135	0.14966	G	ANC	morpho	15853
rs4239702	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	20q13.12	20	46120612	1.13	C	4.00E-18	T	C	0.8623	0.7565	0.5694	0.7127	0.7239	0.72496	T	DER	morpho	79799
rs4552569	22138694	Lin Z	Ankylosing spondylitis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,837 Han Chinese ancestry cases, 4,231 Han Chinese ancestry controls"	EAS	5q14.3	5	83877774	1.21	C	9.00E-10	C	T	0.2194	0.2752	0.255	0.2674	0.1912	0.24164	T	DER	morpho	6068
rs4680534	19525953	De Jager PL	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,624 European ancestry cases, 7,220 European ancestry controls"	EUR	3q25.33	3	159981157	1.12	C	6.00E-06	T	C	0.4841	0.3343	0.1577	0.3539	0.1135	0.2887	C	ANC	morpho	9844
rs4688011	22354554	Thompson SD	Arthritis (juvenile idiopathic)	"morphological_or_muscular, allergy_autoimmune_immune"	"814 European ancestry cases, 658 European ancestry controls, 2,400 controls"	EUR	3q13.33	3	119508400	1.23	A	1.00E-07	G	A	0.0113	0.1571	0.2302	0.2097	0.1656	0.15478	G	DER	morpho	3872
rs4750316	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	10p15.1	10	6351298	1.15	G	2.00E-06	C	G	0.6074	0.879	0.8819	0.8231	0.8108	0.80044	G	ANC	morpho	25708
rs4780401	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	16p13.13	16	11745470	1.09	T	9.00E-09	G	T	0.5424	0.3487	0.4246	0.5934	0.5378	0.48938	T	ANC	morpho	79799
rs4810485	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	20q13.12	20	46119308	1.18	T	3.00E-09	T	G	0.0537	0.2147	0.4405	0.2594	0.2751	0.24868	G	DER	morpho	25708
rs4810485	18794853	Raychaudhuri S	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"3,393 European ancestry cases, 12,460 European ancestry controls"	EUR	20q13.12	20	46119308	1.15	G	8.00E-09	T	G	0.9463	0.7853	0.5595	0.7406	0.7249	0.75132	G	ANC	morpho	15853
rs4937362	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	11q24.3	11	128622844	1.09	T	8.00E-07	T	C	0.6346	0.5245	0.623	0.4026	0.501	0.53714	C	DER	morpho	20965
rs4958881	23055271	Gregersen PK	Myasthenia gravis	"morphological_or_muscular, allergy_autoimmune_immune"	"400 European ancestry cases, 5,505 European ancestry controls"	EUR	5q33.1	5	151070675	1.73	C	3.00E-10	T	C	0.4977	0.1268	0.0645	0.1103	0.0573	0.17132	C	ANC	morpho	5905
rs5009270	23989986	Evangelou E	Osteoarthritis (hip)	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 4,734 European ancestry cases, up to 46,903 European ancestry controls"	EUR	7q31.1	7	112519123	1.1	A	3.00E-06	G	A	0.531	0.2406	0.0903	0.3419	0.3108	0.30292	A	ANC	morpho	51637
rs6074022	19525955	Bahlo	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,618 European ancestry cases, 3,413 European ancestry controls"	EUR	20q13.12	20	46111557	1.2	C	1.00E-07	C	T	0.0234	0.2118	0.4405	0.2575	0.2679	0.24022	T	DER	morpho	5031
rs6094710	23989986	Evangelou E	Osteoarthritis (hip)	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 4,734 European ancestry cases, up to 46,903 European ancestry controls"	EUR	20q13.12	20	47466905	1.28	A	2.00E-10	G	A	0.0726	0.0274	0	0.0278	0.0368	0.03292	G	DER	morpho	51637
rs6479891	22354554	Thompson SD	Arthritis (juvenile idiopathic)	"morphological_or_muscular, allergy_autoimmune_immune"	"814 European ancestry cases, 658 European ancestry controls, 2,400 controls"	EUR	10q21.3	10	63246696	1.19	T	2.00E-07	T	C	0.0144	0.3689	0.3502	0.1521	0.274	0.23192	C	DER	morpho	3872
rs6496667	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	15q26.1	15	90350436	1.09	A	1.00E-06	C	A	0.4607	0.196	0.3472	0.1928	0.3047	0.30028	C	DER	morpho	20965
rs6498169	17660530	Hafler DA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"931 European ancestry trios, 2,431 European ancestry controls"	EUR	16p13.13	16	11155472	1.14	G	4.00E-06	G	A	0.2216	0.5317	0.5605	0.3738	0.2137	0.38026	G	ANC	morpho	3362
rs657075	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	5q31.1	5	132094425	1.12	A	3.00E-10	G	A	0.0121	0.0749	0.3155	0.1252	0.1176	0.12906	G	DER	morpho	20965
rs6604026	19525955	Bahlo	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,618 European ancestry cases, 3,413 European ancestry controls"	EUR	1p22.1	1	92838046	1.17	C	3.00E-06	T	C	0.2685	0.232	0.0099	0.2833	0.135	0.18574	T	DER	morpho	5031
rs6679677	17554300	WTCCC	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,860 European ancestry cases, 2,938 European ancestry controls"	EUR	1p13.2	1	113761186	1.98	A	6.00E-25	C	A	0.0023	0.0303	0	0.0915	0.0133	0.02748	C	DER	morpho	4798
rs6718520	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	2p21	2	43098432	1.17	A	3.00E-08	A	G	0.0567	0.3429	0.2649	0.4672	0.4744	0.32122	G	DER	morpho	17698
rs6719884	23055271	Gregersen PK	Myasthenia gravis	"morphological_or_muscular, allergy_autoimmune_immune"	"400 European ancestry cases, 5,505 European ancestry controls"	EUR	2p16.1	2	58809781	1.35	A	3.00E-06	A	C	0.4402	0.4467	0.5089	0.4215	0.3497	0.4334	A	ANC	morpho	5905
rs67250450	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	7p15.1	7	28135367	1.11	T	3.00E-09	T	C	0.5635	0.5418	0.0327	0.7744	0.456	0.47368	T	ANC	morpho	79799
rs6732565	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	2q13	2	110850255	1.1	A	9.00E-09	A	G	0.674	0.4957	0.5843	0.6243	0.3988	0.55542	A	ANC	morpho	79799
rs6859219	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	5q11.2	5	56142753	1.28	C	1.00E-11	C	A	0.795	0.8631	0.9841	0.7803	0.8957	0.86364	C	ANC	morpho	25708
rs6896969	19525953	De Jager PL	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,624 European ancestry cases, 7,220 European ancestry controls"	EUR	5p13.1	5	40424324	1.1	C	2.00E-07	A	C	0.6112	0.4424	0.1409	0.5865	0.4468	0.44556	C	ANC	morpho	9844
rs6897932	17660530	Hafler DA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"931 European ancestry trios, 2,431 European ancestry controls"	EUR	5p13.2	5	35874473	1.18	C	3.00E-07	C	T	0.9342	0.817	0.8313	0.7286	0.7883	0.81988	C	ANC	morpho	3362
rs6910071	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	"6p21.32, 6p21.32[rs6910071]; 6p21.32[rs3763309]"	6	32315077	2.88	G	1.00E-299	A	G	0.0424	0.2277	0.0516	0.1869	0.0726	0.11624	A	DER	morpho	25708
rs6920220	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	6q23.3	6	137685367	1.22	A	9.00E-13	G	A	0.0991	0.1037	0.004	0.169	0.0982	0.0948	G	DER	morpho	25708
rs6984045	19525955	Bahlo	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,618 European ancestry cases, 3,413 European ancestry controls"	EUR	8q24.21	8	130080167	1.59	C	2.00E-06	T	C	0.0499	0.0216	0	0.0348	0.0082	0.0229	T	DER	morpho	5031
rs703842	19525955	Bahlo	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,618 European ancestry cases, 3,413 European ancestry controls"	EUR	12q14.1	12	57768956	1.23	A	5.00E-11	A	G	0.7005	0.7118	0.3542	0.6799	0.4213	0.57354	G	DER	morpho	5031
rs706778	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	10p15.1	10	6056986	1.14	T	1.00E-11	C	T	0.5008	0.5562	0.5585	0.4135	0.4918	0.50416	T	ANC	morpho	25708
rs7155603	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	14q24.3	14	75494193	1.16	G	1.00E-07	A	G	0.2814	0.281	0.2867	0.1948	0.228	0.25438	A	DER	morpho	25708
rs7169523	23055271	Gregersen PK	Myasthenia gravis	"morphological_or_muscular, allergy_autoimmune_immune"	"400 European ancestry cases, 5,505 European ancestry controls"	EUR	15q13.3	15	31171175	1.4	G	2.00E-06	G	A	0.9728	0.7867	0.378	0.7982	0.6687	0.72088	G	ANC	morpho	5905
rs7191700	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	16p13.13	16	11312946	1.15	C	6.00E-07	C	T	0.8169	0.8112	0.9554	0.662	0.7914	0.80738	T	DER	morpho	17698
rs73013527	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	11q24.3	11	128627057	1.09	C	1.00E-10	C	T	0.9085	0.6095	0.6498	0.4702	0.6319	0.65398	C	ANC	morpho	79799
rs73194058	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	21q22.11	21	33391982	1.13	C	3.00E-08	C	A	0.9962	0.8401	0.5992	0.8569	0.684	0.79528	C	ANC	morpho	79799
rs7404928	22446963	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls"	EAS	16p12.2	16	23877519	1.08	T	4.00E-06	T	C	0.9259	0.7853	0.6419	0.7495	0.5327	0.72706	T	ANC	morpho	20965
rs744166	20159113	Jakkula E	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"68 Finland founder cases, 136 Finland founder controls"	EUR	17q21.2	17	42362183	1.15	G	3.00E-10	A	G	0.7186	0.2867	0.3978	0.4145	0.5112	0.46576	G	ANC	morpho	204
rs7574865	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	"2q32.2, 2q32.3"	2	191099907	1.16	T	3.00E-07	T	G	0.1165	0.3617	0.3472	0.2296	0.2996	0.27092	T	ANC	morpho	25708
rs7592330	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	2p13.3	2	68419651	1.15	A	2.00E-07	G	A	0.4818	0.6873	0.9038	0.5666	0.7382	0.67554	A	ANC	morpho	17698
rs773125	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	12q13.2	12	56001170	1.09	A	1.00E-10	A	G	0.5287	0.6974	0.7649	0.6113	0.7495	0.67036	G	DER	morpho	79799
rs7731626	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	5q11.2	5	56148856	1.21	G	8.00E-23	G	A	0.8381	0.6499	0.8948	0.6223	0.7914	0.7593	G	ANC	morpho	79799
rs7748270	24782177	Jiang L	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls"	EAS	6p21.32	6	32480822	2.01	T	1.00E-16	C	T	0.4342	0.5706	0.494	0.5318	0.4836	0.50284	C	DER	morpho	1895
rs7789940	21654844	Briggs FB	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,470 European ancestry cases"	EUR	7q11.23	7	76321913	1.87	G	6.00E-06	A	G	0.3306	0.2882	0.4454	0.2982	0.184	0.30928	A	DER	morpho	1470
rs8032939	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	15q14	15	38541832	1.13	C	2.00E-18	T	C	0.7405	0.4741	0.5833	0.2416	0.3579	0.47948	C	ANC	morpho	79799
rs8044769	22763110	Loughlin	Osteoarthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"7,410 European ancestry cases, 11,009 European ancestry controls"	EUR	16q12.2	16	53805223	1.07	C	4.00E-06	T	C	0.7905	0.4107	0.6766	0.5278	0.5389	0.5889	C	ANC	morpho	18419
rs8049603	19525955	Bahlo	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,618 European ancestry cases, 3,413 European ancestry controls"	EUR	16p12.2	16	23055939	1.19	T	1.00E-06	T	G	0.0204	0.4524	0.2034	0.2197	0.1667	0.21252	G	DER	morpho	5031
rs805297	21844665	Hu HJ	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"100 Korean ancestry cases, 600 Korean ancestry controls"	EAS	6p21.33	6	31654829	1.56	A	3.00E-10	C	A	0.0174	0.3401	0.3482	0.327	0.3129	0.26912	C	DER	morpho	700
rs8070463	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	17q21.32	17	47691470	1.15	T	1.00E-07	T	C	0.3207	0.5793	0.5605	0.501	0.4908	0.49046	T	ANC	morpho	17698
rs8133843	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	21q22.12	21	35365944	1.08	A	3.00E-09	G	A	0.7345	0.6801	0.5129	0.6252	0.592	0.62894	A	ANC	morpho	79799
rs840016	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	1q24.2	1	167439433	1.11	C	2.00E-06	C	T	0.9576	0.7522	0.9087	0.6163	0.7454	0.79604	C	ANC	morpho	25708
rs874040	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	"4p15.2, 4p15.2[rs874040]; 4p15.2[rs6448432]"	4	26106575	1.14	C	1.00E-16	G	C	0.3442	0.2133	0.003	0.3022	0.1043	0.1934	G	DER	morpho	25708
rs882300	19525953	De Jager PL	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"2,624 European ancestry cases, 7,220 European ancestry controls"	EUR	2q22.1	2	136218685	1.19	C	1.00E-07	T	C	0.7292	0.7666	0.7897	0.6292	0.8027	0.74348	C	ANC	morpho	9844
rs9271366	19525955	Bahlo	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"1,618 European ancestry cases, 3,413 European ancestry controls"	EUR	6p21.32	6	32619077	2.78	G	7.00E-184	G	A	0.1263	0.0663	0.1617	0.1223	0.2566	0.14664	A	DER	morpho	5031
rs9275406	23918589	Negi S	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"706 North Indian ancestry cases, 761 North Indian ancestry controls"	SAS	6p21.32	6	32702178	2.1	T	3.00E-12	G	T	0.3222	0.4135	0.2837	0.3082	0.2239	0.3103	G	DER	morpho	1467
rs934734	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	2p14	2	65368452	1.13	G	5.00E-10	G	A	0.3858	0.4035	0.2341	0.501	0.365	0.37788	A	DER	morpho	25708
rs947474	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	10p15.1	10	6348488	1.12	A	3.00E-10	G	A	0.6936	0.8833	0.879	0.8211	0.8528	0.82596	G	DER	morpho	79799
rs951005	20453842	Stahl EA	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,539 European ancestry cases, 20,169 European ancestry controls"	EUR	9p13.3	9	34743684	1.19	A	4.00E-10	G	A	0.6278	0.8141	0.9335	0.839	0.7802	0.79892	A	ANC	morpho	25708
rs9596270	22190364	Patsopoulos NA	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"5,545 European ancestry cases, 12,153 European ancestry controls"	EUR	13q14.2	13	50268304	1.35	T	7.00E-07	T	C	0.9599	0.9669	0.998	0.9433	0.9591	0.96544	T	ANC	morpho	17698
rs9603616	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	13q14.11	13	39793932	1.1	C	2.00E-12	C	T	0.7655	0.7622	0.7679	0.662	0.7096	0.73344	C	ANC	morpho	79799
rs9657904	20453840	Sanna S	Multiple sclerosis	"morphological_or_muscular, allergy_autoimmune_immune"	"882 Sardinian cases, 872 Sardinian controls"	EUR	3q13.11	3	105867870	1.4	T	2.00E-10	T	C	0.6936	0.7478	0.5317	0.8072	0.7454	0.70514	C	DER	morpho	1754
rs968567	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	11q12.2	11	61828092	1.12	C	2.00E-08	C	T	0.9894	0.9179	1	0.8499	0.9571	0.94286	C	ANC	morpho	79799
