SAMPLES=list(range(0,440))
baseDIR="/home/lzl/project/circCMC/script/sm_permQTL_ratio/"
rule all:
    input: expand("{dir}qtl/permutation/log/{id}.log",dir=baseDIR,id=SAMPLES)

rule PermEpi:
    input: rscript= baseDIR+"permcircQTL.R",
    output: baseDIR+"qtl/permutation/log/{sample}.log"
    params: "{sample}"
    run:
        shell("Rscript {input.rscript} {params} 1>{output}.bak 2>&1")
        shell("cp {output}.bak {output}")

