##fileformat=VCFv4.2 ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##ALT= ##ALT= ##ALT= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT cnv_benchmark_calls chr1 257666 GAIN:chr1:257666-297968 N . . IMPRECISE;SVTYPE=CNV;END=297968;CN=3;SVLEN=40302 GT ./. chr1 2700000 GAINLOH:chr1:2700000-2702781 N , . . IMPRECISE;SVTYPE=CNV;END=2702781;CN=3;SVLEN=2781 GT ./. chr1 2746290 GAINLOH:chr1:2746290-2800000 N , . . IMPRECISE;SVTYPE=CNV;END=2800000;CN=3;SVLEN=53710 GT ./. chr1 2800000 LOH:chr1:2800000-4067592 N . . IMPRECISE;SVTYPE=CNV;END=4067592;SVLEN=1267592 GT ./. chr1 4067592 GAINLOH:chr1:4067592-4100000 N , . . IMPRECISE;SVTYPE=CNV;END=4100000;CN=3;SVLEN=32408 GT ./. chr1 4100000 LOH:chr1:4100000-4150000 N . . IMPRECISE;SVTYPE=CNV;END=4150000;SVLEN=50000 GT ./. chr1 4150000 GAINLOH:chr1:4150000-6000000 N , . . IMPRECISE;SVTYPE=CNV;END=6000000;CN=3;SVLEN=1850000 GT ./. chr1 6000000 LOH:chr1:6000000-6050000 N . . IMPRECISE;SVTYPE=CNV;END=6050000;SVLEN=50000 GT ./. chr1 6050000 GAINLOH:chr1:6050000-9359023 N , . . IMPRECISE;SVTYPE=CNV;END=9359023;CN=3;SVLEN=3309023 GT ./. chr1 9359023 LOSS:chr1:9359023-9374078 N . . IMPRECISE;SVTYPE=CNV;END=9374078;CN=0;SVLEN=15055 GT ./. chr1 9374078 LOH:chr1:9374078-9376798 N . . IMPRECISE;SVTYPE=CNV;END=9376798;SVLEN=2720 GT ./. chr1 9376798 GAINLOH:chr1:9376798-9495511 N , . . IMPRECISE;SVTYPE=CNV;END=9495511;CN=3;SVLEN=118713 GT ./. chr1 9495511 GAIN:chr1:9495511-9495922 N . . IMPRECISE;SVTYPE=CNV;END=9495922;CN=3;SVLEN=411 GT ./. chr1 9495922 GAINLOH:chr1:9495922-9496169 N , . . IMPRECISE;SVTYPE=CNV;END=9496169;CN=3;SVLEN=247 GT ./. chr1 9496169 GAIN:chr1:9496169-9496227 N . . IMPRECISE;SVTYPE=CNV;END=9496227;CN=3;SVLEN=58 GT ./. chr1 9496227 GAINLOH:chr1:9496227-9496351 N , . . IMPRECISE;SVTYPE=CNV;END=9496351;CN=3;SVLEN=124 GT ./. chr1 9496351 GAIN:chr1:9496351-9496516 N . . IMPRECISE;SVTYPE=CNV;END=9496516;CN=3;SVLEN=165 GT ./. chr1 9496516 GAINLOH:chr1:9496516-12900000 N , . . IMPRECISE;SVTYPE=CNV;END=12900000;CN=3;SVLEN=3403484 GT ./. chr1 12900000 GAIN:chr1:12900000-12950000 N . . IMPRECISE;SVTYPE=CNV;END=12950000;CN=3;SVLEN=50000 GT ./. chr1 12950000 GAINLOH:chr1:12950000-12954384 N , . . IMPRECISE;SVTYPE=CNV;END=12954384;CN=3;SVLEN=4384 GT ./. chr1 13004384 GAINLOH:chr1:13004384-13200000 N , . . IMPRECISE;SVTYPE=CNV;END=13200000;CN=3;SVLEN=195616 GT ./. chr1 13200000 GAIN:chr1:13200000-13250000 N . . IMPRECISE;SVTYPE=CNV;END=13250000;CN=3;SVLEN=50000 GT ./. chr1 13250000 GAINLOH:chr1:13250000-16506997 N , . . IMPRECISE;SVTYPE=CNV;END=16506997;CN=3;SVLEN=3256997 GT ./. chr1 16506997 GAIN:chr1:16506997-16512023 N . . IMPRECISE;SVTYPE=CNV;END=16512023;CN=3;SVLEN=5026 GT ./. chr1 16512023 GAINLOH:chr1:16512023-16526823 N , . . IMPRECISE;SVTYPE=CNV;END=16526823;CN=3;SVLEN=14800 GT ./. chr1 16526823 GAIN:chr1:16526823-16799163 N . . IMPRECISE;SVTYPE=CNV;END=16799163;CN=3;SVLEN=272340 GT ./. chr1 16849163 GAIN:chr1:16849163-16879015 N . . IMPRECISE;SVTYPE=CNV;END=16879015;CN=3;SVLEN=29852 GT ./. chr1 16879015 GAINLOH:chr1:16879015-29552233 N , . . IMPRECISE;SVTYPE=CNV;END=29552233;CN=3;SVLEN=12673218 GT ./. chr1 29553835 GAINLOH:chr1:29553835-36665432 N , . . IMPRECISE;SVTYPE=CNV;END=36665432;CN=3;SVLEN=7111597 GT ./. chr1 36665432 LOH:chr1:36665432-36665527 N . . IMPRECISE;SVTYPE=CNV;END=36665527;SVLEN=95 GT ./. chr1 36665528 LOH:chr1:36665528-36665724 N . . IMPRECISE;SVTYPE=CNV;END=36665724;SVLEN=196 GT ./. chr1 37150000 LOH:chr1:37150000-37157364 N . . IMPRECISE;SVTYPE=CNV;END=37157364;SVLEN=7364 GT ./. chr1 37157364 GAINLOH:chr1:37157364-37231489 N , . . IMPRECISE;SVTYPE=CNV;END=37231489;CN=3;SVLEN=74125 GT ./. chr1 37231489 LOH:chr1:37231489-39014556 N . . IMPRECISE;SVTYPE=CNV;END=39014556;SVLEN=1783067 GT ./. chr1 39014556 GAINLOH:chr1:39014556-39014558 N , . . IMPRECISE;SVTYPE=CNV;END=39014558;CN=3;SVLEN=2 GT ./. chr1 39014558 LOH:chr1:39014558-39014800 N . . IMPRECISE;SVTYPE=CNV;END=39014800;SVLEN=242 GT ./. chr1 39014801 GAINLOH:chr1:39014801-40771272 N , . . IMPRECISE;SVTYPE=CNV;END=40771272;CN=3;SVLEN=1756471 GT ./. chr1 40771272 GAIN:chr1:40771272-40771606 N . . IMPRECISE;SVTYPE=CNV;END=40771606;CN=3;SVLEN=334 GT ./. chr1 40771606 GAINLOH:chr1:40771606-40771679 N , . . IMPRECISE;SVTYPE=CNV;END=40771679;CN=3;SVLEN=73 GT ./. chr1 40771679 GAINLOH:chr1:40771679-40771873 N , . . IMPRECISE;SVTYPE=CNV;END=40771873;CN=4;SVLEN=194 GT ./. chr1 40771873 GAINLOH:chr1:40771873-40800000 N , . . IMPRECISE;SVTYPE=CNV;END=40800000;CN=5;SVLEN=28127 GT ./. chr1 40800000 GAIN:chr1:40800000-40900000 N . . IMPRECISE;SVTYPE=CNV;END=40900000;CN=5;SVLEN=100000 GT ./. chr1 40900000 GAINLOH:chr1:40900000-40932910 N , . . IMPRECISE;SVTYPE=CNV;END=40932910;CN=5;SVLEN=32910 GT ./. chr1 40932910 GAIN:chr1:40932910-40933358 N . . IMPRECISE;SVTYPE=CNV;END=40933358;CN=5;SVLEN=448 GT ./. chr1 40933358 GAINLOH:chr1:40933358-40933408 N , . . IMPRECISE;SVTYPE=CNV;END=40933408;CN=4;SVLEN=50 GT ./. chr1 40933408 GAIN:chr1:40933408-40933409 N . . IMPRECISE;SVTYPE=CNV;END=40933409;CN=3;SVLEN=1 GT ./. chr1 40933409 GAINLOH:chr1:40933409-42287945 N , . . IMPRECISE;SVTYPE=CNV;END=42287945;CN=3;SVLEN=1354536 GT ./. chr1 42287945 GAINLOH:chr1:42287945-44722081 N , . . IMPRECISE;SVTYPE=CNV;END=44722081;CN=4;SVLEN=2434136 GT ./. chr1 44722081 GAINLOH:chr1:44722081-45482050 N , . . IMPRECISE;SVTYPE=CNV;END=45482050;CN=3;SVLEN=759969 GT ./. chr1 45482050 GAINLOH:chr1:45482050-46650000 N , . . IMPRECISE;SVTYPE=CNV;END=46650000;CN=4;SVLEN=1167950 GT ./. chr1 46650000 GAIN:chr1:46650000-46700000 N . . IMPRECISE;SVTYPE=CNV;END=46700000;CN=4;SVLEN=50000 GT ./. chr1 46700000 GAINLOH:chr1:46700000-47410923 N , . . IMPRECISE;SVTYPE=CNV;END=47410923;CN=4;SVLEN=710923 GT ./. chr1 47410923 GAINLOH:chr1:47410923-51500000 N , . . IMPRECISE;SVTYPE=CNV;END=51500000;CN=3;SVLEN=4089077 GT ./. chr1 51500000 GAIN:chr1:51500000-51527191 N . . IMPRECISE;SVTYPE=CNV;END=51527191;CN=3;SVLEN=27191 GT ./. chr1 51527191 GAIN:chr1:51527191-51550000 N . . IMPRECISE;SVTYPE=CNV;END=51550000;CN=4;SVLEN=22809 GT ./. chr1 51550000 GAINLOH:chr1:51550000-51714683 N , . . IMPRECISE;SVTYPE=CNV;END=51714683;CN=4;SVLEN=164683 GT ./. chr1 51714683 GAINLOH:chr1:51714683-51714772 N , . . IMPRECISE;SVTYPE=CNV;END=51714772;CN=3;SVLEN=89 GT ./. chr1 51714772 GAIN:chr1:51714772-51714773 N . . IMPRECISE;SVTYPE=CNV;END=51714773;CN=3;SVLEN=1 GT ./. chr1 51714773 GAINLOH:chr1:51714773-52000000 N , . . IMPRECISE;SVTYPE=CNV;END=52000000;CN=3;SVLEN=285227 GT ./. chr1 52000000 GAIN:chr1:52000000-52050000 N . . IMPRECISE;SVTYPE=CNV;END=52050000;CN=3;SVLEN=50000 GT ./. chr1 52050000 GAINLOH:chr1:52050000-52100000 N , . . IMPRECISE;SVTYPE=CNV;END=52100000;CN=3;SVLEN=50000 GT ./. chr1 52100000 LOH:chr1:52100000-52103132 N . . IMPRECISE;SVTYPE=CNV;END=52103132;SVLEN=3132 GT ./. chr1 52103330 LOH:chr1:52103330-58064138 N . . IMPRECISE;SVTYPE=CNV;END=58064138;SVLEN=5960808 GT ./. chr1 58064556 LOSS:chr1:58064556-58560519 N . . IMPRECISE;SVTYPE=CNV;END=58560519;CN=1;SVLEN=495963 GT ./. chr1 58560565 LOH:chr1:58560565-69606829 N . . IMPRECISE;SVTYPE=CNV;END=69606829;SVLEN=11046264 GT ./. chr1 69606829 LOSS:chr1:69606829-76543753 N . . IMPRECISE;SVTYPE=CNV;END=76543753;CN=1;SVLEN=6936924 GT ./. chr1 76543753 LOH:chr1:76543753-76545368 N . . IMPRECISE;SVTYPE=CNV;END=76545368;SVLEN=1615 GT ./. chr1 76545368 GAINLOH:chr1:76545368-81242629 N , . . IMPRECISE;SVTYPE=CNV;END=81242629;CN=3;SVLEN=4697261 GT ./. chr1 81242629 LOH:chr1:81242629-82050000 N . . IMPRECISE;SVTYPE=CNV;END=82050000;SVLEN=807371 GT ./. chr1 82050000 GAINLOH:chr1:82050000-82250000 N , . . IMPRECISE;SVTYPE=CNV;END=82250000;CN=3;SVLEN=200000 GT ./. chr1 82250000 LOH:chr1:82250000-82300000 N . . IMPRECISE;SVTYPE=CNV;END=82300000;SVLEN=50000 GT ./. chr1 82300000 GAINLOH:chr1:82300000-83750000 N , . . IMPRECISE;SVTYPE=CNV;END=83750000;CN=3;SVLEN=1450000 GT ./. chr1 83750000 GAIN:chr1:83750000-83850000 N . . IMPRECISE;SVTYPE=CNV;END=83850000;CN=3;SVLEN=100000 GT ./. chr1 83850000 GAINLOH:chr1:83850000-84050000 N , . . IMPRECISE;SVTYPE=CNV;END=84050000;CN=3;SVLEN=200000 GT ./. chr1 84050000 GAIN:chr1:84050000-84100000 N . . IMPRECISE;SVTYPE=CNV;END=84100000;CN=3;SVLEN=50000 GT ./. chr1 84100000 GAINLOH:chr1:84100000-84200000 N , . . IMPRECISE;SVTYPE=CNV;END=84200000;CN=3;SVLEN=100000 GT ./. chr1 84200000 GAIN:chr1:84200000-84250000 N . . IMPRECISE;SVTYPE=CNV;END=84250000;CN=3;SVLEN=50000 GT ./. chr1 84250000 GAINLOH:chr1:84250000-84443684 N , . . IMPRECISE;SVTYPE=CNV;END=84443684;CN=3;SVLEN=193684 GT ./. chr1 84443684 GAIN:chr1:84443684-84445609 N . . IMPRECISE;SVTYPE=CNV;END=84445609;CN=3;SVLEN=1925 GT ./. chr1 84445609 GAIN:chr1:84445609-84445728 N . . IMPRECISE;SVTYPE=CNV;END=84445728;CN=4;SVLEN=119 GT ./. chr1 84445728 GAINLOH:chr1:84445728-84446195 N , . . IMPRECISE;SVTYPE=CNV;END=84446195;CN=4;SVLEN=467 GT ./. chr1 84446195 GAIN:chr1:84446195-84446400 N . . IMPRECISE;SVTYPE=CNV;END=84446400;CN=4;SVLEN=205 GT ./. chr1 84446400 GAINLOH:chr1:84446400-84446524 N , . . IMPRECISE;SVTYPE=CNV;END=84446524;CN=4;SVLEN=124 GT ./. chr1 84446524 GAINLOH:chr1:84446524-85600000 N , . . IMPRECISE;SVTYPE=CNV;END=85600000;CN=5;SVLEN=1153476 GT ./. chr1 85600000 GAINLOH:chr1:85600000-85691823 N , . . IMPRECISE;SVTYPE=CNV;END=85691823;CN=6;SVLEN=91823 GT ./. chr1 85691823 GAINLOH:chr1:85691823-86473023 N , . . IMPRECISE;SVTYPE=CNV;END=86473023;CN=5;SVLEN=781200 GT ./. chr1 86473023 GAINLOH:chr1:86473023-86475032 N , . . IMPRECISE;SVTYPE=CNV;END=86475032;CN=6;SVLEN=2009 GT ./. chr1 86475032 GAINLOH:chr1:86475032-86974588 N , . . IMPRECISE;SVTYPE=CNV;END=86974588;CN=5;SVLEN=499556 GT ./. chr1 86974588 GAINLOH:chr1:86974588-87000000 N , . . IMPRECISE;SVTYPE=CNV;END=87000000;CN=6;SVLEN=25412 GT ./. chr1 87000000 GAINLOH:chr1:87000000-87570165 N , . . IMPRECISE;SVTYPE=CNV;END=87570165;CN=5;SVLEN=570165 GT ./. chr1 87570165 GAINLOH:chr1:87570165-87600000 N , . . IMPRECISE;SVTYPE=CNV;END=87600000;CN=6;SVLEN=29835 GT ./. chr1 87600000 GAINLOH:chr1:87600000-89625251 N , . . IMPRECISE;SVTYPE=CNV;END=89625251;CN=5;SVLEN=2025251 GT ./. chr1 89625251 GAINLOH:chr1:89625251-94813245 N , . . IMPRECISE;SVTYPE=CNV;END=94813245;CN=4;SVLEN=5187994 GT ./. chr1 94813245 GAIN:chr1:94813245-94846700 N . . IMPRECISE;SVTYPE=CNV;END=94846700;CN=4;SVLEN=33455 GT ./. chr1 94846700 GAINLOH:chr1:94846700-94950000 N , . . IMPRECISE;SVTYPE=CNV;END=94950000;CN=4;SVLEN=103300 GT ./. chr1 94950000 GAIN:chr1:94950000-95050000 N . . IMPRECISE;SVTYPE=CNV;END=95050000;CN=4;SVLEN=100000 GT ./. chr1 95050000 GAINLOH:chr1:95050000-95996513 N , . . IMPRECISE;SVTYPE=CNV;END=95996513;CN=4;SVLEN=946513 GT ./. chr1 95996513 GAIN:chr1:95996513-95999560 N . . IMPRECISE;SVTYPE=CNV;END=95999560;CN=4;SVLEN=3047 GT ./. chr1 95999560 GAIN:chr1:95999560-95999694 N . . IMPRECISE;SVTYPE=CNV;END=95999694;CN=5;SVLEN=134 GT ./. chr1 95999694 GAIN:chr1:95999694-96000000 N . . IMPRECISE;SVTYPE=CNV;END=96000000;CN=4;SVLEN=306 GT ./. chr1 96000017 LOH:chr1:96000017-117650000 N . . IMPRECISE;SVTYPE=CNV;END=117650000;SVLEN=21649983 GT ./. chr1 117669372 GAIN:chr1:117669372-118300000 N . . IMPRECISE;SVTYPE=CNV;END=118300000;CN=4;SVLEN=630628 GT ./. chr1 118300000 GAIN:chr1:118300000-120150000 N . . IMPRECISE;SVTYPE=CNV;END=120150000;CN=5;SVLEN=1850000 GT ./. chr1 120150000 GAIN:chr1:120150000-120204593 N . . IMPRECISE;SVTYPE=CNV;END=120204593;CN=4;SVLEN=54593 GT ./. chr1 120204593 GAIN:chr1:120204593-120700000 N . . IMPRECISE;SVTYPE=CNV;END=120700000;CN=3;SVLEN=495407 GT ./. chr1 120700000 GAIN:chr1:120700000-120800000 N . . IMPRECISE;SVTYPE=CNV;END=120800000;CN=4;SVLEN=100000 GT ./. chr1 120800000 GAIN:chr1:120800000-120969329 N . . IMPRECISE;SVTYPE=CNV;END=120969329;CN=3;SVLEN=169329 GT ./. chr1 120969329 GAIN:chr1:120969329-121050000 N . . IMPRECISE;SVTYPE=CNV;END=121050000;CN=4;SVLEN=80671 GT ./. chr1 121050000 GAIN:chr1:121050000-121196999 N . . IMPRECISE;SVTYPE=CNV;END=121196999;CN=3;SVLEN=146999 GT ./. chr1 121196999 GAIN:chr1:121196999-121800000 N . . IMPRECISE;SVTYPE=CNV;END=121800000;CN=4;SVLEN=603001 GT ./. chr1 121950000 GAIN:chr1:121950000-121976459 N . . IMPRECISE;SVTYPE=CNV;END=121976459;CN=3;SVLEN=26459 GT ./. chr1 122200000 GAIN:chr1:122200000-122224535 N . . IMPRECISE;SVTYPE=CNV;END=122224535;CN=4;SVLEN=24535 GT ./. chr1 122224635 GAIN:chr1:122224635-122250000 N . . IMPRECISE;SVTYPE=CNV;END=122250000;CN=4;SVLEN=25365 GT ./. chr1 122250000 GAIN:chr1:122250000-122300000 N . . IMPRECISE;SVTYPE=CNV;END=122300000;CN=5;SVLEN=50000 GT ./. chr1 122300000 GAIN:chr1:122300000-122350000 N . . IMPRECISE;SVTYPE=CNV;END=122350000;CN=4;SVLEN=50000 GT ./. chr1 122350000 GAIN:chr1:122350000-122500000 N . . IMPRECISE;SVTYPE=CNV;END=122500000;CN=6;SVLEN=150000 GT ./. chr1 122500000 GAIN:chr1:122500000-122503147 N . . IMPRECISE;SVTYPE=CNV;END=122503147;CN=4;SVLEN=3147 GT ./. chr1 122503247 GAIN:chr1:122503247-124785432 N . . IMPRECISE;SVTYPE=CNV;END=124785432;CN=4;SVLEN=2282185 GT ./. chr1 124785532 GAIN:chr1:124785532-124849129 N . . IMPRECISE;SVTYPE=CNV;END=124849129;CN=5;SVLEN=63597 GT ./. chr1 124849229 GAIN:chr1:124849229-124932724 N . . IMPRECISE;SVTYPE=CNV;END=124932724;CN=5;SVLEN=83495 GT ./. chr1 124932824 GAIN:chr1:124932824-124977944 N . . IMPRECISE;SVTYPE=CNV;END=124977944;CN=5;SVLEN=45120 GT ./. chr1 124978326 GAIN:chr1:124978326-125013060 N . . IMPRECISE;SVTYPE=CNV;END=125013060;CN=4;SVLEN=34734 GT ./. chr1 125013223 GAIN:chr1:125013223-125026048 N . . IMPRECISE;SVTYPE=CNV;END=125026048;CN=4;SVLEN=12825 GT ./. chr1 125026071 GAIN:chr1:125026071-125029104 N . . IMPRECISE;SVTYPE=CNV;END=125029104;CN=4;SVLEN=3033 GT ./. chr1 125029169 GAIN:chr1:125029169-125103213 N . . IMPRECISE;SVTYPE=CNV;END=125103213;CN=5;SVLEN=74044 GT ./. chr1 125103233 GAIN:chr1:125103233-125130246 N . . IMPRECISE;SVTYPE=CNV;END=125130246;CN=5;SVLEN=27013 GT ./. chr1 125131847 GAIN:chr1:125131847-125170801 N . . IMPRECISE;SVTYPE=CNV;END=125170801;CN=4;SVLEN=38954 GT ./. chr1 143207551 GAIN:chr1:143207551-143272360 N . . IMPRECISE;SVTYPE=CNV;END=143272360;CN=4;SVLEN=64809 GT ./. chr1 143278152 GAIN:chr1:143278152-143312154 N . . IMPRECISE;SVTYPE=CNV;END=143312154;CN=4;SVLEN=34002 GT ./. chr1 143312154 GAIN:chr1:143312154-143462177 N . . IMPRECISE;SVTYPE=CNV;END=143462177;CN=3;SVLEN=150023 GT ./. chr1 143462177 GAIN:chr1:143462177-143541316 N . . IMPRECISE;SVTYPE=CNV;END=143541316;CN=4;SVLEN=79139 GT ./. chr1 143541316 GAIN:chr1:143541316-163700000 N . . IMPRECISE;SVTYPE=CNV;END=163700000;CN=3;SVLEN=20158684 GT ./. chr1 163700000 GAIN:chr1:163700000-163750000 N . . IMPRECISE;SVTYPE=CNV;END=163750000;CN=4;SVLEN=50000 GT ./. chr1 163750000 GAIN:chr1:163750000-164100000 N . . IMPRECISE;SVTYPE=CNV;END=164100000;CN=3;SVLEN=350000 GT ./. chr1 164100000 GAIN:chr1:164100000-173000000 N . . IMPRECISE;SVTYPE=CNV;END=173000000;CN=4;SVLEN=8900000 GT ./. chr1 173000000 GAIN:chr1:173000000-173050000 N . . IMPRECISE;SVTYPE=CNV;END=173050000;CN=3;SVLEN=50000 GT ./. chr1 173050000 GAIN:chr1:173050000-176050000 N . . IMPRECISE;SVTYPE=CNV;END=176050000;CN=4;SVLEN=3000000 GT ./. chr1 176050000 GAIN:chr1:176050000-176350000 N . . IMPRECISE;SVTYPE=CNV;END=176350000;CN=3;SVLEN=300000 GT ./. chr1 176350000 GAIN:chr1:176350000-176750000 N . . IMPRECISE;SVTYPE=CNV;END=176750000;CN=4;SVLEN=400000 GT ./. chr1 176750000 GAIN:chr1:176750000-178000000 N . . IMPRECISE;SVTYPE=CNV;END=178000000;CN=3;SVLEN=1250000 GT ./. chr1 178000000 GAIN:chr1:178000000-178050000 N . . IMPRECISE;SVTYPE=CNV;END=178050000;CN=4;SVLEN=50000 GT ./. chr1 178050000 GAIN:chr1:178050000-178200000 N . . IMPRECISE;SVTYPE=CNV;END=178200000;CN=3;SVLEN=150000 GT ./. chr1 178200000 GAIN:chr1:178200000-178224871 N . . IMPRECISE;SVTYPE=CNV;END=178224871;CN=4;SVLEN=24871 GT ./. chr1 178224871 GAIN:chr1:178224871-178227642 N . . IMPRECISE;SVTYPE=CNV;END=178227642;CN=3;SVLEN=2771 GT ./. chr1 178227642 GAIN:chr1:178227642-178232927 N . . IMPRECISE;SVTYPE=CNV;END=178232927;CN=4;SVLEN=5285 GT ./. chr1 178232927 GAIN:chr1:178232927-178233383 N . . IMPRECISE;SVTYPE=CNV;END=178233383;CN=3;SVLEN=456 GT ./. chr1 178233383 GAIN:chr1:178233383-178233907 N . . IMPRECISE;SVTYPE=CNV;END=178233907;CN=4;SVLEN=524 GT ./. chr1 178233907 GAIN:chr1:178233907-178234330 N . . IMPRECISE;SVTYPE=CNV;END=178234330;CN=3;SVLEN=423 GT ./. chr1 178234330 GAIN:chr1:178234330-178300000 N . . IMPRECISE;SVTYPE=CNV;END=178300000;CN=4;SVLEN=65670 GT ./. chr1 178300000 GAIN:chr1:178300000-178400000 N . . IMPRECISE;SVTYPE=CNV;END=178400000;CN=3;SVLEN=100000 GT ./. chr1 178400000 GAIN:chr1:178400000-184200000 N . . IMPRECISE;SVTYPE=CNV;END=184200000;CN=4;SVLEN=5800000 GT ./. chr1 184200000 GAIN:chr1:184200000-184350000 N . . IMPRECISE;SVTYPE=CNV;END=184350000;CN=3;SVLEN=150000 GT ./. chr1 184350000 GAIN:chr1:184350000-184400000 N . . IMPRECISE;SVTYPE=CNV;END=184400000;CN=4;SVLEN=50000 GT ./. chr1 184400000 GAIN:chr1:184400000-184950000 N . . IMPRECISE;SVTYPE=CNV;END=184950000;CN=3;SVLEN=550000 GT ./. chr1 184950000 GAIN:chr1:184950000-186350000 N . . IMPRECISE;SVTYPE=CNV;END=186350000;CN=4;SVLEN=1400000 GT ./. chr1 186350000 GAIN:chr1:186350000-186400000 N . . IMPRECISE;SVTYPE=CNV;END=186400000;CN=3;SVLEN=50000 GT ./. chr1 186400000 GAIN:chr1:186400000-187400000 N . . IMPRECISE;SVTYPE=CNV;END=187400000;CN=4;SVLEN=1000000 GT ./. chr1 187400000 GAIN:chr1:187400000-187450000 N . . IMPRECISE;SVTYPE=CNV;END=187450000;CN=3;SVLEN=50000 GT ./. chr1 187450000 GAIN:chr1:187450000-189300000 N . . IMPRECISE;SVTYPE=CNV;END=189300000;CN=4;SVLEN=1850000 GT ./. chr1 189300000 GAIN:chr1:189300000-189350000 N . . IMPRECISE;SVTYPE=CNV;END=189350000;CN=3;SVLEN=50000 GT ./. chr1 189350000 GAIN:chr1:189350000-189500000 N . . IMPRECISE;SVTYPE=CNV;END=189500000;CN=4;SVLEN=150000 GT ./. chr1 189500000 GAIN:chr1:189500000-189600000 N . . IMPRECISE;SVTYPE=CNV;END=189600000;CN=3;SVLEN=100000 GT ./. chr1 189600000 GAIN:chr1:189600000-189650000 N . . IMPRECISE;SVTYPE=CNV;END=189650000;CN=4;SVLEN=50000 GT ./. chr1 189650000 GAIN:chr1:189650000-189700000 N . . IMPRECISE;SVTYPE=CNV;END=189700000;CN=3;SVLEN=50000 GT ./. chr1 189700000 GAIN:chr1:189700000-189750000 N . . IMPRECISE;SVTYPE=CNV;END=189750000;CN=4;SVLEN=50000 GT ./. chr1 189750000 GAIN:chr1:189750000-190150000 N . . IMPRECISE;SVTYPE=CNV;END=190150000;CN=3;SVLEN=400000 GT ./. chr1 190150000 GAIN:chr1:190150000-190350000 N . . IMPRECISE;SVTYPE=CNV;END=190350000;CN=4;SVLEN=200000 GT ./. chr1 190350000 GAIN:chr1:190350000-190450000 N . . IMPRECISE;SVTYPE=CNV;END=190450000;CN=3;SVLEN=100000 GT ./. chr1 190450000 GAIN:chr1:190450000-193800000 N . . IMPRECISE;SVTYPE=CNV;END=193800000;CN=4;SVLEN=3350000 GT ./. chr1 193800000 GAIN:chr1:193800000-195350000 N . . IMPRECISE;SVTYPE=CNV;END=195350000;CN=3;SVLEN=1550000 GT ./. chr1 195350000 GAIN:chr1:195350000-196550000 N . . IMPRECISE;SVTYPE=CNV;END=196550000;CN=4;SVLEN=1200000 GT ./. chr1 196550000 GAIN:chr1:196550000-196750607 N . . IMPRECISE;SVTYPE=CNV;END=196750607;CN=3;SVLEN=200607 GT ./. chr1 196750607 GAIN:chr1:196750607-196752790 N . . IMPRECISE;SVTYPE=CNV;END=196752790;CN=4;SVLEN=2183 GT ./. chr1 196752790 GAIN:chr1:196752790-197400000 N . . IMPRECISE;SVTYPE=CNV;END=197400000;CN=3;SVLEN=647210 GT ./. chr1 197400000 GAIN:chr1:197400000-197450000 N . . IMPRECISE;SVTYPE=CNV;END=197450000;CN=4;SVLEN=50000 GT ./. chr1 197450000 GAIN:chr1:197450000-197650000 N . . IMPRECISE;SVTYPE=CNV;END=197650000;CN=3;SVLEN=200000 GT ./. chr1 197650000 GAIN:chr1:197650000-198250000 N . . IMPRECISE;SVTYPE=CNV;END=198250000;CN=4;SVLEN=600000 GT ./. chr1 198250000 GAIN:chr1:198250000-198300000 N . . IMPRECISE;SVTYPE=CNV;END=198300000;CN=3;SVLEN=50000 GT ./. chr1 198300000 GAIN:chr1:198300000-199000000 