rs998731	24390342	Okada Y	Rheumatoid arthritis	"morphological_or_muscular, allergy_autoimmune_immune"	"up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls"	MIX	8q21.13	8	80183160	1.09	T	7.00E-09	C	T	0.9697	0.7017	0.7877	0.4761	0.5879	0.70462	T	ANC	morpho	79799
rs10030601	22949513	EPICURE Consortium	Epilepsy (generalized)	neuroPsycho	"702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls"	EUR	4q31.23	4	149804060	1.58	C	1.00E-06	T	C	0.5567	0.2594	0.3938	0.0686	0.1892	0.29354	C	ANC	neuro	3988
rs10038113	19456320	Ma D	Autism	neuroPsycho	"1,390 European ancestry individuals from 438 families"	EUR	5p14.1	5	25902233	1.33	T	3.00E-06	T	C	0.4395	0.5879	0.3829	0.6213	0.499	0.50612	T	ANC	neuro	1828
rs10065906	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	5q33.3	5	159580770	1.4712	C	5.00E-08	C	A	0.0749	0.389	0.3155	0.2972	0.455	0.30632	G	DER	neuro	2256
rs1006737	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	12p13.33	12	2236129	1.103	A	5.00E-12	G	A	0.5386	0.2824	0.0506	0.3161	0.2382	0.28518	G	DER	neuro	32143
rs1006737	18711365	Ferreira MA	Bipolar disorder	neuroPsycho	"4,387 European ancestry cases, 6,209 European ancestry controls"	EUR	12p13.33	12	2236129	1.18	A	7.00E-08	G	A	0.5386	0.2824	0.0506	0.3161	0.2382	0.28518	G	DER	neuro	10596
rs1012053	17486107	Baum AE	Bipolar disorder	neuroPsycho	"461 European ancestry cases, 563 European ancestry controls"	EUR	13q14.11	13	42079301	1.59	A	2.00E-08	C	A	0.9236	0.696	0.5794	0.8191	0.7648	0.75658	A	ANC	neuro	1024
rs10134944	17554300	WTCCC	Bipolar disorder	neuroPsycho	"1,868 European ancestry cases, 2,938 European ancestry controls"	EUR	14q23.1	14	57652478	1.45	T	7.00E-06	C	T	0.2345	0.0793	0.1597	0.1074	0.1135	0.13888	C	DER	neuro	4806
rs10166942	21666692	Chasman DI	Migraine	neuroPsycho	"5,122 European ancestry cases, 18,108 European ancestry controls"	EUR	2q37.1	2	233916448	1.18	T	6.00E-12	T	C	0.0976	0.7003	0.3671	0.826	0.4969	0.49758	C	DER	neuro	23230
rs10174573	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	2q32.3	2	192877447	1.564	T	2.00E-06	C	T	0.323	0.5086	0.4583	0.5775	0.4836	0.4702	T	ANC	neuro	2256
rs10238623	24047446	Schosser A	Anxiety in major depressive disorder	neuroPsycho	"1,080 European ancestry cases, 442 European ancestry controls"	EUR	"7p14.3, 7p15.1"	7	28772876	1.545	A	5.00E-06	A	G	0.4259	0.3386	0.1607	0.2694	0.2802	0.29496	A	ANC	neuro	1522
rs10263087	22648509	Wang KS	Formal thought disorder in schizophrenia	neuroPsycho	"835 European ancestry cases, 2,694 European ancestry controls"	EUR	7q36.2	7	155178759	1.547	C	7.00E-06	G	C	0.6657	0.8718	0.7966	0.9165	0.8599	0.8221	C	ANC	neuro	3529
rs10265216	20038947	Shyn SI	Major depressive disorder (broad)	neuroPsycho	"3,957 European ancestry cases, 3,428 European ancestry controls"	EUR	7q32.3	7	131215362	1.19	A	3.00E-06	T	A	0.1747	0.4769	0.3046	0.3131	0.4581	0.34548	T	DER	neuro	7385
rs1033962	25456346	Nievergelt CM	Post-traumatic stress disorder	neuroPsycho	"940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls"	MIX	10p12.1	10	24927877	1.43	T	2.00E-09	C	T	0.5794	0.3213	0.2937	0.2376	0.2413	0.33466	C	DER	neuro	3494
rs1035050	19416921	Scott LJ	Bipolar disorder	neuroPsycho	"3,683 European ancestry cases, 14,507 European ancestry controls"	EUR	17q21.33	17	49486650	1.17	T	9.00E-06	T	C	0.9054	0.5865	0.2569	0.5905	0.5123	0.57032	T	ANC	neuro	18190
rs1042779	19416921	Scott LJ	Bipolar disorder	neuroPsycho	"3,683 European ancestry cases, 14,507 European ancestry controls"	EUR	3p21.1	3	52786995	1.19	A	2.00E-07	A	G	0.4607	0.513	0.621	0.6014	0.7004	0.5793	G	DER	neuro	18190
rs1044352	25087078	Anney RJ	Epilepsy	neuroPsycho	"405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls"	MIX	4p15.1	4	31146252	1.14	T	2.00E-07	G	T	0.5416	0.4236	0.5784	0.4364	0.6196	0.51992	T	ANC	neuro	34853
rs10456100	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	6p21.2	6	39215694	1.07	T	5.00E-07	C	T	0.0227	0.2233	0.1687	0.2555	0.3027	0.19458	C	DER	neuro	118710
rs10457838	25456346	Nievergelt CM	Post-traumatic stress disorder	neuroPsycho	"940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls"	MIX	6q25.1	6	149036411	1.14	T	4.26E-06	C	T	0.2352	0.2853	0.2143	0.2624	0.1575	0.23094	C	DER	neuro	3494
rs1046089	23894747	Aberg KA	Schizophrenia	neuroPsycho	"11,185 European ancestry cases, 10,768 European ancestry controls"	EUR	6p21.33	6	31635190	1.3	G	4.00E-06	G	A	0.4569	0.6354	0.6488	0.6551	0.7117	0.62158	G	ANC	neuro	21953
rs10487524	20732626	Mick E	Attention deficit hyperactivity disorder	neuroPsycho	735 trios from 732 families	MIX	7q35	7	145144438	1.6	A	9.00E-06	G	A	0.053	0.1455	0.4702	0.1769	0.3262	0.23436	G	DER	neuro	1467
rs10489202	22037555	Shi Y	Schizophrenia	neuroPsycho	"3,750 Han Chinese ancestry cases, 6,468 Han Chinese ancestry controls"	EAS	1q24.2	1	167933841	1.23	T	1.00E-08	G	T	0.0401	0.3862	0.131	0.2286	0.1585	0.18888	G	DER	neuro	10218
rs10496964	22949513	EPICURE Consortium	Epilepsy (generalized)	neuroPsycho	"702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls"	EUR	2q22.3	2	144602342	1.47	C	9.00E-09	C	T	0.9924	0.9121	0.8274	0.8131	0.728	0.8546	C	ANC	neuro	3988
rs10503253	21926974	Ripke S	Schizophrenia	neuroPsycho	"9,394 European ancestry cases, 12,462 European ancestry controls"	EUR	8p23.2	8	4323322	1.16	A	2.00E-08	C	A	0.0772	0.098	0.3522	0.2167	0.4029	0.2294	A	ANC	neuro	21856
rs10511112	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	3p12.2	3	80319313	1.11	C	5.00E-06	T	C	0.0303	0.0807	0.0903	0.0586	0.0429	0.06056	T	DER	neuro	118710
rs10513789	21738487	Do CB	Parkinson's disease	neuroPsycho	"3,426 European ancestry cases, 29,624 European ancestry controls"	EUR	3q27.1	3	183042285	1.25	T	3.00E-10	T	G	0.8003	0.7003	0.4345	0.8022	0.6738	0.68222	T	ANC	neuro	33050
rs10514718	20125088	Shi J	Major depressive disorder	neuroPsycho	"1,020 European ancestry cases, 1,636 European ancestry controls"	EUR	3p14.2	3	61428140	2.12	C	4.00E-06	C	G	0.9145	0.9352	0.9315	0.9344	0.8446	0.91204	C	ANC	neuro	2656
rs10519005	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	15q22.2	15	59419492	1.26	T	5.00E-06	C	T	0.0923	0.5259	0.3819	0.4354	0.2761	0.34232	T	ANC	neuro	1906
rs10520045	20673876	Rietschel M	Major depressive disorder	neuroPsycho	"597 European ancestry cases, 1,295 European ancestry controls"	EUR	15q14	15	36021764	1.32	T	7.00E-06	G	T	0.264	0.2248	0.3095	0.3101	0.3272	0.28712	G	DER	neuro	1892
rs1064395	21353194	Cichon S	Bipolar disorder	neuroPsycho	"682 European ancestry cases, 1,300 European ancestry controls"	EUR	19p13.11	19	19250926	1.17	A	2.00E-09	G	A	0.4939	0.147	0.1081	0.166	0.2117	0.22534	G	DER	neuro	1982
rs10789369	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	1p31.1	1	73359226	1.095	A	4.00E-10	A	G	0.3071	0.5807	0.2083	0.4205	0.3323	0.36978	G	DER	neuro	32143
rs10797576	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	1q42.2	1	232528865	1.131	T	5.00E-10	C	T	0.0651	0.17	0.1528	0.1382	0.1442	0.13406	C	DER	neuro	108990
rs10810935	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	9p22.2	9	18251857	1.35	A	2.00E-06	A	G	0.9629	0.8415	0.755	0.7187	0.7894	0.8135	A	ANC	neuro	1906
rs10820447	23793025	Anttila V	Migraine with aura	neuroPsycho	"5,118 European ancestry cases, 74,239 European ancestry controls"	EUR	9q22.32	9	96369762	1.16	T	6.00E-06	C	T	0.5446	0.1009	0.0238	0.1471	0.0879	0.18086	C	DER	neuro	79357
rs10826566	23793025	Anttila V	Migraine with aura	neuroPsycho	"5,118 European ancestry cases, 74,239 European ancestry controls"	EUR	10p12.1	10	29075768	1.16	A	4.00E-06	G	A	0.3517	0.1628	0.3631	0.1561	0.2515	0.25704	G	DER	neuro	79357
rs10906466	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10p13	10	13748265	1.06	A	8.00E-06	A	G	0.239	0.4323	0.5456	0.3101	0.454	0.3962	G	DER	neuro	118710
rs10969853	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	9p21.1	9	30751222	1.61	T	5.00E-06	T	C	0.9357	0.902	0.6597	0.9344	0.7904	0.84444	T	ANC	neuro	1906
rs10973956	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	9p13.1	9	38645058	1.23	A	7.00E-06	C	A	0.2352	0.2709	0.0268	0.163	0.2137	0.18192	A	ANC	neuro	8680
rs10988217	23646285	Khor SS	Hypersomnia (HLA-DQB1*06:02 negative)	neuroPsycho	"125 Japanese ancestry cases, 562 Japanese ancestry controls"	EAS	9q34.11	9	129125837	3.85	G	3.00E-06	A	G	0.0651	0.4957	0.2579	0.6203	0.4939	0.38658	A	DER	neuro	687
rs10990268	22889924	Scharf JM	Tourette syndrome	neuroPsycho	"778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls"	EUR	9q31.1	9	102740216	1.29	C	5.00E-06	T	C	0.2118	0.255	0.1944	0.16	0.2955	0.22334	T	DER	neuro	6249
rs10994336	18711365	Ferreira MA	Bipolar disorder	neuroPsycho	"4,387 European ancestry cases, 6,209 European ancestry controls"	EUR	10q21.2	10	60420054	1.45	T	9.00E-09	C	T	0.0098	0.268	0.1944	0.0726	0.1524	0.13944	C	DER	neuro	10596
rs10995245	24204295	Han F	Narcolepsy	neuroPsycho	"1,189 Chinese ancestry cases, 1,997 Chinese ancestry controls"	EAS	10q21.2	10	62631615	1.23	A	1.00E-11	G	A	0.6596	0.6153	0.2778	0.3579	0.5051	0.48314	G	DER	neuro	3186
rs10997517	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	10q21.3	10	67120045	1.14	C	6.00E-06	T	C	0.0045	0.0533	0.001	0.1471	0.0143	0.04404	T	DER	neuro	76534
rs11000137	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10q21.1	10	51922034	1.07	T	3.00E-06	G	T	0.0257	0.134	0.4633	0.2008	0.4029	0.24534	G	DER	neuro	118710
rs11017221	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10q26.3	10	130369801	1.09	T	1.00E-07	C	T	0.1384	0.1369	0.1558	0.1461	0.1125	0.13794	C	DER	neuro	118710
rs11021169	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	11q21	11	95467263	1.3	G	8.00E-06	G	T	0.9917	0.9251	0.8522	0.9245	0.9202	0.92274	G	ANC	neuro	8680
rs11055387	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	12p13.1	12	13367062	2.1853	C	8.00E-06	G	C	0.1452	0.072	0.1052	0.0527	0.0419	0.0834	G	DER	neuro	2256
rs11060180	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	12q24.31	12	122819039	1.105	A	6.00E-12	A	G	0.9327	0.5605	0.7817	0.5646	0.7873	0.72536	A	ANC	neuro	108990
rs1106634	20038947	Shyn SI	Major depressive disorder (broad)	neuroPsycho	"3,957 European ancestry cases, 3,428 European ancestry controls"	EUR	8p21.3	8	20208538	1.3	A	7.00E-07	G	A	0.2405	0.268	0.1399	0.1252	0.2065	0.19602	A	ANC	neuro	7385
rs11074889	20732626	Mick E	Attention deficit hyperactivity disorder	neuroPsycho	735 trios from 732 families	MIX	16p13.13	16	10539308	1.68	A	7.00E-07	A	G	0.2579	0.1599	0.1677	0.1581	0.1452	0.17776	A	ANC	neuro	1467
rs11149058	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	13q22.3	13	76978136	1.22	T	1.00E-06	T	C	0.7474	0.5418	0.6379	0.7823	0.7853	0.69894	C	DER	neuro	8680
rs111577701	25087078	Anney RJ	Epilepsy	neuroPsycho	"405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls"	MIX	3q26.2	3	168143620	1.16	C	4.00E-07	C	T	0.7791	0.9496	0.9782	0.9105	0.9376	0.911	C	ANC	neuro	34853
rs11158026	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	14q22.2	14	54882151	1.11	C	6.00E-11	C	T	0.2761	0.549	0.4494	0.6889	0.5736	0.5074	T	DER	neuro	108990
rs11172113	21666692	Chasman DI	Migraine	neuroPsycho	"5,122 European ancestry cases, 18,108 European ancestry controls"	EUR	12q13.3	12	57133500	1.11	T	4.00E-09	T	C	0.5454	0.464	0.754	0.6213	0.6442	0.60578	C	DER	neuro	23230
rs11189853	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	10q24.2	10	98886424	1.16	G	2.00E-06	A	G	0.0446	0.0461	0.1607	0.0934	0.2045	0.10986	A	DER	neuro	76534
rs11191580	21926974	Ripke S	Schizophrenia	neuroPsycho	"9,394 European ancestry cases, 12,462 European ancestry controls"	EUR	10q24.33	10	103146454	1.2	T	3.00E-08	T	C	0.9939	0.8055	0.7123	0.9125	0.7802	0.84088	T	ANC	neuro	21856
rs11224899	22648509	Wang KS	Formal thought disorder in schizophrenia	neuroPsycho	"835 European ancestry cases, 2,694 European ancestry controls"	EUR	11q21	11	97088525	1.8989	A	2.00E-06	G	A	0.1195	0.0346	0.2341	0.0437	0.0419	0.09476	G	DER	neuro	3529
rs11248051	20711177	Hamza TH	Parkinson's disease	neuroPsycho	"2,000 European ancestry cases, 1,986 European ancestry controls"	EUR	4p16.3	4	864544	1.46	T	3.00E-09	C	T	0.0159	0.0634	0.1032	0.1163	0.2025	0.10026	C	DER	neuro	3986
rs11265461	22479419	Liou YJ	Schizophrenia (treatment resistant)	neuroPsycho	"522 Han Chinese ancestry cases, 806 Han Chinese ancestry controls"	EAS	1q23.3	1	160660353	1.45	C	2.00E-07	T	C	0.4206	0.3761	0.4087	0.3559	0.2045	0.35316	C	ANC	neuro	1328
rs11532322	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	12q24.31	12	123246876	1.094	A	2.00E-08	A	G	0.9009	0.33	0.2579	0.2823	0.2536	0.40494	A	ANC	neuro	32143
rs1154155	24204295	Han F	Narcolepsy	neuroPsycho	"1,189 Chinese ancestry cases, 1,997 Chinese ancestry controls"	EAS	14q11.2	14	22533736	1.64	G	5.00E-49	T	G	0.0424	0.1671	0.5377	0.166	0.2219	0.22702	T	DER	neuro	3186
rs115550680	23571587	Reitz C	Alzheimer's disease (late onset)	neuroPsycho	"1,968 African American cases, 3,928 African American controls"	AFR	19p13.3	19	1050421	1.79	G	2.00E-09	A	G	0.0681	0.0043	0	0	0	0.01448	A	DER	neuro	5896
rs11579964	21042317	Wray NR	Major depressive disorder	neuroPsycho	"2,431 European ancestry cases, 3,673 European ancestry controls"	EUR	1q42.11	1	224351238	1.19	C	4.00E-06	C	T	0.9788	0.902	1	0.8241	0.9632	0.93362	C	ANC	neuro	6104
rs11594111	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10p13	10	14903407	1.09	G	1.00E-07	A	G	0.0144	0.1182	0.002	0.1173	0.0542	0.06122	A	DER	neuro	118710
rs11622475	17554300	WTCCC	Bipolar disorder	neuroPsycho	"1,868 European ancestry cases, 2,938 European ancestry controls"	EUR	14q32.33	14	104042739	1.13	C	8.00E-06	C	T	0.9554	0.7464	0.7123	0.7147	0.5593	0.73762	C	ANC	neuro	4806
rs11636768	21448238	Ligthart L	Migraine	neuroPsycho	"2,116 European ancestry cases, 7,318 European ancestry controls, 330 Dutch founder cases, 1,216 Dutch founder controls"	EUR	15q25.3	15	87152280	1.248	A	5.00E-07	G	A	0.0166	0.0965	0.0476	0.165	0.1319	0.09152	A	ANC	neuro	10980
rs117074560	25056061	Ripke S	Schizophrenia	neuroPsycho	"32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls"	EUR	6q16.1	6	96011775	1.1778563	C	2.00E-09	C	T	0.9962	0.9683	1	0.9622	0.9703	0.9794	C	ANC	neuro	83550
rs11711441	21292315	Nalls MA	Parkinson's disease	neuroPsycho	"5,333 European ancestry cases, 12,019 European ancestry controls"	EUR	3q27.1	3	183103487	1.19	G	8.00E-12	G	A	0.9266	0.9265	0.7897	0.8429	0.8098	0.8591	G	ANC	neuro	17352
rs11724635	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	4p15.32	4	15735478	1.126	A	9.00E-18	C	A	0.1036	0.549	0.3839	0.5596	0.5879	0.4368	A	ANC	neuro	108990
rs11750092	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	5q33.3	5	159940964	1.07	T	7.00E-06	C	T	0.0696	0.072	0.0565	0.174	0.0808	0.09058	C	DER	neuro	118710
rs11754661	20885792	Naj AC	Alzheimer's disease (late onset)	neuroPsycho	"931 cases, 1,104 controls"	MIX	6q25.1	6	150885942	2.1	A	2.00E-10	G	A	8.00E-04	0.0447	0.0357	0.0676	0.0266	0.03508	A	ANC	neuro	2035
rs11757063	22683712	Freilinger T	Migraine	neuroPsycho	"2,326 European ancestry cases, 4,580 European ancestry controls"	EUR	6q16.1	6	96437010	1.2	A	6.00E-08	G	A	0.1029	0.1729	0.0377	0.2068	0.1605	0.13616	G	DER	neuro	6906
rs11759769	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	6q16.1	6	96617336	1.18	A	2.00E-12	G	A	0.1157	0.2032	0.0357	0.2336	0.1534	0.14832	G	DER	neuro	76534
rs11759769	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	6q16.1	6	96617336	1.16	A	4.00E-07	G	A	0.1157	0.2032	0.0357	0.2336	0.1534	0.14832	G	DER	neuro	19147
rs11759769	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	6q16.1	6	96617336	1.1	A	1.00E-11	G	A	0.1157	0.2032	0.0357	0.2336	0.1534	0.14832	G	DER	neuro	118710
rs11777116	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	8p21.2	8	24186788	1.27	T	6.00E-08	C	T	0.0401	0.0793	0.1498	0.0656	0.1196	0.09088	C	DER	neuro	19147
rs117896735	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	10q26.11	10	119776815	1.624	A	4.00E-13	G	A	8.00E-04	0.0029	0	0.0129	0.0041	0.00414	G	DER	neuro	108990
rs11816922	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10p14	10	6882482	1.1	A	5.00E-06	C	A	0.1687	0.0807	0	0.0825	0.0634	0.07906	C	DER	neuro	118710
rs11840092	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	13q21.1	13	57540614	1.37	C	2.00E-06	T	C	0.1225	0.0807	0.3661	0.17	0.1503	0.17792	T	DER	neuro	1906
rs11861787	23962720	Speed D	Epilepsy (remission after treatment)	neuroPsycho	889 European and unknown ancestry epilepsy cases	MIX	16p13.2	16	8467743	1.8868	C	3.00E-06	A	C	0.2557	0.196	0.2302	0.2893	0.1718	0.2286	A	DER	neuro	889
rs11868035	21738487	Do CB	Parkinson's disease	neuroPsycho	"3,426 European ancestry cases, 29,624 European ancestry controls"	EUR	17p11.2	17	17811787	1.18	G	6.00E-08	G	A	0.736	0.5187	0.1647	0.662	0.2832	0.47292	G	ANC	neuro	33050
rs11874712	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	18q21.1	18	46108610	1.15	A	2.00E-07	C	A	0.1657	0.2565	0.0476	0.3897	0.4172	0.25534	C	DER	neuro	19147
rs11890028	22949513	EPICURE Consortium	Epilepsy (generalized)	neuroPsycho	"702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls"	EUR	2q24.3	2	166086767	1.18	T	4.00E-06	T	G	0.8449	0.7911	0.873	0.7107	0.7178	0.7875	G	DER	neuro	3988
rs11906854	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	20q11.22	20	35795712	1.17	G	7.00E-06	A	G	0.2307	0.1542	0.1319	0.1471	0.1759	0.16796	G	ANC	neuro	19147
rs1198588	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	1p21.3	1	98087276	1.1249	T	2.00E-12	A	T	0.702	0.8818	0.9296	0.7704	0.7546	0.80768	A	DER	neuro	32143
rs11995572	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	8q21.3	8	88579854	1.12	T	3.00E-08	G	T	0.444	0.1427	0.1121	0.2008	0.227	0.22532	T	ANC	neuro	32143
rs12006166	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	9q33.1	9	115662708	1.08	T	9.00E-07	A	T	0.0635	0.1268	0.0685	0.1431	0.1339	0.10716	A	DER	neuro	118710
rs12049330	20125088	Shi J	Major depressive disorder	neuroPsycho	"1,020 European ancestry cases, 1,636 European ancestry controls"	EUR	1p13.3	1	109488566	1.44	G	6.00E-06	T	G	0.0219	0.1182	0.2897	0.1501	0.2076	0.1575	T	DER	neuro	2656
rs12059546	22949513	EPICURE Consortium	Epilepsy (generalized)	neuroPsycho	"702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls"	EUR	1q43	1	239806797	1.42	G	4.00E-08	A	G	0.5749	0.2478	0.3224	0.1928	0.2055	0.30868	A	DER	neuro	3988
rs12134493	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	1p13.2	1	115135325	1.18	A	5.00E-08	C	A	0.0234	0.0865	0.0685	0.1093	0.0869	0.07492	C	DER	neuro	76534
rs12134493	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	1p13.2	1	115135325	1.14	A	5.00E-14	C	A	0.0234	0.0865	0.0685	0.1093	0.0869	0.07492	C	DER	neuro	118710
rs12140439	23894747	Aberg KA	Schizophrenia	neuroPsycho	"11,185 European ancestry cases, 10,768 European ancestry controls"	EUR	1q25.2	1	177753772	1.3	C	1.00E-06	C	A	0.9516	0.6801	0.9048	0.669	0.7137	0.78384	C	ANC	neuro	21953
rs12153243	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	5q31.3	5	143520236	1.05	T	6.00E-06	A	T	0.354	0.2392	0.2024	0.3757	0.2853	0.29132	A	DER	neuro	118710
rs12185268	21738487	Do CB	Parkinson's disease	neuroPsycho	"3,426 European ancestry cases, 29,624 European ancestry controls"	EUR	17q21.31	17	45846317	1.3	A	3.00E-14	A	G	0.9849	0.8415	0.999	0.7604	0.9387	0.9049	G	DER	neuro	33050
rs12210761	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	6p24.3	6	10175803	2.4458	A	6.00E-06	G	A	0.0318	0.0202	0.0456	0.0308	0.0419	0.03406	G	DER	neuro	2256
rs1223271	19915575	Simon-Sanchez J	Parkinson's disease	neuroPsycho	"1,713 European ancestry cases, 3,978 European ancestry controls"	EUR	20p12.1	20	13316265	1.18	G	5.00E-06	G	A	0.9962	0.8401	0.5784	0.8668	0.6708	0.79046	G	ANC	neuro	5691
rs12290811	18711365	Ferreira MA	Bipolar disorder	neuroPsycho	"4,387 European ancestry cases, 6,209 European ancestry controls"	EUR	11q14.1	11	79372576	1.2	A	4.00E-06	T	A	0.2837	0.0937	0.0774	0.1561	0.0378	0.12974	T	DER	neuro	10596
rs12348435	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	9p21.1	9	28600144	1.59	C	2.00E-06	A	C	0.1899	0.0605	0.0377	0.0577	0.0389	0.07694	A	DER	neuro	1906
rs12352279	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	9p24.3	9	678837	1.25	C	3.00E-06	T	C	0.3268	0.2522	0.3323	0.0855	0.1984	0.23904	T	DER	neuro	19147
rs12355831	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10q25.2	10	112442768	1.09	G	2.00E-06	A	G	0.0651	0.0403	0.0139	0.0845	0.0348	0.04772	A	DER	neuro	118710
rs12410462	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	1q42.13	1	227480089	1.259	A	4.00E-07	G	A	0.1271	0.1383	0.1399	0.1213	0.1769	0.1407	G	DER	neuro	2256
rs12431733	19915575	Simon-Sanchez J	Parkinson's disease	neuroPsycho	"1,713 European ancestry cases, 3,978 European ancestry controls"	EUR	14q22.2	14	53824112	1.13	T	3.00E-06	T	C	0.6475	0.6239	0.8323	0.4712	0.684	0.65178	T	ANC	neuro	5691
rs12436436	18711365	Ferreira MA	Bipolar disorder	neuroPsycho	"4,387 European ancestry cases, 6,209 European ancestry controls"	EUR	14q11.2	14	23912306	1.3	C	5.00E-06	T	C	0.2126	0.0937	0.1935	0.0905	0.1053	0.13912	C	ANC	neuro	10596
rs12446956	21042317	Wray NR	Major depressive disorder	neuroPsycho	"2,431 European ancestry cases, 3,673 European ancestry controls"	EUR	16q22.3	16	73467637	1.22	C	1.00E-06	T	C	0.0083	0.1081	0.246	0.1103	0.2955	0.15364	T	DER	neuro	6104
rs12456492	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	18q12.3	18	43093415	1.11	G	8.00E-12	A	G	0.3124	0.3516	0.3601	0.338	0.2975	0.33192	G	ANC	neuro	108990
rs12457996	21042317	Wray NR	Major depressive disorder	neuroPsycho	"2,431 European ancestry cases, 3,673 European ancestry controls"	EUR	18q12.3	18	43292308	1.15	T	6.00E-06	T	C	0.882	0.8285	0.998	0.7694	0.8804	0.87166	T	ANC	neuro	6104
rs12480819	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	20p12.1	20	17611655	1.15	G	3.00E-06	A	G	0.3374	0.2968	0.5992	0.2107	0.453	0.37942	A	DER	neuro	19147
rs12500612	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	4p15.2	4	24739335	1.7665	G	7.00E-06	G	T	0.9168	0.9092	0.999	0.8449	0.9141	0.9168	G	ANC	neuro	2256
rs12513663	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	5q23.2	5	124496959	1.184	T	2.00E-06	C	T	0.0431	0.3746	0.6131	0.2813	0.499	0.36222	C	DER	neuro	2256
rs12552369	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	9q34.13	9	132757106	1.155	A	8.00E-06	G	A	0.034	0.5101	0.3264	0.506	0.4642	0.36814	G	DER	neuro	2256
rs12591257	23594818	Ikeda M	Psychosis (methamphetamine induced)	neuroPsycho	"193 East Asian ancestry methamphetamine-dependent cases, 41 East Asian ancestry methamphetamine-dependent controls"	EAS	15q25.3	15	86520858	5.26	A	4.00E-06	A	C	0.9992	0.9885	0.9415	0.9602	0.9836	0.9746	A	ANC	neuro	234
rs1261117	23894747	Aberg KA	Schizophrenia	neuroPsycho	"11,185 European ancestry cases, 10,768 European ancestry controls"	EUR	18q21.2	18	55282426	1.6	T	3.00E-10	T	C	0.7073	0.9524	0.9931	0.9404	0.8937	0.89738	C	DER	neuro	21953
rs12611334	23894747	Aberg KA	Schizophrenia	neuroPsycho	"11,185 European ancestry cases, 10,768 European ancestry controls"	EUR	19q13.2	19	39738769	1.4	G	2.00E-06	C	G	0.1936	0.1801	0.1696	0.333	0.317	0.23866	C	DER	neuro	21953
rs12637471	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	3q27.1	3	183044649	1.1876	G	2.00E-21	G	A	0.7073	0.6888	0.4365	0.8022	0.6728	0.66152	G	ANC	neuro	108990
rs12681963	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	8p12	8	30125002	1.11	T	2.00E-07	T	C	0.3011	0.121	0.2351	0.1292	0.1309	0.18346	C	DER	neuro	118710
rs12720541	22949513	EPICURE Consortium	Epilepsy (generalized)	neuroPsycho	"702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls"	EUR	1q31.1	1	186900940	1.21	T	9.00E-06	G	T	0.211	0.4971	0.1399	0.2624	0.3865	0.29938	G	DER	neuro	3988
rs12744221	23962720	Speed D	Epilepsy (remission after treatment)	neuroPsycho	889 European and unknown ancestry epilepsy cases	MIX	1q21.1	1	145789475	1.66	C	6.00E-06	C	T	0.9168	0.6671	0.8442	0.6382	0.7873	0.77072	C	ANC	neuro	889
rs12807809	19571808	Stefansson H	Schizophrenia	neuroPsycho	"2,663 European ancestry cases, 13,498 European ancestry controls"	EUR	11q24.2	11	124736389	1.15	T	2.00E-09	T	C	0.7231	0.8617	0.7083	0.83	0.9039	0.8054	C	DER	neuro	16161
rs12817488	21292315	Nalls MA	Parkinson's disease	neuroPsycho	"5,333 European ancestry cases, 12,019 European ancestry controls"	EUR	12q24.31	12	122811747	1.14	A	3.00E-13	G	A	0.2458	0.4481	0.5466	0.4473	0.456	0.42876	G	DER	neuro	17352
rs12826178	25056061	Ripke S	Schizophrenia	neuroPsycho	"32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls"	EUR	12q13.3	12	57228588	1.1820331	G	2.00E-12	G	T	0.9962	0.964	1	0.9254	0.9652	0.97016	G	ANC	neuro	83550
rs12922317	23358160	Borglum AD	Schizophrenia	neuroPsycho	"888 European ancestry cases, 882 European ancestry controls"	EUR	16p13.13	16	11983775	1.174	G	9.00E-07	A	G	0.2988	0.3228	0.6379	0.3221	0.545	0.42532	A	DER	neuro	1770
rs12959570	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	18q21.31	18	56666353	1.2	G	4.00E-06	G	A	0.8805	0.2579	0.3641	0.2286	0.3006	0.40634	A	DER	neuro	8680
rs12966547	21926974	Ripke S	Schizophrenia	neuroPsycho	"9,394 European ancestry cases, 12,462 European ancestry controls"	EUR	18q21.2	18	55084786	1.4	G	3.00E-08	G	A	0.6831	0.5893	0.4018	0.6143	0.7188	0.60146	A	DER	neuro	21856
rs12991836	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	2q22.3	2	144383974	1.08	C	1.00E-08	A	C	0.1195	0.3631	0.5208	0.3718	0.2219	0.31942	A	DER	neuro	32143
rs13026414	22949513	EPICURE Consortium	Epilepsy (generalized)	neuroPsycho	"702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls"	EUR	2p16.1	2	57706920	1.23	C	2.00E-09	C	T	0.9554	0.647	0.8135	0.6143	0.7495	0.75594	C	ANC	neuro	3988
rs13160562	19581569	Treutlein J	Alcohol dependence	neuroPsycho	"476 European ancestry cases, 1,358 European ancestry controls"	EUR	5q15	5	96775667	1.27	G	7.00E-06	G	A	0.9168	0.8127	0.9375	0.673	0.862	0.8404	G	ANC	neuro	1834
rs13194053	19571809	Shi J	Schizophrenia	neuroPsycho	"2,681 European ancestry cases, 2,653 European ancestry controls, 1,286 African American cases, 973 African American controls"	MIX	6p22.1	6	27176104	1.28	T	1.00E-08	T	C	0.8616	0.8948	0.9921	0.8588	0.9172	0.9049	T	ANC	neuro	7593
rs13196614	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	"6q24.3, 6q25.1"	6	148602653	1.08	T	5.00E-06	G	T	0.0061	0.1138	0.0516	0.163	0.047	0.0763	G	DER	neuro	118710
rs13263568	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	8q13.3	8	71535183	1.1	G	2.00E-06	T	G	0.0091	0.062	0.12	0.0775	0.1472	0.08316	T	DER	neuro	118710