N . . IMPRECISE;SVTYPE=CNV;END=199000000;CN=4;SVLEN=700000 GT ./. chr1 199000000 GAIN:chr1:199000000-199050000 N . . IMPRECISE;SVTYPE=CNV;END=199050000;CN=3;SVLEN=50000 GT ./. chr1 199050000 GAIN:chr1:199050000-203608388 N . . IMPRECISE;SVTYPE=CNV;END=203608388;CN=4;SVLEN=4558388 GT ./. chr1 203608388 GAIN:chr1:203608388-203608390 N . . IMPRECISE;SVTYPE=CNV;END=203608390;CN=3;SVLEN=2 GT ./. chr1 203608390 GAIN:chr1:203608390-203608705 N . . IMPRECISE;SVTYPE=CNV;END=203608705;CN=4;SVLEN=315 GT ./. chr1 203608705 GAIN:chr1:203608705-203769648 N . . IMPRECISE;SVTYPE=CNV;END=203769648;CN=5;SVLEN=160943 GT ./. chr1 203769648 GAIN:chr1:203769648-223558935 N . . IMPRECISE;SVTYPE=CNV;END=223558935;CN=3;SVLEN=19789287 GT ./. chr1 223608935 GAIN:chr1:223608935-223843516 N . . IMPRECISE;SVTYPE=CNV;END=223843516;CN=3;SVLEN=234581 GT ./. chr1 223843516 GAIN:chr1:223843516-228558364 N . . IMPRECISE;SVTYPE=CNV;END=228558364;CN=4;SVLEN=4714848 GT ./. chr1 228608364 GAIN:chr1:228608364-248939987 N . . IMPRECISE;SVTYPE=CNV;END=248939987;CN=4;SVLEN=20331623 GT ./. chr1 248939987 GAIN:chr1:248939987-248945457 N . . IMPRECISE;SVTYPE=CNV;END=248945457;CN=3;SVLEN=5470 GT ./. chr10 48046 LOH:chr10:48046-4833950 N . . IMPRECISE;SVTYPE=CNV;END=4833950;SVLEN=4785904 GT ./. chr10 4834434 LOH:chr10:4834434-4842450 N . . IMPRECISE;SVTYPE=CNV;END=4842450;SVLEN=8016 GT ./. chr10 4842450 GAINLOH:chr10:4842450-5130152 N , . . IMPRECISE;SVTYPE=CNV;END=5130152;CN=4;SVLEN=287702 GT ./. chr10 5130152 LOH:chr10:5130152-5133760 N . . IMPRECISE;SVTYPE=CNV;END=5133760;SVLEN=3608 GT ./. chr10 5133761 LOH:chr10:5133761-20290837 N . . IMPRECISE;SVTYPE=CNV;END=20290837;SVLEN=15157076 GT ./. chr10 20297327 GAINLOH:chr10:20297327-20650000 N , . . IMPRECISE;SVTYPE=CNV;END=20650000;CN=5;SVLEN=352673 GT ./. chr10 20650000 GAINLOH:chr10:20650000-21612068 N , . . IMPRECISE;SVTYPE=CNV;END=21612068;CN=4;SVLEN=962068 GT ./. chr10 21612069 LOH:chr10:21612069-21612216 N . . IMPRECISE;SVTYPE=CNV;END=21612216;SVLEN=147 GT ./. chr10 21612566 LOH:chr10:21612566-31811674 N . . IMPRECISE;SVTYPE=CNV;END=31811674;SVLEN=10199108 GT ./. chr10 31811674 GAINLOH:chr10:31811674-31812707 N , . . IMPRECISE;SVTYPE=CNV;END=31812707;CN=6;SVLEN=1033 GT ./. chr10 31812707 GAIN:chr10:31812707-31900000 N . . IMPRECISE;SVTYPE=CNV;END=31900000;CN=6;SVLEN=87293 GT ./. chr10 31900000 GAIN:chr10:31900000-32050000 N . . IMPRECISE;SVTYPE=CNV;END=32050000;CN=5;SVLEN=150000 GT ./. chr10 32050000 GAIN:chr10:32050000-36200000 N . . IMPRECISE;SVTYPE=CNV;END=36200000;CN=4;SVLEN=4150000 GT ./. chr10 36200000 GAIN:chr10:36200000-36250000 N . . IMPRECISE;SVTYPE=CNV;END=36250000;CN=5;SVLEN=50000 GT ./. chr10 36250000 GAIN:chr10:36250000-37150000 N . . IMPRECISE;SVTYPE=CNV;END=37150000;CN=4;SVLEN=900000 GT ./. chr10 37150000 GAIN:chr10:37150000-38529907 N . . IMPRECISE;SVTYPE=CNV;END=38529907;CN=5;SVLEN=1379907 GT ./. chr10 38573338 GAIN:chr10:38573338-38906036 N . . IMPRECISE;SVTYPE=CNV;END=38906036;CN=5;SVLEN=332698 GT ./. chr10 38911580 GAIN:chr10:38911580-38913438 N . . IMPRECISE;SVTYPE=CNV;END=38913438;CN=5;SVLEN=1858 GT ./. chr10 38918269 GAIN:chr10:38918269-39229918 N . . IMPRECISE;SVTYPE=CNV;END=39229918;CN=5;SVLEN=311649 GT ./. chr10 39230136 GAIN:chr10:39230136-39238955 N . . IMPRECISE;SVTYPE=CNV;END=39238955;CN=4;SVLEN=8819 GT ./. chr10 39254793 GAIN:chr10:39254793-39338430 N . . IMPRECISE;SVTYPE=CNV;END=39338430;CN=4;SVLEN=83637 GT ./. chr10 39341705 GAIN:chr10:39341705-39409792 N . . IMPRECISE;SVTYPE=CNV;END=39409792;CN=5;SVLEN=68087 GT ./. chr10 39410237 GAIN:chr10:39410237-39479351 N . . IMPRECISE;SVTYPE=CNV;END=39479351;CN=5;SVLEN=69114 GT ./. chr10 39479371 GAIN:chr10:39479371-39497198 N . . IMPRECISE;SVTYPE=CNV;END=39497198;CN=5;SVLEN=17827 GT ./. chr10 39497296 GAIN:chr10:39497296-39570652 N . . IMPRECISE;SVTYPE=CNV;END=39570652;CN=5;SVLEN=73356 GT ./. chr10 39570672 GAIN:chr10:39570672-39585287 N . . IMPRECISE;SVTYPE=CNV;END=39585287;CN=5;SVLEN=14615 GT ./. chr10 39590435 GAIN:chr10:39590435-39593013 N . . IMPRECISE;SVTYPE=CNV;END=39593013;CN=5;SVLEN=2578 GT ./. chr10 39597435 GAIN:chr10:39597435-39598812 N . . IMPRECISE;SVTYPE=CNV;END=39598812;CN=5;SVLEN=1377 GT ./. chr10 39598832 GAIN:chr10:39598832-39602699 N . . IMPRECISE;SVTYPE=CNV;END=39602699;CN=5;SVLEN=3867 GT ./. chr10 39606089 GAIN:chr10:39606089-39607431 N . . IMPRECISE;SVTYPE=CNV;END=39607431;CN=5;SVLEN=1342 GT ./. chr10 39607451 GAIN:chr10:39607451-39613189 N . . IMPRECISE;SVTYPE=CNV;END=39613189;CN=5;SVLEN=5738 GT ./. chr10 39615618 GAIN:chr10:39615618-39617141 N . . IMPRECISE;SVTYPE=CNV;END=39617141;CN=5;SVLEN=1523 GT ./. chr10 39617255 GAIN:chr10:39617255-39622353 N . . IMPRECISE;SVTYPE=CNV;END=39622353;CN=5;SVLEN=5098 GT ./. chr10 39625274 GAIN:chr10:39625274-39635037 N . . IMPRECISE;SVTYPE=CNV;END=39635037;CN=5;SVLEN=9763 GT ./. chr10 39635057 GAIN:chr10:39635057-39636682 N . . IMPRECISE;SVTYPE=CNV;END=39636682;CN=5;SVLEN=1625 GT ./. chr10 39686682 GAIN:chr10:39686682-39935900 N . . IMPRECISE;SVTYPE=CNV;END=39935900;CN=5;SVLEN=249218 GT ./. chr10 39936000 GAIN:chr10:39936000-41497440 N . . IMPRECISE;SVTYPE=CNV;END=41497440;CN=5;SVLEN=1561440 GT ./. chr10 41497540 GAIN:chr10:41497540-41545720 N . . IMPRECISE;SVTYPE=CNV;END=41545720;CN=5;SVLEN=48180 GT ./. chr10 41545820 GAIN:chr10:41545820-41593521 N . . IMPRECISE;SVTYPE=CNV;END=41593521;CN=5;SVLEN=47701 GT ./. chr10 41693521 GAIN:chr10:41693521-41916265 N . . IMPRECISE;SVTYPE=CNV;END=41916265;CN=5;SVLEN=222744 GT ./. chr10 42066265 GAIN:chr10:42066265-42250000 N . . IMPRECISE;SVTYPE=CNV;END=42250000;CN=4;SVLEN=183735 GT ./. chr10 42250000 GAIN:chr10:42250000-42500000 N . . IMPRECISE;SVTYPE=CNV;END=42500000;CN=5;SVLEN=250000 GT ./. chr10 42500000 GAIN:chr10:42500000-42550000 N . . IMPRECISE;SVTYPE=CNV;END=42550000;CN=6;SVLEN=50000 GT ./. chr10 42550000 GAIN:chr10:42550000-44200000 N . . IMPRECISE;SVTYPE=CNV;END=44200000;CN=7;SVLEN=1650000 GT ./. chr10 44200000 GAIN:chr10:44200000-44900000 N . . IMPRECISE;SVTYPE=CNV;END=44900000;CN=6;SVLEN=700000 GT ./. chr10 44900000 GAIN:chr10:44900000-45100000 N . . IMPRECISE;SVTYPE=CNV;END=45100000;CN=5;SVLEN=200000 GT ./. chr10 45100000 GAIN:chr10:45100000-47780368 N . . IMPRECISE;SVTYPE=CNV;END=47780368;CN=3;SVLEN=2680368 GT ./. chr10 47870368 GAIN:chr10:47870368-51400000 N . . IMPRECISE;SVTYPE=CNV;END=51400000;CN=3;SVLEN=3529632 GT ./. chr10 51400000 GAIN:chr10:51400000-51450000 N . . IMPRECISE;SVTYPE=CNV;END=51450000;CN=4;SVLEN=50000 GT ./. chr10 51450000 GAIN:chr10:51450000-52450000 N . . IMPRECISE;SVTYPE=CNV;END=52450000;CN=3;SVLEN=1000000 GT ./. chr10 52450000 GAIN:chr10:52450000-58818189 N . . IMPRECISE;SVTYPE=CNV;END=58818189;CN=4;SVLEN=6368189 GT ./. chr10 58820124 LOH:chr10:58820124-87773061 N . . IMPRECISE;SVTYPE=CNV;END=87773061;SVLEN=28952937 GT ./. chr10 87773195 LOH:chr10:87773195-87773279 N . . IMPRECISE;SVTYPE=CNV;END=87773279;SVLEN=84 GT ./. chr10 87773279 GAINLOH:chr10:87773279-87773325 N , . . IMPRECISE;SVTYPE=CNV;END=87773325;CN=4;SVLEN=46 GT ./. chr10 87773325 GAIN:chr10:87773325-87773326 N . . IMPRECISE;SVTYPE=CNV;END=87773326;CN=4;SVLEN=1 GT ./. chr10 87773326 GAINLOH:chr10:87773326-87800000 N , . . IMPRECISE;SVTYPE=CNV;END=87800000;CN=4;SVLEN=26674 GT ./. chr10 87800000 GAIN:chr10:87800000-87885716 N . . IMPRECISE;SVTYPE=CNV;END=87885716;CN=4;SVLEN=85716 GT ./. chr10 87954761 LOSS:chr10:87954761-88008827 N . . IMPRECISE;SVTYPE=CNV;END=88008827;CN=0;SVLEN=54066 GT ./. chr10 88008827 LOH:chr10:88008827-102550000 N . . IMPRECISE;SVTYPE=CNV;END=102550000;SVLEN=14541173 GT ./. chr10 102600000 LOH:chr10:102600000-102650000 N . . IMPRECISE;SVTYPE=CNV;END=102650000;SVLEN=50000 GT ./. chr10 102800000 LOH:chr10:102800000-102900000 N . . IMPRECISE;SVTYPE=CNV;END=102900000;SVLEN=100000 GT ./. chr10 103400000 LOH:chr10:103400000-106300000 N . . IMPRECISE;SVTYPE=CNV;END=106300000;SVLEN=2900000 GT ./. chr10 106450000 LOH:chr10:106450000-106650000 N . . IMPRECISE;SVTYPE=CNV;END=106650000;SVLEN=200000 GT ./. chr10 106700000 LOH:chr10:106700000-106750000 N . . IMPRECISE;SVTYPE=CNV;END=106750000;SVLEN=50000 GT ./. chr10 106800000 LOH:chr10:106800000-109900000 N . . IMPRECISE;SVTYPE=CNV;END=109900000;SVLEN=3100000 GT ./. chr10 109950000 LOH:chr10:109950000-113951889 N . . IMPRECISE;SVTYPE=CNV;END=113951889;SVLEN=4001889 GT ./. chr10 113969258 LOH:chr10:113969258-114100000 N . . IMPRECISE;SVTYPE=CNV;END=114100000;SVLEN=130742 GT ./. chr10 114200000 LOH:chr10:114200000-117200000 N . . IMPRECISE;SVTYPE=CNV;END=117200000;SVLEN=3000000 GT ./. chr10 117250000 LOH:chr10:117250000-118754238 N . . IMPRECISE;SVTYPE=CNV;END=118754238;SVLEN=1504238 GT ./. chr10 118850000 LOH:chr10:118850000-118859670 N . . IMPRECISE;SVTYPE=CNV;END=118859670;SVLEN=9670 GT ./. chr10 118860311 GAIN:chr10:118860311-118900000 N . . IMPRECISE;SVTYPE=CNV;END=118900000;CN=3;SVLEN=39689 GT ./. chr10 118906582 LOH:chr10:118906582-120044612 N . . IMPRECISE;SVTYPE=CNV;END=120044612;SVLEN=1138030 GT ./. chr10 120046310 GAIN:chr10:120046310-120050000 N . . IMPRECISE;SVTYPE=CNV;END=120050000;CN=4;SVLEN=3690 GT ./. chr10 120050000 GAIN:chr10:120050000-120140993 N . . IMPRECISE;SVTYPE=CNV;END=120140993;CN=5;SVLEN=90993 GT ./. chr10 120140993 GAINLOH:chr10:120140993-120200000 N , . . IMPRECISE;SVTYPE=CNV;END=120200000;CN=5;SVLEN=59007 GT ./. chr10 120200000 GAINLOH:chr10:120200000-124121200 N , . . IMPRECISE;SVTYPE=CNV;END=124121200;CN=4;SVLEN=3921200 GT ./. chr10 124121502 GAINLOH:chr10:124121502-125850000 N , . . IMPRECISE;SVTYPE=CNV;END=125850000;CN=4;SVLEN=1728498 GT ./. chr10 125850000 GAIN:chr10:125850000-125950000 N . . IMPRECISE;SVTYPE=CNV;END=125950000;CN=4;SVLEN=100000 GT ./. chr10 125950000 GAINLOH:chr10:125950000-126824124 N , . . IMPRECISE;SVTYPE=CNV;END=126824124;CN=4;SVLEN=874124 GT ./. chr10 126824124 GAIN:chr10:126824124-126824513 N . . IMPRECISE;SVTYPE=CNV;END=126824513;CN=4;SVLEN=389 GT ./. chr10 126824513 GAINLOH:chr10:126824513-126850000 N , . . IMPRECISE;SVTYPE=CNV;END=126850000;CN=4;SVLEN=25487 GT ./. chr10 126850000 GAINLOH:chr10:126850000-126900000 N , . . IMPRECISE;SVTYPE=CNV;END=126900000;CN=5;SVLEN=50000 GT ./. chr10 126900000 GAINLOH:chr10:126900000-127250000 N , . . IMPRECISE;SVTYPE=CNV;END=127250000;CN=4;SVLEN=350000 GT ./. chr10 127250000 GAIN:chr10:127250000-127300000 N . . IMPRECISE;SVTYPE=CNV;END=127300000;CN=4;SVLEN=50000 GT ./. chr10 127300000 GAINLOH:chr10:127300000-128550000 N , . . IMPRECISE;SVTYPE=CNV;END=128550000;CN=4;SVLEN=1250000 GT ./. chr10 128550000 GAIN:chr10:128550000-128573602 N . . IMPRECISE;SVTYPE=CNV;END=128573602;CN=4;SVLEN=23602 GT ./. chr10 128573602 GAINLOH:chr10:128573602-131597030 N , . . IMPRECISE;SVTYPE=CNV;END=131597030;CN=4;SVLEN=3023428 GT ./. chr10 131597130 GAINLOH:chr10:131597130-132150000 N , . . IMPRECISE;SVTYPE=CNV;END=132150000;CN=4;SVLEN=552870 GT ./. chr10 132150000 GAIN:chr10:132150000-132200000 N . . IMPRECISE;SVTYPE=CNV;END=132200000;CN=4;SVLEN=50000 GT ./. chr10 132200000 GAINLOH:chr10:132200000-132900000 N , . . IMPRECISE;SVTYPE=CNV;END=132900000;CN=4;SVLEN=700000 GT ./. chr10 132900000 GAINLOH:chr10:132900000-133050000 N , . . IMPRECISE;SVTYPE=CNV;END=133050000;CN=3;SVLEN=150000 GT ./. chr10 133050000 GAIN:chr10:133050000-133100000 N . . IMPRECISE;SVTYPE=CNV;END=133100000;CN=4;SVLEN=50000 GT ./. chr10 133100000 GAINLOH:chr10:133100000-133600000 N , . . IMPRECISE;SVTYPE=CNV;END=133600000;CN=3;SVLEN=500000 GT ./. chr10 133600000 GAINLOH:chr10:133600000-133621536 N , . . IMPRECISE;SVTYPE=CNV;END=133621536;CN=4;SVLEN=21536 GT ./. chr10 133621536 GAIN:chr10:133621536-133650000 N . . IMPRECISE;SVTYPE=CNV;END=133650000;CN=4;SVLEN=28464 GT ./. chr10 133650000 GAIN:chr10:133650000-133690466 N . . IMPRECISE;SVTYPE=CNV;END=133690466;CN=3;SVLEN=40466 GT ./. chr10 133750000 GAIN:chr10:133750000-133786589 N . . IMPRECISE;SVTYPE=CNV;END=133786589;CN=4;SVLEN=36589 GT ./. chr11 200000 LOH:chr11:200000-6457996 N . . IMPRECISE;SVTYPE=CNV;END=6457996;SVLEN=6257996 GT ./. chr11 6457997 LOSS:chr11:6457997-6538911 N . . IMPRECISE;SVTYPE=CNV;END=6538911;CN=0;SVLEN=80914 GT ./. chr11 6541262 LOH:chr11:6541262-36128004 N . . IMPRECISE;SVTYPE=CNV;END=36128004;SVLEN=29586742 GT ./. chr11 36128004 LOSS:chr11:36128004-36323023 N . . IMPRECISE;SVTYPE=CNV;END=36323023;CN=0;SVLEN=195019 GT ./. chr11 36323023 LOH:chr11:36323023-50819607 N . . IMPRECISE;SVTYPE=CNV;END=50819607;SVLEN=14496584 GT ./. chr11 51090484 GAIN:chr11:51090484-52550000 N . . IMPRECISE;SVTYPE=CNV;END=52550000;CN=4;SVLEN=1459516 GT ./. chr11 52550000 GAIN:chr11:52550000-53200000 N . . IMPRECISE;SVTYPE=CNV;END=53200000;CN=3;SVLEN=650000 GT ./. chr11 53200000 GAIN:chr11:53200000-53300000 N . . IMPRECISE;SVTYPE=CNV;END=53300000;CN=4;SVLEN=100000 GT ./. chr11 53300000 GAIN:chr11:53300000-54342399 N . . IMPRECISE;SVTYPE=CNV;END=54342399;CN=3;SVLEN=1042399 GT ./. chr11 54342499 GAIN:chr11:54342499-54425074 N . . IMPRECISE;SVTYPE=CNV;END=54425074;CN=4;SVLEN=82575 GT ./. chr11 54525074 GAIN:chr11:54525074-57700000 N . . IMPRECISE;SVTYPE=CNV;END=57700000;CN=4;SVLEN=3174926 GT ./. chr11 57700000 GAIN:chr11:57700000-62547675 N . . IMPRECISE;SVTYPE=CNV;END=62547675;CN=5;SVLEN=4847675 GT ./. chr11 62716433 GAIN:chr11:62716433-62750000 N . . IMPRECISE;SVTYPE=CNV;END=62750000;CN=5;SVLEN=33567 GT ./. chr11 62750000 GAIN:chr11:62750000-63400000 N . . IMPRECISE;SVTYPE=CNV;END=63400000;CN=4;SVLEN=650000 GT ./. chr11 63400000 GAIN:chr11:63400000-67000000 N . . IMPRECISE;SVTYPE=CNV;END=67000000;CN=5;SVLEN=3600000 GT ./. chr11 67000000 GAIN:chr11:67000000-67800000 N . . IMPRECISE;SVTYPE=CNV;END=67800000;CN=4;SVLEN=800000 GT ./. chr11 67800000 GAIN:chr11:67800000-69300000 N . . IMPRECISE;SVTYPE=CNV;END=69300000;CN=5;SVLEN=1500000 GT ./. chr11 69300000 GAIN:chr11:69300000-69450000 N . . IMPRECISE;SVTYPE=CNV;END=69450000;CN=4;SVLEN=150000 GT ./. chr11 69450000 GAIN:chr11:69450000-69650000 N . . IMPRECISE;SVTYPE=CNV;END=69650000;CN=5;SVLEN=200000 GT ./. chr11 69650000 GAIN:chr11:69650000-69700000 N . . IMPRECISE;SVTYPE=CNV;END=69700000;CN=6;SVLEN=50000 GT ./. chr11 69700000 GAIN:chr11:69700000-70540097 N . . IMPRECISE;SVTYPE=CNV;END=70540097;CN=5;SVLEN=840097 GT ./. chr11 70700000 LOH:chr11:70700000-70955696 N . . IMPRECISE;SVTYPE=CNV;END=70955696;SVLEN=255696 GT ./. chr11 71055696 LOH:chr11:71055696-87978202 N . . IMPRECISE;SVTYPE=CNV;END=87978202;SVLEN=16922506 GT ./. chr11 88002896 LOH:chr11:88002896-96566178 N . . IMPRECISE;SVTYPE=CNV;END=96566178;SVLEN=8563282 GT ./. chr11 96566364 LOH:chr11:96566364-106408293 N . . IMPRECISE;SVTYPE=CNV;END=106408293;SVLEN=9841929 GT ./. chr11 106408293 LOSS:chr11:106408293-106417827 N . . IMPRECISE;SVTYPE=CNV;END=106417827;CN=0;SVLEN=9534 GT ./. chr11 106417827 LOH:chr11:106417827-135075284 N . . IMPRECISE;SVTYPE=CNV;END=135075284;SVLEN=28657457 GT ./. chr12 11873 GAIN:chr12:11873-100000 N . . IMPRECISE;SVTYPE=CNV;END=100000;CN=3;SVLEN=88127 GT ./. chr12 100000 GAINLOH:chr12:100000-150000 N , . . IMPRECISE;SVTYPE=CNV;END=150000;CN=3;SVLEN=50000 GT ./. chr12 150000 GAIN:chr12:150000-200000 N . . IMPRECISE;SVTYPE=CNV;END=200000;CN=3;SVLEN=50000 GT ./. chr12 200000 GAINLOH:chr12:200000-6900000 N , . . IMPRECISE;SVTYPE=CNV;END=6900000;CN=3;SVLEN=6700000 GT ./. chr12 6900000 GAINLOH:chr12:6900000-6950000 N , . . IMPRECISE;SVTYPE=CNV;END=6950000;CN=4;SVLEN=50000 GT ./. chr12 6950000 GAIN:chr12:6950000-7083650 N . . IMPRECISE;SVTYPE=CNV;END=7083650;CN=4;SVLEN=133650 GT ./. chr12 7084650 GAIN:chr12:7084650-9250000 N . . IMPRECISE;SVTYPE=CNV;END=9250000;CN=6;SVLEN=2165350 GT ./. chr12 9250000 GAIN:chr12:9250000-9550000 N . . IMPRECISE;SVTYPE=CNV;END=9550000;CN=4;SVLEN=300000 GT ./. chr12 9550000 GAIN:chr12:9550000-11100000 N . . IMPRECISE;SVTYPE=CNV;END=11100000;CN=5;SVLEN=1550000 GT ./. chr12 11100000 GAIN:chr12:11100000-11900000 N . . IMPRECISE;SVTYPE=CNV;END=11900000;CN=4;SVLEN=800000 GT ./. chr12 11900000 GAIN:chr12:11900000-12150000 N . . IMPRECISE;SVTYPE=CNV;END=12150000;CN=6;SVLEN=250000 GT ./. chr12 12150000 GAIN:chr12:12150000-13250000 N . . IMPRECISE;SVTYPE=CNV;END=13250000;CN=5;SVLEN=1100000 GT ./. chr12 13250000 GAIN:chr12:13250000-17500000 N . . IMPRECISE;SVTYPE=CNV;END=17500000;CN=4;SVLEN=4250000 GT ./. chr12 17500000 GAIN:chr12:17500000-22350000 N . . IMPRECISE;SVTYPE=CNV;END=22350000;CN=5;SVLEN=4850000 GT ./. chr12 22350000 GAIN:chr12:22350000-23950000 N . . IMPRECISE;SVTYPE=CNV;END=23950000;CN=4;SVLEN=1600000 GT ./. chr12 23950000 GAIN:chr12:23950000-26150000 N . . IMPRECISE;SVTYPE=CNV;END=26150000;CN=5;SVLEN=2200000 GT ./. chr12 26150000 GAIN:chr12:26150000-26600000 N . . IMPRECISE;SVTYPE=CNV;END=26600000;CN=4;SVLEN=450000 GT ./. chr12 26600000 GAIN:chr12:26600000-28250000 N . . IMPRECISE;SVTYPE=CNV;END=28250000;CN=3;SVLEN=1650000 GT ./. chr12 28250000 GAIN:chr12:28250000-28300000 N . . IMPRECISE;SVTYPE=CNV;END=28300000;CN=5;SVLEN=50000 GT ./. chr12 28300000 GAIN:chr12:28300000-28400000 N . . IMPRECISE;SVTYPE=CNV;END=28400000;CN=6;SVLEN=100000 GT ./. chr12 28400000 GAIN:chr12:28400000-29542139 N . . IMPRECISE;SVTYPE=CNV;END=29542139;CN=4;SVLEN=1142139 GT ./. chr12 29579774 GAIN:chr12:29579774-32160932 N . . IMPRECISE;SVTYPE=CNV;END=32160932;CN=3;SVLEN=2581158 GT ./. chr12 32171451 GAIN:chr12:32171451-32200000 N . . IMPRECISE;SVTYPE=CNV;END=32200000;CN=3;SVLEN=28549 GT ./. chr12 32200000 GAIN:chr12:32200000-34703735 N . . IMPRECISE;SVTYPE=CNV;END=34703735;CN=4;SVLEN=2503735 GT ./. chr12 37463012 LOH:chr12:37463012-67246240 N . . IMPRECISE;SVTYPE=CNV;END=67246240;SVLEN=29783228 GT ./. chr12 67246240 LOSS:chr12:67246240-67269949 N . . IMPRECISE;SVTYPE=CNV;END=67269949;CN=0;SVLEN=23709 GT ./. chr12 67269949 LOH:chr12:67269949-101583833 N . . IMPRECISE;SVTYPE=CNV;END=101583833;SVLEN=34313884 GT ./. chr12 101584092 LOH:chr12:101584092-132223362 N . . IMPRECISE;SVTYPE=CNV;END=132223362;SVLEN=30639270 GT ./. chr12 132224362 LOH:chr12:132224362-133260376 N . . IMPRECISE;SVTYPE=CNV;END=133260376;SVLEN=1036014 GT ./. chr13 18421446 GAIN:chr13:18421446-32300000 N . . IMPRECISE;SVTYPE=CNV;END=32300000;CN=3;SVLEN=13878554 GT ./. chr13 32300000 GAIN:chr13:32300000-32350000 N . . IMPRECISE;SVTYPE=CNV;END=32350000;CN=4;SVLEN=50000 GT ./. chr13 32350000 GAIN:chr13:32350000-36400000 N . . IMPRECISE;SVTYPE=CNV;END=36400000;CN=5;SVLEN=4050000 GT ./. chr13 36400000 GAIN:chr13:36400000-49008983 N . . IMPRECISE;SVTYPE=CNV;END=49008983;CN=4;SVLEN=12608983 GT ./. chr13 49008983 GAINLOH:chr13:49008983-49009059 N , . . IMPRECISE;SVTYPE=CNV;END=49009059;CN=4;SVLEN=76 GT ./. chr13 49009059 LOH:chr13:49009059-52686528 N . . IMPRECISE;SVTYPE=CNV;END=52686528;SVLEN=3677469 GT ./. chr13 52686528 LOSS:chr13:52686528-61000000 N . . IMPRECISE;SVTYPE=CNV;END=61000000;CN=0;SVLEN=8313472 GT ./. chr13 61000000 LOH:chr13:61000000-61300000 N . . IMPRECISE;SVTYPE=CNV;END=61300000;SVLEN=300000 GT ./. chr13 61350000 LOH:chr13:61350000-61400000 N . . IMPRECISE;SVTYPE=CNV;END=61400000;SVLEN=50000 GT ./. chr13 61500000 LOH:chr13:61500000-61700000 N . . IMPRECISE;SVTYPE=CNV;END=61700000;SVLEN=200000 GT ./. chr13 61750000 LOH:chr13:61750000-61850000 N . . IMPRECISE;SVTYPE=CNV;END=61850000;SVLEN=100000 GT ./. chr13 62050000 LOH:chr13:62050000-62100000 N . . IMPRECISE;SVTYPE=CNV;END=62100000;SVLEN=50000 GT ./. chr13 62200000 LOH:chr13:62200000-62250000 N . . IMPRECISE;SVTYPE=CNV;END=62250000;SVLEN=50000 GT ./. chr13 62350000 LOH:chr13:62350000-62400000 N . . IMPRECISE;SVTYPE=CNV;END=62400000;SVLEN=50000 GT ./. chr13 62450000 LOH:chr13:62450000-62500000 N . . IMPRECISE;SVTYPE=CNV;END=62500000;SVLEN=50000 GT ./. chr13 62650000 LOH:chr13:62650000-86202979 N . . IMPRECISE;SVTYPE=CNV;END=86202979;SVLEN=23552979 GT ./. chr13 