rs13409348	19416921	Scott LJ	Bipolar disorder	neuroPsycho	"3,683 European ancestry cases, 14,507 European ancestry controls"	EUR	2p12	2	79312862	1.2	G	3.00E-06	G	C	0.5356	0.7723	0.8254	0.7644	0.7975	0.73904	C	DER	neuro	18190
rs1344706	18677311	O'Donovan MC	Schizophrenia	neuroPsycho	"479 European ancestry cases, 2,937 European ancestry controls"	EUR	2q32.1	2	184913701	1.12	A	2.00E-07	A	C	0.9599	0.6657	0.4831	0.6223	0.6534	0.67688	A	ANC	neuro	3416
rs1362153	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	1p34.1	1	44003359	1.47	C	7.00E-06	T	C	0.5976	0.17	0.1696	0.1103	0.137	0.2369	C	ANC	neuro	1906
rs14235	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	16p11.2	16	31110472	1.103	A	2.00E-12	G	A	0.0893	0.3833	0.8849	0.3817	0.1421	0.37626	G	DER	neuro	108990
rs143536437	23962720	Speed D	Epilepsy (remission after treatment)	neuroPsycho	889 European and unknown ancestry epilepsy cases	MIX	15q13.2	15	30606129	1.73	C	3.00E-06	C	T	0.82	0.8329	0.9861	0.7664	0.9018	0.86144	C	ANC	neuro	889
rs14403	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	"1q43, 1q44"	1	243500591	1.1	C	2.00E-08	C	T	0.9463	0.8343	0.7431	0.7932	0.7986	0.8231	C	ANC	neuro	32143
rs1457614	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	12p13.1	12	13488772	1.4652	C	8.00E-06	C	A	0.4365	0.1844	0.1964	0.1998	0.2352	0.25046	A	DER	neuro	2256
rs145848414	23571587	Reitz C	Alzheimer's disease (late onset)	neuroPsycho	"1,968 African American cases, 3,928 African American controls"	AFR	5q35.2	5	174587111	2.29	A	7.00E-08	G	A	0.0416	0.0043	0	0	0	0.00918	G	DER	neuro	5896
rs1474055	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	2q24.3	2	168253884	1.214	T	1.00E-20	C	T	0.1657	0.2334	0.3284	0.1193	0.1769	0.20474	C	DER	neuro	108990
rs1485395	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	12q13.13	12	53601293	1.13	C	7.00E-06	T	C	0.1672	0.1455	0.2619	0.1759	0.1299	0.17608	T	DER	neuro	76534
rs149183310	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	3q13.31	3	116214742	1.52	T	2.00E-06	A	T	0.003	0.0288	0.001	0.0636	0.0143	0.02214	A	DER	neuro	8680
rs1491942	21292315	Nalls MA	Parkinson's disease	neuroPsycho	"5,333 European ancestry cases, 12,019 European ancestry controls"	EUR	12q12	12	40227006	1.27	G	6.00E-14	C	G	0.2769	0.3084	0.374	0.1859	0.3558	0.3002	G	ANC	neuro	17352
rs1525293	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	7q11.22	7	71008019	1.7041	C	2.00E-06	C	T	0.8585	0.6066	0.5456	0.6372	0.6922	0.66802	C	ANC	neuro	2256
rs1538774	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	1q43	1	243381525	1.09	G	3.00E-08	C	G	0.77	0.8458	0.9732	0.7326	0.6646	0.79724	G	ANC	neuro	32143
rs1555399	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	14q24.1	14	67517653	1.1148	T	7.00E-14	T	A	0.7572	0.5029	0.5308	0.5358	0.6319	0.59172	T	ANC	neuro	108990
rs1564282	18985386	Pankratz N	Parkinson's disease (familial)	neuroPsycho	"1,119 European ancestry cases, 1,127 European ancestry controls"	EUR	4p16.3	4	858525	1.7	T	7.00E-07	C	T	0.0068	0.0634	0.1032	0.1163	0.2025	0.09844	C	DER	neuro	2246
rs1602565	18677311	O'Donovan MC	Schizophrenia	neuroPsycho	"479 European ancestry cases, 2,937 European ancestry controls"	EUR	11p14.1	11	29140589	1.16	C	3.00E-06	T	C	0.0182	0.1888	0.1329	0.1064	0.1472	0.1187	T	DER	neuro	3416
rs1612122	20038947	Shyn SI	Major depressive disorder (broad)	neuroPsycho	"3,957 European ancestry cases, 3,428 European ancestry controls"	EUR	10p12.1	10	29002969	1.17	T	7.00E-06	A	T	0.4047	0.4539	0.3442	0.5129	0.4663	0.4364	A	DER	neuro	7385
rs1625579	21926974	Ripke S	Schizophrenia	neuroPsycho	"9,394 European ancestry cases, 12,462 European ancestry controls"	EUR	1p21.3	1	98037378	1.12	T	2.00E-11	G	T	0.6694	0.8862	0.9296	0.7893	0.7771	0.81032	G	DER	neuro	21856
rs166040	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	5q31.3	5	141831188	1.6054	G	5.00E-06	A	G	0.6997	0.7262	0.8333	0.8817	0.7996	0.7881	G	ANC	neuro	2256
rs1660895	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	2q21.1	2	129236759	1.3	A	7.00E-07	A	T	0.3797	0.536	0.745	0.4642	0.5562	0.53622	A	ANC	neuro	1906
rs16824395	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	3q13.31	3	116021872	1.92	A	6.00E-06	A	G	0.9985	0.9841	0.622	0.9235	0.9008	0.88578	A	ANC	neuro	1906
rs16826005	23646285	Khor SS	Hypersomnia (HLA-DQB1*06:02 negative)	neuroPsycho	"125 Japanese ancestry cases, 562 Japanese ancestry controls"	EAS	2q21.2	2	133508430	3.52	G	1.00E-07	A	G	0.1271	0.0821	0.3185	0.0417	0.045	0.12288	A	DER	neuro	687
rs16867576	25056061	Ripke S	Schizophrenia	neuroPsycho	"32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls"	MIX	5q14.3	5	89450514	1.101	A	5.00E-09	A	G	0.6558	0.9035	0.9692	0.8897	0.8947	0.86258	A	ANC	neuro	83550
rs16897515	23894747	Aberg KA	Schizophrenia	neuroPsycho	"11,185 European ancestry cases, 10,768 European ancestry controls"	EUR	6p22.1	6	27310241	1.3	C	4.00E-07	C	A	0.7557	0.853	0.9712	0.832	0.8978	0.86194	C	ANC	neuro	21953
rs16897978	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	5p14.1	5	28696397	1.53	C	5.00E-06	C	A	0.3192	0.1816	0.6349	0.0706	0.1288	0.26702	C	ANC	neuro	1906
rs16904191	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	8q24.21	8	130021250	1.07	G	2.00E-07	A	G	0.4902	0.3602	0.627	0.3191	0.5266	0.46462	A	DER	neuro	118710
rs16966389	23646285	Khor SS	Hypersomnia (HLA-DQB1*06:02 negative)	neuroPsycho	"125 Japanese ancestry cases, 562 Japanese ancestry controls"	EAS	15q14	15	38172673	2.73	G	7.00E-07	G	A	0.9289	0.8847	0.6647	0.998	0.8978	0.87482	G	ANC	neuro	687
rs16966460	18711365	Ferreira MA	Bipolar disorder	neuroPsycho	"4,387 European ancestry cases, 6,209 European ancestry controls"	EUR	15q14	15	38219782	1.26	G	4.00E-06	C	G	0.0492	0.1988	0.1329	0.1054	0.1708	0.13142	C	DER	neuro	10596
rs16985493	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	20q13.33	20	61718507	1.37	A	4.00E-06	G	A	0.084	0.0548	0	0.0547	0.0031	0.03932	G	DER	neuro	19147
rs1706631	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	12p12.3	12	17509301	1.3548	T	6.00E-06	A	T	0.5265	0.6124	0.7143	0.3956	0.6779	0.58534	A	DER	neuro	2256
rs17077540	20125088	Shi J	Major depressive disorder	neuroPsycho	"1,020 European ancestry cases, 1,636 European ancestry controls"	EUR	18q22.1	18	67618042	1.61	G	2.00E-07	A	G	0.0537	0.0793	0.1101	0.1213	0.0532	0.08352	A	DER	neuro	2656
rs17082664	18711365	Ferreira MA	Bipolar disorder	neuroPsycho	"4,387 European ancestry cases, 6,209 European ancestry controls"	EUR	6q25.2	6	152417619	1.22	G	4.00E-06	A	G	0.2595	0.1254	0.3641	0.1461	0.1554	0.2101	A	DER	neuro	10596
rs17115100	19915575	Simon-Sanchez J	Parkinson's disease	neuroPsycho	"1,713 European ancestry cases, 3,978 European ancestry controls"	EUR	10q24.32	10	102831636	1.25	G	7.00E-08	G	T	0.9516	0.7983	0.6528	0.9066	0.7423	0.81032	G	ANC	neuro	5691
rs1712517	22683712	Freilinger T	Migraine	neuroPsycho	"2,326 European ancestry cases, 4,580 European ancestry controls"	EUR	10q24.33	10	103273258	1.13	T	9.00E-06	C	T	0.5946	0.4697	0.4762	0.498	0.6953	0.54676	T	ANC	neuro	6906
rs17125944	24162737	European Alzheimer's Disease Initiative (EADI)	Alzheimer's disease (late onset)	neuroPsycho	"17,008 European ancestry cases, 37,154 European ancestry controls"	EUR	14q22.1	14	52933911	1.14	C	8.00E-09	T	C	0.0499	0.1167	0.2272	0.0805	0.1012	0.1151	T	DER	neuro	54162
rs17144465	20125088	Shi J	Major depressive disorder	neuroPsycho	"1,020 European ancestry cases, 1,636 European ancestry controls"	EUR	7p15.3	7	21464809	1.82	G	6.00E-06	A	G	0.2738	0.3386	0.6379	0.0398	0.2086	0.29974	A	DER	neuro	2656
rs17144465	20038947	Shyn SI	Major depressive disorder (broad)	neuroPsycho	"3,957 European ancestry cases, 3,428 European ancestry controls"	EUR	7p15.3	7	21464809	1.56	G	8.00E-07	A	G	0.2738	0.3386	0.6379	0.0398	0.2086	0.29974	A	DER	neuro	7385
rs171748	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	5q12.1	5	61203304	1.078	A	4.00E-08	A	G	0.2012	0.4914	0.2143	0.4344	0.5409	0.37644	G	DER	neuro	32143
rs17303101	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	9q33.1	9	116419515	1.07	A	4.00E-07	G	A	0.27	0.2219	0.1171	0.3082	0.1892	0.22128	G	DER	neuro	118710
rs17362650	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	2p25.1	2	9536284	1.33	C	8.00E-06	T	C	0.0734	0.1715	0.002	0.3191	0.229	0.159	T	DER	neuro	1906
rs17418283	19416921	Scott LJ	Bipolar disorder	neuroPsycho	"3,683 European ancestry cases, 14,507 European ancestry controls"	EUR	5q15	5	94818883	1.21	C	1.00E-07	T	C	0.0174	0.2061	0.0675	0.2903	0.2035	0.15696	T	DER	neuro	18190
rs17470570	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	10q24.2	10	98820366	1.2	G	3.00E-06	A	G	0.0038	0.0173	0.001	0.0398	0.0358	0.01954	A	DER	neuro	76534
rs17504622	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	5q33.1	5	153274919	1.238	T	3.00E-09	C	T	0.0015	0.0173	0	0.0338	0.0072	0.01196	C	DER	neuro	32143
rs17512836	21926974	Ripke S	Schizophrenia	neuroPsycho	"9,394 European ancestry cases, 12,462 European ancestry controls"	EUR	18q21.2	18	55527730	1.23	C	1.00E-06	T	C	0	0.0274	0	0.0328	0	0.01204	T	DER	neuro	21856
rs17570583	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	5q35.1	5	172132527	1.23	A	9.00E-06	G	A	0.0061	0.0605	0.001	0.1123	0.1544	0.06686	G	DER	neuro	19147
rs17594526	19571811	Purcell SM	Schizophrenia	neuroPsycho	"3,322 European ancestry cases, 3,587 European ancestry controls"	EUR	18q21.2	18	55391007	1.44	T	1.00E-07	C	T	0.1725	0.0375	0	0.0328	0	0.04856	C	DER	neuro	6909
rs17608902	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	5q23.3	5	128380874	1.25	A	1.00E-07	C	A	0.0204	0.0504	0.0675	0.0915	0.0378	0.05352	C	DER	neuro	19147
rs17608902	23793025	Anttila V	Migraine with aura	neuroPsycho	"5,118 European ancestry cases, 74,239 European ancestry controls"	EUR	5q23.3	5	128380874	1.19	A	9.00E-06	C	A	0.0204	0.0504	0.0675	0.0915	0.0378	0.05352	C	DER	neuro	79357
rs17625382	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	10q21.1	10	57812948	1.41	G	3.00E-06	G	A	0.9849	0.9006	0.999	0.8101	0.9049	0.9199	G	ANC	neuro	1906
rs17634917	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	19q13.42	19	55754298	1.371	A	3.00E-06	A	G	0.9962	0.9726	1	0.9354	0.9888	0.9786	A	ANC	neuro	2256
rs17649553	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	17q21.31	17	45917282	1.3	C	2.00E-48	C	T	0.9849	0.8429	0.999	0.7594	0.9376	0.90476	T	DER	neuro	108990
rs17651119	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	5p15.1	5	16812529	3.1807	C	2.00E-08	C	T	0.9985	0.8991	0.7897	0.9851	0.9673	0.92794	C	ANC	neuro	2256
rs17662626	21926974	Ripke S	Schizophrenia	neuroPsycho	"9,394 European ancestry cases, 12,462 European ancestry controls"	EUR	2q32.3	2	193119895	1.2	A	5.00E-08	A	G	0.9955	0.8429	1	0.9105	0.9796	0.9457	A	ANC	neuro	21856
rs17675602	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	16q23.3	16	82929158	1.21	T	5.00E-06	A	T	0.0061	0.0778	0	0.1332	0.0112	0.04566	A	DER	neuro	19147
rs17691888	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	10p12.31	10	18445599	1.16	G	1.00E-10	G	A	0.9758	0.7911	0.9127	0.8787	0.907	0.89306	G	ANC	neuro	32143
rs17710780	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	5q32	5	149657413	1.662	T	4.00E-06	T	C	0.9962	0.83	0.9315	0.8588	0.8384	0.89098	T	ANC	neuro	2256
rs17770015	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	10q25.3	10	113479005	1.17	G	3.00E-06	C	G	0.0325	0.0375	0.0099	0.0934	0.0992	0.0545	C	DER	neuro	76534
rs1822818	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	4q21.22	4	81541443	1.7737	T	6.00E-06	T	C	0.7988	0.6484	0.9048	0.834	0.82	0.8012	T	ANC	neuro	2256
rs1835740	20802479	Anttila V	Migraine	neuroPsycho	"2,731 European ancestry cases, 10,747 European ancestry controls"	EUR	8q22.1	8	97154685	1.18	T	2.00E-11	T	C	0.2549	0.2233	0.6181	0.2217	0.4294	0.34948	C	DER	neuro	13478
rs1861960	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	7q36.3	7	155492440	1.07	T	6.00E-06	T	G	0.2988	0.2911	0.6548	0.2316	0.2822	0.3517	T	ANC	neuro	118710
rs1864982	19581569	Treutlein J	Alcohol dependence	neuroPsycho	"476 European ancestry cases, 1,358 European ancestry controls"	EUR	5q32	5	146941260	1.36	T	3.00E-06	G	T	0.413	0.1974	0.2599	0.1153	0.2147	0.24006	G	DER	neuro	1834
rs1874252	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	15q14	15	38670555	1.32	G	7.00E-06	G	T	0.6725	0.8213	0.9276	0.7256	0.7894	0.78728	G	ANC	neuro	1906
rs1890185	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10q24.32	10	102988961	1.06	G	4.00E-07	A	G	0.3343	0.415	0.5853	0.4175	0.4826	0.44694	G	ANC	neuro	118710
rs1890566	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	1p32.3	1	54202605	1.06	G	8.00E-07	A	G	0.1687	0.3084	0.2589	0.4493	0.2894	0.29494	A	DER	neuro	118710
rs1896857	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	2q33.1	2	197299806	1.3	A	8.00E-06	A	G	0.6982	0.585	0.5	0.7058	0.6503	0.62786	G	DER	neuro	1906
rs1939012	25087078	Anney RJ	Epilepsy	neuroPsycho	"405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls"	MIX	11q22.2	11	102724404	1.12	T	2.00E-08	T	C	0.2368	0.4784	0.4315	0.4533	0.4018	0.40036	T	ANC	neuro	34853
rs199347	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	7p15.3	7	23254127	1.11	A	1.00E-12	A	G	0.0416	0.6037	0.7163	0.6173	0.6166	0.5191	G	DER	neuro	108990
rs199498	24511991	Hill-Burns EM	Parkinson's disease	neuroPsycho	"1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls"	EUR	17q21.31	17	46788237	1.69	T	8.00E-07	T	C	0.9062	0.6138	0.4514	0.7753	0.8773	0.7248	C	DER	neuro	3986
rs199533	19915575	Simon-Sanchez J	Parkinson's disease	neuroPsycho	"1,713 European ancestry cases, 3,978 European ancestry controls"	EUR	17q21.31	17	46751565	1.28	G	1.00E-14	G	A	0.9894	0.8487	0.999	0.7773	0.9468	0.91224	G	ANC	neuro	5691
rs2021722	21926974	Ripke S	Schizophrenia	neuroPsycho	"9,394 European ancestry cases, 12,462 European ancestry controls"	EUR	6p22.1	6	30206354	1.15	C	2.00E-12	C	T	0.6014	0.8429	0.8909	0.8171	0.7434	0.77914	T	DER	neuro	21856
rs2074193	23793025	Anttila V	Migraine with aura	neuroPsycho	"5,118 European ancestry cases, 74,239 European ancestry controls"	EUR	12q13.11	12	47377646	1.15	G	5.00E-07	T	G	0.143	0.2493	0.0506	0.2416	0.2566	0.18822	G	ANC	neuro	79357
rs2102808	21292315	Nalls MA	Parkinson's disease	neuroPsycho	"5,333 European ancestry cases, 12,019 European ancestry controls"	EUR	2q24.3	2	168260515	1.18	G	4.00E-10	G	T	0.8086	0.7666	0.6706	0.8787	0.8221	0.78932	G	ANC	neuro	17352
rs2111504	19488044	Smith EN	Bipolar disorder	neuroPsycho	"1,001 European ancestry cases, 1,033 European ancestry controls, 345 African American cases, 670 African American controls"	MIX	19q13.11	19	32426549	1.74	T	2.00E-06	T	A	0.7413	0.8069	0.881	0.838	0.8415	0.82174	T	ANC	neuro	3049
rs2125000	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	4q28.1	4	124344158	1.425	T	3.00E-06	C	T	0.0257	0.2435	0.2877	0.2952	0.2658	0.22358	C	DER	neuro	2256
rs2137920	23793025	Anttila V	Migraine with aura	neuroPsycho	"5,118 European ancestry cases, 74,239 European ancestry controls"	EUR	10q11.23	10	49021593	1.15	T	1.00E-06	T	A	0.6377	0.2896	0.3581	0.2127	0.5573	0.41108	T	ANC	neuro	79357
rs216345	18711365	Ferreira MA	Bipolar disorder	neuroPsycho	"4,387 European ancestry cases, 6,209 European ancestry controls"	EUR	9p13.3	9	33799372	1.15	T	4.00E-06	T	C	0.4024	0.3545	0.244	0.3688	0.3313	0.3402	T	ANC	neuro	10596
rs2168784	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	3q26.1	3	164872151	1.46	T	5.00E-09	C	T	0.618	0.1023	0.0942	0.0964	0.1299	0.20816	T	ANC	neuro	1906
rs2237457	25223841	Li J	Schizophrenia (treatment resistant)	neuroPsycho	"79 European ancestry treatment resistant cases, 95 European ancestry non-treatment resistant cases"	EUR	7p12.1	7	50658447	1.74	T	6.00E-07	C	T	0.0469	0.4049	0.4901	0.3579	0.2403	0.30802	C	DER	neuro	174
rs2242663	19416921	Scott LJ	Bipolar disorder	neuroPsycho	"3,683 European ancestry cases, 14,507 European ancestry controls"	EUR	11q13.2	11	66567837	1.2	T	1.00E-06	T	C	0.7648	0.8055	0.754	0.7555	0.8947	0.7949	T	ANC	neuro	18190
rs2274316	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	1q22	1	156476450	1.14	C	1.00E-07	C	A	0.764	0.4063	0.244	0.329	0.2853	0.40572	C	ANC	neuro	19147
rs2274316	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	1q22	1	156476450	1.07	C	1.00E-08	C	A	0.764	0.4063	0.244	0.329	0.2853	0.40572	C	ANC	neuro	118710
rs2289700	21771265	Yosifova A	Bipolar disorder	neuroPsycho	"188 Bulgarian ancestry cases, 376 Bulgarian ancestry controls"	EUR	15q25.1	15	78932341	2.13	T	9.00E-06	C	T	0.3714	0.3213	0.6389	0.0994	0.0798	0.30216	T	ANC	neuro	564
rs230529	22479419	Liou YJ	Schizophrenia (treatment resistant)	neuroPsycho	"522 Han Chinese ancestry cases, 806 Han Chinese ancestry controls"	EAS	4q24	4	102536261	1.45	T	2.00E-07	T	C	0.4289	0.4755	0.4841	0.4066	0.2863	0.41628	T	ANC	neuro	1328
rs2312236	25456346	Nievergelt CM	Post-traumatic stress disorder	neuroPsycho	"940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls"	MIX	1q24.1	1	166824980	1.13	T	4.38E-05	T	C	0.003	0.0303	0.0169	0.0915	0.1984	0.06802	C	DER	neuro	3494
rs2326810	20038947	Shyn SI	Major depressive disorder (broad)	neuroPsycho	"3,957 European ancestry cases, 3,428 European ancestry controls"	EUR	6p25.1	6	6612234	1.41	G	7.00E-06	G	C	0.9259	0.8689	0.8224	0.9404	0.9059	0.8927	G	ANC	neuro	7385
rs2338971	24511991	Hill-Burns EM	Parkinson's disease	neuroPsycho	"1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls"	EUR	1p21.2	1	101414449	1.35	C	4.00E-10	T	C	0.8472	0.5504	0.8006	0.829	0.7117	0.74778	C	ANC	neuro	3986
rs2373000	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	2p22.2	2	37365485	1.087	T	7.00E-09	C	T	0.8434	0.6455	0.6548	0.3966	0.6646	0.64098	T	ANC	neuro	32143
rs2377360	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	1q41	1	217027541	1.6	G	9.00E-06	G	A	0.5998	0.3804	0.1806	0.2714	0.3221	0.35086	A	DER	neuro	2256
rs2414739	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	15q22.2	15	61701935	1.113	A	1.00E-11	G	A	0.4818	0.781	0.8065	0.7207	0.6994	0.69788	G	DER	neuro	108990
rs2447820	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	5q23.2	5	122929041	1.09	T	4.00E-06	G	T	0.1861	0.3026	0.4911	0.1203	0.3804	0.2961	G	DER	neuro	118710
rs2462686	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	7p12.3	7	45942861	1.4872	C	9.00E-06	T	C	0.239	0.2435	0.0248	0.331	0.3088	0.22942	T	DER	neuro	2256
rs2506155	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10p11.22	10	33214251	1.08	A	3.00E-06	C	A	0.112	0.1009	0.12	0.161	0.138	0.12638	C	DER	neuro	118710
rs2523722	22883433	Irish Schizophrenia Genomics Consortium & the Wellcome Trust Case Control Consortium 2	Schizophrenia	neuroPsycho	"1,606 European ancestry cases, 1,794 European ancestry controls"	EUR	6p22.1	6	30197496	1.25	C	1.00E-16	C	T	0.6172	0.8444	0.9226	0.8221	0.8998	0.82122	C	ANC	neuro	3400
rs2537859	19416921	Scott LJ	Bipolar disorder	neuroPsycho	"3,683 European ancestry cases, 14,507 European ancestry controls"	EUR	4q12	4	54616651	1.16	T	4.00E-06	C	T	0.6967	0.5303	0.4325	0.4384	0.5225	0.52408	T	ANC	neuro	18190
rs2546057	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	19q13.11	19	33829949	1.183	A	3.00E-07	A	C	0.7617	0.4856	0.8552	0.5229	0.6135	0.64778	A	ANC	neuro	2256
rs2601828	20522523	Kasperaviciute D	Partial epilepsies	neuroPsycho	"Up to 3,445 European ancestry cases, 6,935 European ancestry controls"	EUR	16p13.3	16	4053870	1.12	T	1.00E-06	T	C	0.1778	0.3991	0.3442	0.2396	0.1973	0.2716	C	DER	neuro	10380
rs2602381	20732626	Mick E	Attention deficit hyperactivity disorder	neuroPsycho	735 trios from 732 families	MIX	2q37.1	2	233675678	1.42	T	4.00E-06	T	C	0.5976	0.5821	0.7302	0.4791	0.3906	0.55592	T	ANC	neuro	1467
rs2616978	25456346	Nievergelt CM	Post-traumatic stress disorder	neuroPsycho	"940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls"	MIX	8p23.2	8	4620822	1.0427	T	1.04E-06	T	C	0.3275	0.5965	0.505	0.6074	0.5102	0.50932	T	ANC	neuro	3494
rs264272	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	18p11.21	18	10923810	1.144	G	4.00E-06	G	T	0.4372	0.4697	0.3998	0.4831	0.3671	0.43138	G	ANC	neuro	2256
rs2651899	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	1p36.32	1	3167148	1.09	C	4.00E-14	T	C	0.7345	0.4928	0.4117	0.4254	0.5051	0.5139	C	ANC	neuro	118710
rs270545	20125088	Shi J	Major depressive disorder	neuroPsycho	"1,020 European ancestry cases, 1,636 European ancestry controls"	EUR	5p13.2	5	38051491	1.37	G	1.00E-06	G	A	0.7587	0.7896	0.7073	0.675	0.7914	0.7444	A	DER	neuro	2656
rs2717068	22949513	EPICURE Consortium	Epilepsy (generalized)	neuroPsycho	"702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls"	EUR	2p16.1	2	57867738	1.27	A	4.00E-07	A	C	0.0272	0.3516	0.3958	0.3966	0.4182	0.31788	C	DER	neuro	3988
rs2736990	19915575	Simon-Sanchez J	Parkinson's disease	neuroPsycho	"1,713 European ancestry cases, 3,978 European ancestry controls"	EUR	4q22.1	4	89757390	1.23	G	2.00E-16	G	A	0.8245	0.513	0.5903	0.4821	0.5235	0.58668	G	ANC	neuro	5691
rs2820651	23793025	Anttila V	Migraine with aura	neuroPsycho	"5,118 European ancestry cases, 74,239 European ancestry controls"	EUR	10p15.3	10	1429570	1.22	A	4.00E-07	C	A	0.2632	0.0562	0.1677	0.0805	0.2157	0.15666	C	DER	neuro	79357
rs2823357	21738487	Do CB	Parkinson's disease	neuroPsycho	"3,426 European ancestry cases, 29,624 European ancestry controls"	EUR	21q21.1	21	15542586	1.15	A	6.00E-07	G	A	0.7519	0.4726	0.3145	0.3907	0.453	0.47654	A	ANC	neuro	33050
rs2823819	20732626	Mick E	Attention deficit hyperactivity disorder	neuroPsycho	735 trios from 732 families	MIX	21q21.1	21	16455971	1.65	G	7.00E-07	A	G	0.3646	0.1729	0.119	0.1581	0.3384	0.2306	A	DER	neuro	1467
rs2826659	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	21q21.1	21	21115536	1.35	A	7.00E-06	A	C	0.9841	0.8559	0.9911	0.7594	0.8691	0.89192	A	ANC	neuro	1906
rs2828520	20125088	Shi J	Major depressive disorder	neuroPsycho	"1,020 European ancestry cases, 1,636 European ancestry controls"	EUR	21q21.2	21	23770802	1.35	G	4.00E-07	G	A	0.4297	0.2219	0.1528	0.325	0.3057	0.28702	A	DER	neuro	2656
rs28498976	25087078	Anney RJ	Epilepsy	neuroPsycho	"405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls"	MIX	4p15.1	4	31149735	1.11	A	5.00E-09	G	A	0.5265	0.3588	0.5198	0.4135	0.5654	0.4768	G	DER	neuro	34853
rs2858884	20711174	Hor H	Narcolepsy	neuroPsycho	"562 European ancestry cases, 702 European ancestry controls"	EUR	6p21.32	6	32732306	1.79	A	3.00E-08	A	C	0.6596	0.853	0.9355	0.8072	0.7699	0.80504	A	ANC	neuro	1264
rs2860223	23382809	Xu C	Schizophrenia (negative symptoms)	neuroPsycho	"1,774 European ancestry cases, 2,726 European ancestry controls"	EUR	8q24.22	8	133656434	1.26	G	2.00E-06	A	G	0.2141	0.3847	0.3998	0.3201	0.4857	0.36088	A	DER	neuro	4500
rs290227	23480133	Kim Y	Vascular dementia	neuroPsycho	"84 Korean ancestry cases, 200 Korean ancestry controls"	EAS	9q22.2	9	90874382	2.2	G	7.00E-11	G	A	0.6331	0.7867	0.369	0.7485	0.4294	0.59334	G	ANC	neuro	284
rs2905072	19416921	Scott LJ	Bipolar disorder	neuroPsycho	"3,683 European ancestry cases, 14,507 European ancestry controls"	EUR	9q34.13	9	132969648	1.21	A	6.00E-06	G	A	0.8442	0.7795	0.7044	0.8171	0.7791	0.78486	A	ANC	neuro	18190
rs2905424	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	19p13.11	19	19362636	1.092	T	3.00E-09	T	C	0.6558	0.4697	0.3433	0.3231	0.5532	0.46902	C	DER	neuro	32143
rs2910032	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	5q33.1	5	153160794	1.08	C	4.00E-08	C	T	0.5741	0.3156	0.1677	0.4622	0.3384	0.3716	C	ANC	neuro	32143
rs2947349	25087078	Anney RJ	Epilepsy	neuroPsycho	"405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls"	MIX	2p16.1	2	57832668	1.23	C	1.00E-08	C	A	0.0295	0.3458	0.3671	0.3728	0.4172	0.30648	A	DER	neuro	34853
rs2949006	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	2q33.1	2	199850665	1.102	T	1.00E-08	T	G	0.1415	0.0908	0.1875	0.1819	0.0746	0.13526	G	DER	neuro	32143
rs2953145	17554300	WTCCC	Bipolar disorder	neuroPsycho	"1,868 European ancestry cases, 2,938 European ancestry controls"	EUR	2q37.3	2	240576179	1.84	C	7.00E-06	G	C	0.7897	0.8674	0.9633	0.7853	0.7249	0.82612	G	DER	neuro	4806
rs2986961	23793025	Anttila V	Migraine with aura	neuroPsycho	"5,118 European ancestry cases, 74,239 European ancestry controls"	EUR	10p11.23	10	29798430	1.14	C	5.00E-07	C	T	0.4818	0.3112	0.4583	0.2913	0.547	0.41792	C	ANC	neuro	79357
rs302668	24943344	Ferrari R	Frontotemporal dementia	neuroPsycho	"1,377 European ancestry behavioural variant cases, 308 European ancestry Semantic dementia cases, 269 European ancestry Progressive nonfluent aphasia cases, 200 European ancestry Frontotremporal dementia with motor neuron disease cases, up to 4,308 European ancestry controls"	EUR	"11q14.2, 11q14.2[rs302668]; 11q14.2[rs302652]"	11	88143743	1.23	T	2.00E-07	T	C	0.8979	0.7262	0.6815	0.6511	0.7791	0.74716	T	ANC	neuro	6462
rs3129882	20711177	Hamza TH	Parkinson's disease	neuroPsycho	"2,000 European ancestry cases, 1,986 European ancestry controls"	EUR	6p21.32	6	32441753	1.26	G	2.00E-10	G	A	0.4327	0.4193	0.6319	0.4453	0.5266	0.49116	A	DER	neuro	3986
rs3131296	19571808	Stefansson H	Schizophrenia	neuroPsycho	"2,663 European ancestry cases, 13,498 European ancestry controls"	EUR	6p21.32	6	32205216	1.19	C	2.00E-10	C	T	0.9009	0.9524	0.9692	0.8966	0.9039	0.9246	C	ANC	neuro	16161
rs329648	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	11q25	11	133895472	1.105	T	1.00E-11	T	C	0.7103	0.5	0.3145	0.333	0.3967	0.4509	T	ANC	neuro	108990
rs34311866	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	4p16.3	4	958159	1.27	C	1.00E-43	T	C	0.0083	0.0879	0.131	0.1869	0.316	0.14602	T	DER	neuro	108990
rs34372695	21292315	Nalls MA	Parkinson's disease	neuroPsycho	"5,333 European ancestry cases, 12,019 European ancestry controls"	EUR	1q22	1	156060246	1.47	T	4.00E-12	C	T	8.00E-04	0.0101	0	0.0338	0.002	0.00934	C	DER	neuro	17352
rs34637584	21738487	Do CB	Parkinson's disease	neuroPsycho	"3,426 European ancestry cases, 29,624 European ancestry controls"	EUR	12q12	12	40340400	9.62	A	2.00E-28	G	A	0	0.0014	0	0	0	0.00028	G	DER	neuro	33050
rs356182	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	4q22.1	4	89704960	1.32	G	4.00E-73	G	A	0.2995	0.3991	0.63	0.3618	0.3609	0.41026	A	DER	neuro	108990
rs356219	21292315	Nalls MA	Parkinson's disease	neuroPsycho	"5,333 European ancestry cases, 12,019 European ancestry controls"	EUR	4q22.1	4	89716450	1.29	G	2.00E-47	G	A	0.6936	0.4467	0.5238	0.3857	0.4243	0.49482	A	DER	neuro	17352