86252979 LOH:chr13:86252979-111703855 N . . IMPRECISE;SVTYPE=CNV;END=111703855;SVLEN=25450876 GT ./. chr13 111753855 LOH:chr13:111753855-111793441 N . . IMPRECISE;SVTYPE=CNV;END=111793441;SVLEN=39586 GT ./. chr13 111843441 LOH:chr13:111843441-113673020 N . . IMPRECISE;SVTYPE=CNV;END=113673020;SVLEN=1829579 GT ./. chr13 113723020 LOH:chr13:113723020-114344377 N . . IMPRECISE;SVTYPE=CNV;END=114344377;SVLEN=621357 GT ./. chr14 18224243 GAIN:chr14:18224243-18600000 N . . IMPRECISE;SVTYPE=CNV;END=18600000;CN=4;SVLEN=375757 GT ./. chr14 18600000 GAIN:chr14:18600000-18700000 N . . IMPRECISE;SVTYPE=CNV;END=18700000;CN=5;SVLEN=100000 GT ./. chr14 18700000 GAIN:chr14:18700000-18712644 N . . IMPRECISE;SVTYPE=CNV;END=18712644;CN=4;SVLEN=12644 GT ./. chr14 18862644 GAIN:chr14:18862644-19511713 N . . IMPRECISE;SVTYPE=CNV;END=19511713;CN=4;SVLEN=649069 GT ./. chr14 19611713 GAIN:chr14:19611713-19900000 N . . IMPRECISE;SVTYPE=CNV;END=19900000;CN=6;SVLEN=288287 GT ./. chr14 19900000 GAIN:chr14:19900000-25950000 N . . IMPRECISE;SVTYPE=CNV;END=25950000;CN=4;SVLEN=6050000 GT ./. chr14 25950000 GAIN:chr14:25950000-26000000 N . . IMPRECISE;SVTYPE=CNV;END=26000000;CN=5;SVLEN=50000 GT ./. chr14 26000000 GAIN:chr14:26000000-28400000 N . . IMPRECISE;SVTYPE=CNV;END=28400000;CN=4;SVLEN=2400000 GT ./. chr14 28400000 GAIN:chr14:28400000-28450000 N . . IMPRECISE;SVTYPE=CNV;END=28450000;CN=5;SVLEN=50000 GT ./. chr14 28450000 GAIN:chr14:28450000-28950000 N . . IMPRECISE;SVTYPE=CNV;END=28950000;CN=4;SVLEN=500000 GT ./. chr14 28950000 GAIN:chr14:28950000-29000000 N . . IMPRECISE;SVTYPE=CNV;END=29000000;CN=5;SVLEN=50000 GT ./. chr14 29000000 GAIN:chr14:29000000-30400000 N . . IMPRECISE;SVTYPE=CNV;END=30400000;CN=4;SVLEN=1400000 GT ./. chr14 30400000 GAIN:chr14:30400000-30450000 N . . IMPRECISE;SVTYPE=CNV;END=30450000;CN=5;SVLEN=50000 GT ./. chr14 30450000 GAIN:chr14:30450000-31700000 N . . IMPRECISE;SVTYPE=CNV;END=31700000;CN=4;SVLEN=1250000 GT ./. chr14 31700000 GAIN:chr14:31700000-31750000 N . . IMPRECISE;SVTYPE=CNV;END=31750000;CN=5;SVLEN=50000 GT ./. chr14 31750000 GAIN:chr14:31750000-32600000 N . . IMPRECISE;SVTYPE=CNV;END=32600000;CN=4;SVLEN=850000 GT ./. chr14 32600000 GAIN:chr14:32600000-32650000 N . . IMPRECISE;SVTYPE=CNV;END=32650000;CN=5;SVLEN=50000 GT ./. chr14 32650000 GAIN:chr14:32650000-32700000 N . . IMPRECISE;SVTYPE=CNV;END=32700000;CN=4;SVLEN=50000 GT ./. chr14 32700000 GAIN:chr14:32700000-32750000 N . . IMPRECISE;SVTYPE=CNV;END=32750000;CN=5;SVLEN=50000 GT ./. chr14 32750000 GAIN:chr14:32750000-35650000 N . . IMPRECISE;SVTYPE=CNV;END=35650000;CN=4;SVLEN=2900000 GT ./. chr14 35650000 GAIN:chr14:35650000-35700000 N . . IMPRECISE;SVTYPE=CNV;END=35700000;CN=5;SVLEN=50000 GT ./. chr14 35700000 GAIN:chr14:35700000-36140901 N . . IMPRECISE;SVTYPE=CNV;END=36140901;CN=4;SVLEN=440901 GT ./. chr14 36150000 LOH:chr14:36150000-45764972 N . . IMPRECISE;SVTYPE=CNV;END=45764972;SVLEN=9614972 GT ./. chr14 45764972 GAINLOH:chr14:45764972-45765292 N , . . IMPRECISE;SVTYPE=CNV;END=45765292;CN=4;SVLEN=320 GT ./. chr14 45765292 GAIN:chr14:45765292-60327129 N . . IMPRECISE;SVTYPE=CNV;END=60327129;CN=4;SVLEN=14561837 GT ./. chr14 60327870 LOH:chr14:60327870-64950000 N . . IMPRECISE;SVTYPE=CNV;END=64950000;SVLEN=4622130 GT ./. chr14 64983912 GAIN:chr14:64983912-67900000 N . . IMPRECISE;SVTYPE=CNV;END=67900000;CN=4;SVLEN=2916088 GT ./. chr14 67900000 GAIN:chr14:67900000-67950000 N . . IMPRECISE;SVTYPE=CNV;END=67950000;CN=5;SVLEN=50000 GT ./. chr14 67950000 GAIN:chr14:67950000-68100000 N . . IMPRECISE;SVTYPE=CNV;END=68100000;CN=4;SVLEN=150000 GT ./. chr14 68100000 GAIN:chr14:68100000-68200000 N . . IMPRECISE;SVTYPE=CNV;END=68200000;CN=5;SVLEN=100000 GT ./. chr14 68200000 GAIN:chr14:68200000-68900000 N . . IMPRECISE;SVTYPE=CNV;END=68900000;CN=4;SVLEN=700000 GT ./. chr14 68900000 GAIN:chr14:68900000-69000000 N . . IMPRECISE;SVTYPE=CNV;END=69000000;CN=5;SVLEN=100000 GT ./. chr14 69000000 GAIN:chr14:69000000-69539684 N . . IMPRECISE;SVTYPE=CNV;END=69539684;CN=4;SVLEN=539684 GT ./. chr14 69550000 LOH:chr14:69550000-74938291 N . . IMPRECISE;SVTYPE=CNV;END=74938291;SVLEN=5388291 GT ./. chr14 74938291 GAINLOH:chr14:74938291-74943473 N , . . IMPRECISE;SVTYPE=CNV;END=74943473;CN=4;SVLEN=5182 GT ./. chr14 74943473 GAIN:chr14:74943473-74970369 N . . IMPRECISE;SVTYPE=CNV;END=74970369;CN=4;SVLEN=26896 GT ./. chr14 74970369 GAINLOH:chr14:74970369-75663961 N , . . IMPRECISE;SVTYPE=CNV;END=75663961;CN=4;SVLEN=693592 GT ./. chr14 75663961 GAIN:chr14:75663961-76288287 N . . IMPRECISE;SVTYPE=CNV;END=76288287;CN=4;SVLEN=624326 GT ./. chr14 76288287 GAINLOH:chr14:76288287-81700000 N , . . IMPRECISE;SVTYPE=CNV;END=81700000;CN=4;SVLEN=5411713 GT ./. chr14 81700000 GAINLOH:chr14:81700000-81720021 N , . . IMPRECISE;SVTYPE=CNV;END=81720021;CN=5;SVLEN=20021 GT ./. chr14 81720021 GAIN:chr14:81720021-81720497 N . . IMPRECISE;SVTYPE=CNV;END=81720497;CN=5;SVLEN=476 GT ./. chr14 81720497 GAINLOH:chr14:81720497-81722560 N , . . IMPRECISE;SVTYPE=CNV;END=81722560;CN=5;SVLEN=2063 GT ./. chr14 81722560 GAIN:chr14:81722560-81750000 N . . IMPRECISE;SVTYPE=CNV;END=81750000;CN=5;SVLEN=27440 GT ./. chr14 81750000 GAIN:chr14:81750000-84200000 N . . IMPRECISE;SVTYPE=CNV;END=84200000;CN=6;SVLEN=2450000 GT ./. chr14 84200000 GAIN:chr14:84200000-90950000 N . . IMPRECISE;SVTYPE=CNV;END=90950000;CN=7;SVLEN=6750000 GT ./. chr14 90950000 GAIN:chr14:90950000-94150000 N . . IMPRECISE;SVTYPE=CNV;END=94150000;CN=6;SVLEN=3200000 GT ./. chr14 94150000 GAIN:chr14:94150000-96400000 N . . IMPRECISE;SVTYPE=CNV;END=96400000;CN=8;SVLEN=2250000 GT ./. chr14 96400000 GAIN:chr14:96400000-97755031 N . . IMPRECISE;SVTYPE=CNV;END=97755031;CN=6;SVLEN=1355031 GT ./. chr14 97755031 GAINLOH:chr14:97755031-99900000 N , . . IMPRECISE;SVTYPE=CNV;END=99900000;CN=6;SVLEN=2144969 GT ./. chr14 99900000 GAINLOH:chr14:99900000-101098668 N , . . IMPRECISE;SVTYPE=CNV;END=101098668;CN=4;SVLEN=1198668 GT ./. chr14 101098668 GAIN:chr14:101098668-101098669 N . . IMPRECISE;SVTYPE=CNV;END=101098669;CN=4;SVLEN=1 GT ./. chr14 101098669 GAINLOH:chr14:101098669-104400000 N , . . IMPRECISE;SVTYPE=CNV;END=104400000;CN=4;SVLEN=3301331 GT ./. chr14 104400000 GAINLOH:chr14:104400000-105850000 N , . . IMPRECISE;SVTYPE=CNV;END=105850000;CN=3;SVLEN=1450000 GT ./. chr14 105850000 GAINLOH:chr14:105850000-105900000 N , . . IMPRECISE;SVTYPE=CNV;END=105900000;CN=4;SVLEN=50000 GT ./. chr14 105900000 GAIN:chr14:105900000-105950000 N . . IMPRECISE;SVTYPE=CNV;END=105950000;CN=87;SVLEN=50000 GT ./. chr14 105950000 GAIN:chr14:105950000-106050000 N . . IMPRECISE;SVTYPE=CNV;END=106050000;CN=96;SVLEN=100000 GT ./. chr14 106050000 GAIN:chr14:106050000-106100000 N . . IMPRECISE;SVTYPE=CNV;END=106100000;CN=35;SVLEN=50000 GT ./. chr14 106100000 GAIN:chr14:106100000-106150000 N . . IMPRECISE;SVTYPE=CNV;END=106150000;CN=95;SVLEN=50000 GT ./. chr14 106150000 GAIN:chr14:106150000-106200000 N . . IMPRECISE;SVTYPE=CNV;END=106200000;CN=88;SVLEN=50000 GT ./. chr14 106200000 GAIN:chr14:106200000-106300000 N . . IMPRECISE;SVTYPE=CNV;END=106300000;CN=11;SVLEN=100000 GT ./. chr14 106300000 GAIN:chr14:106300000-106350000 N . . IMPRECISE;SVTYPE=CNV;END=106350000;CN=4;SVLEN=50000 GT ./. chr14 106350000 GAIN:chr14:106350000-106400000 N . . IMPRECISE;SVTYPE=CNV;END=106400000;CN=3;SVLEN=50000 GT ./. chr14 106400000 GAINLOH:chr14:106400000-106419864 N , . . IMPRECISE;SVTYPE=CNV;END=106419864;CN=3;SVLEN=19864 GT ./. chr14 106419864 GAIN:chr14:106419864-106481016 N . . IMPRECISE;SVTYPE=CNV;END=106481016;CN=3;SVLEN=61152 GT ./. chr14 106481016 GAINLOH:chr14:106481016-106717018 N , . . IMPRECISE;SVTYPE=CNV;END=106717018;CN=3;SVLEN=236002 GT ./. chr14 106717018 LOH:chr14:106717018-106750000 N . . IMPRECISE;SVTYPE=CNV;END=106750000;SVLEN=32982 GT ./. chr14 106750000 GAINLOH:chr14:106750000-106881166 N , . . IMPRECISE;SVTYPE=CNV;END=106881166;CN=3;SVLEN=131166 GT ./. chr14 106881166 GAIN:chr14:106881166-106883557 N . . IMPRECISE;SVTYPE=CNV;END=106883557;CN=3;SVLEN=2391 GT ./. chr15 20095677 GAIN:chr15:20095677-20428270 N . . IMPRECISE;SVTYPE=CNV;END=20428270;CN=3;SVLEN=332593 GT ./. chr15 20583248 GAIN:chr15:20583248-20673583 N . . IMPRECISE;SVTYPE=CNV;END=20673583;CN=3;SVLEN=90335 GT ./. chr15 21000000 GAIN:chr15:21000000-21100000 N . . IMPRECISE;SVTYPE=CNV;END=21100000;CN=3;SVLEN=100000 GT ./. chr15 21150000 GAIN:chr15:21150000-21193490 N . . IMPRECISE;SVTYPE=CNV;END=21193490;CN=3;SVLEN=43490 GT ./. chr15 21242090 GAIN:chr15:21242090-21268965 N . . IMPRECISE;SVTYPE=CNV;END=21268965;CN=3;SVLEN=26875 GT ./. chr15 22569998 LOH:chr15:22569998-23226874 N . . IMPRECISE;SVTYPE=CNV;END=23226874;SVLEN=656876 GT ./. chr15 23276874 LOH:chr15:23276874-34429787 N . . IMPRECISE;SVTYPE=CNV;END=34429787;SVLEN=11152913 GT ./. chr15 34429787 LOSS:chr15:34429787-34526798 N . . IMPRECISE;SVTYPE=CNV;END=34526798;CN=0;SVLEN=97011 GT ./. chr15 34526798 LOH:chr15:34526798-55610723 N . . IMPRECISE;SVTYPE=CNV;END=55610723;SVLEN=21083925 GT ./. chr15 55610723 GAINLOH:chr15:55610723-55611368 N , . . IMPRECISE;SVTYPE=CNV;END=55611368;CN=4;SVLEN=645 GT ./. chr15 55611368 GAIN:chr15:55611368-55650000 N . . IMPRECISE;SVTYPE=CNV;END=55650000;CN=4;SVLEN=38632 GT ./. chr15 55650000 GAIN:chr15:55650000-59450000 N . . IMPRECISE;SVTYPE=CNV;END=59450000;CN=5;SVLEN=3800000 GT ./. chr15 59450000 GAIN:chr15:59450000-59500000 N . . IMPRECISE;SVTYPE=CNV;END=59500000;CN=4;SVLEN=50000 GT ./. chr15 59500000 GAIN:chr15:59500000-68850000 N . . IMPRECISE;SVTYPE=CNV;END=68850000;CN=5;SVLEN=9350000 GT ./. chr15 68850000 GAIN:chr15:68850000-71300000 N . . IMPRECISE;SVTYPE=CNV;END=71300000;CN=4;SVLEN=2450000 GT ./. chr15 71300000 GAIN:chr15:71300000-71850000 N . . IMPRECISE;SVTYPE=CNV;END=71850000;CN=5;SVLEN=550000 GT ./. chr15 71850000 GAIN:chr15:71850000-71900000 N . . IMPRECISE;SVTYPE=CNV;END=71900000;CN=5;SVLEN=50000 GT ./. chr15 71900000 GAIN:chr15:71900000-77000000 N . . IMPRECISE;SVTYPE=CNV;END=77000000;CN=4;SVLEN=5100000 GT ./. chr15 77000000 GAIN:chr15:77000000-77050000 N . . IMPRECISE;SVTYPE=CNV;END=77050000;CN=5;SVLEN=50000 GT ./. chr15 77050000 GAIN:chr15:77050000-77650000 N . . IMPRECISE;SVTYPE=CNV;END=77650000;CN=4;SVLEN=600000 GT ./. chr15 77650000 GAIN:chr15:77650000-82500000 N . . IMPRECISE;SVTYPE=CNV;END=82500000;CN=3;SVLEN=4850000 GT ./. chr15 82500000 GAIN:chr15:82500000-84270066 N . . IMPRECISE;SVTYPE=CNV;END=84270066;CN=4;SVLEN=1770066 GT ./. chr15 84320066 GAIN:chr15:84320066-87900000 N . . IMPRECISE;SVTYPE=CNV;END=87900000;CN=4;SVLEN=3579934 GT ./. chr15 87900000 GAIN:chr15:87900000-90350000 N . . IMPRECISE;SVTYPE=CNV;END=90350000;CN=5;SVLEN=2450000 GT ./. chr15 90350000 GAIN:chr15:90350000-91250000 N . . IMPRECISE;SVTYPE=CNV;END=91250000;CN=4;SVLEN=900000 GT ./. chr15 91250000 GAIN:chr15:91250000-91400000 N . . IMPRECISE;SVTYPE=CNV;END=91400000;CN=5;SVLEN=150000 GT ./. chr15 91400000 GAIN:chr15:91400000-93050000 N . . IMPRECISE;SVTYPE=CNV;END=93050000;CN=6;SVLEN=1650000 GT ./. chr15 93050000 GAIN:chr15:93050000-93100000 N . . IMPRECISE;SVTYPE=CNV;END=93100000;CN=5;SVLEN=50000 GT ./. chr15 93100000 GAIN:chr15:93100000-94750000 N . . IMPRECISE;SVTYPE=CNV;END=94750000;CN=6;SVLEN=1650000 GT ./. chr15 94750000 GAIN:chr15:94750000-94800000 N . . IMPRECISE;SVTYPE=CNV;END=94800000;CN=5;SVLEN=50000 GT ./. chr15 94800000 GAIN:chr15:94800000-99800000 N . . IMPRECISE;SVTYPE=CNV;END=99800000;CN=6;SVLEN=5000000 GT ./. chr15 99800000 GAIN:chr15:99800000-101150000 N . . IMPRECISE;SVTYPE=CNV;END=101150000;CN=5;SVLEN=1350000 GT ./. chr15 101150000 GAIN:chr15:101150000-101850000 N . . IMPRECISE;SVTYPE=CNV;END=101850000;CN=6;SVLEN=700000 GT ./. chr15 101850000 GAIN:chr15:101850000-101980551 N . . IMPRECISE;SVTYPE=CNV;END=101980551;CN=5;SVLEN=130551 GT ./. chr16 34047 GAIN:chr16:34047-10050000 N . . IMPRECISE;SVTYPE=CNV;END=10050000;CN=3;SVLEN=10015953 GT ./. chr16 10050000 GAIN:chr16:10050000-10100000 N . . IMPRECISE;SVTYPE=CNV;END=10100000;CN=4;SVLEN=50000 GT ./. chr16 10100000 GAIN:chr16:10100000-16600000 N . . IMPRECISE;SVTYPE=CNV;END=16600000;CN=5;SVLEN=6500000 GT ./. chr16 16600000 GAIN:chr16:16600000-16750000 N . . IMPRECISE;SVTYPE=CNV;END=16750000;CN=6;SVLEN=150000 GT ./. chr16 16750000 GAIN:chr16:16750000-18436486 N . . IMPRECISE;SVTYPE=CNV;END=18436486;CN=5;SVLEN=1686486 GT ./. chr16 18486486 GAIN:chr16:18486486-19150000 N . . IMPRECISE;SVTYPE=CNV;END=19150000;CN=5;SVLEN=663514 GT ./. chr16 19150000 GAIN:chr16:19150000-21500000 N . . IMPRECISE;SVTYPE=CNV;END=21500000;CN=6;SVLEN=2350000 GT ./. chr16 21500000 GAIN:chr16:21500000-21600000 N . . IMPRECISE;SVTYPE=CNV;END=21600000;CN=5;SVLEN=100000 GT ./. chr16 21600000 GAIN:chr16:21600000-21650000 N . . IMPRECISE;SVTYPE=CNV;END=21650000;CN=4;SVLEN=50000 GT ./. chr16 21650000 GAIN:chr16:21650000-22550000 N . . IMPRECISE;SVTYPE=CNV;END=22550000;CN=6;SVLEN=900000 GT ./. chr16 22550000 GAIN:chr16:22550000-22700000 N . . IMPRECISE;SVTYPE=CNV;END=22700000;CN=5;SVLEN=150000 GT ./. chr16 22700000 GAIN:chr16:22700000-30750000 N . . IMPRECISE;SVTYPE=CNV;END=30750000;CN=4;SVLEN=8050000 GT ./. chr16 30750000 GAIN:chr16:30750000-33100000 N . . IMPRECISE;SVTYPE=CNV;END=33100000;CN=5;SVLEN=2350000 GT ./. chr16 33100000 GAIN:chr16:33100000-33214595 N . . IMPRECISE;SVTYPE=CNV;END=33214595;CN=4;SVLEN=114595 GT ./. chr16 33264595 GAIN:chr16:33264595-33392411 N . . IMPRECISE;SVTYPE=CNV;END=33392411;CN=4;SVLEN=127816 GT ./. chr16 33442411 GAIN:chr16:33442411-34289329 N . . IMPRECISE;SVTYPE=CNV;END=34289329;CN=4;SVLEN=846918 GT ./. chr16 34339329 GAIN:chr16:34339329-34414951 N . . IMPRECISE;SVTYPE=CNV;END=34414951;CN=6;SVLEN=75622 GT ./. chr16 34450000 GAIN:chr16:34450000-34504948 N . . IMPRECISE;SVTYPE=CNV;END=34504948;CN=6;SVLEN=54948 GT ./. chr16 34571510 GAIN:chr16:34571510-34576805 N . . IMPRECISE;SVTYPE=CNV;END=34576805;CN=8;SVLEN=5295 GT ./. chr16 34580965 GAIN:chr16:34580965-34584085 N . . IMPRECISE;SVTYPE=CNV;END=34584085;CN=8;SVLEN=3120 GT ./. chr16 34584622 GAIN:chr16:34584622-35000000 N . . IMPRECISE;SVTYPE=CNV;END=35000000;CN=7;SVLEN=415378 GT ./. chr16 35000000 GAIN:chr16:35000000-35250000 N . . IMPRECISE;SVTYPE=CNV;END=35250000;CN=6;SVLEN=250000 GT ./. chr16 35250000 GAIN:chr16:35250000-35550000 N . . IMPRECISE;SVTYPE=CNV;END=35550000;CN=5;SVLEN=300000 GT ./. chr16 35550000 GAIN:chr16:35550000-36259694 N . . IMPRECISE;SVTYPE=CNV;END=36259694;CN=6;SVLEN=709694 GT ./. chr17 150000 GAIN:chr17:150000-173526 N . . IMPRECISE;SVTYPE=CNV;END=173526;CN=3;SVLEN=23526 GT ./. chr17 173526 GAINLOH:chr17:173526-448188 N , . . IMPRECISE;SVTYPE=CNV;END=448188;CN=3;SVLEN=274662 GT ./. chr17 488987 GAINLOH:chr17:488987-490395 N , . . IMPRECISE;SVTYPE=CNV;END=490395;CN=3;SVLEN=1408 GT ./. chr17 491111 GAINLOH:chr17:491111-19024413 N , . . IMPRECISE;SVTYPE=CNV;END=19024413;CN=3;SVLEN=18533302 GT ./. chr17 19024413 LOH:chr17:19024413-21795850 N . . IMPRECISE;SVTYPE=CNV;END=21795850;SVLEN=2771437 GT ./. chr17 21814103 LOH:chr17:21814103-21860937 N . . IMPRECISE;SVTYPE=CNV;END=21860937;SVLEN=46834 GT ./. chr17 21860957 LOH:chr17:21860957-21976511 N . . IMPRECISE;SVTYPE=CNV;END=21976511;SVLEN=115554 GT ./. chr17 21983554 LOH:chr17:21983554-21984549 N . . IMPRECISE;SVTYPE=CNV;END=21984549;SVLEN=995 GT ./. chr17 21985100 LOH:chr17:21985100-21992061 N . . IMPRECISE;SVTYPE=CNV;END=21992061;SVLEN=6961 GT ./. chr17 22089410 LOH:chr17:22089410-22745170 N . . IMPRECISE;SVTYPE=CNV;END=22745170;SVLEN=655760 GT ./. chr17 26982284 LOH:chr17:26982284-67221520 N . . IMPRECISE;SVTYPE=CNV;END=67221520;SVLEN=40239236 GT ./. chr17 67222405 GAIN:chr17:67222405-67250000 N . . IMPRECISE;SVTYPE=CNV;END=67250000;CN=5;SVLEN=27595 GT ./. chr17 67250000 GAINLOH:chr17:67250000-69650000 N , . . IMPRECISE;SVTYPE=CNV;END=69650000;CN=5;SVLEN=2400000 GT ./. chr17 69650000 GAINLOH:chr17:69650000-70950000 N , . . IMPRECISE;SVTYPE=CNV;END=70950000;CN=6;SVLEN=1300000 GT ./. chr17 70950000 GAINLOH:chr17:70950000-71000000 N , . . IMPRECISE;SVTYPE=CNV;END=71000000;CN=5;SVLEN=50000 GT ./. chr17 71000000 GAINLOH:chr17:71000000-71950000 N , . . IMPRECISE;SVTYPE=CNV;END=71950000;CN=6;SVLEN=950000 GT ./. chr17 71950000 GAINLOH:chr17:71950000-72000000 N , . . IMPRECISE;SVTYPE=CNV;END=72000000;CN=5;SVLEN=50000 GT ./. chr17 72000000 GAINLOH:chr17:72000000-72043252 N , . . IMPRECISE;SVTYPE=CNV;END=72043252;CN=6;SVLEN=43252 GT ./. chr17 72043252 GAIN:chr17:72043252-72052762 N . . IMPRECISE;SVTYPE=CNV;END=72052762;CN=6;SVLEN=9510 GT ./. chr17 72052762 GAINLOH:chr17:72052762-72150000 N , . . IMPRECISE;SVTYPE=CNV;END=72150000;CN=6;SVLEN=97238 GT ./. chr17 72150000 GAINLOH:chr17:72150000-72700000 N , . . IMPRECISE;SVTYPE=CNV;END=72700000;CN=5;SVLEN=550000 GT ./. chr17 72700000 GAIN:chr17:72700000-72716141 N . . IMPRECISE;SVTYPE=CNV;END=72716141;CN=5;SVLEN=16141 GT ./. chr17 72716141 GAINLOH:chr17:72716141-72716351 N , . . IMPRECISE;SVTYPE=CNV;END=72716351;CN=5;SVLEN=210 GT ./. chr17 72716351 GAIN:chr17:72716351-72716613 N . . IMPRECISE;SVTYPE=CNV;END=72716613;CN=5;SVLEN=262 GT ./. chr17 72716613 GAINLOH:chr17:72716613-72850000 N , . . IMPRECISE;SVTYPE=CNV;END=72850000;CN=5;SVLEN=133387 GT ./. chr17 72850000 GAIN:chr17:72850000-72900000 N . . IMPRECISE;SVTYPE=CNV;END=72900000;CN=4;SVLEN=50000 GT ./. chr17 72900000 GAINLOH:chr17:72900000-76200000 N , . . IMPRECISE;SVTYPE=CNV;END=76200000;CN=4;SVLEN=3300000 GT ./. chr17 76200000 GAIN:chr17:76200000-76223761 N . . IMPRECISE;SVTYPE=CNV;END=76223761;CN=4;SVLEN=23761 GT ./. chr17 76223761 GAINLOH:chr17:76223761-79965557 N , . . IMPRECISE;SVTYPE=CNV;END=79965557;CN=4;SVLEN=3741796 GT ./. chr17 79965557 GAIN:chr17:79965557-80000000 N . . IMPRECISE;SVTYPE=CNV;END=80000000;CN=4;SVLEN=34443 GT ./. chr17 80000000 GAIN:chr17:80000000-80543532 N . . IMPRECISE;SVTYPE=CNV;END=80543532;CN=5;SVLEN=543532 GT ./. chr17 80543532 GAINLOH:chr17:80543532-81742542 N , . . IMPRECISE;SVTYPE=CNV;END=81742542;CN=5;SVLEN=1199010 GT ./. chr17 81792542 GAINLOH:chr17:81792542-81796281 N , . . IMPRECISE;SVTYPE=CNV;END=81796281;CN=5;SVLEN=3739 GT ./. chr17 81797727 GAINLOH:chr17:81797727-81798717 N , . . IMPRECISE;SVTYPE=CNV;END=81798717;CN=5;SVLEN=990 GT ./. chr17 81799133 GAINLOH:chr17:81799133-82600000 N , . . IMPRECISE;SVTYPE=CNV;END=82600000;CN=5;SVLEN=800867 GT ./. chr17 82600000 GAINLOH:chr17:82600000-82700000 N , . . IMPRECISE;SVTYPE=CNV;END=82700000;CN=3;SVLEN=100000 GT ./. chr17 82700000 GAIN:chr17:82700000-83237603 N . . IMPRECISE;SVTYPE=CNV;END=83237603;CN=3;SVLEN=537603 GT ./. chr18 45446 LOH:chr18:45446-50000 N . . IMPRECISE;SVTYPE=CNV;END=50000;SVLEN=4554 GT ./. chr18 63467 LOH:chr18:63467-8803733 N . . IMPRECISE;SVTYPE=CNV;END=8803733;SVLEN=8740266 GT ./. chr18 8803733 LOSS:chr18:8803733-8817082 N . . IMPRECISE;SVTYPE=CNV;END=8817082;CN=0;SVLEN=13349 GT ./. chr18 8817082 LOH:chr18:8817082-11457192 N . . IMPRECISE;SVTYPE=CNV;END=11457192;SVLEN=2640110 GT ./. chr18 11457192 GAINLOH:chr18:11457192-11458607 N , . . IMPRECISE;SVTYPE=CNV;END=11458607;CN=6;SVLEN=1415 GT ./. chr18 11458607 GAIN:chr18:11458607-11550000 N . . IMPRECISE;SVTYPE=CNV;END=11550000;CN=6;SVLEN=91393 GT ./. chr18 11550000 GAIN:chr18:11550000-11600000 N . . IMPRECISE;SVTYPE=CNV;END=11600000;CN=5;SVLEN=50000 GT ./. chr18 11600000 GAIN:chr18:11600000-15350000 N . . IMPRECISE;SVTYPE=CNV;END=15350000;CN=4;SVLEN=3750000 GT ./. chr18 15350000 GAIN:chr18:15350000-15400000 N . . IMPRECISE;SVTYPE=CNV;END=15400000;CN=5;SVLEN=50000 GT ./. chr18 15400000 GAIN:chr18:15400000-15410899 N . . IMPRECISE;SVTYPE=CNV;END=15410899;CN=4;SVLEN=10899 GT ./. chr18 15460899 GAIN:chr18:15460899-15780377 N . . IMPRECISE;SVTYPE=CNV;END=15780377;CN=5;SVLEN=319478 GT ./. chr18 15780477 GAIN:chr18:15780477-15788380 N . . IMPRECISE;SVTYPE=CNV;END=15788380;CN=5;SVLEN=7903 