rs356220	21738487	Do CB	Parkinson's disease	neuroPsycho	"3,426 European ancestry cases, 29,624 European ancestry controls"	EUR	4q22.1	4	89720189	1.29	T	2.00E-19	T	C	0.7126	0.4539	0.5238	0.3857	0.4233	0.49986	T	ANC	neuro	33050
rs35738462	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	1p32.2	1	57790872	1.32	T	2.00E-06	T	C	0.7194	0.6931	0.6577	0.5417	0.4755	0.61748	T	ANC	neuro	1906
rs35749011	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	1q22	1	155162560	1.824	A	1.00E-29	G	A	0.0015	0.0014	0	0.0219	0.002	0.00536	A	ANC	neuro	108990
rs35881094	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	2p16.1	2	58695786	1.16	G	7.00E-06	T	G	0.5189	0.5043	0.5615	0.4374	0.4356	0.49154	T	DER	neuro	8680
rs359268	23646285	Khor SS	Hypersomnia (HLA-DQB1*06:02 negative)	neuroPsycho	"125 Japanese ancestry cases, 562 Japanese ancestry controls"	EAS	2p16.1	2	60232671	2.81	C	1.00E-06	T	C	0.4236	0.5331	0.378	0.4751	0.3579	0.43354	T	DER	neuro	687
rs35951	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	5q11.2	5	54296531	1.43	G	1.00E-08	G	T	0.469	0.451	0.5317	0.1541	0.2894	0.37904	T	DER	neuro	1906
rs364477	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	9p24.3	9	955794	1.6925	C	4.00E-06	C	T	0.32	0.3012	0.1825	0.1899	0.0613	0.21098	T	DER	neuro	2256
rs36563	19581569	Treutlein J	Alcohol dependence	neuroPsycho	"476 European ancestry cases, 1,358 European ancestry controls"	EUR	14q24.2	14	70885931	1.33	T	5.00E-06	T	G	0.2436	0.1023	0.1587	0.17	0.0389	0.1427	G	DER	neuro	1834
rs3752246	21460841	Naj AC	Alzheimer's disease (late onset)	neuroPsycho	"8,309 European ancestry cases, 7,366 European ancestry controls"	EUR	19p13.3	19	1056493	1.15	G	6.00E-07	G	C	0.0106	0.1326	0.3522	0.1899	0.227	0.18246	C	DER	neuro	15675
rs3761218	17554300	WTCCC	Bipolar disorder	neuroPsycho	"1,868 European ancestry cases, 2,938 European ancestry controls"	EUR	20p13	20	3795528	1.03	C	7.00E-06	C	T	0.2526	0.3098	0.2867	0.4274	0.455	0.3463	T	DER	neuro	4806
rs3768644	25056061	Ripke S	Schizophrenia	neuroPsycho	"32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls"	MIX	2p13.2	2	72134376	1.1061947	G	7.00E-09	G	A	0.8661	0.9481	0.9663	0.8837	0.9499	0.92282	G	ANC	neuro	83550
rs3790455	22683712	Freilinger T	Migraine	neuroPsycho	"2,326 European ancestry cases, 4,580 European ancestry controls"	EUR	1q22	1	156486509	1.2	C	7.00E-11	C	T	0.7632	0.4049	0.247	0.325	0.2832	0.40466	C	ANC	neuro	6906
rs3793947	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	11q14.1	11	83833429	1.0764	G	4.00E-07	G	A	0.6271	0.6182	0.5149	0.5497	0.5348	0.56894	G	ANC	neuro	108990
rs3821396	18711365	Ferreira MA	Bipolar disorder	neuroPsycho	"4,387 European ancestry cases, 6,209 European ancestry controls"	EUR	3p24.3	3	21664877	1.23	A	5.00E-06	G	A	0.0129	0.1455	0.1458	0.1163	0.0665	0.0974	G	DER	neuro	10596
rs3923518	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	3p22.2	3	38844922	1.06	A	8.00E-06	C	A	0.1808	0.2392	0.128	0.2386	0.1564	0.1886	C	DER	neuro	118710
rs3950186	24047446	Schosser A	Anxiety and major depressive disorder	neuroPsycho	"1,080 European ancestry cases, 1,588 European ancestry controls"	EUR	6p24.1	6	11811081	1.319	T	8.00E-06	C	T	0.8616	0.5548	0.4812	0.339	0.6186	0.57104	T	ANC	neuro	2668
rs39861	22949513	EPICURE Consortium	Epilepsy (generalized)	neuroPsycho	"702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls"	EUR	5q12.3	5	66856430	1.26	G	3.00E-07	A	G	0.2224	0.2363	0.3452	0.2525	0.2035	0.25198	A	DER	neuro	3988
rs4129585	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	8q24.3	8	142231572	1.091	A	2.00E-10	A	C	0.0688	0.2695	0.2639	0.4453	0.2086	0.25122	C	DER	neuro	32143
rs4130047	21738487	Do CB	Parkinson's disease	neuroPsycho	"3,426 European ancestry cases, 29,624 European ancestry controls"	EUR	18q12.3	18	43098270	1.16	C	2.00E-07	T	C	0.2958	0.3501	0.3562	0.338	0.2945	0.32692	C	ANC	neuro	33050
rs41350144	22925353	Lee HJ	Bipolar disorder	neuroPsycho	"2,191 European ancestry cases, 1,434 European ancestry controls"	EUR	1p31.3	1	61350127	2.269	T	3.00E-07	A	T	0.2179	0.5576	0.6806	0.4583	0.6411	0.5111	A	DER	neuro	3625
rs4147929	24162737	European Alzheimer's Disease Initiative (EADI)	Alzheimer's disease (late onset)	neuroPsycho	"17,008 European ancestry cases, 37,154 European ancestry controls"	EUR	19p13.3	19	1063444	1.15	A	1.00E-15	A	G	0.0113	0.1354	0.3532	0.1849	0.2311	0.18318	G	DER	neuro	54162
rs420259	17554300	WTCCC	Bipolar disorder	neuroPsycho	"1,868 European ancestry cases, 2,938 European ancestry controls"	EUR	16p12.2	16	23622705	2.08	A	6.00E-08	A	G	0.5204	0.6643	0.6488	0.7455	0.68	0.6518	G	DER	neuro	4806
rs4238010	19107115	Muglia P	Major depressive disorder	neuroPsycho	"1,359 European ancestry cases, 1,782 European ancestry controls"	EUR	12p13.32	12	4009151	1.72	G	6.00E-06	G	A	0.3343	0.0764	0.0655	0.0984	0.0716	0.12924	A	DER	neuro	3141
rs4271390	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	11q23.3	11	119655426	1.2	T	1.00E-06	T	C	0.4947	0.2507	0.3313	0.2545	0.362	0.33864	C	DER	neuro	8680
rs4307059	19404256	Wang K	Autism	neuroPsycho	"3,101 European ancestry individuals from 780 families, 1,204 European ancestry cases, 6,491 European ancestry controls"	EUR	5p14.1	5	25967594	1.19	T	2.00E-10	T	C	0.9811	0.7334	0.8601	0.5865	0.6861	0.76944	T	ANC	neuro	11576
rs4379368	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	7p14.1	7	40426601	1.11	T	1.00E-09	C	T	0.1172	0.1326	0.4762	0.0944	0.1636	0.1968	T	ANC	neuro	118710
rs4379368	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	7p14.1	7	40426601	1.2	T	7.00E-07	C	T	0.1172	0.1326	0.4762	0.0944	0.1636	0.1968	T	ANC	neuro	19147
rs4379368	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	7p14.1	7	40426601	1.19	T	6.00E-08	C	T	0.1172	0.1326	0.4762	0.0944	0.1636	0.1968	T	ANC	neuro	76534
rs4478147	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	4q21.3	4	86552623	1.12	G	2.00E-06	G	A	0.9002	0.5576	0.4335	0.4622	0.3078	0.53226	G	ANC	neuro	19147
rs4511180	25456346	Nievergelt CM	Post-traumatic stress disorder	neuroPsycho	"940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls"	MIX	1q32.1	1	202180311	1.1229	A	2.80E-05	A	G	0.2322	0.3141	0.2361	0.3996	0.3088	0.29816	G	DER	neuro	3494
rs4523957	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	17p13.3	17	2305605	1.083	T	6.00E-08	G	T	0.2837	0.6326	0.6786	0.6153	0.5133	0.5447	G	DER	neuro	32143
rs4585146	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	3q28	3	192100853	1.1643	G	6.00E-06	G	A	0.8858	0.6614	0.4802	0.6501	0.7055	0.6766	G	ANC	neuro	2256
rs4676049	20885792	Naj AC	Alzheimer's disease (late onset)	neuroPsycho	"931 cases, 1,104 controls"	MIX	"2q12.3, 2q13"	2	109018801	1.76	T	4.00E-08	C	T	0.3321	0.085	0.1528	0.0706	0.0818	0.14446	C	DER	neuro	2035
rs4687552	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	3p21.1	3	52804386	1.086	T	1.00E-08	T	C	0.7738	0.5591	0.6319	0.6074	0.816	0.67764	T	ANC	neuro	32143
rs4698412	21084426	Saad M	Parkinson's disease	neuroPsycho	"1,039 European ancestry cases, 1,984 European ancestry controls"	EUR	4p15.32	4	15735725	1.14	A	2.00E-06	G	A	0.1036	0.549	0.3839	0.5596	0.5869	0.4366	G	DER	neuro	3023
rs472913	19416921	Scott LJ	Bipolar disorder	neuroPsycho	"3,683 European ancestry cases, 14,507 European ancestry controls"	EUR	1p32.1	1	60629886	1.18	C	2.00E-07	G	C	0.4334	0.5562	0.6587	0.4274	0.59	0.53314	G	DER	neuro	18190
rs4757144	23358160	Borglum AD	Schizophrenia	neuroPsycho	"888 European ancestry cases, 882 European ancestry controls"	EUR	"11p15.2, 11p15.3"	11	13309679	1.154	G	5.00E-06	G	A	0.9523	0.5591	0.5853	0.4125	0.5603	0.6139	G	ANC	neuro	1770
rs4796827	24047446	Schosser A	Anxiety and major depressive disorder	neuroPsycho	"1,080 European ancestry cases, 1,588 European ancestry controls"	EUR	17q25.3	17	78637883	1.326	A	2.00E-06	A	G	0.7867	0.4798	0.3343	0.4334	0.3763	0.4821	A	ANC	neuro	2668
rs4801131	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	18q21.2	18	55085469	1.08	C	1.00E-08	C	T	0.6823	0.5893	0.4018	0.6143	0.7188	0.6013	C	ANC	neuro	32143
rs4880487	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10p15.3	10	1200943	1.06	T	3.00E-06	C	T	0.3691	0.1643	0.004	0.2584	0.0491	0.16898	C	DER	neuro	118710
rs492146	23962720	Speed D	Epilepsy (remission after treatment)	neuroPsycho	889 European and unknown ancestry epilepsy cases	MIX	6p12.2	6	52971097	1.7544	A	2.00E-07	G	A	0.3487	0.451	0.747	0.4791	0.5971	0.52458	G	DER	neuro	889
rs4923705	20732626	Mick E	Attention deficit hyperactivity disorder	neuroPsycho	735 trios from 732 families	MIX	15q14	15	36001404	1.51	G	2.00E-06	G	A	0.5325	0.4654	0.3591	0.2306	0.2413	0.36578	G	ANC	neuro	1467
rs4964469	21084426	Saad M	Parkinson's disease	neuroPsycho	"1,039 European ancestry cases, 1,984 European ancestry controls"	EUR	12q23.3	12	106556209	1.16	A	2.00E-07	G	A	0.6543	0.3631	0.3839	0.4195	0.3865	0.44146	A	ANC	neuro	3023
rs4984499	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	15q26.2	15	96104564	1.06	T	8.00E-06	T	A	0.0877	0.3458	0.1389	0.3966	0.3507	0.26394	A	DER	neuro	118710
rs4988462	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	3p11.2	3	87264203	1.18	T	4.00E-07	C	T	0.0227	0.33	0.1925	0.4423	0.2945	0.2564	C	DER	neuro	8680
rs514341	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	1p13.3	1	110110258	1.5	T	6.00E-06	C	T	0.6112	0.1455	0.3016	0.0577	0.0562	0.23444	T	ANC	neuro	1906
rs516243	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	1p36.22	1	10690375	1.11	A	9.00E-06	A	G	0.5832	0.611	0.8542	0.5089	0.6125	0.63396	G	DER	neuro	19147
rs535066	25087078	Anney RJ	Epilepsy	neuroPsycho	"405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls"	MIX	4p12	4	46238270	1.1	G	2.00E-07	G	T	0.2784	0.4755	0.4851	0.4165	0.2086	0.37282	G	ANC	neuro	34853
rs543844	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	6p21.1	6	44457063	1.06	G	3.00E-06	A	G	0.8079	0.6354	0.8175	0.3887	0.6524	0.66038	G	ANC	neuro	118710
rs544368	18711365	Ferreira MA	Bipolar disorder	neuroPsycho	"4,387 European ancestry cases, 6,209 European ancestry controls"	EUR	11q24.2	11	124668099	1.22	T	6.00E-06	T	C	0.0083	0.2579	0.001	0.1074	0.0746	0.08984	C	DER	neuro	10596
rs548181	21926974	Ripke S	Schizophrenia	neuroPsycho	"9,394 European ancestry cases, 12,462 European ancestry controls"	EUR	11q24.2	11	125591814	1.1	G	1.00E-06	A	G	0.6838	0.8746	0.8859	0.8797	0.9397	0.85274	G	ANC	neuro	21856
rs55670112	25087078	Anney RJ	Epilepsy	neuroPsycho	"405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls"	MIX	5q22.3	5	114932773	1.18	C	6.00E-08	A	C	0.3253	0.5807	0.5724	0.4553	0.5194	0.49062	C	ANC	neuro	34853
rs55797066	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	20q13.2	20	51593381	1.33	C	8.00E-06	T	C	0.1104	0.0461	0.0248	0.0557	0.0092	0.04924	T	DER	neuro	8680
rs57083693	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	12q23.2	12	101348402	1.35	C	4.00E-08	T	C	0.1536	0.317	0.375	0.2376	0.2495	0.26654	T	DER	neuro	1906
rs577969	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10q24.2	10	98531419	1.13	T	4.00E-06	C	T	0.0741	0.0231	0.0317	0.0308	0.089	0.04974	C	DER	neuro	118710
rs583583	23382809	Xu C	Schizophrenia (negative symptoms)	neuroPsycho	"1,774 European ancestry cases, 2,726 European ancestry controls"	EUR	1q21.2	1	147611315	1.3	T	6.00E-07	C	T	0.2254	0.3213	0.2768	0.3062	0.3937	0.30468	C	DER	neuro	4500
rs589249	23894747	Aberg KA	Schizophrenia	neuroPsycho	"11,185 European ancestry cases, 10,768 European ancestry controls"	EUR	1p34.3	1	36696751	1.2	G	3.00E-07	A	G	0.9107	0.5144	0.5843	0.3231	0.4785	0.5622	G	ANC	neuro	21953
rs591323	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	8p22	8	16839582	1.09	G	7.00E-08	G	A	0.733	0.7003	0.5774	0.7107	0.4366	0.6316	G	ANC	neuro	108990
rs602848	23793025	Anttila V	Migraine with aura	neuroPsycho	"5,118 European ancestry cases, 74,239 European ancestry controls"	EUR	6q23.2	6	131125651	1.16	C	5.00E-06	C	G	0.3495	0.1974	0.0228	0.1909	0.229	0.19792	G	DER	neuro	79357
rs602848	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	6q23.2	6	131125651	1.18	C	1.00E-06	C	G	0.3495	0.1974	0.0228	0.1909	0.229	0.19792	G	DER	neuro	19147
rs6122972	21771265	Yosifova A	Bipolar disorder	neuroPsycho	"188 Bulgarian ancestry cases, 376 Bulgarian ancestry controls"	EUR	20q13.13	20	50758705	2.02	A	3.00E-06	A	G	0.7194	0.8242	0.869	0.832	0.8456	0.81804	A	ANC	neuro	564
rs615552	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	9p21.3	9	22026078	1.1	C	4.00E-06	T	C	0.0151	0.2017	0.0942	0.4334	0.2945	0.20778	T	DER	neuro	76534
rs61670327	23962720	Speed D	Epilepsy (remission after treatment)	neuroPsycho	889 European and unknown ancestry epilepsy cases	MIX	5p15.33	5	3276582	1.7241	A	7.00E-07	G	A	0.5809	0.6441	0.5585	0.5507	0.4642	0.55968	G	DER	neuro	889
rs61776290	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	1p36.22	1	10634850	1.48	T	2.00E-07	C	T	0.0076	0.0648	0.001	0.1282	0.1769	0.0757	C	DER	neuro	1906
rs61792199	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	4p15.2	4	22921626	1.23	G	9.00E-06	A	G	0.0197	0.2248	0.3552	0.161	0.1759	0.18732	A	DER	neuro	8680
rs62120679	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	19p13.3	19	2363321	1.097	T	6.00E-07	C	T	0.3283	0.4207	0.6657	0.334	0.409	0.43154	C	DER	neuro	108990
rs62184315	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	2q32.2	2	189907219	1.47	T	4.00E-06	T	C	0.9879	0.8516	0.9246	0.8131	0.9162	0.89868	T	ANC	neuro	1906
rs621942	22889924	Scharf JM	Tourette syndrome	neuroPsycho	"778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls"	EUR	11q14.2	11	86072696	1.22	A	9.00E-06	C	A	0.3525	0.232	0.1181	0.2386	0.2781	0.24386	C	DER	neuro	6249
rs6430538	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	2q21.3	2	134782397	1.1429	C	9.00E-20	C	T	0.0197	0.2954	0.0159	0.503	0.1984	0.20648	T	DER	neuro	108990
rs643410	23382809	Xu C	Schizophrenia (negative symptoms)	neuroPsycho	"1,774 European ancestry cases, 2,726 European ancestry controls"	EUR	9q31.3	9	109037283	1.6	A	1.00E-06	A	C	0.1301	0.0288	0	0.0676	0.0245	0.0502	C	DER	neuro	4500
rs644695	20038947	Shyn SI	Major depressive disorder (broad)	neuroPsycho	"3,957 European ancestry cases, 3,428 European ancestry controls"	EUR	3q26.32	3	177573909	1.35	A	5.00E-06	A	G	0.9939	0.9092	0.9583	0.8688	0.8957	0.92518	A	ANC	neuro	7385
rs6461049	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	7p22.3	7	1977810	1.107	T	6.00E-13	C	T	0.6089	0.3804	0.4524	0.5616	0.5736	0.51538	C	DER	neuro	32143
rs6478241	22683712	Freilinger T	Migraine	neuroPsycho	"2,326 European ancestry cases, 4,580 European ancestry controls"	EUR	9q33.1	9	116490350	1.16	A	4.00E-08	A	G	0.73	0.3602	0.3829	0.3807	0.2883	0.42842	G	DER	neuro	6906
rs6478241	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	9q33.1	9	116490350	1.16	A	1.00E-09	A	G	0.73	0.3602	0.3829	0.3807	0.2883	0.42842	G	DER	neuro	19147
rs6478241	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	9q33.1	9	116490350	1.12	A	1.00E-07	A	G	0.73	0.3602	0.3829	0.3807	0.2883	0.42842	G	DER	neuro	76534
rs6479874	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10q11.23	10	51029595	1.09	T	3.00E-07	T	C	0.0719	0.1009	0.0734	0.1302	0.2004	0.11536	C	DER	neuro	118710
rs6494849	19416921	Scott LJ	Bipolar disorder	neuroPsycho	"3,683 European ancestry cases, 14,507 European ancestry controls"	EUR	15q23	15	70188275	1.23	A	7.00E-06	C	A	0.4319	0.1326	0.1786	0.1491	0.2914	0.23672	A	ANC	neuro	18190
rs6532197	19915575	Simon-Sanchez J	Parkinson's disease	neuroPsycho	"1,713 European ancestry cases, 3,978 European ancestry controls"	EUR	4q22.1	4	89876150	1.32	G	1.00E-07	A	G	0.3691	0.0807	0.3165	0.0746	0.1278	0.19374	A	DER	neuro	5691
rs6537837	20125088	Shi J	Major depressive disorder	neuroPsycho	"1,020 European ancestry cases, 1,636 European ancestry controls"	EUR	1p13.3	1	109577110	1.43	T	1.00E-06	C	T	0.1694	0.1556	0.3383	0.171	0.3221	0.23128	C	DER	neuro	2656
rs6539267	22889924	Scharf JM	Tourette syndrome	neuroPsycho	"778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls"	EUR	12q23.3	12	106391776	1.27	T	6.00E-06	T	C	0.9191	0.8199	0.9554	0.6909	0.7607	0.8292	T	ANC	neuro	6249
rs6550435	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	3p22.2	3	36822998	1.08	G	6.00E-08	T	G	0.5023	0.366	0.0615	0.3728	0.3047	0.32146	T	DER	neuro	32143
rs6563569	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	13q13.3	13	37686271	1.16	C	6.00E-06	C	T	0.4508	0.3084	0.5456	0.4195	0.5174	0.44834	T	DER	neuro	8680
rs6583954	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10q23.33	10	94774506	1.08	T	4.00E-06	C	T	0.1967	0.1066	0.3125	0.1451	0.3579	0.22376	C	DER	neuro	118710
rs6598163	22683712	Freilinger T	Migraine	neuroPsycho	"2,326 European ancestry cases, 4,580 European ancestry controls"	EUR	12q24.33	12	131840694	1.15	G	5.00E-07	G	A	0.5484	0.5576	0.4762	0.5417	0.6125	0.54728	G	ANC	neuro	6906
rs6599388	21292315	Nalls MA	Parkinson's disease	neuroPsycho	"5,333 European ancestry cases, 12,019 European ancestry controls"	EUR	4p16.3	4	945299	1.16	T	4.00E-12	C	T	0.2171	0.2248	0.4345	0.3002	0.4509	0.3255	C	DER	neuro	17352
rs6599389	21738487	Do CB	Parkinson's disease	neuroPsycho	"3,426 European ancestry cases, 29,624 European ancestry controls"	EUR	4p16.3	4	945325	1.31	A	4.00E-08	G	A	0.0038	0.0548	0.3046	0.0626	0.137	0.11256	G	DER	neuro	33050
rs6656401	24162737	European Alzheimer's Disease Initiative (EADI)	Alzheimer's disease (late onset)	neuroPsycho	"17,008 European ancestry cases, 37,154 European ancestry controls"	EUR	"1q32.2, 1q32.2[rs6656401]; 1q32.2[rs3818361]"	1	207518704	1.18	A	6.00E-24	A	G	0.0061	0.0793	0.0357	0.174	0.0613	0.07128	G	DER	neuro	54162
rs6678275	24162737	European Alzheimer's Disease Initiative (EADI)	Alzheimer's disease (late onset)	neuroPsycho	"17,008 European ancestry cases, 37,154 European ancestry controls"	EUR	1q31.2	1	193656103	1.09	C	3.00E-07	G	C	0.2315	0.098	0.0268	0.1918	0.1953	0.14868	G	DER	neuro	54162
rs6693295	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	1q44	1	246059818	1.15	T	9.00E-06	C	T	0.3684	0.33	0.4058	0.1809	0.2986	0.31674	T	ANC	neuro	19147
rs6693295	23793025	Anttila V	Migraine with aura	neuroPsycho	"5,118 European ancestry cases, 74,239 European ancestry controls"	EUR	1q44	1	246059818	1.14	T	6.00E-06	C	T	0.3684	0.33	0.4058	0.1809	0.2986	0.31674	T	ANC	neuro	79357
rs6701713	21460841	Naj AC	Alzheimer's disease (late onset)	neuroPsycho	"8,309 European ancestry cases, 7,366 European ancestry controls"	EUR	1q32.2	1	207612944	1.16	A	5.00E-10	A	G	0.4516	0.1066	0.3115	0.1839	0.0757	0.22586	G	DER	neuro	15675
rs6732655	25087078	Anney RJ	Epilepsy	neuroPsycho	"405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls"	MIX	2q24.3	2	166038556	1.12	T	9.00E-10	A	T	0.848	0.7608	0.8909	0.6918	0.726	0.7835	T	ANC	neuro	34853
rs6733011	19416921	Scott LJ	Bipolar disorder	neuroPsycho	"3,683 European ancestry cases, 14,507 European ancestry controls"	EUR	2q11.2	2	98849039	1.17	G	3.00E-06	A	G	0.8411	0.611	0.3383	0.5447	0.5174	0.5705	G	ANC	neuro	18190
rs6733818	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	2q31.2	2	179281548	1.1	G	7.00E-06	G	A	0.6074	0.5821	0.6448	0.4125	0.5256	0.55448	A	DER	neuro	76534
rs6782299	19571811	Purcell SM	Schizophrenia	neuroPsycho	"3,322 European ancestry cases, 3,587 European ancestry controls"	EUR	3q26.33	3	180832914	1.1	T	1.00E-07	G	T	0.9894	0.817	0.8343	0.7396	0.7219	0.82044	T	ANC	neuro	6909
rs6790925	23793025	Anttila V	Migraine - clinic-based	neuroPsycho	"5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls"	EUR	3p24.1	3	30438593	1.15	T	2.00E-08	C	T	0.3782	0.3242	0.5556	0.3877	0.3926	0.40766	T	ANC	neuro	19147
rs6799788	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	3q25.33	3	159926508	1.6268	G	1.00E-06	A	G	0.0779	0.1931	0.0784	0.2068	0.3793	0.1871	A	DER	neuro	2256
rs6812193	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	4q21.1	4	76277833	1.1	C	3.00E-11	C	T	0.5303	0.7536	0.9187	0.6103	0.6902	0.70062	C	ANC	neuro	108990
rs683395	17554300	WTCCC	Bipolar disorder	neuroPsycho	"1,868 European ancestry cases, 2,938 European ancestry controls"	EUR	3q27.1	3	183152030	1.47	G	5.00E-06	G	A	0.1944	0.1239	0.0972	0.0865	0.1237	0.12514	G	ANC	neuro	4806
rs6878284	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	5q21.1	5	102434022	1.09	C	9.00E-09	C	T	0.3449	0.4697	0.5397	0.3588	0.4305	0.42872	C	ANC	neuro	32143
rs6902771	19581569	Treutlein J	Alcohol dependence	neuroPsycho	"476 European ancestry cases, 1,358 European ancestry controls"	EUR	6q25.1	6	151836746	1.24	C	8.00E-06	C	T	0.4977	0.6599	0.5992	0.5726	0.6063	0.58714	C	ANC	neuro	1834
rs6917824	23894747	Aberg KA	Schizophrenia	neuroPsycho	"11,185 European ancestry cases, 10,768 European ancestry controls"	EUR	6q22.31	6	124021518	1.3	G	4.00E-06	A	G	0.4236	0.2752	0.0079	0.1571	0.1994	0.21264	A	DER	neuro	21953
rs6932590	19571808	Stefansson H	Schizophrenia	neuroPsycho	"2,663 European ancestry cases, 13,498 European ancestry controls"	EUR	6p22.1	6	27281152	1.16	T	1.00E-12	T	C	0.6218	0.7968	0.9752	0.7624	0.8548	0.8022	T	ANC	neuro	16161
rs6990255	19416921	Scott LJ	Bipolar disorder	neuroPsycho	"3,683 European ancestry cases, 14,507 European ancestry controls"	EUR	8p12	8	34269430	1.33	T	6.00E-06	C	T	0.2345	0.0576	0.0496	0.0586	0.0389	0.08784	C	DER	neuro	18190
rs6998277	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	8q22.3	8	102627713	1.07	C	2.00E-06	T	C	0.4546	0.2003	0.1657	0.1789	0.2188	0.24366	T	DER	neuro	118710
rs7004633	21926974	Ripke S	Schizophrenia	neuroPsycho	"9,394 European ancestry cases, 12,462 European ancestry controls"	EUR	8q21.3	8	88748082	1.11	A	2.00E-07	A	G	0.5182	0.6859	0.8125	0.7922	0.6564	0.69304	A	ANC	neuro	21856
rs7015657	23793025	Anttila V	Migraine with aura	neuroPsycho	"5,118 European ancestry cases, 74,239 European ancestry controls"	EUR	8p21.3	8	21110040	1.15	G	8.00E-08	C	G	0.2337	0.3689	0.494	0.3042	0.3681	0.35378	G	ANC	neuro	79357
rs702543	17667963	Shifman S	Neuroticism	neuroPsycho	"1,038 European ancestry cases, 1,016 European ancestry controls"	EUR	5q11.2	5	59546948	1.27	T	2.00E-06	C	T	0.0643	0.5389	0.6329	0.5706	0.6155	0.48444	T	ANC	neuro	2054
rs704178	24770881	Nelson PT	Hippocampal sclerosis of aging	neuroPsycho	"241 cases, 1,998 controls"	MIX	12p12.1	12	21840544	2.133	G	1.00E-09	G	C	0.3139	0.3674	0.4097	0.492	0.636	0.4438	G	ANC	neuro	2239
rs705162	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10q26.13	10	123492159	1.06	A	3.00E-06	G	A	0.0189	0.2349	0.3909	0.2376	0.4008	0.25662	G	DER	neuro	118710
rs7068341	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10p13	10	16592300	1.09	T	2.00E-06	C	T	0.1059	0.1167	0.0923	0.1233	0.0562	0.09888	C	DER	neuro	118710
rs7069346	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	10q26.13	10	122970360	1.11	T	3.00E-06	T	A	0.326	0.4409	0.6071	0.2714	0.4622	0.42152	A	DER	neuro	76534
rs7075426	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	10q23.2	10	86456645	1.11	A	6.00E-07	G	A	0.5356	0.3905	0.6845	0.493	0.6656	0.55384	A	ANC	neuro	76534
rs7077361	19915575	Simon-Sanchez J	Parkinson's disease	neuroPsycho	"1,713 European ancestry cases, 3,978 European ancestry controls"	EUR	10p13	10	15519544	1.19	T	5.00E-06	T	C	0.9304	0.9265	1	0.9046	0.9213	0.93656	T	ANC	neuro	5691
rs7085104	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	10q24.32	10	102869116	1.11	A	4.00E-13	A	G	0.6861	0.598	0.4534	0.6501	0.68	0.61352	A	ANC	neuro	32143
rs7174755	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	15q23	15	68304789	1.168	T	9.00E-07	T	C	0.5431	0.7435	0.9683	0.6382	0.8732	0.75326	C	DER	neuro	2256
rs7192086	18677311	O'Donovan MC	Schizophrenia	neuroPsycho	"479 European ancestry cases, 2,937 European ancestry controls"	EUR	16p13.12	16	12967754	1.12	T	6.00E-06	T	A	0.2209	0.1671	0.2887	0.2187	0.3824	0.25556	A	DER	neuro	3416
rs7225151	24162737	European Alzheimer's Disease Initiative (EADI)	Alzheimer's disease (late onset)	neuroPsycho	"17,008 European ancestry cases, 37,154 European ancestry controls"	EUR	17p13.2	17	5233752	1.1	A	4.00E-07	G	A	0.2549	0.0648	0.0476	0.1362	0.0348	0.10766	G	DER	neuro	54162
rs7226677	18711365	Ferreira MA	Bipolar disorder	neuroPsycho	"4,387 European ancestry cases, 6,209 European ancestry controls"	EUR	18p11.32	18	278796	1.24	G	7.00E-06	A	G	0.205	0.2709	0.3175	0.1322	0.2065	0.22642	A	DER	neuro	10596
rs724568	20038947	Shyn SI	Major depressive disorder (broad)	neuroPsycho	"3,957 European ancestry cases, 3,428 European ancestry controls"	EUR	2p14	2	67715348	1.17	C	5.00E-06	C	A	0.7549	0.2392	0.2391	0.3797	0.3538	0.39334	A	DER	neuro	7385
rs7250872	19416921	Scott LJ	Bipolar disorder	neuroPsycho	"3,683 European ancestry cases, 14,507 European ancestry controls"	EUR	19p13.3	19	1811604	1.21	T	2.00E-06	C	T	0.5068	0.4481	0.374	0.3141	0.317	0.392	C	DER	neuro	18190
rs72698613	23962720	Speed D	Epilepsy (remission after treatment)	neuroPsycho	889 European and unknown ancestry epilepsy cases	MIX	4q34.1	4	175087067	2.39	A	4.00E-06	G	A	0.0038	0.0331	0	0.0427	0.0624	0.0284	G	DER	neuro	889
rs72700966	23962720	Speed D	Epilepsy (remission after treatment)	neuroPsycho	889 European and unknown ancestry epilepsy cases	MIX	9p23	9	10505224	2.7	C	3.00E-07	C	T	0.8139	0.9438	1	0.9284	0.9877	0.93476	T	DER	neuro	889
rs72807343	24162737	European Alzheimer's Disease Initiative (EADI)	Alzheimer's disease (late onset)	neuroPsycho	"17,008 European ancestry cases, 37,154 European ancestry controls"	EUR	5q35.3	5	179811261	1.35	T	7.00E-07	C	T	0.0204	0.0115	0.004	0.0169	0.0164	0.01384	C	DER	neuro	54162
rs72823592	22949513	EPICURE Consortium	Epilepsy (generalized)	neuroPsycho	"702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls"	EUR	17q21.32	17	48045642	1.3	G	9.00E-09	G	A	0.9349	0.8703	0.996	0.7783	0.8804	0.89198	G	ANC	neuro	3988
rs72934570	25056061	Ripke S	Schizophrenia	neuroPsycho	"32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls"	EUR	18q21.2	18	55865958	1.1454753	C	2.00E-11	C	T	0.9856	0.9553	1	0.9185	0.9877	0.96942	C	ANC	neuro	83550
rs73070160	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	3p22.3	3	34883533	1.24	T	3.00E-06	C	T	0.2088	0.1643	0.2698	0.1412	0.1176	0.18034	C	DER	neuro	8680
rs73229090	25056061	Ripke S	Schizophrenia	neuroPsycho	"32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls"	MIX	8p21.1	8	27584610	1.1013216	C	2.00E-08	C	A	0.9977	0.9308	1	0.8867	0.9601	0.95506	C	ANC	neuro	83550
rs7341475	18282107	Shifman S	Schizophrenia	neuroPsycho	"660 Ashkenazi Jewish cases, 2,271 Ashkenazi Jewish controls"	EUR	7q22.1	7	103764368	1.58	G	9.00E-07	G	A	0.8283	0.7695	0.9276	0.833	0.8804	0.84776	G	ANC	neuro	2931