GT ./. chr18 15791047 GAIN:chr18:15791047-15797755 N . . IMPRECISE;SVTYPE=CNV;END=15797755;CN=5;SVLEN=6708 GT ./. chr18 15797855 GAIN:chr18:15797855-17400000 N . . IMPRECISE;SVTYPE=CNV;END=17400000;CN=5;SVLEN=1602145 GT ./. chr18 17400000 GAIN:chr18:17400000-17800000 N . . IMPRECISE;SVTYPE=CNV;END=17800000;CN=4;SVLEN=400000 GT ./. chr18 17800000 GAIN:chr18:17800000-18100000 N . . IMPRECISE;SVTYPE=CNV;END=18100000;CN=5;SVLEN=300000 GT ./. chr18 18100000 GAIN:chr18:18100000-18400000 N . . IMPRECISE;SVTYPE=CNV;END=18400000;CN=4;SVLEN=300000 GT ./. chr18 18400000 GAIN:chr18:18400000-18700000 N . . IMPRECISE;SVTYPE=CNV;END=18700000;CN=5;SVLEN=300000 GT ./. chr18 18700000 GAIN:chr18:18700000-18950000 N . . IMPRECISE;SVTYPE=CNV;END=18950000;CN=4;SVLEN=250000 GT ./. chr18 18950000 GAIN:chr18:18950000-19450000 N . . IMPRECISE;SVTYPE=CNV;END=19450000;CN=5;SVLEN=500000 GT ./. chr18 19450000 GAIN:chr18:19450000-19800000 N . . IMPRECISE;SVTYPE=CNV;END=19800000;CN=4;SVLEN=350000 GT ./. chr18 19800000 GAIN:chr18:19800000-20561439 N . . IMPRECISE;SVTYPE=CNV;END=20561439;CN=5;SVLEN=761439 GT ./. chr18 20561539 GAIN:chr18:20561539-20564714 N . . IMPRECISE;SVTYPE=CNV;END=20564714;CN=5;SVLEN=3175 GT ./. chr18 20571466 GAIN:chr18:20571466-20582635 N . . IMPRECISE;SVTYPE=CNV;END=20582635;CN=5;SVLEN=11169 GT ./. chr18 20582735 GAIN:chr18:20582735-20603147 N . . IMPRECISE;SVTYPE=CNV;END=20603147;CN=5;SVLEN=20412 GT ./. chr18 20603247 GAIN:chr18:20603247-20696289 N . . IMPRECISE;SVTYPE=CNV;END=20696289;CN=5;SVLEN=93042 GT ./. chr18 20696389 GAIN:chr18:20696389-20736025 N . . IMPRECISE;SVTYPE=CNV;END=20736025;CN=5;SVLEN=39636 GT ./. chr18 20736125 GAIN:chr18:20736125-20813083 N . . IMPRECISE;SVTYPE=CNV;END=20813083;CN=5;SVLEN=76958 GT ./. chr18 20813183 GAIN:chr18:20813183-20830724 N . . IMPRECISE;SVTYPE=CNV;END=20830724;CN=5;SVLEN=17541 GT ./. chr18 20831341 GAIN:chr18:20831341-20835547 N . . IMPRECISE;SVTYPE=CNV;END=20835547;CN=5;SVLEN=4206 GT ./. chr18 20835592 GAIN:chr18:20835592-20839697 N . . IMPRECISE;SVTYPE=CNV;END=20839697;CN=5;SVLEN=4105 GT ./. chr18 20839797 GAIN:chr18:20839797-20850000 N . . IMPRECISE;SVTYPE=CNV;END=20850000;CN=5;SVLEN=10203 GT ./. chr18 20911206 GAIN:chr18:20911206-26100000 N . . IMPRECISE;SVTYPE=CNV;END=26100000;CN=5;SVLEN=5188794 GT ./. chr18 26100000 GAIN:chr18:26100000-46969912 N . . IMPRECISE;SVTYPE=CNV;END=46969912;CN=4;SVLEN=20869912 GT ./. chr18 47019912 GAIN:chr18:47019912-48900000 N . . IMPRECISE;SVTYPE=CNV;END=48900000;CN=4;SVLEN=1880088 GT ./. chr18 48900000 GAIN:chr18:48900000-48950000 N . . IMPRECISE;SVTYPE=CNV;END=48950000;CN=5;SVLEN=50000 GT ./. chr18 48950000 GAIN:chr18:48950000-53600000 N . . IMPRECISE;SVTYPE=CNV;END=53600000;CN=4;SVLEN=4650000 GT ./. chr18 53600000 GAIN:chr18:53600000-54536574 N . . IMPRECISE;SVTYPE=CNV;END=54536574;CN=6;SVLEN=936574 GT ./. chr18 54537528 GAIN:chr18:54537528-57600000 N . . IMPRECISE;SVTYPE=CNV;END=57600000;CN=6;SVLEN=3062472 GT ./. chr18 57600000 GAIN:chr18:57600000-57746012 N . . IMPRECISE;SVTYPE=CNV;END=57746012;CN=5;SVLEN=146012 GT ./. chr18 57746012 GAINLOH:chr18:57746012-57750000 N , . . IMPRECISE;SVTYPE=CNV;END=57750000;CN=5;SVLEN=3988 GT ./. chr18 57750000 GAINLOH:chr18:57750000-58627944 N , . . IMPRECISE;SVTYPE=CNV;END=58627944;CN=3;SVLEN=877944 GT ./. chr18 58627944 LOH:chr18:58627944-58733375 N . . IMPRECISE;SVTYPE=CNV;END=58733375;SVLEN=105431 GT ./. chr18 58733412 LOSS:chr18:58733412-79083993 N . . IMPRECISE;SVTYPE=CNV;END=79083993;CN=1;SVLEN=20350581 GT ./. chr18 79323770 LOSS:chr18:79323770-80256374 N . . IMPRECISE;SVTYPE=CNV;END=80256374;CN=1;SVLEN=932604 GT ./. chr18 80256374 LOH:chr18:80256374-80259181 N . . IMPRECISE;SVTYPE=CNV;END=80259181;SVLEN=2807 GT ./. chr19 235024 LOH:chr19:235024-250000 N . . IMPRECISE;SVTYPE=CNV;END=250000;SVLEN=14976 GT ./. chr19 253585 LOH:chr19:253585-11983165 N . . IMPRECISE;SVTYPE=CNV;END=11983165;SVLEN=11729580 GT ./. chr19 11983165 GAINLOH:chr19:11983165-11983528 N , . . IMPRECISE;SVTYPE=CNV;END=11983528;CN=4;SVLEN=363 GT ./. chr19 11983528 GAIN:chr19:11983528-16958085 N . . IMPRECISE;SVTYPE=CNV;END=16958085;CN=4;SVLEN=4974557 GT ./. chr19 17000000 LOH:chr19:17000000-17350000 N . . IMPRECISE;SVTYPE=CNV;END=17350000;SVLEN=350000 GT ./. chr19 17385173 GAIN:chr19:17385173-24350000 N . . IMPRECISE;SVTYPE=CNV;END=24350000;CN=4;SVLEN=6964827 GT ./. chr19 24350000 GAIN:chr19:24350000-24448980 N . . IMPRECISE;SVTYPE=CNV;END=24448980;CN=5;SVLEN=98980 GT ./. chr19 24498980 GAIN:chr19:24498980-24552652 N . . IMPRECISE;SVTYPE=CNV;END=24552652;CN=5;SVLEN=53672 GT ./. chr19 24552752 GAIN:chr19:24552752-24850000 N . . IMPRECISE;SVTYPE=CNV;END=24850000;CN=5;SVLEN=297248 GT ./. chr19 24850000 GAIN:chr19:24850000-24891256 N . . IMPRECISE;SVTYPE=CNV;END=24891256;CN=4;SVLEN=41256 GT ./. chr19 24891356 GAIN:chr19:24891356-24895790 N . . IMPRECISE;SVTYPE=CNV;END=24895790;CN=4;SVLEN=4434 GT ./. chr19 24895890 GAIN:chr19:24895890-24898313 N . . IMPRECISE;SVTYPE=CNV;END=24898313;CN=4;SVLEN=2423 GT ./. chr19 24904771 GAIN:chr19:24904771-24908589 N . . IMPRECISE;SVTYPE=CNV;END=24908589;CN=4;SVLEN=3818 GT ./. chr19 24908689 GAIN:chr19:24908689-24950000 N . . IMPRECISE;SVTYPE=CNV;END=24950000;CN=4;SVLEN=41311 GT ./. chr19 27240874 GAIN:chr19:27240874-33850000 N . . IMPRECISE;SVTYPE=CNV;END=33850000;CN=5;SVLEN=6609126 GT ./. chr19 33850000 GAIN:chr19:33850000-38632283 N . . IMPRECISE;SVTYPE=CNV;END=38632283;CN=4;SVLEN=4782283 GT ./. chr19 38633322 LOH:chr19:38633322-49404256 N . . IMPRECISE;SVTYPE=CNV;END=49404256;SVLEN=10770934 GT ./. chr19 49404257 LOH:chr19:49404257-49404433 N . . IMPRECISE;SVTYPE=CNV;END=49404433;SVLEN=176 GT ./. chr19 49404433 GAINLOH:chr19:49404433-54550000 N , . . IMPRECISE;SVTYPE=CNV;END=54550000;CN=3;SVLEN=5145567 GT ./. chr19 54550000 GAINLOH:chr19:54550000-54650000 N , . . IMPRECISE;SVTYPE=CNV;END=54650000;CN=4;SVLEN=100000 GT ./. chr19 54650000 GAINLOH:chr19:54650000-55200000 N , . . IMPRECISE;SVTYPE=CNV;END=55200000;CN=3;SVLEN=550000 GT ./. chr19 55200000 GAINLOH:chr19:55200000-57150000 N , . . IMPRECISE;SVTYPE=CNV;END=57150000;CN=4;SVLEN=1950000 GT ./. chr19 57150000 GAINLOH:chr19:57150000-58586423 N , . . IMPRECISE;SVTYPE=CNV;END=58586423;CN=3;SVLEN=1436423 GT ./. chr19 58586423 GAIN:chr19:58586423-58606612 N . . IMPRECISE;SVTYPE=CNV;END=58606612;CN=3;SVLEN=20189 GT ./. chr2 10659 GAIN:chr2:10659-15265 N . . IMPRECISE;SVTYPE=CNV;END=15265;CN=3;SVLEN=4606 GT ./. chr2 15265 GAINLOH:chr2:15265-1550000 N , . . IMPRECISE;SVTYPE=CNV;END=1550000;CN=3;SVLEN=1534735 GT ./. chr2 1550000 GAIN:chr2:1550000-1600000 N . . IMPRECISE;SVTYPE=CNV;END=1600000;CN=3;SVLEN=50000 GT ./. chr2 1600000 GAINLOH:chr2:1600000-2850000 N , . . IMPRECISE;SVTYPE=CNV;END=2850000;CN=3;SVLEN=1250000 GT ./. chr2 2850000 GAIN:chr2:2850000-2900000 N . . IMPRECISE;SVTYPE=CNV;END=2900000;CN=3;SVLEN=50000 GT ./. chr2 2900000 GAINLOH:chr2:2900000-10164645 N , . . IMPRECISE;SVTYPE=CNV;END=10164645;CN=3;SVLEN=7264645 GT ./. chr2 10164645 LOH:chr2:10164645-10174149 N . . IMPRECISE;SVTYPE=CNV;END=10174149;SVLEN=9504 GT ./. chr2 10174408 LOSS:chr2:10174408-10195854 N . . IMPRECISE;SVTYPE=CNV;END=10195854;CN=1;SVLEN=21446 GT ./. chr2 10195854 LOH:chr2:10195854-16145119 N . . IMPRECISE;SVTYPE=CNV;END=16145119;SVLEN=5949265 GT ./. chr2 16146119 LOH:chr2:16146119-22100000 N . . IMPRECISE;SVTYPE=CNV;END=22100000;SVLEN=5953881 GT ./. chr2 22150000 LOH:chr2:22150000-25596186 N . . IMPRECISE;SVTYPE=CNV;END=25596186;SVLEN=3446186 GT ./. chr2 25596187 LOH:chr2:25596187-25596371 N . . IMPRECISE;SVTYPE=CNV;END=25596371;SVLEN=184 GT ./. chr2 25596668 LOH:chr2:25596668-25646763 N . . IMPRECISE;SVTYPE=CNV;END=25646763;SVLEN=50095 GT ./. chr2 25646763 GAINLOH:chr2:25646763-25650000 N , . . IMPRECISE;SVTYPE=CNV;END=25650000;CN=3;SVLEN=3237 GT ./. chr2 25650000 GAINLOH:chr2:25650000-25905905 N , . . IMPRECISE;SVTYPE=CNV;END=25905905;CN=4;SVLEN=255905 GT ./. chr2 25905905 GAINLOH:chr2:25905905-32004381 N , . . IMPRECISE;SVTYPE=CNV;END=32004381;CN=3;SVLEN=6098476 GT ./. chr2 32004381 LOH:chr2:32004381-32400000 N . . IMPRECISE;SVTYPE=CNV;END=32400000;SVLEN=395619 GT ./. chr2 32403520 GAIN:chr2:32403520-32952057 N . . IMPRECISE;SVTYPE=CNV;END=32952057;CN=4;SVLEN=548537 GT ./. chr2 32952057 GAINLOH:chr2:32952057-33106737 N , . . IMPRECISE;SVTYPE=CNV;END=33106737;CN=4;SVLEN=154680 GT ./. chr2 33106737 LOH:chr2:33106737-44944194 N . . IMPRECISE;SVTYPE=CNV;END=44944194;SVLEN=11837457 GT ./. chr2 44944194 GAINLOH:chr2:44944194-44944703 N , . . IMPRECISE;SVTYPE=CNV;END=44944703;CN=4;SVLEN=509 GT ./. chr2 44944703 GAIN:chr2:44944703-49590873 N . . IMPRECISE;SVTYPE=CNV;END=49590873;CN=4;SVLEN=4646170 GT ./. chr2 49590873 GAIN:chr2:49590873-49592376 N . . IMPRECISE;SVTYPE=CNV;END=49592376;CN=4;SVLEN=1503 GT ./. chr2 49592376 GAIN:chr2:49592376-49600000 N . . IMPRECISE;SVTYPE=CNV;END=49600000;CN=3;SVLEN=7624 GT ./. chr2 49600000 GAIN:chr2:49600000-49650000 N . . IMPRECISE;SVTYPE=CNV;END=49650000;CN=4;SVLEN=50000 GT ./. chr2 49650000 GAIN:chr2:49650000-50350000 N . . IMPRECISE;SVTYPE=CNV;END=50350000;CN=3;SVLEN=700000 GT ./. chr2 50350000 GAIN:chr2:50350000-50400000 N . . IMPRECISE;SVTYPE=CNV;END=50400000;CN=4;SVLEN=50000 GT ./. chr2 50400000 GAIN:chr2:50400000-51050000 N . . IMPRECISE;SVTYPE=CNV;END=51050000;CN=3;SVLEN=650000 GT ./. chr2 51050000 GAIN:chr2:51050000-51250000 N . . IMPRECISE;SVTYPE=CNV;END=51250000;CN=4;SVLEN=200000 GT ./. chr2 51250000 GAIN:chr2:51250000-51400000 N . . IMPRECISE;SVTYPE=CNV;END=51400000;CN=3;SVLEN=150000 GT ./. chr2 51400000 GAIN:chr2:51400000-51450000 N . . IMPRECISE;SVTYPE=CNV;END=51450000;CN=4;SVLEN=50000 GT ./. chr2 51450000 GAIN:chr2:51450000-51800000 N . . IMPRECISE;SVTYPE=CNV;END=51800000;CN=3;SVLEN=350000 GT ./. chr2 51800000 GAIN:chr2:51800000-51850000 N . . IMPRECISE;SVTYPE=CNV;END=51850000;CN=4;SVLEN=50000 GT ./. chr2 51850000 GAIN:chr2:51850000-51917130 N . . IMPRECISE;SVTYPE=CNV;END=51917130;CN=3;SVLEN=67130 GT ./. chr2 51917130 GAIN:chr2:51917130-52000000 N . . IMPRECISE;SVTYPE=CNV;END=52000000;CN=4;SVLEN=82870 GT ./. chr2 52000000 GAIN:chr2:52000000-52500000 N . . IMPRECISE;SVTYPE=CNV;END=52500000;CN=3;SVLEN=500000 GT ./. chr2 52500000 GAIN:chr2:52500000-52550000 N . . IMPRECISE;SVTYPE=CNV;END=52550000;CN=4;SVLEN=50000 GT ./. chr2 52550000 GAIN:chr2:52550000-52700000 N . . IMPRECISE;SVTYPE=CNV;END=52700000;CN=3;SVLEN=150000 GT ./. chr2 52700000 GAIN:chr2:52700000-52782966 N . . IMPRECISE;SVTYPE=CNV;END=52782966;CN=4;SVLEN=82966 GT ./. chr2 52782966 GAIN:chr2:52782966-52783069 N . . IMPRECISE;SVTYPE=CNV;END=52783069;CN=3;SVLEN=103 GT ./. chr2 52783069 GAIN:chr2:52783069-52850000 N . . IMPRECISE;SVTYPE=CNV;END=52850000;CN=4;SVLEN=66931 GT ./. chr2 52850000 GAIN:chr2:52850000-53000000 N . . IMPRECISE;SVTYPE=CNV;END=53000000;CN=3;SVLEN=150000 GT ./. chr2 53000000 GAIN:chr2:53000000-63599909 N . . IMPRECISE;SVTYPE=CNV;END=63599909;CN=4;SVLEN=10599909 GT ./. chr2 63600820 LOH:chr2:63600820-84531924 N . . IMPRECISE;SVTYPE=CNV;END=84531924;SVLEN=20931104 GT ./. chr2 84531924 GAINLOH:chr2:84531924-84543458 N , . . IMPRECISE;SVTYPE=CNV;END=84543458;CN=3;SVLEN=11534 GT ./. chr2 84543458 GAIN:chr2:84543458-84543459 N . . IMPRECISE;SVTYPE=CNV;END=84543459;CN=3;SVLEN=1 GT ./. chr2 84543459 GAINLOH:chr2:84543459-84543538 N , . . IMPRECISE;SVTYPE=CNV;END=84543538;CN=4;SVLEN=79 GT ./. chr2 84543538 GAIN:chr2:84543538-84881063 N . . IMPRECISE;SVTYPE=CNV;END=84881063;CN=4;SVLEN=337525 GT ./. chr2 84881063 GAIN:chr2:84881063-84900000 N . . IMPRECISE;SVTYPE=CNV;END=84900000;CN=5;SVLEN=18937 GT ./. chr2 84900000 GAIN:chr2:84900000-85132831 N . . IMPRECISE;SVTYPE=CNV;END=85132831;CN=6;SVLEN=232831 GT ./. chr2 85132831 GAIN:chr2:85132831-85150000 N . . IMPRECISE;SVTYPE=CNV;END=85150000;CN=5;SVLEN=17169 GT ./. chr2 85150000 GAIN:chr2:85150000-86200000 N . . IMPRECISE;SVTYPE=CNV;END=86200000;CN=4;SVLEN=1050000 GT ./. chr2 86200000 GAIN:chr2:86200000-86250000 N . . IMPRECISE;SVTYPE=CNV;END=86250000;CN=5;SVLEN=50000 GT ./. chr2 86250000 GAIN:chr2:86250000-86750000 N . . IMPRECISE;SVTYPE=CNV;END=86750000;CN=4;SVLEN=500000 GT ./. chr2 86750000 GAIN:chr2:86750000-86800000 N . . IMPRECISE;SVTYPE=CNV;END=86800000;CN=5;SVLEN=50000 GT ./. chr2 86800000 GAIN:chr2:86800000-86950000 N . . IMPRECISE;SVTYPE=CNV;END=86950000;CN=4;SVLEN=150000 GT ./. chr2 86950000 GAIN:chr2:86950000-87000000 N . . IMPRECISE;SVTYPE=CNV;END=87000000;CN=5;SVLEN=50000 GT ./. chr2 87000000 GAIN:chr2:87000000-88800000 N . . IMPRECISE;SVTYPE=CNV;END=88800000;CN=4;SVLEN=1800000 GT ./. chr2 88800000 GAIN:chr2:88800000-88850000 N . . IMPRECISE;SVTYPE=CNV;END=88850000;CN=5;SVLEN=50000 GT ./. chr2 88850000 GAIN:chr2:88850000-88880498 N . . IMPRECISE;SVTYPE=CNV;END=88880498;CN=7;SVLEN=30498 GT ./. chr2 88880498 GAIN:chr2:88880498-88900000 N . . IMPRECISE;SVTYPE=CNV;END=88900000;CN=8;SVLEN=19502 GT ./. chr2 88900000 GAIN:chr2:88900000-88950000 N . . IMPRECISE;SVTYPE=CNV;END=88950000;CN=10;SVLEN=50000 GT ./. chr2 88950000 GAIN:chr2:88950000-89000000 N . . IMPRECISE;SVTYPE=CNV;END=89000000;CN=8;SVLEN=50000 GT ./. chr2 89000000 GAIN:chr2:89000000-89012265 N . . IMPRECISE;SVTYPE=CNV;END=89012265;CN=11;SVLEN=12265 GT ./. chr2 89012265 GAIN:chr2:89012265-89031323 N . . IMPRECISE;SVTYPE=CNV;END=89031323;CN=12;SVLEN=19058 GT ./. chr2 89031323 GAIN:chr2:89031323-89052702 N . . IMPRECISE;SVTYPE=CNV;END=89052702;CN=11;SVLEN=21379 GT ./. chr2 89052702 GAIN:chr2:89052702-89055526 N . . IMPRECISE;SVTYPE=CNV;END=89055526;CN=10;SVLEN=2824 GT ./. chr2 89055526 GAIN:chr2:89055526-89208527 N . . IMPRECISE;SVTYPE=CNV;END=89208527;CN=11;SVLEN=153001 GT ./. chr2 89208527 GAIN:chr2:89208527-89210473 N . . IMPRECISE;SVTYPE=CNV;END=89210473;CN=10;SVLEN=1946 GT ./. chr2 89210473 GAIN:chr2:89210473-89250000 N . . IMPRECISE;SVTYPE=CNV;END=89250000;CN=11;SVLEN=39527 GT ./. chr2 89250000 GAIN:chr2:89250000-89300000 N . . IMPRECISE;SVTYPE=CNV;END=89300000;CN=5;SVLEN=50000 GT ./. chr2 89300000 GAIN:chr2:89300000-89330679 N . . IMPRECISE;SVTYPE=CNV;END=89330679;CN=4;SVLEN=30679 GT ./. chr2 89530679 GAIN:chr2:89530679-89685992 N . . IMPRECISE;SVTYPE=CNV;END=89685992;CN=5;SVLEN=155313 GT ./. chr2 89753992 GAIN:chr2:89753992-89851643 N . . IMPRECISE;SVTYPE=CNV;END=89851643;CN=5;SVLEN=97651 GT ./. chr2 89851643 GAIN:chr2:89851643-90400000 N . . IMPRECISE;SVTYPE=CNV;END=90400000;CN=4;SVLEN=548357 GT ./. chr2 91402511 GAIN:chr2:91402511-92138145 N . . IMPRECISE;SVTYPE=CNV;END=92138145;CN=4;SVLEN=735634 GT ./. chr2 92188145 GAIN:chr2:92188145-92400000 N . . IMPRECISE;SVTYPE=CNV;END=92400000;CN=4;SVLEN=211855 GT ./. chr2 92400000 GAIN:chr2:92400000-92450000 N . . IMPRECISE;SVTYPE=CNV;END=92450000;CN=5;SVLEN=50000 GT ./. chr2 92450000 GAIN:chr2:92450000-92500000 N . . IMPRECISE;SVTYPE=CNV;END=92500000;CN=4;SVLEN=50000 GT ./. chr2 92500000 GAIN:chr2:92500000-92600000 N . . IMPRECISE;SVTYPE=CNV;END=92600000;CN=5;SVLEN=100000 GT ./. chr2 92600000 GAIN:chr2:92600000-92850000 N . . IMPRECISE;SVTYPE=CNV;END=92850000;CN=4;SVLEN=250000 GT ./. chr2 92850000 GAIN:chr2:92850000-93000000 N . . IMPRECISE;SVTYPE=CNV;END=93000000;CN=5;SVLEN=150000 GT ./. chr2 93000000 GAIN:chr2:93000000-93200000 N . . IMPRECISE;SVTYPE=CNV;END=93200000;CN=4;SVLEN=200000 GT ./. chr2 93200000 GAIN:chr2:93200000-93300000 N . . IMPRECISE;SVTYPE=CNV;END=93300000;CN=5;SVLEN=100000 GT ./. chr2 93300000 GAIN:chr2:93300000-93400000 N . . IMPRECISE;SVTYPE=CNV;END=93400000;CN=4;SVLEN=100000 GT ./. chr2 93400000 GAIN:chr2:93400000-93450000 N . . IMPRECISE;SVTYPE=CNV;END=93450000;CN=5;SVLEN=50000 GT ./. chr2 93450000 GAIN:chr2:93450000-93550000 N . . IMPRECISE;SVTYPE=CNV;END=93550000;CN=4;SVLEN=100000 GT ./. chr2 93550000 GAIN:chr2:93550000-93600000 N . . IMPRECISE;SVTYPE=CNV;END=93600000;CN=5;SVLEN=50000 GT ./. chr2 93600000 GAIN:chr2:93600000-93700000 N . . IMPRECISE;SVTYPE=CNV;END=93700000;CN=4;SVLEN=100000 GT ./. chr2 93700000 GAIN:chr2:93700000-93750000 N . . IMPRECISE;SVTYPE=CNV;END=93750000;CN=5;SVLEN=50000 GT ./. chr2 93750000 GAIN:chr2:93750000-93850000 N . . IMPRECISE;SVTYPE=CNV;END=93850000;CN=4;SVLEN=100000 GT ./. chr2 93850000 GAIN:chr2:93850000-93950000 N . . IMPRECISE;SVTYPE=CNV;END=93950000;CN=5;SVLEN=100000 GT ./. chr2 93950000 GAIN:chr2:93950000-94090557 N . . IMPRECISE;SVTYPE=CNV;END=94090557;CN=4;SVLEN=140557 GT ./. chr2 94140557 GAIN:chr2:94140557-94293015 N . . IMPRECISE;SVTYPE=CNV;END=94293015;CN=5;SVLEN=152458 GT ./. chr2 94496015 GAIN:chr2:94496015-97439618 N . . IMPRECISE;SVTYPE=CNV;END=97439618;CN=4;SVLEN=2943603 GT ./. chr2 97489618 GAIN:chr2:97489618-102025358 N . . IMPRECISE;SVTYPE=CNV;END=102025358;CN=4;SVLEN=4535740 GT ./. chr2 102025358 GAIN:chr2:102025358-102055917 N . . IMPRECISE;SVTYPE=CNV;END=102055917;CN=3;SVLEN=30559 GT ./. chr2 102461711 LOSS:chr2:102461711-113662860 N . . IMPRECISE;SVTYPE=CNV;END=113662860;CN=1;SVLEN=11201149 GT ./. chr2 113662860 LOSS:chr2:113662860-114129906 N . . IMPRECISE;SVTYPE=CNV;END=114129906;CN=0.5;SVLEN=467046 GT ./. chr2 114129906 LOSS:chr2:114129906-114130136 N . . IMPRECISE;SVTYPE=CNV;END=114130136;CN=1;SVLEN=230 GT ./. chr2 114130136 LOSS:chr2:114130136-114130641 N . . IMPRECISE;SVTYPE=CNV;END=114130641;CN=0;SVLEN=505 GT ./. chr2 114130641 LOSS:chr2:114130641-114130665 N . . IMPRECISE;SVTYPE=CNV;END=114130665;CN=0.5;SVLEN=24 GT ./. chr2 114130665 LOSS:chr2:114130665-114131000 N . . IMPRECISE;SVTYPE=CNV;END=114131000;CN=1;SVLEN=335 GT ./. chr2 114131000 LOH:chr2:114131000-114249684 N . . IMPRECISE;SVTYPE=CNV;END=114249684;SVLEN=118684 GT ./. chr2 114249684 GAINLOH:chr2:114249684-133235418 N , . . IMPRECISE;SVTYPE=CNV;END=133235418;CN=3;SVLEN=18985734 GT ./. chr2 133235418 LOH:chr2:133235418-134850000 N . . IMPRECISE;SVTYPE=CNV;END=134850000;SVLEN=1614582 GT ./. chr2 134900000 LOH:chr2:134900000-135050000 N . . IMPRECISE;SVTYPE=CNV;END=135050000;SVLEN=150000 GT ./. chr2 135100000 LOH:chr2:135100000-135200000 N . . IMPRECISE;SVTYPE=CNV;END=135200000;SVLEN=100000 GT ./. chr2 135250000 LOH:chr2:135250000-135300000 N . . IMPRECISE;SVTYPE=CNV;END=135300000;SVLEN=50000 GT ./. chr2 135450000 LOH:chr2:135450000-135500000 N . . IMPRECISE;SVTYPE=CNV;END=135500000;SVLEN=50000 GT ./. chr2 135650000 LOH:chr2:135650000-135750000 N . . IMPRECISE;SVTYPE=CNV;END=135750000;SVLEN=100000 GT ./. chr2 135900000 LOH:chr2:135900000-135950000 N . . IMPRECISE;SVTYPE=CNV;END=135950000;SVLEN=50000 GT ./. chr2 136050000 LOH:chr2:136050000-138346905 N . . IMPRECISE;SVTYPE=CNV;END=138346905;SVLEN=2296905 GT ./. chr2 138346905 GAINLOH:chr2:138346905-144000000 N , . . IMPRECISE;SVTYPE=CNV;END=144000000;CN=3;SVLEN=5653095 GT ./. chr2 144000000 GAIN:chr2:144000000-144050000 N . . IMPRECISE;SVTYPE=CNV;END=144050000;CN=3;SVLEN=50000 GT ./. chr2 144050000 GAINLOH:chr2:144050000-159970357 N , . . IMPRECISE;SVTYPE=CNV;END=159970357;CN=3;SVLEN=15920357 GT ./. chr2 159970357 GAIN:chr2:159970357-159970358 N . . IMPRECISE;SVTYPE=CNV;END=159970358;CN=3;SVLEN=1 GT ./. chr2 159970358 GAINLOH:chr2:159970358-159970473 N , . . IMPRECISE;SVTYPE=CNV;END=159970473;CN=3;SVLEN=115 GT ./. chr2 159970473 GAIN:chr2:159970473-159970868 N . . IMPRECISE;SVTYPE=CNV;END=159970868;CN=4;SVLEN=395 GT ./. chr2 159970868 GAINLOH:chr2:159970868-159970963 N , . . IMPRECISE;SVTYPE=CNV;END=159970963;CN=4;SVLEN=95 GT ./. chr2 159970963 GAIN:chr2:159970963-160000000 N . . IMPRECISE;SVTYPE=CNV;END=160000000;CN=4;SVLEN=29037 GT ./. chr2 160000000 GAINLOH:chr2:160000000-160100000 N , . . IMPRECISE;SVTYPE=CNV;END=160100000;CN=4;SVLEN=100000 GT ./. chr2 160100000 GAIN:chr2:160100000-160150000 N . . IMPRECISE;SVTYPE=CNV;END=160150000;CN=4;SVLEN=50000 GT ./. chr2 160150000 GAINLOH:chr2:160150000-160303190 N , . . IMPRECISE;SVTYPE=CNV;END=160303190;CN=4;SVLEN=153190 GT ./. chr2 160303190 GAIN:chr2:160303190-160303191 N . . IMPRECISE;SVTYPE=CNV;END=160303191;CN=3;SVLEN=1 GT ./. chr2 160303191 GAINLOH:chr2:160303191-161365933 N , . . IMPRECISE;SVTYPE=CNV;END=161365933;CN=3;SVLEN=1062742 GT ./. chr2 161365933 GAIN:chr2:161365933-161400000 N . . IMPRECISE;SVTYPE=CNV;END=161400000;CN=3;SVLEN=34067 GT ./. chr2 161400000 GAINLOH:chr2:161400000-161450000 N , . . IMPRECISE;SVTYPE=CNV;END=161450000;CN=3;SVLEN=50000 GT ./. chr2 161450000 GAIN:chr2:161450000-161600000 N . . IMPRECISE;SVTYPE=CNV;END=161600000;CN=3;SVLEN=150000 GT ./. chr2 161600000 GAINLOH:chr2:161600000-161700000 N , . . IMPRECISE;SVTYPE=CNV;END=161700000;CN=3;SVLEN=100000 GT ./. chr2 161700000 GAIN:chr2:161700000-161750000 N . . IMPRECISE;SVTYPE=CNV;END=161750000;CN=3;SVLEN=50000 GT ./. chr2 161750000 GAINLOH:chr2:161750000-161850000 N , . . IMPRECISE;SVTYPE=CNV;END=161850000;CN=3;SVLEN=100000 GT ./. chr2 161850000 GAIN:chr2:161850000-161950000 N . . IMPRECISE;SVTYPE=CNV;END=161950000;CN=3;SVLEN=100000 GT ./. chr2 161950000 GAINLOH:chr2:161950000-162000000 N , . . IMPRECISE;SVTYPE=CNV;END=162000000;CN=3;SVLEN=50000 GT ./. chr2 162000000 GAIN:chr2:162000000-162100000 N . . IMPRECISE;SVTYPE=CNV;END=162100000;CN=3;SVLEN=100000 GT ./. chr2 162100000 GAINLOH:chr2:162100000-162400000 N , . . IMPRECISE;SVTYPE=CNV;END=162400000;CN=3;SVLEN=300000 GT ./. chr2 162400000 GAIN:chr2:162400000-162411971 N . . IMPRECISE;SVTYPE=CNV;END=162411971;CN=3;SVLEN=11971 GT ./. chr2 162411971 GAIN:chr2:162411971-163704798 N . . IMPRECISE;SVTYPE=CNV;END=163704798;CN=4;SVLEN=1292827 GT ./. chr2 163704798 GAIN:chr2:163704798-163732179 N . . IMPRECISE;SVTYPE=CNV;END=163732179;CN=5;SVLEN=27381 GT ./. chr2 163732179 GAIN:chr2:163732179-191794754 N . . IMPRECISE;SVTYPE=CNV;END=191794754;CN=4;SVLEN=28062575 GT ./. chr2 191800000 LOSS:chr2:191800000-192450000 N . . IMPRECISE;SVTYPE=CNV;END=192450000;CN=1;SVLEN=650000 GT ./. chr2 192850000 LOSS:chr2:192850000-193250000 N . . IMPRECISE;SVTYPE=CNV;END=193250000;CN=1;SVLEN=400000 GT ./. chr2 193300000 LOSS:chr2:193300000-194200000 N . . IMPRECISE;SVTYPE=CNV;END=194200000;CN=1;SVLEN=900000 GT ./. chr2 194300000 LOSS:chr2:194300000-196835927 N . . IMPRECISE;SVTYPE=CNV;END=196835927;CN=1;SVLEN=2535927 GT ./. chr2 222700000 GAIN:chr2:222700000-222734165 N . . IMPRECISE;SVTYPE=CNV;END=222734165;CN=3;SVLEN=34165 GT ./. chr2 222734165 GAIN:chr2:222734165-222874718 N . . IMPRECISE;SVTYPE=CNV;END=222874718;CN=4;SVLEN=140553 GT ./. chr2 222874718 GAIN:chr2:222874718-223085575 N . . IMPRECISE;SVTYPE=CNV;END=223085575;CN=3;SVLEN=210857 GT ./. chr2 225200000 GAIN:chr2:225200000-225247823 N . . IMPRECISE;SVTYPE=CNV;END=225247823;CN=3;SVLEN=47823 GT ./. chr2 225247823 GAIN:chr2:225247823-233868394 N . . IMPRECISE;SVTYPE=CNV;END=233868394;CN=4;SVLEN=8620571 GT ./. chr2 233868394 GAIN:chr2:233868394-233868562 N . . IMPRECISE;SVTYPE=CNV;END=233868562;CN=3;SVLEN=168 GT ./. chr2 233868562 GAIN:chr2:233868562-233874874 N . . IMPRECISE;SVTYPE=CNV;END=233874874;CN=4;SVLEN=6312 GT ./. chr2 233874874 GAIN:chr2:233874874-233875200 N . . IMPRECISE;SVTYPE=CNV;END=233875200;CN=3;SVLEN=326 GT ./. chr2 233875200 GAIN:chr2:233875200-234100000 N . . IMPRECISE;SVTYPE=CNV;END=234100000;CN=4;SVLEN=224800 GT ./. chr2 234100000 GAIN:chr2:234100000-234150000 N . . IMPRECISE;SVTYPE=CNV;END=234150000;CN=5;SVLEN=50000 GT ./. chr2 234150000 GAIN:chr2:234150000-237033716 N . . IMPRECISE;SVTYPE=CNV;END=237033716;CN=4;SVLEN=2883716 GT ./. chr2 237033716 GAIN:chr2:237033716-237033889 N . . IMPRECISE;SVTYPE=CNV;END=237033889;CN=3;SVLEN=173 GT ./. chr2 237033889 GAIN:chr2:237033889-237071212 N . . IMPRECISE;SVTYPE=CNV;END=237071212;CN=4;SVLEN=37323 GT ./. chr2 237071212 GAIN:chr2:237071212-237071706 N . . IMPRECISE;SVTYPE=CNV;END=237071706;CN=3;SVLEN=494 GT ./. chr2 237071706 GAIN:chr2:237071706-237086605 N . . IMPRECISE;SVTYPE=CNV;END=237086605;CN=4;SVLEN=14899 GT ./. chr2 237086605 GAIN:chr2:237086605-237086944 N . . IMPRECISE;SVTYPE=CNV;END=237086944;CN=3;SVLEN=339 GT ./. chr2 237086944 GAIN:chr2:237086944-237200000 N . . IMPRECISE;SVTYPE=CNV;END=237200000;CN=4;SVLEN=113056 GT ./. chr2 237200000 GAIN:chr2:237200000-237205098 N . . IMPRECISE;SVTYPE=CNV;END=237205098;CN=3;SVLEN=5098 GT ./. chr2 237205098 GAIN:chr2:237205098-237300000 N . . IMPRECISE;SVTYPE=CNV;END=237300000;CN=4;SVLEN=94902 GT ./. chr2 237300000 GAIN:chr2:237300000-238903659 N . . IMPRECISE;SVTYPE=CNV;END=238903659;CN=3;SVLEN=1603659 GT ./. chr2 238904047 GAIN:chr2:238904047-242107555 N . . IMPRECISE;SVTYPE=CNV;END=242107555;CN=3;SVLEN=3203508 GT ./. chr20 79838 GAIN:chr20:79838-13600000 N . . IMPRECISE;SVTYPE=CNV;END=13600000;CN=3;SVLEN=13520162 GT ./. chr20 13600000 GAIN:chr20:13600000-14550000 N . . IMPRECISE;SVTYPE=CNV;END=14550000;CN=4;SVLEN=950000 GT ./. chr20 14550000 GAIN:chr20:14550000-26313349 N . . IMPRECISE;SVTYPE=CNV;END=26313349;CN=3;SVLEN=11763349 GT ./. chr20 29300000 GAIN:chr20:29300000-29307456 N . . IMPRECISE;SVTYPE=CNV;END=29307456;CN=3;SVLEN=7456 GT ./. chr20 29307476 GAIN:chr20:29307476-29315342 N . . IMPRECISE;SVTYPE=CNV;END=29315342;CN=3;SVLEN=7866 GT ./. chr20 29315821 GAIN:chr20:29315821-29362154 N . . IMPRECISE;SVTYPE=CNV;END=29362154;CN=3;SVLEN=46333 GT ./. chr20 29362183 GAIN:chr20:29362183-29412507 N . . IMPRECISE;SVTYPE=CNV;END=29412507;CN=3;SVLEN=50324 GT ./. chr20 29413577 GAIN:chr20:29413577-29447838 N . . IMPRECISE;SVTYPE=CNV;END=29447838;CN=3;SVLEN=34261 GT ./. chr20 29447883 GAIN:chr20:29447883-29452158 N . . IMPRECISE;SVTYPE=CNV;END=29452158;CN=3;SVLEN=4275 GT ./. chr20 29452178 GAIN:chr20:29452178-29538733 N . . IMPRECISE;SVTYPE=CNV;END=29538733;CN=3;SVLEN=86555 GT ./. chr20 29538783 GAIN:chr20:29538783-29540234 N . . IMPRECISE;SVTYPE=CNV;END=29540234;CN=3;SVLEN=1451 GT ./. chr20 29540284 GAIN:chr20:29540284-29556103 N . . IMPRECISE;SVTYPE=CNV;END=29556103;CN=3;SVLEN=15819 GT ./. chr20 29556141 GAIN:chr20:29556141-29562970 N . . IMPRECISE;SVTYPE=CNV;END=29562970;CN=3;SVLEN=6829 GT ./. chr20 29563363 GAIN:chr20:29563363-29564411 N . . IMPRECISE;SVTYPE=CNV;END=29564411;CN=3;SVLEN=1048 GT ./. chr20 29565353 GAIN:chr20:29565353-29592644 N . . IMPRECISE;SVTYPE=CNV;END=29592644;CN=3;SVLEN=27291 GT ./. chr20 29592737 GAIN:chr20:29592737-29651590 N . . IMPRECISE;SVTYPE=CNV;END=29651590;CN=3;SVLEN=58853 GT ./. chr20 29651610 GAIN:chr20:29651610-29697363 N . . IMPRECISE;SVTYPE=CNV;END=29697363;CN=3;SVLEN=45753 GT ./. chr20 29697630 GAIN:chr20:29697630-29884750 N . . IMPRECISE;SVTYPE=CNV;END=29884750;CN=3;SVLEN=187120 GT ./. chr20 29884850 GAIN:chr20:29884850-29917304 N . . IMPRECISE;SVTYPE=CNV;END=29917304;CN=3;SVLEN=32454 GT ./. chr20 29917404 GAIN:chr20:29917404-30038348 N . . IMPRECISE;SVTYPE=CNV;END=30038348;CN=3;SVLEN=120944 GT ./. chr20 30088348 GAIN:chr20:30088348-30425128 N . . IMPRECISE;SVTYPE=CNV;END=30425128;CN=3;SVLEN=336780 GT ./. chr20 30456077 GAIN:chr20:30456077-30761898 N . . IMPRECISE;SVTYPE=CNV;END=30761898;CN=3;SVLEN=305821 GT ./. chr20 30811898 GAIN:chr20:30811898-31001508 N . . IMPRECISE;SVTYPE=CNV;END=31001508;CN=3;SVLEN=189610 GT ./. chr20 31051508 GAIN:chr20:31051508-31107036 N . . IMPRECISE;SVTYPE=CNV;END=31107036;CN=3;SVLEN=55528 GT ./. chr20 31157036 GAIN:chr20:31157036-31159119 N . . IMPRECISE;SVTYPE=CNV;END=31159119;CN=3;SVLEN=2083 GT ./. chr20 31161625 GAIN:chr20:31161625-33950000 N . . IMPRECISE;SVTYPE=CNV;END=33950000;CN=3;SVLEN=2788375 GT ./. chr20 33950000 GAIN:chr20:33950000-34250000 N . . IMPRECISE;SVTYPE=CNV;END=34250000;CN=4;SVLEN=300000 GT ./. chr20 34250000 GAIN:chr20:34250000-34300000 N . . IMPRECISE;SVTYPE=CNV;END=34300000;CN=5;SVLEN=50000 GT ./. chr20 34300000 GAIN:chr20:34300000-36050000 N . . IMPRECISE;SVTYPE=CNV;END=36050000;CN=4;SVLEN=1750000 GT ./. chr20 36050000 GAIN:chr20:36050000-36100000 N . . IMPRECISE;SVTYPE=CNV;END=36100000;CN=5;SVLEN=50000 GT ./. chr20 36100000 GAIN:chr20:36100000-36200000 N . . IMPRECISE;SVTYPE=CNV;END=36200000;CN=4;SVLEN=100000 GT ./. chr20 36200000 GAIN:chr20:36200000-36250000 N . . IMPRECISE;SVTYPE=CNV;END=36250000;CN=5;SVLEN=50000 GT ./. chr20 36250000 GAIN:chr20:36250000-38800000 N . . IMPRECISE;SVTYPE=CNV;END=38800000;CN=4;SVLEN=2550000 GT ./. chr20 38800000 GAIN:chr20:38800000-39450000 N . . IMPRECISE;SVTYPE=CNV;END=39450000;CN=5;SVLEN=650000 GT ./. chr20 39450000 GAIN:chr20:39450000-64333095 N . . IMPRECISE;SVTYPE=CNV;END=64333095;CN=4;SVLEN=24883095 GT ./. chr21 8522577 GAIN:chr21:8522577-8600000 N . . IMPRECISE;SVTYPE=CNV;END=8600000;CN=4;SVLEN=77423 GT ./. chr21 8600000 GAIN:chr21:8600000-8706715 N . . IMPRECISE;SVTYPE=CNV;END=8706715;CN=4;SVLEN=106715 GT ./. chr21 9350000 GAIN:chr21:9350000-9377143 N . . IMPRECISE;SVTYPE=CNV;END=9377143;CN=3;SVLEN=27143 GT ./. chr21 9720429 GAIN:chr21:9720429-9796966 N . . IMPRECISE;SVTYPE=CNV;END=9796966;CN=3;SVLEN=76537 GT ./. chr21 9850000 GAIN:chr21:9850000-9893416 N . . IMPRECISE;SVTYPE=CNV;END=9893416;CN=3;SVLEN=43416 GT ./. chr21 36949289 LOSS:chr21:36949289-38900000 N . . IMPRECISE;SVTYPE=CNV;END=38900000;CN=1;SVLEN=1950711 GT ./. chr21 43000000 GAIN:chr21:43000000-43032757 N . . IMPRECISE;SVTYPE=CNV;END=43032757;CN=3;SVLEN=32757 GT ./. chr21 45710803 GAIN:chr21:45710803-46692721 N . . IMPRECISE;SVTYPE=CNV;END=46692721;CN=3;SVLEN=981918 GT ./. chr22 10834643 GAIN:chr22:10834643-10874572 N . . IMPRECISE;SVTYPE=CNV;END=10874572;CN=6;SVLEN=39929 GT ./. chr22 11212035 GAIN:chr22:11212035-11250000 N . . IMPRECISE;SVTYPE=CNV;END=11250000;CN=5;SVLEN=37965 GT ./. chr22 12406546 GAIN:chr22:12406546-12438690 N . . IMPRECISE;SVTYPE=CNV;END=12438690;CN=6;SVLEN=32144 GT ./. chr22 12600000 GAIN:chr22:12600000-12641730 N . . IMPRECISE;SVTYPE=CNV;END=12641730;CN=7;SVLEN=41730 GT ./. chr22 12691730 GAIN:chr22:12691730-12707136 N . . IMPRECISE;SVTYPE=CNV;END=12707136;CN=7;SVLEN=15406 GT ./. chr22 15528005 GAIN:chr22:15528005-15550000 N . . IMPRECISE;SVTYPE=CNV;END=15550000;CN=5;SVLEN=21995 GT ./. chr22 15650000 GAIN:chr22:15650000-15750000 N . . IMPRECISE;SVTYPE=CNV;END=15750000;CN=5;SVLEN=100000 GT ./. chr22 15750000 GAIN:chr22:15750000-15800000 N . . IMPRECISE;SVTYPE=CNV;END=15800000;CN=5;SVLEN=50000 GT ./. chr22 15800000 GAIN:chr22:15800000-15850000 N . . IMPRECISE;SVTYPE=CNV;END=15850000;CN=4;SVLEN=50000 GT ./. chr22 15850000 GAIN:chr22:15850000-15891472 N . . IMPRECISE;SVTYPE=CNV;END=15891472;CN=5;SVLEN=41472 GT ./. chr22 16374376 LOH:chr22:16374376-18239129 N . . IMPRECISE;SVTYPE=CNV;END=18239129;SVLEN=1864753 GT ./. chr22 18339129 LOH:chr22:18339129-18433513 N . . IMPRECISE;SVTYPE=CNV;END=18433513;SVLEN=94384 GT ./. chr22 18483513 LOH:chr22:18483513-18659564 N . . IMPRECISE;SVTYPE=CNV;END=18659564;SVLEN=176051 GT ./. chr22 18709564 LOH:chr22:18709564-20400000 N . . IMPRECISE;SVTYPE=CNV;END=20400000;SVLEN=1690436 GT ./. chr22 20400000 GAINLOH:chr22:20400000-20596106 N , . . IMPRECISE;SVTYPE=CNV;END=20596106;CN=3;SVLEN=196106 GT ./. chr22 20596106 LOH:chr22:20596106-22006898 N . . IMPRECISE;SVTYPE=CNV;END=22006898;SVLEN=1410792 GT ./. chr22 22006898 GAINLOH:chr22:22006898-22303192 N , . . IMPRECISE;SVTYPE=CNV;END=22303192;CN=3;SVLEN=296294 GT ./. chr22 22303192 LOH:chr22:22303192-22303535 N . . IMPRECISE;SVTYPE=CNV;END=22303535;SVLEN=343 GT ./. chr22 22303535 GAINLOH:chr22:22303535-22550000 N , . . IMPRECISE;SVTYPE=CNV;END=22550000;CN=3;SVLEN=246465 GT ./. chr22 22550000 LOH:chr22:22550000-22650000 N . . IMPRECISE;SVTYPE=CNV;END=22650000;SVLEN=100000 GT ./. chr22 22650000 GAINLOH:chr22:22650000-22683357 N , . . IMPRECISE;SVTYPE=CNV;END=22683357;CN=4;SVLEN=33357 GT ./. chr22 22683357 GAIN:chr22:22683357-22700000 N . . IMPRECISE;SVTYPE=CNV;END=22700000;CN=4;SVLEN=16643 GT ./. chr22 22700000 GAIN:chr22:22700000-22800000 N . . IMPRECISE;SVTYPE=CNV;END=22800000;CN=5;SVLEN=100000 GT ./. chr22 22800000 GAIN:chr22:22800000-22900000 N . . IMPRECISE;SVTYPE=CNV;END=22900000;CN=7;SVLEN=100000 GT ./. chr22 22900000 GAIN:chr22:22900000-23150000 N . . IMPRECISE;SVTYPE=CNV;END=23150000;CN=5;SVLEN=250000 GT ./. chr22 23150000 GAIN:chr22:23150000-24100000 N . . IMPRECISE;SVTYPE=CNV;END=24100000;CN=6;SVLEN=950000 GT ./. chr22 24100000 GAIN:chr22:24100000-24150000 N . . IMPRECISE;SVTYPE=CNV;END=24150000;CN=5;SVLEN=50000 GT ./. chr22 24150000 GAIN:chr22:24150000-25500000 N . . IMPRECISE;SVTYPE=CNV;END=25500000;CN=6;SVLEN=1350000 GT ./. chr22 25500000 GAIN:chr22:25500000-25550000 N . . IMPRECISE;SVTYPE=CNV;END=25550000;CN=5;SVLEN=50000 GT ./. chr22 25550000 GAIN:chr22:25550000-28200000 N . . IMPRECISE;SVTYPE=CNV;END=28200000;CN=6;SVLEN=2650000 GT ./. chr22 28200000 GAIN:chr22:28200000-36091499 N . . IMPRECISE;SVTYPE=CNV;END=36091499;CN=5;SVLEN=7891499 GT ./. chr22 36100000 LOH:chr22:36100000-36400000 N . . IMPRECISE;SVTYPE=CNV;END=36400000;SVLEN=300000 GT ./. chr22 36419011 GAIN:chr22:36419011-36450000 N . . IMPRECISE;SVTYPE=CNV;END=36450000;CN=5;SVLEN=30989 GT ./. chr22 36450000 GAIN:chr22:36450000-37700000 N . . IMPRECISE;SVTYPE=CNV;END=37700000;CN=6;SVLEN=1250000 GT ./. chr22 37700000 GAINLOH:chr22:37700000-38050000 N , . . IMPRECISE;SVTYPE=CNV;END=38050000;CN=4;SVLEN=350000 GT ./. chr22 38050000 GAIN:chr22:38050000-38100000 N . . IMPRECISE;SVTYPE=CNV;END=38100000;CN=4;SVLEN=50000 GT ./. chr22 38100000 GAINLOH:chr22:38100000-38200000 N , . . IMPRECISE;SVTYPE=CNV;END=38200000;CN=4;SVLEN=100000 GT ./. chr22 38200000 GAINLOH:chr22:38200000-39350000 N , . . IMPRECISE;SVTYPE=CNV;END=39350000;CN=6;SVLEN=1150000 GT ./. chr22 39350000 GAINLOH:chr22:39350000-41300000 N , . . IMPRECISE;SVTYPE=CNV;END=41300000;CN=4;SVLEN=1950000 GT ./. chr22 41300000 GAIN:chr22:41300000-41350000 N . . IMPRECISE;SVTYPE=CNV;END=41350000;CN=4;SVLEN=50000 GT ./. chr22 41350000 GAINLOH:chr22:41350000-43100000 N , . . IMPRECISE;SVTYPE=CNV;END=43100000;CN=4;SVLEN=1750000 GT ./. chr22 43100000 GAINLOH:chr22:43100000-45750000 N , . . IMPRECISE;SVTYPE=CNV;END=45750000;CN=6;SVLEN=2650000 GT ./. chr22 45750000 GAIN:chr22:45750000-45800000 N . . IMPRECISE;SVTYPE=CNV;END=45800000;CN=4;SVLEN=50000 GT ./. chr22 45800000 GAINLOH:chr22:45800000-46400000 N , . . IMPRECISE;SVTYPE=CNV;END=46400000;CN=4;SVLEN=600000 GT ./. chr22 46400000 GAINLOH:chr22:46400000-47093319 N , . . IMPRECISE;SVTYPE=CNV;END=47093319;CN=5;SVLEN=693319 GT ./. chr22 47093319 GAIN:chr22:47093319-47093320 N . . IMPRECISE;SVTYPE=CNV;END=47093320;CN=5;SVLEN=1 GT ./. chr22 47093320 GAINLOH:chr22:47093320-49973865 N , . . IMPRECISE;SVTYPE=CNV;END=49973865;CN=5;SVLEN=2880545 GT ./. chr22 49975365 GAINLOH:chr22:49975365-50669336 N , . . IMPRECISE;SVTYPE=CNV;END=50669336;CN=5;SVLEN=693971 GT ./. chr22 50669336 GAIN:chr22:50669336-50750000 N . . IMPRECISE;SVTYPE=CNV;END=50750000;CN=5;SVLEN=80664 GT ./. chr22 50750000 GAINLOH:chr22:50750000-50750125 N , . . IMPRECISE;SVTYPE=CNV;END=50750125;CN=5;SVLEN=125 GT ./. chr22 50750125 GAIN:chr22:50750125-50802958 N . . IMPRECISE;SVTYPE=CNV;END=50802958;CN=5;SVLEN=52833 GT ./. chr3 18519 GAIN:chr3:18519-50000 N . . IMPRECISE;SVTYPE=CNV;END=50000;CN=3;SVLEN=31481 GT ./. chr3 50000 GAINLOH:chr3:50000-38050000 N , . . IMPRECISE;SVTYPE=CNV;END=38050000;CN=3;SVLEN=38000000 GT ./. chr3 38050000 GAIN:chr3:38050000-38100000 N . . IMPRECISE;SVTYPE=CNV;END=38100000;CN=3;SVLEN=50000 GT ./. chr3 38100000 GAINLOH:chr3:38100000-48050000 N , . . IMPRECISE;SVTYPE=CNV;END=48050000;CN=3;SVLEN=9950000 GT ./. chr3 48050000 GAIN:chr3:48050000-48052990 N . . IMPRECISE;SVTYPE=CNV;END=48052990;CN=3;SVLEN=2990 GT ./. chr3 48052990 GAINLOH:chr3:48052990-48750000 N , . . IMPRECISE;SVTYPE=CNV;END=48750000;CN=3;SVLEN=697010 GT ./. chr3 48750000 GAIN:chr3:48750000-48800000 N . . IMPRECISE;SVTYPE=CNV;END=48800000;CN=3;SVLEN=50000 GT ./. chr3 48800000 GAINLOH:chr3:48800000-49050000 N , . . IMPRECISE;SVTYPE=CNV;END=49050000;CN=3;SVLEN=250000 GT ./. chr3 49050000 GAIN:chr3:49050000-49100000 N . . IMPRECISE;SVTYPE=CNV;END=49100000;CN=3;SVLEN=50000 GT ./. chr3 49100000 GAINLOH:chr3:49100000-49250000 N , . . IMPRECISE;SVTYPE=CNV;END=49250000;CN=3;SVLEN=150000 GT ./. chr3 49250000 GAIN:chr3:49250000-49300000 N . . IMPRECISE;SVTYPE=CNV;END=49300000;CN=3;SVLEN=50000 GT ./. chr3 49300000 GAINLOH:chr3:49300000-49400000 N , . . IMPRECISE;SVTYPE=CNV;END=49400000;CN=3;SVLEN=100000 GT ./. chr3 49400000 GAIN:chr3:49400000-49450000 N . . IMPRECISE;SVTYPE=CNV;END=49450000;CN=3;SVLEN=50000 GT ./. chr3 49450000 GAINLOH:chr3:49450000-49600000 N , . . IMPRECISE;SVTYPE=CNV;END=49600000;CN=3;SVLEN=150000 GT ./. chr3 49600000 GAIN:chr3:49600000-49650000 N . . IMPRECISE;SVTYPE=CNV;END=49650000;CN=3;SVLEN=50000 GT ./. chr3 49650000 GAINLOH:chr3:49650000-49700000 N , . . IMPRECISE;SVTYPE=CNV;END=49700000;CN=3;SVLEN=50000 GT ./. chr3 49700000 GAIN:chr3:49700000-49750000 N . . IMPRECISE;SVTYPE=CNV;END=49750000;CN=3;SVLEN=50000 GT ./. chr3 49750000 GAINLOH:chr3:49750000-49800000 N , . . IMPRECISE;SVTYPE=CNV;END=49800000;CN=3;SVLEN=50000 GT ./. chr3 49800000 GAIN:chr3:49800000-49850000 N . . IMPRECISE;SVTYPE=CNV;END=49850000;CN=3;SVLEN=50000 GT ./. chr3 49850000 GAINLOH:chr3:49850000-57824204 N , . . IMPRECISE;SVTYPE=CNV;END=57824204;CN=3;SVLEN=7974204 GT ./. chr3 57824204 LOH:chr3:57824204-62760548 N . . IMPRECISE;SVTYPE=CNV;END=62760548;SVLEN=4936344 GT ./. chr3 62765298 GAIN:chr3:62765298-62800000 N . . IMPRECISE;SVTYPE=CNV;END=62800000;CN=5;SVLEN=34702 GT ./. chr3 62800000 GAIN:chr3:62800000-62938529 N . . IMPRECISE;SVTYPE=CNV;END=62938529;CN=4;SVLEN=138529 GT ./. chr3 63155887 LOH:chr3:63155887-63300000 N . . IMPRECISE;SVTYPE=CNV;END=63300000;SVLEN=144113 GT ./. chr3 63312511 GAIN:chr3:63312511-63431990 N . . IMPRECISE;SVTYPE=CNV;END=63431990;CN=4;SVLEN=119479 GT ./. chr3 63434850 LOH:chr3:63434850-70850000 N . . IMPRECISE;SVTYPE=CNV;END=70850000;SVLEN=7415150 GT ./. chr3 71350000 LOH:chr3:71350000-72750000 N . . IMPRECISE;SVTYPE=CNV;END=72750000;SVLEN=1400000 GT ./. chr3 72772336 GAIN:chr3:72772336-73235759 N . . IMPRECISE;SVTYPE=CNV;END=73235759;CN=4;SVLEN=463423 GT ./. chr3 73235759 GAINLOH:chr3:73235759-73236025 N , . . IMPRECISE;SVTYPE=CNV;END=73236025;CN=4;SVLEN=266 GT ./. chr3 73236025 LOH:chr3:73236025-73689958 N . . IMPRECISE;SVTYPE=CNV;END=73689958;SVLEN=453933 GT ./. chr3 73691222 GAIN:chr3:73691222-75519281 N . . IMPRECISE;SVTYPE=CNV;END=75519281;CN=4;SVLEN=1828059 GT ./. chr3 75519281 GAIN:chr3:75519281-75585574 N . . IMPRECISE;SVTYPE=CNV;END=75585574;CN=5;SVLEN=66293 GT ./. chr3 75600000 LOH:chr3:75600000-75650000 N . . IMPRECISE;SVTYPE=CNV;END=75650000;SVLEN=50000 GT ./. chr3 75662123 GAIN:chr3:75662123-75693820 N . . IMPRECISE;SVTYPE=CNV;END=75693820;CN=3;SVLEN=31697 GT ./. chr3 75706792 LOH:chr3:75706792-78093408 N . . IMPRECISE;SVTYPE=CNV;END=78093408;SVLEN=2386616 GT ./. chr3 78112354 GAIN:chr3:78112354-78656717 N . . IMPRECISE;SVTYPE=CNV;END=78656717;CN=4;SVLEN=544363 GT ./. chr3 78658596 LOH:chr3:78658596-78800000 N . . IMPRECISE;SVTYPE=CNV;END=78800000;SVLEN=141404 GT ./. chr3 78818432 GAIN:chr3:78818432-78916697 N . . IMPRECISE;SVTYPE=CNV;END=78916697;CN=4;SVLEN=98265 GT ./. chr3 78916697 GAIN:chr3:78916697-78918579 N . . IMPRECISE;SVTYPE=CNV;END=78918579;CN=5;SVLEN=1882 GT ./. chr3 78918579 GAIN:chr3:78918579-78941366 N . . IMPRECISE;SVTYPE=CNV;END=78941366;CN=4;SVLEN=22787 GT ./. chr3 78941366 GAIN:chr3:78941366-78941835 N . . IMPRECISE;SVTYPE=CNV;END=78941835;CN=5;SVLEN=469 GT ./. chr3 78950000 LOH:chr3:78950000-79885223 N . . IMPRECISE;SVTYPE=CNV;END=79885223;SVLEN=935223 GT ./. chr3 79950000 LOH:chr3:79950000-80150000 N . . IMPRECISE;SVTYPE=CNV;END=80150000;SVLEN=200000 GT ./. chr3 80244785 LOH:chr3:80244785-81962948 N . . IMPRECISE;SVTYPE=CNV;END=81962948;SVLEN=1718163 GT ./. chr3 82134037 LOH:chr3:82134037-82438185 N . . IMPRECISE;SVTYPE=CNV;END=82438185;SVLEN=304148 GT ./. chr3 82438917 GAIN:chr3:82438917-82539136 N . . IMPRECISE;SVTYPE=CNV;END=82539136;CN=4;SVLEN=100219 GT ./. chr3 82539136 GAIN:chr3:82539136-82539354 N . . IMPRECISE;SVTYPE=CNV;END=82539354;CN=5;SVLEN=218 GT ./. chr3 82550000 LOH:chr3:82550000-82650000 N . . IMPRECISE;SVTYPE=CNV;END=82650000;SVLEN=100000 GT ./. chr3 82657216 GAIN:chr3:82657216-82659269 N . . IMPRECISE;SVTYPE=CNV;END=82659269;CN=4;SVLEN=2053 GT ./. chr3 82659269 GAIN:chr3:82659269-82660214 N . . IMPRECISE;SVTYPE=CNV;END=82660214;CN=5;SVLEN=945 GT ./. chr3 82660214 GAIN:chr3:82660214-83851080 N . . IMPRECISE;SVTYPE=CNV;END=83851080;CN=4;SVLEN=1190866 GT ./. chr3 83851080 GAIN:chr3:83851080-83851254 N . . IMPRECISE;SVTYPE=CNV;END=83851254;CN=5;SVLEN=174 GT ./. chr3 83851254 GAIN:chr3:83851254-83851538 N . . IMPRECISE;SVTYPE=CNV;END=83851538;CN=4;SVLEN=284 GT ./. chr3 84209359 GAIN:chr3:84209359-85434127 N . . IMPRECISE;SVTYPE=CNV;END=85434127;CN=4;SVLEN=1224768 GT ./. chr3 85434127 GAIN:chr3:85434127-85434137 N . . IMPRECISE;SVTYPE=CNV;END=85434137;CN=4;SVLEN=10 GT ./. chr3 85434137 GAIN:chr3:85434137-85450000 N . . IMPRECISE;SVTYPE=CNV;END=85450000;CN=3;SVLEN=15863 GT ./. chr3 85450000 LOH:chr3:85450000-85635372 N . . IMPRECISE;SVTYPE=CNV;END=85635372;SVLEN=185372 GT ./. chr3 85635372 GAINLOH:chr3:85635372-85635664 N , . . IMPRECISE;SVTYPE=CNV;END=85635664;CN=4;SVLEN=292 GT ./. chr3 85635664 GAIN:chr3:85635664-85636898 N . . IMPRECISE;SVTYPE=CNV;END=85636898;CN=4;SVLEN=1234 GT ./. chr3 85636898 GAIN:chr3:85636898-85650000 N . . IMPRECISE;SVTYPE=CNV;END=85650000;CN=5;SVLEN=13102 GT ./. chr3 85650000 GAIN:chr3:85650000-90550102 N . . IMPRECISE;SVTYPE=CNV;END=90550102;CN=4;SVLEN=4900102 GT ./. chr3 90550202 GAIN:chr3:90550202-90565295 N . . IMPRECISE;SVTYPE=CNV;END=90565295;CN=4;SVLEN=15093 GT ./. chr3 90568828 GAIN:chr3:90568828-90699772 N . . IMPRECISE;SVTYPE=CNV;END=90699772;CN=4;SVLEN=130944 GT ./. chr3 90699792 GAIN:chr3:90699792-90722458 N . . IMPRECISE;SVTYPE=CNV;END=90722458;CN=4;SVLEN=22666 GT ./. chr3 90772458 GAIN:chr3:90772458-91233586 N . . IMPRECISE;SVTYPE=CNV;END=91233586;CN=4;SVLEN=461128 GT ./. chr3 91233686 GAIN:chr3:91233686-91247622 N . . IMPRECISE;SVTYPE=CNV;END=91247622;CN=4;SVLEN=13936 GT ./. chr3 91247722 GAIN:chr3:91247722-91249905 N . . IMPRECISE;SVTYPE=CNV;END=91249905;CN=4;SVLEN=2183 GT ./. chr3 91256421 GAIN:chr3:91256421-91257890 N . . IMPRECISE;SVTYPE=CNV;END=91257890;CN=4;SVLEN=1469 GT ./. chr3 91260180 GAIN:chr3:91260180-91265381 N . . IMPRECISE;SVTYPE=CNV;END=91265381;CN=4;SVLEN=5201 GT ./. chr3 91276994 GAIN:chr3:91276994-91282175 N . . IMPRECISE;SVTYPE=CNV;END=91282175;CN=4;SVLEN=5181 GT ./. chr3 91282734 GAIN:chr3:91282734-91291069 N . . IMPRECISE;SVTYPE=CNV;END=91291069;CN=4;SVLEN=8335 GT ./. chr3 91291218 GAIN:chr3:91291218-91345078 N . . IMPRECISE;SVTYPE=CNV;END=91345078;CN=4;SVLEN=53860 GT ./. chr3 91345173 GAIN:chr3:91345173-91364131 N . . IMPRECISE;SVTYPE=CNV;END=91364131;CN=4;SVLEN=18958 GT ./. chr3 91364151 GAIN:chr3:91364151-91438798 N . . IMPRECISE;SVTYPE=CNV;END=91438798;CN=4;SVLEN=74647 GT ./. chr3 91438818 GAIN:chr3:91438818-91550000 N . . IMPRECISE;SVTYPE=CNV;END=91550000;CN=4;SVLEN=111182 GT ./. chr3 93719281 LOH:chr3:93719281-114378211 N . . IMPRECISE;SVTYPE=CNV;END=114378211;SVLEN=20658930 GT ./. chr3 114378594 LOSS:chr3:114378594-114449338 N . . IMPRECISE;SVTYPE=CNV;END=114449338;CN=0;SVLEN=70744 GT ./. chr3 114450000 LOH:chr3:114450000-127664013 N . . IMPRECISE;SVTYPE=CNV;END=127664013;SVLEN=13214013 GT ./. chr3 127664013 GAINLOH:chr3:127664013-127665065 N , . . IMPRECISE;SVTYPE=CNV;END=127665065;CN=3;SVLEN=1052 GT ./. chr3 127665065 GAINLOH:chr3:127665065-129641899 N , . . IMPRECISE;SVTYPE=CNV;END=129641899;CN=4;SVLEN=1976834 GT ./. chr3 129641899 GAIN:chr3:129641899-129721177 N . . IMPRECISE;SVTYPE=CNV;END=129721177;CN=4;SVLEN=79278 GT ./. chr3 129721177 GAINLOH:chr3:129721177-135250000 N , . . IMPRECISE;SVTYPE=CNV;END=135250000;CN=4;SVLEN=5528823 GT ./. chr3 135250000 GAIN:chr3:135250000-135300000 N . . IMPRECISE;SVTYPE=CNV;END=135300000;CN=4;SVLEN=50000 GT ./. chr3 135300000 GAINLOH:chr3:135300000-161997028 N , . . IMPRECISE;SVTYPE=CNV;END=161997028;CN=4;SVLEN=26697028 GT ./. chr3 161997028 LOH:chr3:161997028-162794160 N . . IMPRECISE;SVTYPE=CNV;END=162794160;SVLEN=797132 GT ./. chr3 162909058 LOH:chr3:162909058-165500000 N . . IMPRECISE;SVTYPE=CNV;END=165500000;SVLEN=2590942 GT ./. chr3 165550000 LOH:chr3:165550000-168050000 N . . IMPRECISE;SVTYPE=CNV;END=168050000;SVLEN=2500000 GT ./. chr3 168100000 LOH:chr3:168100000-169250000 N . . IMPRECISE;SVTYPE=CNV;END=169250000;SVLEN=1150000 GT ./. chr3 169303536 GAIN:chr3:169303536-170700000 N . . IMPRECISE;SVTYPE=CNV;END=170700000;CN=4;SVLEN=1396464 GT ./. chr3 170700000 GAIN:chr3:170700000-170750000 N . . IMPRECISE;SVTYPE=CNV;END=170750000;CN=5;SVLEN=50000 GT ./. chr3 170750000 GAIN:chr3:170750000-184040643 N . . IMPRECISE;SVTYPE=CNV;END=184040643;CN=4;SVLEN=13290643 GT ./. chr3 184040643 GAIN:chr3:184040643-193123070 N . . IMPRECISE;SVTYPE=CNV;END=193123070;CN=3;SVLEN=9082427 GT ./. chr3 193124217 LOH:chr3:193124217-193814622 N . . IMPRECISE;SVTYPE=CNV;END=193814622;SVLEN=690405 GT ./. chr3 193814622 GAINLOH:chr3:193814622-193940675 N , . . IMPRECISE;SVTYPE=CNV;END=193940675;CN=3;SVLEN=126053 GT ./. chr3 193940675 LOH:chr3:193940675-195616043 N . . IMPRECISE;SVTYPE=CNV;END=195616043;SVLEN=1675368 GT ./. chr3 195750513 LOH:chr3:195750513-198120030 N . . IMPRECISE;SVTYPE=CNV;END=198120030;SVLEN=2369517 GT ./. chr4 751184 LOSS:chr4:751184-800051 N . . IMPRECISE;SVTYPE=CNV;END=800051;CN=0;SVLEN=48867 GT ./. chr4 800052 LOH:chr4:800052-1429358 N . . IMPRECISE;SVTYPE=CNV;END=1429358;SVLEN=629306 GT ./. chr4 1434206 LOH:chr4:1434206-1435794 N . . IMPRECISE;SVTYPE=CNV;END=1435794;SVLEN=1588 GT ./. chr4 1441552 LOH:chr4:1441552-8797477 N . . IMPRECISE;SVTYPE=CNV;END=8797477;SVLEN=7355925 GT ./. chr4 8816477 LOH:chr4:8816477-9272916 N . . IMPRECISE;SVTYPE=CNV;END=9272916;SVLEN=456439 GT ./. chr4 9322916 LOH:chr4:9322916-14260590 N . . IMPRECISE;SVTYPE=CNV;END=14260590;SVLEN=4937674 GT ./. chr4 14260590 LOSS:chr4:14260590-24786469 N . . IMPRECISE;SVTYPE=CNV;END=24786469;CN=1;SVLEN=10525879 GT ./. chr4 24807796 GAIN:chr4:24807796-31819295 N . . IMPRECISE;SVTYPE=CNV;END=31819295;CN=3;SVLEN=7011499 GT ./. chr4 31832569 GAIN:chr4:31832569-31835775 N . . IMPRECISE;SVTYPE=CNV;END=31835775;CN=3;SVLEN=3206 GT ./. chr4 31835795 GAIN:chr4:31835795-32833016 N . . IMPRECISE;SVTYPE=CNV;END=32833016;CN=3;SVLEN=997221 GT ./. chr4 32839016 GAIN:chr4:32839016-37328961 N . . IMPRECISE;SVTYPE=CNV;END=37328961;CN=3;SVLEN=4489945 GT ./. chr4 42903024 GAIN:chr4:42903024-49090661 N . . IMPRECISE;SVTYPE=CNV;END=49090661;CN=3;SVLEN=6187637 GT ./. chr4 49090661 GAIN:chr4:49090661-49159691 N . . IMPRECISE;SVTYPE=CNV;END=49159691;CN=4;SVLEN=69030 GT ./. chr4 49159691 GAIN:chr4:49159691-49159911 N . . IMPRECISE;SVTYPE=CNV;END=49159911;CN=5;SVLEN=220 GT ./. chr4 49159911 GAIN:chr4:49159911-49260097 N . . IMPRECISE;SVTYPE=CNV;END=49260097;CN=4;SVLEN=100186 GT ./. chr4 49260097 GAIN:chr4:49260097-49261216 N . . IMPRECISE;SVTYPE=CNV;END=49261216;CN=5;SVLEN=1119 GT ./. chr4 49261216 GAIN:chr4:49261216-49324181 N . . IMPRECISE;SVTYPE=CNV;END=49324181;CN=4;SVLEN=62965 GT ./. chr4 49324181 GAIN:chr4:49324181-49336924 N . . IMPRECISE;SVTYPE=CNV;END=49336924;CN=3;SVLEN=12743 GT ./. chr4 49550000 GAIN:chr4:49550000-49580640 N . . IMPRECISE;SVTYPE=CNV;END=49580640;CN=4;SVLEN=30640 GT ./. chr4 49580640 GAIN:chr4:49580640-49580732 N . . IMPRECISE;SVTYPE=CNV;END=49580732;CN=4;SVLEN=92 GT ./. chr4 49580732 GAIN:chr4:49580732-49658100 N . . IMPRECISE;SVTYPE=CNV;END=49658100;CN=3;SVLEN=77368 GT ./. chr4 49708100 GAIN:chr4:49708100-49711961 N . . IMPRECISE;SVTYPE=CNV;END=49711961;CN=3;SVLEN=3861 GT ./. chr4 49712061 GAIN:chr4:49712061-49757588 N . . IMPRECISE;SVTYPE=CNV;END=49757588;CN=3;SVLEN=45527 GT ./. chr4 49757588 GAIN:chr4:49757588-49759510 N . . IMPRECISE;SVTYPE=CNV;END=49759510;CN=4;SVLEN=1922 GT ./. chr4 49759510 GAIN:chr4:49759510-50200000 N . . IMPRECISE;SVTYPE=CNV;END=50200000;CN=3;SVLEN=440490 GT ./. chr4 50250000 GAIN:chr4:50250000-50500000 N . . IMPRECISE;SVTYPE=CNV;END=50500000;CN=4;SVLEN=250000 GT ./. chr4 50500000 GAIN:chr4:50500000-50669949 N . . IMPRECISE;SVTYPE=CNV;END=50669949;CN=4;SVLEN=169949 GT ./. chr4 50669949 GAIN:chr4:50669949-51743951 N . . IMPRECISE;SVTYPE=CNV;END=51743951;CN=3;SVLEN=1074002 GT ./. chr4 51800000 GAIN:chr4:51800000-58878793 N . . IMPRECISE;SVTYPE=CNV;END=58878793;CN=3;SVLEN=7078793 GT ./. chr4 58921381 GAIN:chr4:58921381-68513014 N . . IMPRECISE;SVTYPE=CNV;END=68513014;CN=3;SVLEN=9591633 GT ./. chr4 68623426 GAIN:chr4:68623426-88026586 N . . IMPRECISE;SVTYPE=CNV;END=88026586;CN=3;SVLEN=19403160 GT ./. chr4 88026586 GAIN:chr4:88026586-95250000 N . . IMPRECISE;SVTYPE=CNV;END=95250000;CN=4;SVLEN=7223414 GT ./. chr4 95250000 GAIN:chr4:95250000-95258654 N . . IMPRECISE;SVTYPE=CNV;END=95258654;CN=5;SVLEN=8654 GT ./. chr4 95258654 GAIN:chr4:95258654-97440325 N . . IMPRECISE;SVTYPE=CNV;END=97440325;CN=6;SVLEN=2181671 GT ./. chr4 97440325 GAIN:chr4:97440325-97450000 N . . IMPRECISE;SVTYPE=CNV;END=97450000;CN=5;SVLEN=9675 GT ./. chr4 97450000 GAIN:chr4:97450000-136898779 N . . IMPRECISE;SVTYPE=CNV;END=136898779;CN=4;SVLEN=39448779 GT ./. chr4 136900000 LOH:chr4:136900000-139400000 N . . IMPRECISE;SVTYPE=CNV;END=139400000;SVLEN=2500000 GT ./. chr4 139404015 GAIN:chr4:139404015-139450000 N . . IMPRECISE;SVTYPE=CNV;END=139450000;CN=3;SVLEN=45985 GT ./. chr4 139450000 GAIN:chr4:139450000-140520754 N . . IMPRECISE;SVTYPE=CNV;END=140520754;CN=4;SVLEN=1070754 GT ./. chr4 140524184 LOH:chr4:140524184-169867111 N . . IMPRECISE;SVTYPE=CNV;END=169867111;SVLEN=29342927 GT ./. chr4 169867111 GAINLOH:chr4:169867111-169867300 N , . . IMPRECISE;SVTYPE=CNV;END=169867300;CN=3;SVLEN=189 GT ./. chr4 169867300 GAINLOH:chr4:169867300-170021709 N , . . IMPRECISE;SVTYPE=CNV;END=170021709;CN=4;SVLEN=154409 GT ./. chr4 170021709 GAINLOH:chr4:170021709-170021825 N , . . IMPRECISE;SVTYPE=CNV;END=170021825;CN=3;SVLEN=116 GT ./. chr4 170021825 LOH:chr4:170021825-189996031 N . . IMPRECISE;SVTYPE=CNV;END=189996031;SVLEN=19974206 GT ./. chr5 12041 GAIN:chr5:12041-12072 N . . IMPRECISE;SVTYPE=CNV;END=12072;CN=7;SVLEN=31 GT ./. chr5 12072 GAIN:chr5:12072-700000 N . . IMPRECISE;SVTYPE=CNV;END=700000;CN=6;SVLEN=687928 GT ./. chr5 700000 GAIN:chr5:700000-800000 N . . IMPRECISE;SVTYPE=CNV;END=800000;CN=7;SVLEN=100000 GT ./. chr5 800000 GAIN:chr5:800000-7923570 N . . IMPRECISE;SVTYPE=CNV;END=7923570;CN=6;SVLEN=7123570 GT ./. chr5 7923570 GAIN:chr5:7923570-7950000 N . . IMPRECISE;SVTYPE=CNV;END=7950000;CN=5;SVLEN=26430 GT ./. chr5 7950000 GAIN:chr5:7950000-16414363 N . . IMPRECISE;SVTYPE=CNV;END=16414363;CN=4;SVLEN=8464363 GT ./. chr5 16414363 GAIN:chr5:16414363-16416909 N . . IMPRECISE;SVTYPE=CNV;END=16416909;CN=5;SVLEN=2546 GT ./. chr5 16416909 GAIN:chr5:16416909-17530548 N . . IMPRECISE;SVTYPE=CNV;END=17530548;CN=4;SVLEN=1113639 GT ./. chr5 17580548 GAIN:chr5:17580548-18427276 N . . IMPRECISE;SVTYPE=CNV;END=18427276;CN=4;SVLEN=846728 GT ./. chr5 18427276 GAIN:chr5:18427276-18600000 N . . IMPRECISE;SVTYPE=CNV;END=18600000;CN=5;SVLEN=172724 GT ./. chr5 18600000 GAIN:chr5:18600000-18650000 N . . IMPRECISE;SVTYPE=CNV;END=18650000;CN=4;SVLEN=50000 GT ./. chr5 18650000 GAIN:chr5:18650000-18668809 N . . IMPRECISE;SVTYPE=CNV;END=18668809;CN=5;SVLEN=18809 GT ./. chr5 18668809 GAIN:chr5:18668809-18674933 N . . IMPRECISE;SVTYPE=CNV;END=18674933;CN=4;SVLEN=6124 GT ./. chr5 18674933 GAIN:chr5:18674933-19512135 N . . IMPRECISE;SVTYPE=CNV;END=19512135;CN=5;SVLEN=837202 GT ./. chr5 19512135 GAIN:chr5:19512135-19512398 N . . IMPRECISE;SVTYPE=CNV;END=19512398;CN=4;SVLEN=263 GT ./. chr5 19512398 GAIN:chr5:19512398-19517941 N . . IMPRECISE;SVTYPE=CNV;END=19517941;CN=5;SVLEN=5543 GT ./. chr5 19517941 GAIN:chr5:19517941-19700000 N . . IMPRECISE;SVTYPE=CNV;END=19700000;CN=4;SVLEN=182059 GT ./. chr5 19700000 GAIN:chr5:19700000-19800000 N . . IMPRECISE;SVTYPE=CNV;END=19800000;CN=5;SVLEN=100000 GT ./. chr5 19800000 GAIN:chr5:19800000-19906581 N . . IMPRECISE;SVTYPE=CNV;END=19906581;CN=4;SVLEN=106581 GT ./. chr5 19906581 GAIN:chr5:19906581-19907815 N . . IMPRECISE;SVTYPE=CNV;END=19907815;CN=5;SVLEN=1234 GT ./. chr5 19907815 GAIN:chr5:19907815-22285428 N . . IMPRECISE;SVTYPE=CNV;END=22285428;CN=4;SVLEN=2377613 GT ./. chr5 22285428 GAIN:chr5:22285428-22600000 N . . IMPRECISE;SVTYPE=CNV;END=22600000;CN=5;SVLEN=314572 GT ./. chr5 22600000 GAIN:chr5:22600000-26550000 N . . IMPRECISE;SVTYPE=CNV;END=26550000;CN=4;SVLEN=3950000 GT ./. chr5 26550000 GAIN:chr5:26550000-26600000 N . . IMPRECISE;SVTYPE=CNV;END=26600000;CN=5;SVLEN=50000 GT ./. chr5 26600000 GAIN:chr5:26600000-26850000 N . . IMPRECISE;SVTYPE=CNV;END=26850000;CN=4;SVLEN=250000 GT ./. chr5 26850000 GAIN:chr5:26850000-26900000 N . . IMPRECISE;SVTYPE=CNV;END=26900000;CN=5;SVLEN=50000 GT ./. chr5 26900000 GAIN:chr5:26900000-27014255 N . . IMPRECISE;SVTYPE=CNV;END=27014255;CN=4;SVLEN=114255 GT ./. chr5 27014255 GAIN:chr5:27014255-27050000 N . . IMPRECISE;SVTYPE=CNV;END=27050000;CN=5;SVLEN=35745 GT ./. chr5 27050000 GAIN:chr5:27050000-27200000 N . . IMPRECISE;SVTYPE=CNV;END=27200000;CN=4;SVLEN=150000 GT ./. chr5 27200000 GAIN:chr5:27200000-27300000 N . . IMPRECISE;SVTYPE=CNV;END=27300000;CN=5;SVLEN=100000 GT ./. chr5 27300000 GAIN:chr5:27300000-27389845 N . . IMPRECISE;SVTYPE=CNV;END=27389845;CN=4;SVLEN=89845 GT ./. chr5 27389845 GAIN:chr5:27389845-27591941 N . . IMPRECISE;SVTYPE=CNV;END=27591941;CN=5;SVLEN=202096 GT ./. chr5 27591941 GAIN:chr5:27591941-27603423 N . . IMPRECISE;SVTYPE=CNV;END=27603423;CN=4;SVLEN=11482 GT ./. chr5 27603423 GAIN:chr5:27603423-27646183 N . . IMPRECISE;SVTYPE=CNV;END=27646183;CN=5;SVLEN=42760 GT ./. chr5 27646183 GAIN:chr5:27646183-28720585 N . . IMPRECISE;SVTYPE=CNV;END=28720585;CN=4;SVLEN=1074402 GT ./. chr5 28720585 GAIN:chr5:28720585-28723482 N . . IMPRECISE;SVTYPE=CNV;END=28723482;CN=5;SVLEN=2897 GT ./. chr5 28723482 GAIN:chr5:28723482-28912678 N . . IMPRECISE;SVTYPE=CNV;END=28912678;CN=4;SVLEN=189196 GT ./. chr5 28912678 GAIN:chr5:28912678-28914616 N . . IMPRECISE;SVTYPE=CNV;END=28914616;CN=5;SVLEN=1938 GT ./. chr5 28914616 GAIN:chr5:28914616-29984905 N . . IMPRECISE;SVTYPE=CNV;END=29984905;CN=4;SVLEN=1070289 GT ./. chr5 29984905 GAIN:chr5:29984905-29985947 N . . IMPRECISE;SVTYPE=CNV;END=29985947;CN=5;SVLEN=1042 GT ./. chr5 29985947 GAIN:chr5:29985947-30139243 N . . IMPRECISE;SVTYPE=CNV;END=30139243;CN=4;SVLEN=153296 GT ./. chr5 30139243 GAIN:chr5:30139243-30202737 N . . IMPRECISE;SVTYPE=CNV;END=30202737;CN=5;SVLEN=63494 GT ./. chr5 30202737 GAIN:chr5:30202737-30400000 N . . IMPRECISE;SVTYPE=CNV;END=30400000;CN=4;SVLEN=197263 GT ./. chr5 30400000 GAIN:chr5:30400000-30550000 N . . IMPRECISE;SVTYPE=CNV;END=30550000;CN=5;SVLEN=150000 GT ./. chr5 30550000 GAIN:chr5:30550000-30750000 N . . IMPRECISE;SVTYPE=CNV;END=30750000;CN=4;SVLEN=200000 GT ./. chr5 30750000 GAIN:chr5:30750000-30800000 N . . IMPRECISE;SVTYPE=CNV;END=30800000;CN=5;SVLEN=50000 GT ./. chr5 30800000 GAIN:chr5:30800000-38148692 N . . IMPRECISE;SVTYPE=CNV;END=38148692;CN=4;SVLEN=7348692 GT ./. chr5 38148692 GAIN:chr5:38148692-38153827 N . . IMPRECISE;SVTYPE=CNV;END=38153827;CN=5;SVLEN=5135 GT ./. chr5 38153827 GAIN:chr5:38153827-38200000 N . . IMPRECISE;SVTYPE=CNV;END=38200000;CN=4;SVLEN=46173 GT ./. chr5 38200000 GAIN:chr5:38200000-38252725 N . . IMPRECISE;SVTYPE=CNV;END=38252725;CN=5;SVLEN=52725 GT ./. chr5 38252725 GAIN:chr5:38252725-38252804 N . . IMPRECISE;SVTYPE=CNV;END=38252804;CN=4;SVLEN=79 GT ./. chr5 38252804 GAIN:chr5:38252804-38252805 N . . IMPRECISE;SVTYPE=CNV;END=38252805;CN=5;SVLEN=1 GT ./. chr5 38252805 GAIN:chr5:38252805-46435900 N . . IMPRECISE;SVTYPE=CNV;END=46435900;CN=4;SVLEN=8183095 GT ./. chr5 46485900 GAIN:chr5:46485900-46550000 N . . IMPRECISE;SVTYPE=CNV;END=46550000;CN=4;SVLEN=64100 GT ./. chr5 46800000 GAIN:chr5:46800000-47061288 N . . IMPRECISE;SVTYPE=CNV;END=47061288;CN=4;SVLEN=261288 GT ./. chr5 47061388 GAIN:chr5:47061388-47069162 N . . IMPRECISE;SVTYPE=CNV;END=47069162;CN=4;SVLEN=7774 GT ./. chr5 47073730 GAIN:chr5:47073730-47078603 N . . IMPRECISE;SVTYPE=CNV;END=47078603;CN=4;SVLEN=4873 GT ./. chr5 47078720 GAIN:chr5:47078720-47079733 N . . IMPRECISE;SVTYPE=CNV;END=47079733;CN=4;SVLEN=1013 GT ./. chr5 47082080 GAIN:chr5:47082080-47106894 N . . IMPRECISE;SVTYPE=CNV;END=47106894;CN=4;SVLEN=24814 GT ./. chr5 47106994 GAIN:chr5:47106994-47153339 N . . IMPRECISE;SVTYPE=CNV;END=47153339;CN=4;SVLEN=46345 GT ./. chr5 47153439 GAIN:chr5:47153439-47296069 N . . IMPRECISE;SVTYPE=CNV;END=47296069;CN=4;SVLEN=142630 GT ./. chr5 47296169 GAIN:chr5:47296169-47300585 N . . IMPRECISE;SVTYPE=CNV;END=47300585;CN=4;SVLEN=4416 GT ./. chr5 47306086 GAIN:chr5:47306086-47308398 N . . IMPRECISE;SVTYPE=CNV;END=47308398;CN=4;SVLEN=2312 GT ./. chr5 49599422 GAIN:chr5:49599422-49600986 N . . IMPRECISE;SVTYPE=CNV;END=49600986;CN=4;SVLEN=1564 GT ./. chr5 49601086 GAIN:chr5:49601086-49603131 N . . IMPRECISE;SVTYPE=CNV;END=49603131;CN=4;SVLEN=2045 GT ./. chr5 49609714 GAIN:chr5:49609714-49611721 N . . IMPRECISE;SVTYPE=CNV;END=49611721;CN=4;SVLEN=2007 GT ./. chr5 49612096 GAIN:chr5:49612096-49618994 N . . IMPRECISE;SVTYPE=CNV;END=49618994;CN=4;SVLEN=6898 GT ./. chr5 49621605 GAIN:chr5:49621605-49628165 N . . IMPRECISE;SVTYPE=CNV;END=49628165;CN=4;SVLEN=6560 GT ./. chr5 49630729 GAIN:chr5:49630729-49633793 N . . IMPRECISE;SVTYPE=CNV;END=49633793;CN=4;SVLEN=3064 GT ./. chr5 49641815 GAIN:chr5:49641815-49646823 N . . IMPRECISE;SVTYPE=CNV;END=49646823;CN=4;SVLEN=5008 GT ./. chr5 49646923 GAIN:chr5:49646923-49650573 N . . IMPRECISE;SVTYPE=CNV;END=49650573;CN=4;SVLEN=3650 GT ./. chr5 49656261 GAIN:chr5:49656261-49661871 N . . IMPRECISE;SVTYPE=CNV;END=49661871;CN=4;SVLEN=5610 GT ./. chr5 49666173 GAIN:chr5:49666173-49667431 N . . IMPRECISE;SVTYPE=CNV;END=49667431;CN=4;SVLEN=1258 GT ./. chr5 49667531 GAIN:chr5:49667531-49721203 N . . IMPRECISE;SVTYPE=CNV;END=49721203;CN=4;SVLEN=53672 GT ./. chr5 49721303 GAIN:chr5:49721303-50059807 N . . IMPRECISE;SVTYPE=CNV;END=50059807;CN=4;SVLEN=338504 GT ./. chr5 50109807 GAIN:chr5:50109807-50144641 N . . IMPRECISE;SVTYPE=CNV;END=50144641;CN=4;SVLEN=34834 GT ./. chr5 50146755 LOH:chr5:50146755-69627728 N . . IMPRECISE;SVTYPE=CNV;END=69627728;SVLEN=19480973 GT ./. chr5 69632162 LOH:chr5:69632162-69633572 N . . IMPRECISE;SVTYPE=CNV;END=69633572;SVLEN=1410 GT ./. chr5 69800000 LOH:chr5:69800000-69850000 N . . IMPRECISE;SVTYPE=CNV;END=69850000;SVLEN=50000 GT ./. chr5 69900000 LOH:chr5:69900000-71000000 N . . IMPRECISE;SVTYPE=CNV;END=71000000;SVLEN=1100000 GT ./. chr5 71009419 LOH:chr5:71009419-71011068 N . . IMPRECISE;SVTYPE=CNV;END=71011068;SVLEN=1649 GT ./. chr5 71011416 LOH:chr5:71011416-71011736 N . . IMPRECISE;SVTYPE=CNV;END=71011736;SVLEN=320 GT ./. chr5 71139058 LOH:chr5:71139058-71200000 N . . IMPRECISE;SVTYPE=CNV;END=71200000;SVLEN=60942 GT ./. chr5 71250000 LOH:chr5:71250000-95900000 N . . IMPRECISE;SVTYPE=CNV;END=95900000;SVLEN=24650000 GT ./. chr5 95950000 LOH:chr5:95950000-96800000 N . . IMPRECISE;SVTYPE=CNV;END=96800000;SVLEN=850000 GT ./. chr5 96850000 LOH:chr5:96850000-99300000 N . . IMPRECISE;SVTYPE=CNV;END=99300000;SVLEN=2450000 GT ./. chr5 99400000 LOH:chr5:99400000-99700000 N . . IMPRECISE;SVTYPE=CNV;END=99700000;SVLEN=300000 GT ./. chr5 99750000 LOH:chr5:99750000-100200000 N . . IMPRECISE;SVTYPE=CNV;END=100200000;SVLEN=450000 GT ./. chr5 100250000 LOH:chr5:100250000-103000000 N . . IMPRECISE;SVTYPE=CNV;END=103000000;SVLEN=2750000 