rs7427021	19416921	Scott LJ	Bipolar disorder	neuroPsycho	"3,683 European ancestry cases, 14,507 European ancestry controls"	EUR	3q26.1	3	164044176	1.16	G	5.00E-06	A	G	0.6626	0.4568	0.6706	0.4513	0.4826	0.54478	A	DER	neuro	18190
rs7448080	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	5q23.2	5	124062405	1.69	T	4.00E-06	T	C	0.152	0.0735	0.1062	0.0547	0.1227	0.10182	C	DER	neuro	1906
rs74615166	24162737	European Alzheimer's Disease Initiative (EADI)	Alzheimer's disease (late onset)	neuroPsycho	"17,008 European ancestry cases, 37,154 European ancestry controls"	EUR	15q22.31	15	64433291	1.29	C	4.00E-07	T	C	8.00E-04	0.0058	0	0.0159	0.0164	0.00778	C	ANC	neuro	54162
rs7524258	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	1p36.23	1	7232169	1.16	T	8.00E-06	T	C	0.7723	0.4813	0.4246	0.4185	0.3548	0.4903	T	ANC	neuro	8680
rs7528859	23793025	Anttila V	Migraine with aura	neuroPsycho	"5,118 European ancestry cases, 74,239 European ancestry controls"	EUR	1p36.31	1	5600949	1.12	A	5.00E-06	T	A	0.671	0.379	0.2579	0.3827	0.364	0.41092	A	ANC	neuro	79357
rs7544736	19571811	Purcell SM	Schizophrenia	neuroPsycho	"3,322 European ancestry cases, 3,587 European ancestry controls"	EUR	1p21.3	1	96698787	1.25	G	6.00E-07	A	G	0.3707	0.134	0.2063	0.2087	0.1534	0.21462	A	DER	neuro	6909
rs7587026	24014518	Kasperaviciute D	Mesial temporal lobe epilepsy with hippocampal sclerosis	neuroPsycho	"up to 1,018 European ancestry cases, 7,552 European ancestry controls"	EUR	2q24.3	2	166122240	1.42	A	3.00E-09	C	A	0.261	0.1816	0.1786	0.2545	0.1585	0.20684	C	DER	neuro	8570
rs7590720	19581569	Treutlein J	Alcohol dependence	neuroPsycho	"476 European ancestry cases, 1,358 European ancestry controls"	EUR	2q35	2	216033935	1.35	G	1.00E-08	G	A	0.2194	0.2133	0.3185	0.2843	0.3855	0.2842	A	DER	neuro	1834
rs7617877	21044948	Spencer CC	Parkinson's disease	neuroPsycho	"1,705 European ancestry cases, 5,175 European ancestry controls"	EUR	3p24.1	3	28664273	1.23	A	3.00E-06	A	G	0.4955	0.2363	0.2202	0.3449	0.4141	0.3422	A	ANC	neuro	6880
rs7640543	22683712	Freilinger T	Migraine	neuroPsycho	"2,326 European ancestry cases, 4,580 European ancestry controls"	EUR	3p24.1	3	30420911	1.19	A	1.00E-09	G	A	0.0976	0.2565	0.1052	0.325	0.1667	0.1902	G	DER	neuro	6906
rs7647854	21042317	Wray NR	Major depressive disorder	neuroPsycho	"2,431 European ancestry cases, 3,673 European ancestry controls"	EUR	3q27.2	3	185158995	1.19	G	5.00E-06	G	A	0.3056	0.2219	0.1944	0.1789	0.1994	0.22004	A	DER	neuro	6104
rs76904798	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	12q12	12	40220632	1.155	T	5.00E-14	C	T	0.1006	0.2104	0.0605	0.1272	0.1963	0.139	T	ANC	neuro	108990
rs769111	22889924	Scharf JM	Tourette syndrome	neuroPsycho	"778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls"	EUR	7p21.3	7	12020180	1.23	T	6.00E-06	T	G	0.4198	0.5879	0.7153	0.6064	0.6288	0.59164	G	DER	neuro	6249
rs771390	22949513	EPICURE Consortium	Epilepsy (generalized)	neuroPsycho	"702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls"	EUR	"1p34.3, 1p35.1"	1	34285335	1.22	C	6.00E-07	T	C	0.8472	0.8545	0.881	0.7883	0.8538	0.84496	C	ANC	neuro	3988
rs7713917	20673876	Rietschel M	Major depressive disorder	neuroPsycho	"597 European ancestry cases, 1,295 European ancestry controls"	EUR	5q14.1	5	79533426	1.33	G	1.00E-06	A	G	0.8676	0.5893	0.6071	0.3728	0.3609	0.55954	G	ANC	neuro	1892
rs7725217	23646285	Khor SS	Hypersomnia (HLA-DQB1*06:02 negative)	neuroPsycho	"125 Japanese ancestry cases, 562 Japanese ancestry controls"	EAS	5p15.31	5	9756217	2.66	C	1.00E-06	A	C	0.0968	0.2334	0.2202	0.2962	0.2638	0.22208	A	DER	neuro	687
rs7742824	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	6p21.1	6	44097574	1.185	A	9.00E-06	G	A	0.4153	0.2161	0.3085	0.2256	0.1708	0.26726	G	DER	neuro	2256
rs778371	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	2q37.1	2	232878399	1.09	G	2.00E-08	A	G	0.2171	0.3256	0.122	0.2952	0.091	0.21018	A	DER	neuro	32143
rs7810727	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	7q34	7	139892061	1.11	T	8.00E-06	C	T	0.4871	0.4207	0.3879	0.3419	0.5256	0.43264	C	DER	neuro	76534
rs7848024	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	9q31.1	9	102810755	1.19	A	5.00E-06	G	A	0.6899	0.2896	0.2669	0.2674	0.1564	0.33404	G	DER	neuro	8680
rs7868992	22889924	Scharf JM	Tourette syndrome	neuroPsycho	"778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls"	EUR	9q32	9	114228791	1.29	G	3.00E-08	G	A	0.5461	0.3156	0.6687	0.3032	0.1616	0.39904	A	DER	neuro	6249
rs7893279	25056061	Ripke S	Schizophrenia	neuroPsycho	"32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls"	MIX	10p12.31	10	18456176	1.125	T	2.00E-12	T	G	0.9614	0.7983	0.9137	0.8926	0.911	0.8954	T	ANC	neuro	83550
rs7897654	23894747	Aberg KA	Schizophrenia	neuroPsycho	"11,185 European ancestry cases, 10,768 European ancestry controls"	EUR	10q24.32	10	102902701	1.2	T	3.00E-07	T	C	0.7587	0.683	0.5089	0.6978	0.5951	0.6487	C	DER	neuro	21953
rs7900239	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10q22.3	10	78755324	1.09	A	9.00E-06	A	G	0.1914	0.2046	0.2381	0.1332	0.1984	0.19314	G	DER	neuro	118710
rs7914558	21926974	Ripke S	Schizophrenia	neuroPsycho	"9,394 European ancestry cases, 12,462 European ancestry controls"	EUR	10q24.32	10	103016151	1.22	G	2.00E-08	G	A	0.6664	0.5836	0.4147	0.5835	0.5174	0.55312	A	DER	neuro	21856
rs7916968	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10p15.3	10	713328	1.09	G	7.00E-06	A	G	0.1891	0.1931	0.0972	0.1004	0.1196	0.13988	A	DER	neuro	118710
rs7930295	23894747	Aberg KA	Schizophrenia	neuroPsycho	"11,185 European ancestry cases, 10,768 European ancestry controls"	EUR	11q24.2	11	125443703	1.3	G	3.00E-06	A	G	0.0976	0.1412	0.2718	0.1302	0.1616	0.16048	A	DER	neuro	21953
rs7940866	23974872	Ripke S	Schizophrenia	neuroPsycho	"5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls"	EUR	11q25	11	130947684	1.09	T	2.00E-09	T	A	0.3744	0.4798	0.4792	0.505	0.3569	0.43906	A	DER	neuro	32143
rs8012941	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	14q23.2	14	62855629	1.5387	G	4.00E-06	A	G	0.848	0.4222	0.6101	0.4732	0.7229	0.61528	G	ANC	neuro	2256
rs8015959	18711365	Ferreira MA	Bipolar disorder	neuroPsycho	"4,387 European ancestry cases, 6,209 European ancestry controls"	EUR	14q13.1	14	33011716	1.59	T	5.00E-06	C	T	0.2171	0.1037	0.005	0.0408	0.1176	0.09684	T	ANC	neuro	10596
rs8040009	20386566	Lee MT	Bipolar I disorder	neuroPsycho	"1,000 Han Chinese ancestry cases, 1,000 Han Chinese ancestry controls"	EAS	15q26.1	15	92501109	1.4	C	6.00E-06	T	C	0.6717	0.2017	0.1349	0.1879	0.1186	0.26296	C	ANC	neuro	2000
rs8050326	23857890	Power RA	Major depressive disorder	neuroPsycho	"805 European ancestry cases, 805 European ancestry controls"	EUR	16q24.1	16	86070536	1.45	A	3.00E-07	G	A	0.6241	0.5029	0.7351	0.4324	0.4029	0.53948	A	ANC	neuro	1610
rs8057927	23358160	Borglum AD	Schizophrenia	neuroPsycho	"888 European ancestry cases, 882 European ancestry controls"	EUR	16q23.3	16	82659207	1.342	C	1.00E-06	T	C	0.2156	0.1153	0.2808	0.0636	0.1053	0.15612	T	DER	neuro	1770
rs8099939	21771265	Yosifova A	Bipolar disorder	neuroPsycho	"188 Bulgarian ancestry cases, 376 Bulgarian ancestry controls"	EUR	19q13.2	19	42016956	1.95	T	2.00E-06	T	G	0.9576	0.683	0.4593	0.4503	0.728	0.65564	T	ANC	neuro	564
rs8118008	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	20p13	20	3187520	1.111	A	3.00E-11	A	G	0.7504	0.6744	0.3442	0.5865	0.316	0.5343	A	ANC	neuro	108990
rs823118	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	1q32.1	1	205754444	1.122	T	2.00E-16	C	T	0.1551	0.3761	0.5099	0.5348	0.5532	0.42582	C	DER	neuro	108990
rs823128	19915575	Simon-Sanchez J	Parkinson's disease	neuroPsycho	"1,713 European ancestry cases, 3,978 European ancestry controls"	EUR	1q32.1	1	205744250	1.52	A	7.00E-08	G	A	0.6415	0.8429	0.8522	0.9662	0.8793	0.83642	A	ANC	neuro	5691
rs823156	21738487	Do CB	Parkinson's disease	neuroPsycho	"3,426 European ancestry cases, 29,624 European ancestry controls"	EUR	1q32.1	1	205795512	1.21	A	1.00E-07	G	A	0.3381	0.7464	0.755	0.8101	0.726	0.67512	G	DER	neuro	33050
rs827382	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	10p14	10	8677306	1.07	C	9.00E-08	C	T	0.3283	0.1441	0.2431	0.2654	0.2843	0.25304	T	DER	neuro	118710
rs859980	25158072	Yu D	Tourette's syndrome or obsessive-compulsive disorder	neuroPsycho	"1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios"	MIX	6q16.3	6	104053323	1.15	C	7.00E-06	T	C	0.4183	0.6671	0.8006	0.5189	0.4611	0.5732	T	DER	neuro	8680
rs882632	20125088	Shi J	Major depressive disorder	neuroPsycho	"1,020 European ancestry cases, 1,636 European ancestry controls"	EUR	2p23.2	2	29057895	1.34	T	2.00E-06	C	T	0.0219	0.1643	0.001	0.2714	0.1104	0.1138	C	DER	neuro	2656
rs896543	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	2q37.3	2	236600564	1.54	G	1.00E-06	G	A	0.2375	0.8401	0.8046	0.8042	0.7464	0.68656	A	DER	neuro	1906
rs9268856	24943344	Ferrari R	Frontotemporal dementia	neuroPsycho	"1,377 European ancestry behavioural variant cases, 308 European ancestry Semantic dementia cases, 269 European ancestry Progressive nonfluent aphasia cases, 200 European ancestry Frontotremporal dementia with motor neuron disease cases, up to 4,308 European ancestry controls"	EUR	6p21.32	6	32461942	1.24	C	6.00E-09	C	A	0.618	0.7233	0.7391	0.7545	0.7403	0.71504	C	ANC	neuro	6462
rs926938	24189344	Xia K	Autism	neuroPsycho	"275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls"	EAS	"1p13.2, 1p13.2[rs926938]; 1p13.2[rs8453]"	1	114697195	1.27	A	4.00E-08	A	G	0.4629	0.4481	0.5188	0.4861	0.3272	0.44862	A	ANC	neuro	2220
rs9272219	19571809	Shi J	Schizophrenia	neuroPsycho	"2,681 European ancestry cases, 2,653 European ancestry controls, 1,286 African American cases, 973 African American controls"	MIX	6p21.32	6	32634492	1.14	G	7.00E-08	G	T	0.6762	0.67	0.7738	0.7117	0.8016	0.72666	A	DER	neuro	7593
rs9275326	25064009	Nalls MA	Parkinson's disease	neuroPsycho	"13,708 European ancestry cases, 95,282 European ancestry controls"	EUR	6p21.32	6	32698883	1.21	C	1.00E-12	C	T	0.9652	0.8199	0.9306	0.8956	0.9223	0.90672	C	ANC	neuro	108990
rs9393366	22889924	Scharf JM	Tourette syndrome	neuroPsycho	"778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls"	EUR	6p22.3	6	23077083	1.27	A	8.00E-06	G	A	0.0893	0.2824	0.1458	0.3131	0.1871	0.20354	G	DER	neuro	6249
rs9399032	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	6q23.2	6	132567800	1.1	A	4.00E-06	T	A	0.4637	0.2997	0.7946	0.3121	0.4765	0.46932	T	DER	neuro	76534
rs9466930	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	6p22.3	6	23840904	1.501	C	4.00E-06	C	G	0.3865	0.4135	0.498	0.2604	0.2771	0.3671	C	ANC	neuro	2256
rs9490306	23793025	Anttila V	Migraine without aura	neuroPsycho	"7,107 European ancestry cases, 69,427 European ancestry controls"	EUR	6q22.31	6	121495733	1.18	A	3.00E-07	C	A	0.1687	0.1182	0.124	0.1402	0.2618	0.16258	C	DER	neuro	76534
rs9490306	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	6q22.31	6	121495733	1.08	A	7.00E-06	C	A	0.1687	0.1182	0.124	0.1402	0.2618	0.16258	C	DER	neuro	118710
rs9572423	20125088	Shi J	Major depressive disorder	neuroPsycho	"1,020 European ancestry cases, 1,636 European ancestry controls"	EUR	13q21.33	13	70272071	1.54	G	9.00E-06	G	A	0.8464	0.7233	0.5129	0.8708	0.8701	0.7647	A	DER	neuro	2656
rs9601248	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	13q31.1	13	79594869	1.3841	C	2.00E-06	C	T	0.3411	0.3444	0.5923	0.5398	0.6728	0.49808	T	DER	neuro	2256
rs9649465	23793025	Anttila V	Migraine	neuroPsycho	"23,285 European ancestry cases, 95,425 European ancestry controls"	EUR	7q31.32	7	123736506	1.06	A	1.00E-06	G	A	0.2814	0.4265	0.5575	0.4394	0.7137	0.4837	G	DER	neuro	118710
rs974379	23377640	GENDEP Investigators	Major depressive disorder	neuroPsycho	"Up to 2,256 European ancestry cases"	EUR	15q13.3	15	33212866	1.2872	C	8.00E-06	C	A	0.6687	0.121	0.1677	0.0616	0.1513	0.23406	C	ANC	neuro	2256
rs9810857	20732626	Mick E	Attention deficit hyperactivity disorder	neuroPsycho	735 trios from 732 families	MIX	3q24	3	143264057	1.41	A	6.00E-06	A	G	0.8714	0.6427	0.8661	0.5	0.6268	0.7014	A	ANC	neuro	1467
rs9870680	20038947	Shyn SI	Major depressive disorder (broad)	neuroPsycho	"3,957 European ancestry cases, 3,428 European ancestry controls"	EUR	3p26.1	3	7487868	1.19	T	1.00E-06	C	T	0.3487	0.4899	0.7103	0.4791	0.3589	0.47738	T	ANC	neuro	7385
rs9874556	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	3p26.2	3	3314490	1.3	A	9.00E-06	A	G	0.5008	0.3573	0.0357	0.4761	0.3456	0.3431	A	ANC	neuro	1906
rs9943849	20673876	Rietschel M	Major depressive disorder	neuroPsycho	"597 European ancestry cases, 1,295 European ancestry controls"	EUR	12q15	12	68976976	1.37	T	3.00E-06	C	T	0.3419	0.1816	0.2093	0.2386	0.3057	0.25542	C	DER	neuro	1892
rs9947276	24962325	Kapoor M	Alcohol dependence (age at onset)	neuroPsycho	"685 European ancestry cases, 1,103 European ancestry controls from 118 families"	EUR	18q22.3	18	74780733	1.39	T	9.00E-06	A	T	0.3896	0.7983	0.9484	0.7107	0.6748	0.70436	T	ANC	neuro	1906
rs9960767	19571808	Stefansson H	Schizophrenia	neuroPsycho	"2,663 European ancestry cases, 13,498 European ancestry controls"	EUR	18q21.2	18	55487771	1.23	C	4.00E-09	A	C	0.2572	0.0591	0.003	0.0557	0.2587	0.12674	A	DER	neuro	16161