GT ./. chr5 103050000 LOH:chr5:103050000-107150000 N . . IMPRECISE;SVTYPE=CNV;END=107150000;SVLEN=4100000 GT ./. chr5 107200000 LOH:chr5:107200000-107868041 N . . IMPRECISE;SVTYPE=CNV;END=107868041;SVLEN=668041 GT ./. chr5 107868041 LOSS:chr5:107868041-107868571 N . . IMPRECISE;SVTYPE=CNV;END=107868571;CN=1;SVLEN=530 GT ./. chr5 107868571 LOSS:chr5:107868571-108041120 N . . IMPRECISE;SVTYPE=CNV;END=108041120;CN=0;SVLEN=172549 GT ./. chr5 108041792 LOH:chr5:108041792-126786605 N . . IMPRECISE;SVTYPE=CNV;END=126786605;SVLEN=18744813 GT ./. chr5 126786605 LOSS:chr5:126786605-126797419 N . . IMPRECISE;SVTYPE=CNV;END=126797419;CN=0;SVLEN=10814 GT ./. chr5 126797419 LOH:chr5:126797419-126800000 N . . IMPRECISE;SVTYPE=CNV;END=126800000;SVLEN=2581 GT ./. chr5 126804377 LOH:chr5:126804377-132818156 N . . IMPRECISE;SVTYPE=CNV;END=132818156;SVLEN=6013779 GT ./. chr5 132818328 LOH:chr5:132818328-132818410 N . . IMPRECISE;SVTYPE=CNV;END=132818410;SVLEN=82 GT ./. chr5 132818411 LOH:chr5:132818411-139300000 N . . IMPRECISE;SVTYPE=CNV;END=139300000;SVLEN=6481589 GT ./. chr5 139300000 GAINLOH:chr5:139300000-139452659 N , . . IMPRECISE;SVTYPE=CNV;END=139452659;CN=3;SVLEN=152659 GT ./. chr5 139453659 GAINLOH:chr5:139453659-155760324 N , . . IMPRECISE;SVTYPE=CNV;END=155760324;CN=3;SVLEN=16306665 GT ./. chr5 155761324 GAINLOH:chr5:155761324-181300000 N , . . IMPRECISE;SVTYPE=CNV;END=181300000;CN=3;SVLEN=25538676 GT ./. chr5 181300000 GAIN:chr5:181300000-181302438 N . . IMPRECISE;SVTYPE=CNV;END=181302438;CN=3;SVLEN=2438 GT ./. chr6 59750000 GAIN:chr6:59750000-59829934 N . . IMPRECISE;SVTYPE=CNV;END=59829934;CN=5;SVLEN=79934 GT ./. chr6 60229934 GAIN:chr6:60229934-60230218 N . . IMPRECISE;SVTYPE=CNV;END=60230218;CN=5;SVLEN=284 GT ./. chr6 60230218 GAIN:chr6:60230218-61357029 N . . IMPRECISE;SVTYPE=CNV;END=61357029;CN=4;SVLEN=1126811 GT ./. chr6 61363066 GAIN:chr6:61363066-61370554 N . . IMPRECISE;SVTYPE=CNV;END=61370554;CN=4;SVLEN=7488 GT ./. chr6 61371372 GAIN:chr6:61371372-61378482 N . . IMPRECISE;SVTYPE=CNV;END=61378482;CN=4;SVLEN=7110 GT ./. chr6 61378582 GAIN:chr6:61378582-61381502 N . . IMPRECISE;SVTYPE=CNV;END=61381502;CN=4;SVLEN=2920 GT ./. chr6 61381602 GAIN:chr6:61381602-61393846 N . . IMPRECISE;SVTYPE=CNV;END=61393846;CN=4;SVLEN=12244 GT ./. chr6 61393946 GAIN:chr6:61393946-61398161 N . . IMPRECISE;SVTYPE=CNV;END=61398161;CN=4;SVLEN=4215 GT ./. chr6 61398261 GAIN:chr6:61398261-62925013 N . . IMPRECISE;SVTYPE=CNV;END=62925013;CN=4;SVLEN=1526752 GT ./. chr6 62925013 GAIN:chr6:62925013-63900493 N . . IMPRECISE;SVTYPE=CNV;END=63900493;CN=3;SVLEN=975480 GT ./. chr6 69532064 GAIN:chr6:69532064-70470015 N . . IMPRECISE;SVTYPE=CNV;END=70470015;CN=4;SVLEN=937951 GT ./. chr6 70470015 GAIN:chr6:70470015-70475193 N . . IMPRECISE;SVTYPE=CNV;END=70475193;CN=5;SVLEN=5178 GT ./. chr6 70475193 GAIN:chr6:70475193-70610190 N . . IMPRECISE;SVTYPE=CNV;END=70610190;CN=6;SVLEN=134997 GT ./. chr6 70610190 GAIN:chr6:70610190-70698379 N . . IMPRECISE;SVTYPE=CNV;END=70698379;CN=7;SVLEN=88189 GT ./. chr6 70698379 GAIN:chr6:70698379-70728819 N . . IMPRECISE;SVTYPE=CNV;END=70728819;CN=6;SVLEN=30440 GT ./. chr6 70728819 GAIN:chr6:70728819-70728848 N . . IMPRECISE;SVTYPE=CNV;END=70728848;CN=5;SVLEN=29 GT ./. chr6 70728848 GAIN:chr6:70728848-70728913 N . . IMPRECISE;SVTYPE=CNV;END=70728913;CN=6;SVLEN=65 GT ./. chr6 70728913 GAIN:chr6:70728913-70729041 N . . IMPRECISE;SVTYPE=CNV;END=70729041;CN=5;SVLEN=128 GT ./. chr6 70729041 GAIN:chr6:70729041-70730230 N . . IMPRECISE;SVTYPE=CNV;END=70730230;CN=4;SVLEN=1189 GT ./. chr6 70730230 GAIN:chr6:70730230-71295261 N . . IMPRECISE;SVTYPE=CNV;END=71295261;CN=3;SVLEN=565031 GT ./. chr6 71295261 GAIN:chr6:71295261-71296156 N . . IMPRECISE;SVTYPE=CNV;END=71296156;CN=4;SVLEN=895 GT ./. chr6 71296156 GAIN:chr6:71296156-71773989 N . . IMPRECISE;SVTYPE=CNV;END=71773989;CN=5;SVLEN=477833 GT ./. chr6 71773989 GAIN:chr6:71773989-71794213 N . . IMPRECISE;SVTYPE=CNV;END=71794213;CN=6;SVLEN=20224 GT ./. chr6 71794213 GAIN:chr6:71794213-71794257 N . . IMPRECISE;SVTYPE=CNV;END=71794257;CN=5;SVLEN=44 GT ./. chr6 71794257 GAIN:chr6:71794257-71800000 N . . IMPRECISE;SVTYPE=CNV;END=71800000;CN=4;SVLEN=5743 GT ./. chr6 71800000 GAINLOH:chr6:71800000-72000000 N , . . IMPRECISE;SVTYPE=CNV;END=72000000;CN=4;SVLEN=200000 GT ./. chr6 72000000 GAIN:chr6:72000000-72003522 N . . IMPRECISE;SVTYPE=CNV;END=72003522;CN=4;SVLEN=3522 GT ./. chr6 72003522 GAIN:chr6:72003522-72050000 N . . IMPRECISE;SVTYPE=CNV;END=72050000;CN=5;SVLEN=46478 GT ./. chr6 72050000 GAIN:chr6:72050000-72056961 N . . IMPRECISE;SVTYPE=CNV;END=72056961;CN=6;SVLEN=6961 GT ./. chr6 72056961 GAIN:chr6:72056961-72059813 N . . IMPRECISE;SVTYPE=CNV;END=72059813;CN=7;SVLEN=2852 GT ./. chr6 72059813 GAIN:chr6:72059813-72636894 N . . IMPRECISE;SVTYPE=CNV;END=72636894;CN=8;SVLEN=577081 GT ./. chr6 72636894 GAIN:chr6:72636894-72637893 N . . IMPRECISE;SVTYPE=CNV;END=72637893;CN=7;SVLEN=999 GT ./. chr6 72637893 GAIN:chr6:72637893-72650000 N . . IMPRECISE;SVTYPE=CNV;END=72650000;CN=6;SVLEN=12107 GT ./. chr6 72650000 GAIN:chr6:72650000-73159605 N . . IMPRECISE;SVTYPE=CNV;END=73159605;CN=5;SVLEN=509605 GT ./. chr6 73181235 GAIN:chr6:73181235-77437153 N . . IMPRECISE;SVTYPE=CNV;END=77437153;CN=3;SVLEN=4255918 GT ./. chr6 77500000 LOH:chr6:77500000-77700000 N . . IMPRECISE;SVTYPE=CNV;END=77700000;SVLEN=200000 GT ./. chr6 77750000 LOH:chr6:77750000-78250000 N . . IMPRECISE;SVTYPE=CNV;END=78250000;SVLEN=500000 GT ./. chr6 78350000 LOH:chr6:78350000-78400000 N . . IMPRECISE;SVTYPE=CNV;END=78400000;SVLEN=50000 GT ./. chr6 78450000 GAIN:chr6:78450000-84195355 N . . IMPRECISE;SVTYPE=CNV;END=84195355;CN=3;SVLEN=5745355 GT ./. chr6 84215940 LOSS:chr6:84215940-88842717 N . . IMPRECISE;SVTYPE=CNV;END=88842717;CN=1;SVLEN=4626777 GT ./. chr6 88842717 LOH:chr6:88842717-88844898 N . . IMPRECISE;SVTYPE=CNV;END=88844898;SVLEN=2181 GT ./. chr6 88844898 GAINLOH:chr6:88844898-90085624 N , . . IMPRECISE;SVTYPE=CNV;END=90085624;CN=4;SVLEN=1240726 GT ./. chr6 90085624 LOH:chr6:90085624-90087567 N . . IMPRECISE;SVTYPE=CNV;END=90087567;SVLEN=1943 GT ./. chr6 90087653 LOSS:chr6:90087653-94186958 N . . IMPRECISE;SVTYPE=CNV;END=94186958;CN=1;SVLEN=4099305 GT ./. chr6 94186958 LOSS:chr6:94186958-94186976 N . . IMPRECISE;SVTYPE=CNV;END=94186976;CN=0.5;SVLEN=18 GT ./. chr6 94186976 LOSS:chr6:94186976-95020790 N . . IMPRECISE;SVTYPE=CNV;END=95020790;CN=0;SVLEN=833814 GT ./. chr6 95070790 LOSS:chr6:95070790-95755911 N . . IMPRECISE;SVTYPE=CNV;END=95755911;CN=0;SVLEN=685121 GT ./. chr6 95755911 LOSS:chr6:95755911-95755938 N . . IMPRECISE;SVTYPE=CNV;END=95755938;CN=0.5;SVLEN=27 GT ./. chr6 95755938 LOSS:chr6:95755938-95800000 N . . IMPRECISE;SVTYPE=CNV;END=95800000;CN=1;SVLEN=44062 GT ./. chr6 95800000 LOSS:chr6:95800000-96387440 N . . IMPRECISE;SVTYPE=CNV;END=96387440;CN=0;SVLEN=587440 GT ./. chr6 96387440 LOSS:chr6:96387440-96387500 N . . IMPRECISE;SVTYPE=CNV;END=96387500;CN=0.5;SVLEN=60 GT ./. chr6 96387500 LOSS:chr6:96387500-98400000 N . . IMPRECISE;SVTYPE=CNV;END=98400000;CN=1;SVLEN=2012500 GT ./. chr6 98408132 LOH:chr6:98408132-101781430 N . . IMPRECISE;SVTYPE=CNV;END=101781430;SVLEN=3373298 GT ./. chr6 101803951 LOSS:chr6:101803951-101852763 N . . IMPRECISE;SVTYPE=CNV;END=101852763;CN=1;SVLEN=48812 GT ./. chr6 101852763 LOH:chr6:101852763-101853847 N . . IMPRECISE;SVTYPE=CNV;END=101853847;SVLEN=1084 GT ./. chr6 101853847 LOSS:chr6:101853847-101886278 N . . IMPRECISE;SVTYPE=CNV;END=101886278;CN=0.5;SVLEN=32431 GT ./. chr6 101886278 LOSS:chr6:101886278-101890158 N . . IMPRECISE;SVTYPE=CNV;END=101890158;CN=1;SVLEN=3880 GT ./. chr6 101890158 LOSS:chr6:101890158-101890173 N . . IMPRECISE;SVTYPE=CNV;END=101890173;CN=0.5;SVLEN=15 GT ./. chr6 101890173 LOSS:chr6:101890173-105847000 N . . IMPRECISE;SVTYPE=CNV;END=105847000;CN=0;SVLEN=3956827 GT ./. chr6 105847090 LOH:chr6:105847090-105919577 N . . IMPRECISE;SVTYPE=CNV;END=105919577;SVLEN=72487 GT ./. chr6 105919577 GAINLOH:chr6:105919577-115429104 N , . . IMPRECISE;SVTYPE=CNV;END=115429104;CN=3;SVLEN=9509527 GT ./. chr6 115429104 GAIN:chr6:115429104-115429105 N . . IMPRECISE;SVTYPE=CNV;END=115429105;CN=3;SVLEN=1 GT ./. chr6 115429105 GAINLOH:chr6:115429105-115429179 N , . . IMPRECISE;SVTYPE=CNV;END=115429179;CN=3;SVLEN=74 GT ./. chr6 115429179 GAIN:chr6:115429179-115429248 N . . IMPRECISE;SVTYPE=CNV;END=115429248;CN=3;SVLEN=69 GT ./. chr6 115429248 GAIN:chr6:115429248-115452646 N . . IMPRECISE;SVTYPE=CNV;END=115452646;CN=4;SVLEN=23398 GT ./. chr6 115452646 GAINLOH:chr6:115452646-115900000 N , . . IMPRECISE;SVTYPE=CNV;END=115900000;CN=4;SVLEN=447354 GT ./. chr6 115900000 GAIN:chr6:115900000-115903222 N . . IMPRECISE;SVTYPE=CNV;END=115903222;CN=4;SVLEN=3222 GT ./. chr6 115903222 GAINLOH:chr6:115903222-116800000 N , . . IMPRECISE;SVTYPE=CNV;END=116800000;CN=4;SVLEN=896778 GT ./. chr6 116800000 GAINLOH:chr6:116800000-120416137 N , . . IMPRECISE;SVTYPE=CNV;END=120416137;CN=5;SVLEN=3616137 GT ./. chr6 120416137 GAINLOH:chr6:120416137-122159809 N , . . IMPRECISE;SVTYPE=CNV;END=122159809;CN=4;SVLEN=1743672 GT ./. chr6 122159809 GAINLOH:chr6:122159809-123084706 N , . . IMPRECISE;SVTYPE=CNV;END=123084706;CN=5;SVLEN=924897 GT ./. chr6 123084706 GAINLOH:chr6:123084706-123183967 N , . . IMPRECISE;SVTYPE=CNV;END=123183967;CN=4;SVLEN=99261 GT ./. chr6 123183967 GAINLOH:chr6:123183967-161349490 N , . . IMPRECISE;SVTYPE=CNV;END=161349490;CN=3;SVLEN=38165523 GT ./. chr6 161349490 LOH:chr6:161349490-166400000 N . . IMPRECISE;SVTYPE=CNV;END=166400000;SVLEN=5050510 GT ./. chr6 166401669 GAIN:chr6:166401669-167591393 N . . IMPRECISE;SVTYPE=CNV;END=167591393;CN=3;SVLEN=1189724 GT ./. chr6 167641393 GAIN:chr6:167641393-170740469 N . . IMPRECISE;SVTYPE=CNV;END=170740469;CN=3;SVLEN=3099076 GT ./. chr7 23927 GAIN:chr7:23927-41604 N . . IMPRECISE;SVTYPE=CNV;END=41604;CN=4;SVLEN=17677 GT ./. chr7 41604 GAINLOH:chr7:41604-50000 N , . . IMPRECISE;SVTYPE=CNV;END=50000;CN=4;SVLEN=8396 GT ./. chr7 50000 GAINLOH:chr7:50000-157498 N , . . IMPRECISE;SVTYPE=CNV;END=157498;CN=3;SVLEN=107498 GT ./. chr7 157498 GAINLOH:chr7:157498-237846 N , . . IMPRECISE;SVTYPE=CNV;END=237846;CN=4;SVLEN=80348 GT ./. chr7 240242 GAINLOH:chr7:240242-250000 N , . . IMPRECISE;SVTYPE=CNV;END=250000;CN=4;SVLEN=9758 GT ./. chr7 250000 GAINLOH:chr7:250000-350000 N , . . IMPRECISE;SVTYPE=CNV;END=350000;CN=3;SVLEN=100000 GT ./. chr7 350000 GAINLOH:chr7:350000-5252815 N , . . IMPRECISE;SVTYPE=CNV;END=5252815;CN=4;SVLEN=4902815 GT ./. chr7 5252815 GAINLOH:chr7:5252815-5619065 N , . . IMPRECISE;SVTYPE=CNV;END=5619065;CN=3;SVLEN=366250 GT ./. chr7 5619065 GAINLOH:chr7:5619065-10390572 N , . . IMPRECISE;SVTYPE=CNV;END=10390572;CN=4;SVLEN=4771507 GT ./. chr7 10390572 GAINLOH:chr7:10390572-19765885 N , . . IMPRECISE;SVTYPE=CNV;END=19765885;CN=3;SVLEN=9375313 GT ./. chr7 19765885 LOH:chr7:19765885-23512439 N . . IMPRECISE;SVTYPE=CNV;END=23512439;SVLEN=3746554 GT ./. chr7 23512439 LOSS:chr7:23512439-25976608 N . . IMPRECISE;SVTYPE=CNV;END=25976608;CN=1;SVLEN=2464169 GT ./. chr7 25979780 GAIN:chr7:25979780-40700000 N . . IMPRECISE;SVTYPE=CNV;END=40700000;CN=3;SVLEN=14720220 GT ./. chr7 40700000 GAIN:chr7:40700000-46600000 N . . IMPRECISE;SVTYPE=CNV;END=46600000;CN=4;SVLEN=5900000 GT ./. chr7 46600000 GAIN:chr7:46600000-47050000 N . . IMPRECISE;SVTYPE=CNV;END=47050000;CN=3;SVLEN=450000 GT ./. chr7 47050000 GAIN:chr7:47050000-47223111 N . . IMPRECISE;SVTYPE=CNV;END=47223111;CN=4;SVLEN=173111 GT ./. chr7 47223111 GAIN:chr7:47223111-47223525 N . . IMPRECISE;SVTYPE=CNV;END=47223525;CN=3;SVLEN=414 GT ./. chr7 47223525 GAIN:chr7:47223525-47244088 N . . IMPRECISE;SVTYPE=CNV;END=47244088;CN=4;SVLEN=20563 GT ./. chr7 47244088 GAIN:chr7:47244088-47244376 N . . IMPRECISE;SVTYPE=CNV;END=47244376;CN=3;SVLEN=288 GT ./. chr7 47244376 GAIN:chr7:47244376-47250000 N . . IMPRECISE;SVTYPE=CNV;END=47250000;CN=4;SVLEN=5624 GT ./. chr7 47250000 GAIN:chr7:47250000-47300000 N . . IMPRECISE;SVTYPE=CNV;END=47300000;CN=3;SVLEN=50000 GT ./. chr7 47300000 GAIN:chr7:47300000-57127793 N . . IMPRECISE;SVTYPE=CNV;END=57127793;CN=4;SVLEN=9827793 GT ./. chr7 57127793 GAIN:chr7:57127793-57150000 N . . IMPRECISE;SVTYPE=CNV;END=57150000;CN=3;SVLEN=22207 GT ./. chr7 57150000 GAIN:chr7:57150000-57152188 N . . IMPRECISE;SVTYPE=CNV;END=57152188;CN=5;SVLEN=2188 GT ./. chr7 57152188 GAIN:chr7:57152188-57152979 N . . IMPRECISE;SVTYPE=CNV;END=57152979;CN=6;SVLEN=791 GT ./. chr7 57152979 GAIN:chr7:57152979-57153071 N . . IMPRECISE;SVTYPE=CNV;END=57153071;CN=7;SVLEN=92 GT ./. chr7 57153071 GAIN:chr7:57153071-57153122 N . . IMPRECISE;SVTYPE=CNV;END=57153122;CN=6;SVLEN=51 GT ./. chr7 57153122 GAIN:chr7:57153122-57300000 N . . IMPRECISE;SVTYPE=CNV;END=57300000;CN=7;SVLEN=146878 GT ./. chr7 57300000 GAIN:chr7:57300000-57350000 N . . IMPRECISE;SVTYPE=CNV;END=57350000;CN=8;SVLEN=50000 GT ./. chr7 57350000 GAIN:chr7:57350000-57363620 N . . IMPRECISE;SVTYPE=CNV;END=57363620;CN=9;SVLEN=13620 GT ./. chr7 57363620 GAIN:chr7:57363620-57397999 N . . IMPRECISE;SVTYPE=CNV;END=57397999;CN=10;SVLEN=34379 GT ./. chr7 57397999 GAIN:chr7:57397999-57400000 N . . IMPRECISE;SVTYPE=CNV;END=57400000;CN=9;SVLEN=2001 GT ./. chr7 57400000 GAIN:chr7:57400000-57513383 N . . IMPRECISE;SVTYPE=CNV;END=57513383;CN=8;SVLEN=113383 GT ./. chr7 57513383 GAIN:chr7:57513383-57519981 N . . IMPRECISE;SVTYPE=CNV;END=57519981;CN=7;SVLEN=6598 GT ./. chr7 57519981 GAIN:chr7:57519981-57550000 N . . IMPRECISE;SVTYPE=CNV;END=57550000;CN=6;SVLEN=30019 GT ./. chr7 57550000 GAIN:chr7:57550000-57600000 N . . IMPRECISE;SVTYPE=CNV;END=57600000;CN=5;SVLEN=50000 GT ./. chr7 57600000 GAIN:chr7:57600000-58119653 N . . IMPRECISE;SVTYPE=CNV;END=58119653;CN=6;SVLEN=519653 GT ./. chr7 58169653 GAIN:chr7:58169653-58206137 N . . IMPRECISE;SVTYPE=CNV;END=58206137;CN=7;SVLEN=36484 GT ./. chr7 58206137 GAIN:chr7:58206137-58300000 N . . IMPRECISE;SVTYPE=CNV;END=58300000;CN=7;SVLEN=93863 GT ./. chr7 58300000 GAIN:chr7:58300000-58400000 N . . IMPRECISE;SVTYPE=CNV;END=58400000;CN=6;SVLEN=100000 GT ./. chr7 58400000 GAIN:chr7:58400000-58500000 N . . IMPRECISE;SVTYPE=CNV;END=58500000;CN=7;SVLEN=100000 GT ./. chr7 58550000 GAIN:chr7:58550000-58600000 N . . IMPRECISE;SVTYPE=CNV;END=58600000;CN=7;SVLEN=50000 GT ./. chr7 58600000 GAIN:chr7:58600000-58650000 N . . IMPRECISE;SVTYPE=CNV;END=58650000;CN=6;SVLEN=50000 GT ./. chr7 58650000 GAIN:chr7:58650000-58700000 N . . IMPRECISE;SVTYPE=CNV;END=58700000;CN=7;SVLEN=50000 GT ./. chr7 58750000 GAIN:chr7:58750000-59000000 N . . IMPRECISE;SVTYPE=CNV;END=59000000;CN=5;SVLEN=250000 GT ./. chr7 59000000 GAIN:chr7:59000000-59050000 N . . IMPRECISE;SVTYPE=CNV;END=59050000;CN=7;SVLEN=50000 GT ./. chr7 59050000 GAIN:chr7:59050000-59100000 N . . IMPRECISE;SVTYPE=CNV;END=59100000;CN=6;SVLEN=50000 GT ./. chr7 59100000 GAIN:chr7:59100000-59150000 N . . IMPRECISE;SVTYPE=CNV;END=59150000;CN=7;SVLEN=50000 GT ./. chr7 59150000 GAIN:chr7:59150000-59300000 N . . IMPRECISE;SVTYPE=CNV;END=59300000;CN=6;SVLEN=150000 GT ./. chr7 59350000 GAIN:chr7:59350000-59500000 N . . IMPRECISE;SVTYPE=CNV;END=59500000;CN=5;SVLEN=150000 GT ./. chr7 59500000 GAIN:chr7:59500000-59550000 N . . IMPRECISE;SVTYPE=CNV;END=59550000;CN=7;SVLEN=50000 GT ./. chr7 59550000 GAIN:chr7:59550000-59600000 N . . IMPRECISE;SVTYPE=CNV;END=59600000;CN=6;SVLEN=50000 GT ./. chr7 59650000 GAIN:chr7:59650000-59700000 N . . IMPRECISE;SVTYPE=CNV;END=59700000;CN=7;SVLEN=50000 GT ./. chr7 59700000 GAIN:chr7:59700000-60800000 N . . IMPRECISE;SVTYPE=CNV;END=60800000;CN=5;SVLEN=1100000 GT ./. chr7 60878234 GAIN:chr7:60878234-61063378 N . . IMPRECISE;SVTYPE=CNV;END=61063378;CN=7;SVLEN=185144 GT ./. chr7 61063426 GAIN:chr7:61063426-61327788 N . . IMPRECISE;SVTYPE=CNV;END=61327788;CN=7;SVLEN=264362 GT ./. chr7 61377788 GAIN:chr7:61377788-61528020 N . . IMPRECISE;SVTYPE=CNV;END=61528020;CN=8;SVLEN=150232 GT ./. chr7 61578020 GAIN:chr7:61578020-61964169 N . . IMPRECISE;SVTYPE=CNV;END=61964169;CN=7;SVLEN=386149 GT ./. chr7 61967063 GAIN:chr7:61967063-61976104 N . . IMPRECISE;SVTYPE=CNV;END=61976104;CN=7;SVLEN=9041 GT ./. chr7 62026104 GAIN:chr7:62026104-62450000 N . . IMPRECISE;SVTYPE=CNV;END=62450000;CN=7;SVLEN=423896 GT ./. chr7 62450000 GAIN:chr7:62450000-62456779 N . . IMPRECISE;SVTYPE=CNV;END=62456779;CN=8;SVLEN=6779 GT ./. chr7 62506779 GAIN:chr7:62506779-66440748 N . . IMPRECISE;SVTYPE=CNV;END=66440748;CN=5;SVLEN=3933969 GT ./. chr7 66440748 GAIN:chr7:66440748-66440983 N . . IMPRECISE;SVTYPE=CNV;END=66440983;CN=4;SVLEN=235 GT ./. chr7 66440983 GAIN:chr7:66440983-75450000 N . . IMPRECISE;SVTYPE=CNV;END=75450000;CN=3;SVLEN=9009017 GT ./. chr7 75450000 GAIN:chr7:75450000-75453555 N . . IMPRECISE;SVTYPE=CNV;END=75453555;CN=4;SVLEN=3555 GT ./. chr7 75453555 GAIN:chr7:75453555-75453698 N . . IMPRECISE;SVTYPE=CNV;END=75453698;CN=5;SVLEN=143 GT ./. chr7 75453698 GAIN:chr7:75453698-75453743 N . . IMPRECISE;SVTYPE=CNV;END=75453743;CN=4;SVLEN=45 GT ./. chr7 75453743 GAIN:chr7:75453743-81434186 N . . IMPRECISE;SVTYPE=CNV;END=81434186;CN=5;SVLEN=5980443 GT ./. chr7 81434186 GAIN:chr7:81434186-81500000 N . . IMPRECISE;SVTYPE=CNV;END=81500000;CN=6;SVLEN=65814 GT ./. chr7 81500000 GAIN:chr7:81500000-85750000 N . . IMPRECISE;SVTYPE=CNV;END=85750000;CN=5;SVLEN=4250000 GT ./. chr7 85750000 GAIN:chr7:85750000-85782791 N . . IMPRECISE;SVTYPE=CNV;END=85782791;CN=6;SVLEN=32791 GT ./. chr7 85782791 GAIN:chr7:85782791-85874950 N . . IMPRECISE;SVTYPE=CNV;END=85874950;CN=7;SVLEN=92159 GT ./. chr7 85874950 GAIN:chr7:85874950-85900000 N . . IMPRECISE;SVTYPE=CNV;END=85900000;CN=6;SVLEN=25050 GT ./. chr7 85900000 GAIN:chr7:85900000-104950000 N . . IMPRECISE;SVTYPE=CNV;END=104950000;CN=5;SVLEN=19050000 GT ./. chr7 104950000 GAIN:chr7:104950000-105000000 N . . IMPRECISE;SVTYPE=CNV;END=105000000;CN=6;SVLEN=50000 GT ./. chr7 105000000 GAIN:chr7:105000000-112950000 N . . IMPRECISE;SVTYPE=CNV;END=112950000;CN=5;SVLEN=7950000 GT ./. chr7 112950000 GAIN:chr7:112950000-112953886 N . . IMPRECISE;SVTYPE=CNV;END=112953886;CN=6;SVLEN=3886 GT ./. chr7 112953886 GAIN:chr7:112953886-119851984 N . . IMPRECISE;SVTYPE=CNV;END=119851984;CN=7;SVLEN=6898098 GT ./. chr7 119851984 GAIN:chr7:119851984-121100000 N . . IMPRECISE;SVTYPE=CNV;END=121100000;CN=6;SVLEN=1248016 GT ./. chr7 121100000 GAIN:chr7:121100000-121412334 N . . IMPRECISE;SVTYPE=CNV;END=121412334;CN=5;SVLEN=312334 GT ./. chr7 121412334 GAIN:chr7:121412334-121518376 N . . IMPRECISE;SVTYPE=CNV;END=121518376;CN=6;SVLEN=106042 GT ./. chr7 121518376 GAIN:chr7:121518376-143650804 N . . IMPRECISE;SVTYPE=CNV;END=143650804;CN=5;SVLEN=22132428 GT ./. chr7 143700804 GAIN:chr7:143700804-152300000 N . . IMPRECISE;SVTYPE=CNV;END=152300000;CN=6;SVLEN=8599196 GT ./. chr7 152300000 GAIN:chr7:152300000-152313756 N . . IMPRECISE;SVTYPE=CNV;END=152313756;CN=7;SVLEN=13756 GT ./. chr7 152313756 GAIN:chr7:152313756-152350000 N . . IMPRECISE;SVTYPE=CNV;END=152350000;CN=8;SVLEN=36244 GT ./. chr7 152350000 GAIN:chr7:152350000-152374091 N . . IMPRECISE;SVTYPE=CNV;END=152374091;CN=6;SVLEN=24091 GT ./. chr7 152374091 GAIN:chr7:152374091-152375586 N . . IMPRECISE;SVTYPE=CNV;END=152375586;CN=7;SVLEN=1495 GT ./. chr7 152375586 GAIN:chr7:152375586-152426996 N . . IMPRECISE;SVTYPE=CNV;END=152426996;CN=6;SVLEN=51410 GT ./. chr7 152426996 GAIN:chr7:152426996-152448707 N . . IMPRECISE;SVTYPE=CNV;END=152448707;CN=7;SVLEN=21711 GT ./. chr7 152448707 GAIN:chr7:152448707-159334896 N . . IMPRECISE;SVTYPE=CNV;END=159334896;CN=8;SVLEN=6886189 GT ./. chr8 88547 LOH:chr8:88547-100000 N . . IMPRECISE;SVTYPE=CNV;END=100000;SVLEN=11453 GT ./. chr8 210802 LOH:chr8:210802-7200000 N . . IMPRECISE;SVTYPE=CNV;END=7200000;SVLEN=6989198 GT ./. chr8 7300000 LOH:chr8:7300000-7350000 N . . IMPRECISE;SVTYPE=CNV;END=7350000;SVLEN=50000 GT ./. chr8 8231685 LOH:chr8:8231685-12234345 N . . IMPRECISE;SVTYPE=CNV;END=12234345;SVLEN=4002660 GT ./. chr8 12284345 LOH:chr8:12284345-43965238 N . . IMPRECISE;SVTYPE=CNV;END=43965238;SVLEN=31680893 GT ./. chr8 45927265 LOH:chr8:45927265-45950000 N . . IMPRECISE;SVTYPE=CNV;END=45950000;SVLEN=22735 GT ./. chr8 45971208 LOH:chr8:45971208-49713062 N . . IMPRECISE;SVTYPE=CNV;END=49713062;SVLEN=3741854 GT ./. chr8 49713062 LOSS:chr8:49713062-49713301 N . . IMPRECISE;SVTYPE=CNV;END=49713301;CN=1;SVLEN=239 GT ./. chr8 49713301 LOSS:chr8:49713301-51512955 N . . IMPRECISE;SVTYPE=CNV;END=51512955;CN=0;SVLEN=1799654 GT ./. chr8 51513046 LOH:chr8:51513046-51513370 N . . IMPRECISE;SVTYPE=CNV;END=51513370;SVLEN=324 GT ./. chr8 51513622 LOH:chr8:51513622-51520203 N . . IMPRECISE;SVTYPE=CNV;END=51520203;SVLEN=6581 GT ./. chr8 51520203 GAINLOH:chr8:51520203-51800000 N , . . IMPRECISE;SVTYPE=CNV;END=51800000;CN=3;SVLEN=279797 GT ./. chr8 51800000 GAIN:chr8:51800000-51850000 N . . IMPRECISE;SVTYPE=CNV;END=51850000;CN=3;SVLEN=50000 GT ./. chr8 51850000 GAINLOH:chr8:51850000-53787763 N , . . IMPRECISE;SVTYPE=CNV;END=53787763;CN=3;SVLEN=1937763 GT ./. chr8 53787763 LOH:chr8:53787763-53788606 N . . IMPRECISE;SVTYPE=CNV;END=53788606;SVLEN=843 GT ./. chr8 53800000 LOH:chr8:53800000-54212003 N . . IMPRECISE;SVTYPE=CNV;END=54212003;SVLEN=412003 GT ./. chr8 54212003 GAINLOH:chr8:54212003-64223497 N , . . IMPRECISE;SVTYPE=CNV;END=64223497;CN=3;SVLEN=10011494 GT ./. chr8 64223497 GAIN:chr8:64223497-64223591 N . . IMPRECISE;SVTYPE=CNV;END=64223591;CN=3;SVLEN=94 GT ./. chr8 64223591 GAIN:chr8:64223591-64224022 N . . IMPRECISE;SVTYPE=CNV;END=64224022;CN=4;SVLEN=431 GT ./. chr8 64224022 GAINLOH:chr8:64224022-64250000 N , . . IMPRECISE;SVTYPE=CNV;END=64250000;CN=5;SVLEN=25978 GT ./. chr8 64250000 GAIN:chr8:64250000-64450000 N . . IMPRECISE;SVTYPE=CNV;END=64450000;CN=5;SVLEN=200000 GT ./. chr8 64450000 GAINLOH:chr8:64450000-64459318 N , . . IMPRECISE;SVTYPE=CNV;END=64459318;CN=5;SVLEN=9318 GT ./. chr8 64459318 GAINLOH:chr8:64459318-65005486 N , . . IMPRECISE;SVTYPE=CNV;END=65005486;CN=4;SVLEN=546168 GT ./. chr8 65005486 GAINLOH:chr8:65005486-65006193 N , . . IMPRECISE;SVTYPE=CNV;END=65006193;CN=3;SVLEN=707 GT ./. chr8 65006193 GAIN:chr8:65006193-65006194 N . . IMPRECISE;SVTYPE=CNV;END=65006194;CN=3;SVLEN=1 GT ./. chr8 65006194 GAINLOH:chr8:65006194-85664222 N , . . IMPRECISE;SVTYPE=CNV;END=85664222;CN=3;SVLEN=20658028 GT ./. chr8 85714222 GAINLOH:chr8:85714222-101350000 N , . . IMPRECISE;SVTYPE=CNV;END=101350000;CN=3;SVLEN=15635778 GT ./. chr8 101350000 GAINLOH:chr8:101350000-101363553 N , . . IMPRECISE;SVTYPE=CNV;END=101363553;CN=4;SVLEN=13553 GT ./. chr8 101363553 GAIN:chr8:101363553-101364779 N . . IMPRECISE;SVTYPE=CNV;END=101364779;CN=4;SVLEN=1226 GT ./. chr8 101364779 GAIN:chr8:101364779-101364979 N . . IMPRECISE;SVTYPE=CNV;END=101364979;CN=5;SVLEN=200 GT ./. chr8 101364979 GAIN:chr8:101364979-101551885 N . . IMPRECISE;SVTYPE=CNV;END=101551885;CN=6;SVLEN=186906 GT ./. chr8 101551885 GAINLOH:chr8:101551885-101552030 N , . . IMPRECISE;SVTYPE=CNV;END=101552030;CN=6;SVLEN=145 GT ./. chr8 101552030 GAIN:chr8:101552030-101552031 N . . IMPRECISE;SVTYPE=CNV;END=101552031;CN=4;SVLEN=1 GT ./. chr8 101552031 GAINLOH:chr8:101552031-111667221 N , . . IMPRECISE;SVTYPE=CNV;END=111667221;CN=4;SVLEN=10115190 GT ./. chr8 111667221 GAINLOH:chr8:111667221-119050000 N , . . IMPRECISE;SVTYPE=CNV;END=119050000;CN=5;SVLEN=7382779 GT ./. chr8 119050000 GAINLOH:chr8:119050000-119050257 N , . . IMPRECISE;SVTYPE=CNV;END=119050257;CN=6;SVLEN=257 GT ./. chr8 119050257 GAIN:chr8:119050257-119070702 N . . IMPRECISE;SVTYPE=CNV;END=119070702;CN=6;SVLEN=20445 GT ./. chr8 119070702 GAINLOH:chr8:119070702-119100000 N , . . IMPRECISE;SVTYPE=CNV;END=119100000;CN=6;SVLEN=29298 GT ./. chr8 119100000 GAINLOH:chr8:119100000-120816254 N , . . IMPRECISE;SVTYPE=CNV;END=120816254;CN=5;SVLEN=1716254 GT ./. chr8 120816254 GAINLOH:chr8:120816254-121400000 N , . . IMPRECISE;SVTYPE=CNV;END=121400000;CN=6;SVLEN=583746 GT ./. chr8 121400000 GAINLOH:chr8:121400000-123078706 N , . . IMPRECISE;SVTYPE=CNV;END=123078706;CN=5;SVLEN=1678706 GT ./. chr8 123078706 GAIN:chr8:123078706-123078707 N . . IMPRECISE;SVTYPE=CNV;END=123078707;CN=5;SVLEN=1 GT ./. chr8 123078707 GAINLOH:chr8:123078707-123110770 N , . . IMPRECISE;SVTYPE=CNV;END=123110770;CN=6;SVLEN=32063 GT ./. chr8 123110770 GAINLOH:chr8:123110770-123781581 N , . . IMPRECISE;SVTYPE=CNV;END=123781581;CN=7;SVLEN=670811 GT ./. chr8 123781581 GAIN:chr8:123781581-123807734 N . . IMPRECISE;SVTYPE=CNV;END=123807734;CN=7;SVLEN=26153 GT ./. chr8 123807734 GAINLOH:chr8:123807734-123938291 N , . . IMPRECISE;SVTYPE=CNV;END=123938291;CN=7;SVLEN=130557 GT ./. chr8 123938291 GAINLOH:chr8:123938291-124201685 N , . . IMPRECISE;SVTYPE=CNV;END=124201685;CN=6;SVLEN=263394 GT ./. chr8 124201685 GAINLOH:chr8:124201685-124850000 N , . . IMPRECISE;SVTYPE=CNV;END=124850000;CN=7;SVLEN=648315 GT ./. chr8 124850000 GAINLOH:chr8:124850000-124900000 N , . . IMPRECISE;SVTYPE=CNV;END=124900000;CN=8;SVLEN=50000 GT ./. chr8 124900000 GAINLOH:chr8:124900000-127316985 N , . . IMPRECISE;SVTYPE=CNV;END=127316985;CN=7;SVLEN=2416985 GT ./. chr8 127316985 GAINLOH:chr8:127316985-127475268 N , . . IMPRECISE;SVTYPE=CNV;END=127475268;CN=8;SVLEN=158283 GT ./. chr8 127475268 GAINLOH:chr8:127475268-127476954 N , . . IMPRECISE;SVTYPE=CNV;END=127476954;CN=7;SVLEN=1686 GT ./. chr8 127476954 GAIN:chr8:127476954-127477010 N . . IMPRECISE;SVTYPE=CNV;END=127477010;CN=7;SVLEN=56 GT ./. chr8 127477010 GAINLOH:chr8:127477010-132900000 N , . . IMPRECISE;SVTYPE=CNV;END=132900000;CN=7;SVLEN=5422990 GT ./. chr8 132900000 GAIN:chr8:132900000-132950000 N . . IMPRECISE;SVTYPE=CNV;END=132950000;CN=7;SVLEN=50000 GT ./. chr8 132950000 GAINLOH:chr8:132950000-133216986 N , . . IMPRECISE;SVTYPE=CNV;END=133216986;CN=7;SVLEN=266986 GT ./. chr8 133216986 GAINLOH:chr8:133216986-142000000 N , . . IMPRECISE;SVTYPE=CNV;END=142000000;CN=6;SVLEN=8783014 GT ./. chr8 142000000 GAIN:chr8:142000000-142050000 N . . IMPRECISE;SVTYPE=CNV;END=142050000;CN=6;SVLEN=50000 GT ./. chr8 142050000 GAINLOH:chr8:142050000-143650000 N , . . IMPRECISE;SVTYPE=CNV;END=143650000;CN=6;SVLEN=1600000 GT ./. chr8 143650000 GAIN:chr8:143650000-143700000 N . . IMPRECISE;SVTYPE=CNV;END=143700000;CN=6;SVLEN=50000 GT ./. chr8 143700000 GAINLOH:chr8:143700000-143750000 N , . . IMPRECISE;SVTYPE=CNV;END=143750000;CN=6;SVLEN=50000 GT ./. chr8 143750000 GAIN:chr8:143750000-143800000 N . . IMPRECISE;SVTYPE=CNV;END=143800000;CN=6;SVLEN=50000 GT ./. chr8 143800000 GAINLOH:chr8:143800000-144000000 N , . . IMPRECISE;SVTYPE=CNV;END=144000000;CN=6;SVLEN=200000 GT ./. chr8 144000000 GAIN:chr8:144000000-144050000 N . . IMPRECISE;SVTYPE=CNV;END=144050000;CN=6;SVLEN=50000 GT ./. chr8 144050000 GAINLOH:chr8:144050000-145073177 N , . . IMPRECISE;SVTYPE=CNV;END=145073177;CN=6;SVLEN=1023177 GT ./. chr8 145073177 GAIN:chr8:145073177-145076870 N . . IMPRECISE;SVTYPE=CNV;END=145076870;CN=6;SVLEN=3693 GT ./. chr8 145076870 GAIN:chr8:145076870-145078402 N . . IMPRECISE;SVTYPE=CNV;END=145078402;CN=5;SVLEN=1532 GT ./. chr9 10690 GAIN:chr9:10690-10716 N . . IMPRECISE;SVTYPE=CNV;END=10716;CN=3;SVLEN=26 GT ./. chr9 10716 GAIN:chr9:10716-13250000 N . . IMPRECISE;SVTYPE=CNV;END=13250000;CN=4;SVLEN=13239284 GT ./. chr9 13250000 GAIN:chr9:13250000-13350000 N . . IMPRECISE;SVTYPE=CNV;END=13350000;CN=5;SVLEN=100000 GT ./. chr9 13350000 GAIN:chr9:13350000-15483754 N . . IMPRECISE;SVTYPE=CNV;END=15483754;CN=4;SVLEN=2133754 GT ./. chr9 15483754 GAINLOH:chr9:15483754-15483920 N , . . IMPRECISE;SVTYPE=CNV;END=15483920;CN=4;SVLEN=166 GT ./. chr9 15483920 LOH:chr9:15483920-21772038 N . . IMPRECISE;SVTYPE=CNV;END=21772038;SVLEN=6288118 GT ./. chr9 21772038 LOSS:chr9:21772038-22009961 N . . IMPRECISE;SVTYPE=CNV;END=22009961;CN=0;SVLEN=237923 GT ./. chr9 22011659 LOH:chr9:22011659-38966219 N . . IMPRECISE;SVTYPE=CNV;END=38966219;SVLEN=16954560 GT ./. chr9 39015236 GAIN:chr9:39015236-39089977 N . . IMPRECISE;SVTYPE=CNV;END=39089977;CN=4;SVLEN=74741 GT ./. chr9 39089977 GAINLOH:chr9:39089977-39092985 N , . . IMPRECISE;SVTYPE=CNV;END=39092985;CN=4;SVLEN=3008 GT ./. chr9 39092985 GAINLOH:chr9:39092985-39093054 N , . . IMPRECISE;SVTYPE=CNV;END=39093054;CN=4;SVLEN=69 GT ./. chr9 39093054 GAINLOH:chr9:39093054-39103602 N , . . IMPRECISE;SVTYPE=CNV;END=39103602;CN=3;SVLEN=10548 GT ./. chr9 39103602 LOH:chr9:39103602-39143217 N . . IMPRECISE;SVTYPE=CNV;END=39143217;SVLEN=39615 GT ./. chr9 39143217 GAINLOH:chr9:39143217-39184041 N , . . IMPRECISE;SVTYPE=CNV;END=39184041;CN=3;SVLEN=40824 GT ./. chr9 39184041 LOH:chr9:39184041-39184068 N . . IMPRECISE;SVTYPE=CNV;END=39184068;SVLEN=27 GT ./. chr9 39184068 GAINLOH:chr9:39184068-39200000 N , . . IMPRECISE;SVTYPE=CNV;END=39200000;CN=3;SVLEN=15932 GT ./. chr9 39267373 GAIN:chr9:39267373-39297292 N . . IMPRECISE;SVTYPE=CNV;END=39297292;CN=3;SVLEN=29919 GT ./. chr9 39550000 GAIN:chr9:39550000-40350000 N . . IMPRECISE;SVTYPE=CNV;END=40350000;CN=3;SVLEN=800000 GT ./. chr9 40350000 GAIN:chr9:40350000-40400000 N . . IMPRECISE;SVTYPE=CNV;END=40400000;CN=4;SVLEN=50000 GT ./. chr9 40400000 GAIN:chr9:40400000-40529470 N . . IMPRECISE;SVTYPE=CNV;END=40529470;CN=3;SVLEN=129470 GT ./. chr9 40529480 GAIN:chr9:40529480-40537052 N . . IMPRECISE;SVTYPE=CNV;END=40537052;CN=3;SVLEN=7572 GT ./. chr9 40537134 GAIN:chr9:40537134-40547487 N . . IMPRECISE;SVTYPE=CNV;END=40547487;CN=3;SVLEN=10353 GT ./. chr9 40547497 GAIN:chr9:40547497-40561938 N . . IMPRECISE;SVTYPE=CNV;END=40561938;CN=3;SVLEN=14441 GT ./. chr9 40561948 GAIN:chr9:40561948-40562787 N . . IMPRECISE;SVTYPE=CNV;END=40562787;CN=3;SVLEN=839 GT ./. chr9 40562787 GAIN:chr9:40562787-40613300 N . . IMPRECISE;SVTYPE=CNV;END=40613300;CN=4;SVLEN=50513 GT ./. chr9 40613300 GAIN:chr9:40613300-40693190 N . . IMPRECISE;SVTYPE=CNV;END=40693190;CN=3;SVLEN=79890 GT ./. chr9 40693190 GAIN:chr9:40693190-41225986 N . . IMPRECISE;SVTYPE=CNV;END=41225986;CN=4;SVLEN=532796 GT ./. chr9 41229378 GAIN:chr9:41229378-41237752 N . . IMPRECISE;SVTYPE=CNV;END=41237752;CN=4;SVLEN=8374 GT ./. chr9 41238504 GAIN:chr9:41238504-41964731 N . . IMPRECISE;SVTYPE=CNV;END=41964731;CN=4;SVLEN=726227 GT ./. chr9 41964731 GAIN:chr9:41964731-42100000 N . . IMPRECISE;SVTYPE=CNV;END=42100000;CN=5;SVLEN=135269 GT ./. chr9 42100000 GAIN:chr9:42100000-42138756 N . . IMPRECISE;SVTYPE=CNV;END=42138756;CN=4;SVLEN=38756 GT ./. chr9 42138756 GAIN:chr9:42138756-42185288 N . . IMPRECISE;SVTYPE=CNV;END=42185288;CN=5;SVLEN=46532 GT ./. chr9 42185288 GAIN:chr9:42185288-42200000 N . . IMPRECISE;SVTYPE=CNV;END=42200000;CN=4;SVLEN=14712 GT ./. chr9 42200000 GAIN:chr9:42200000-42340995 N . . IMPRECISE;SVTYPE=CNV;END=42340995;CN=5;SVLEN=140995 GT ./. chr9 42340995 GAIN:chr9:42340995-42728717 N . . IMPRECISE;SVTYPE=CNV;END=42728717;CN=4;SVLEN=387722 GT ./. chr9 42728717 GAIN:chr9:42728717-42736028 N . . IMPRECISE;SVTYPE=CNV;END=42736028;CN=5;SVLEN=7311 GT ./. chr9 42736028 GAIN:chr9:42736028-42800000 N . . IMPRECISE;SVTYPE=CNV;END=42800000;CN=4;SVLEN=63972 GT ./. chr9 42800000 GAIN:chr9:42800000-42818985 N . . IMPRECISE;SVTYPE=CNV;END=42818985;CN=5;SVLEN=18985 GT ./. chr9 42818985 GAIN:chr9:42818985-43075837 N . . IMPRECISE;SVTYPE=CNV;END=43075837;CN=4;SVLEN=256852 GT ./. chr9 61518808 GAIN:chr9:61518808-61521301 N . . IMPRECISE;SVTYPE=CNV;END=61521301;CN=4;SVLEN=2493 GT ./. chr9 61521301 GAIN:chr9:61521301-61521754 N . . IMPRECISE;SVTYPE=CNV;END=61521754;CN=4;SVLEN=453 GT ./. chr9 61521754 GAIN:chr9:61521754-61553397 N . . IMPRECISE;SVTYPE=CNV;END=61553397;CN=3;SVLEN=31643 GT ./. chr9 61553397 GAIN:chr9:61553397-61735368 N . . IMPRECISE;SVTYPE=CNV;END=61735368;CN=4;SVLEN=181971 GT ./. chr9 61785368 GAIN:chr9:61785368-61900000 N . . IMPRECISE;SVTYPE=CNV;END=61900000;CN=4;SVLEN=114632 GT ./. chr9 61900000 GAIN:chr9:61900000-62149738 N . . IMPRECISE;SVTYPE=CNV;END=62149738;CN=3;SVLEN=249738 GT ./. chr9 62249738 GAIN:chr9:62249738-62748832 N . . IMPRECISE;SVTYPE=CNV;END=62748832;CN=3;SVLEN=499094 GT ./. chr9 62798832 GAIN:chr9:62798832-62958371 N . . IMPRECISE;SVTYPE=CNV;END=62958371;CN=3;SVLEN=159539 GT ./. chr9 63008371 GAIN:chr9:63008371-63150000 N . . IMPRECISE;SVTYPE=CNV;END=63150000;CN=3;SVLEN=141629 GT ./. chr9 63150000 GAIN:chr9:63150000-63202862 N . . IMPRECISE;SVTYPE=CNV;END=63202862;CN=4;SVLEN=52862 GT ./. chr9 63252862 GAIN:chr9:63252862-63300000 N . . IMPRECISE;SVTYPE=CNV;END=63300000;CN=3;SVLEN=47138 GT ./. chr9 63300000 GAIN:chr9:63300000-63350000 N . . IMPRECISE;SVTYPE=CNV;END=63350000;CN=4;SVLEN=50000 GT ./. chr9 63350000 GAIN:chr9:63350000-63492264 N . . IMPRECISE;SVTYPE=CNV;END=63492264;CN=3;SVLEN=142264 GT ./. chr9 63542264 GAIN:chr9:63542264-63544571 N . . IMPRECISE;SVTYPE=CNV;END=63544571;CN=3;SVLEN=2307 GT ./. chr9 63544571 GAIN:chr9:63544571-63545456 N . . IMPRECISE;SVTYPE=CNV;END=63545456;CN=4;SVLEN=885 GT ./. chr9 63545456 GAIN:chr9:63545456-63546157 N . . IMPRECISE;SVTYPE=CNV;END=63546157;CN=3;SVLEN=701 GT ./. chr9 63546157 GAIN:chr9:63546157-63918447 N . . IMPRECISE;SVTYPE=CNV;END=63918447;CN=4;SVLEN=372290 GT ./. chr9 63968447 GAIN:chr9:63968447-64135013 N . . IMPRECISE;SVTYPE=CNV;END=64135013;CN=3;SVLEN=166566 GT ./. chr9 64185013 GAIN:chr9:64185013-64215162 N . . IMPRECISE;SVTYPE=CNV;END=64215162;CN=3;SVLEN=30149 GT ./. chr9 64315162 GAIN:chr9:64315162-64316012 N . . IMPRECISE;SVTYPE=CNV;END=64316012;CN=4;SVLEN=850 GT ./. chr9 64316012 GAIN:chr9:64316012-64998124 N . . IMPRECISE;SVTYPE=CNV;END=64998124;CN=4;SVLEN=682112 GT ./. chr9 65048124 GAIN:chr9:65048124-65080082 N . . IMPRECISE;SVTYPE=CNV;END=65080082;CN=4;SVLEN=31958 GT ./. chr9 65130082 GAIN:chr9:65130082-65325123 N . . IMPRECISE;SVTYPE=CNV;END=65325123;CN=3;SVLEN=195041 GT ./. chr9 65375123 GAIN:chr9:65375123-65523668 N . . IMPRECISE;SVTYPE=CNV;END=65523668;CN=3;SVLEN=148545 GT ./. chr9 65537278 GAIN:chr9:65537278-65595191 N . . IMPRECISE;SVTYPE=CNV;END=65595191;CN=3;SVLEN=57913 GT ./. chr9 65650000 GAIN:chr9:65650000-66391387 N . . IMPRECISE;SVTYPE=CNV;END=66391387;CN=3;SVLEN=741387 GT ./. chr9 66591387 GAIN:chr9:66591387-66774198 N . . IMPRECISE;SVTYPE=CNV;END=66774198;CN=3;SVLEN=182811 GT ./. chr9 66774198 GAIN:chr9:66774198-66800000 N . . IMPRECISE;SVTYPE=CNV;END=66800000;CN=4;SVLEN=25802 GT ./. chr9 66800000 GAIN:chr9:66800000-67050000 N . . IMPRECISE;SVTYPE=CNV;END=67050000;CN=3;SVLEN=250000 GT ./. chr9 67050000 GAIN:chr9:67050000-67250000 N . . IMPRECISE;SVTYPE=CNV;END=67250000;CN=4;SVLEN=200000 GT ./. chr9 67250000 GAIN:chr9:67250000-67300000 N . . IMPRECISE;SVTYPE=CNV;END=67300000;CN=6;SVLEN=50000 GT ./. chr9 67300000 GAIN:chr9:67300000-67920552 N . . IMPRECISE;SVTYPE=CNV;END=67920552;CN=4;SVLEN=620552 GT ./. chr9 68220552 GAIN:chr9:68220552-68239329 N . . IMPRECISE;SVTYPE=CNV;END=68239329;CN=3;SVLEN=18777 GT ./. chr9 68239329 GAIN:chr9:68239329-68242756 N . . IMPRECISE;SVTYPE=CNV;END=68242756;CN=4;SVLEN=3427 GT ./. chr9 68242756 GAIN:chr9:68242756-68250000 N . . IMPRECISE;SVTYPE=CNV;END=68250000;CN=5;SVLEN=7244 GT ./. chr9 68250000 GAIN:chr9:68250000-80800000 N . . IMPRECISE;SVTYPE=CNV;END=80800000;CN=4;SVLEN=12550000 GT ./. chr9 80800000 GAIN:chr9:80800000-80850000 N . . IMPRECISE;SVTYPE=CNV;END=80850000;CN=3;SVLEN=50000 GT ./. chr9 80850000 GAIN:chr9:80850000-80900000 N . . IMPRECISE;SVTYPE=CNV;END=80900000;CN=4;SVLEN=50000 GT ./. chr9 80900000 GAIN:chr9:80900000-81300000 N . . IMPRECISE;SVTYPE=CNV;END=81300000;CN=3;SVLEN=400000 GT ./. chr9 81300000 GAIN:chr9:81300000-83000000 N . . IMPRECISE;SVTYPE=CNV;END=83000000;CN=4;SVLEN=1700000 GT ./. chr9 83000000 GAIN:chr9:83000000-83050000 N . . IMPRECISE;SVTYPE=CNV;END=83050000;CN=3;SVLEN=50000 GT ./. chr9 83050000 GAIN:chr9:83050000-85200000 N . . IMPRECISE;SVTYPE=CNV;END=85200000;CN=4;SVLEN=2150000 GT ./. chr9 85200000 GAIN:chr9:85200000-85550000 N . . IMPRECISE;SVTYPE=CNV;END=85550000;CN=3;SVLEN=350000 GT ./. chr9 85550000 GAIN:chr9:85550000-91200000 N . . IMPRECISE;SVTYPE=CNV;END=91200000;CN=4;SVLEN=5650000 GT ./. chr9 91200000 GAIN:chr9:91200000-91250000 N . . IMPRECISE;SVTYPE=CNV;END=91250000;CN=3;SVLEN=50000 GT ./. chr9 91250000 GAIN:chr9:91250000-95150000 N . . IMPRECISE;SVTYPE=CNV;END=95150000;CN=4;SVLEN=3900000 GT ./. chr9 95150000 GAIN:chr9:95150000-101650000 N . . IMPRECISE;SVTYPE=CNV;END=101650000;CN=3;SVLEN=6500000 GT ./. chr9 101650000 GAIN:chr9:101650000-101800000 N . . IMPRECISE;SVTYPE=CNV;END=101800000;CN=4;SVLEN=150000 GT ./. chr9 101800000 GAIN:chr9:101800000-102300000 N . . IMPRECISE;SVTYPE=CNV;END=102300000;CN=3;SVLEN=500000 GT ./. chr9 102300000 GAIN:chr9:102300000-102350000 N . . IMPRECISE;SVTYPE=CNV;END=102350000;CN=4;SVLEN=50000 GT ./. chr9 102350000 GAIN:chr9:102350000-102500000 N . . IMPRECISE;SVTYPE=CNV;END=102500000;CN=3;SVLEN=150000 GT ./. chr9 102500000 GAIN:chr9:102500000-102550000 N . . IMPRECISE;SVTYPE=CNV;END=102550000;CN=4;SVLEN=50000 GT ./. chr9 102550000 GAIN:chr9:102550000-102700000 N . . IMPRECISE;SVTYPE=CNV;END=102700000;CN=3;SVLEN=150000 GT ./. chr9 102700000 GAIN:chr9:102700000-102750000 N . . IMPRECISE;SVTYPE=CNV;END=102750000;CN=4;SVLEN=50000 GT ./. chr9 102750000 GAIN:chr9:102750000-102800000 N . . IMPRECISE;SVTYPE=CNV;END=102800000;CN=3;SVLEN=50000 GT ./. chr9 102800000 GAIN:chr9:102800000-102900000 N . . IMPRECISE;SVTYPE=CNV;END=102900000;CN=4;SVLEN=100000 GT ./. chr9 102900000 GAIN:chr9:102900000-103350000 N . . IMPRECISE;SVTYPE=CNV;END=103350000;CN=3;SVLEN=450000 GT ./. chr9 103350000 GAIN:chr9:103350000-104200000 N . . IMPRECISE;SVTYPE=CNV;END=104200000;CN=4;SVLEN=850000 GT ./. chr9 104200000 GAIN:chr9:104200000-107162033 N . . IMPRECISE;SVTYPE=CNV;END=107162033;CN=3;SVLEN=2962033 GT ./. chr9 107162885 LOH:chr9:107162885-126192002 N . . IMPRECISE;SVTYPE=CNV;END=126192002;SVLEN=19029117 GT ./. chr9 126192002 GAINLOH:chr9:126192002-127050000 N , . . IMPRECISE;SVTYPE=CNV;END=127050000;CN=3;SVLEN=857998 GT ./. chr9 127050000 LOH:chr9:127050000-127100000 N . . IMPRECISE;SVTYPE=CNV;END=127100000;SVLEN=50000 GT ./. chr9 127100000 GAINLOH:chr9:127100000-127454672 N , . . IMPRECISE;SVTYPE=CNV;END=127454672;CN=3;SVLEN=354672 GT ./. chr9 127454672 LOH:chr9:127454672-127455182 N . . IMPRECISE;SVTYPE=CNV;END=127455182;SVLEN=510 GT ./. chr9 127455182 GAINLOH:chr9:127455182-127696731 N , . . IMPRECISE;SVTYPE=CNV;END=127696731;CN=3;SVLEN=241549 GT ./. chr9 127696731 LOH:chr9:127696731-127696977 N . . IMPRECISE;SVTYPE=CNV;END=127696977;SVLEN=246 GT ./. chr9 127696977 GAINLOH:chr9:127696977-127700000 N , . . IMPRECISE;SVTYPE=CNV;END=127700000;CN=3;SVLEN=3023 GT ./. chr9 127700000 LOH:chr9:127700000-128528620 N . . IMPRECISE;SVTYPE=CNV;END=128528620;SVLEN=828620 GT ./. chr9 128528620 GAINLOH:chr9:128528620-128622402 N , . . IMPRECISE;SVTYPE=CNV;END=128622402;CN=3;SVLEN=93782 GT ./. chr9 128622402 LOH:chr9:128622402-128952004 N . . IMPRECISE;SVTYPE=CNV;END=128952004;SVLEN=329602 GT ./. chr9 128952004 GAINLOH:chr9:128952004-128965681 N , . . IMPRECISE;SVTYPE=CNV;END=128965681;CN=3;SVLEN=13677 GT ./. chr9 128965681 LOH:chr9:128965681-128966046 N . . IMPRECISE;SVTYPE=CNV;END=128966046;SVLEN=365 GT ./. chr9 128966046 GAINLOH:chr9:128966046-129000000 N , . . IMPRECISE;SVTYPE=CNV;END=129000000;CN=3;SVLEN=33954 GT ./. chr9 129000000 GAIN:chr9:129000000-129424583 N . . IMPRECISE;SVTYPE=CNV;END=129424583;CN=3;SVLEN=424583 GT ./. chr9 129424583 GAIN:chr9:129424583-132000000 N . . IMPRECISE;SVTYPE=CNV;END=132000000;CN=4;SVLEN=2575417 GT ./. chr9 132000000 GAIN:chr9:132000000-132050000 N . . IMPRECISE;SVTYPE=CNV;END=132050000;CN=3;SVLEN=50000 GT ./. chr9 132050000 GAIN:chr9:132050000-132438142 N . . IMPRECISE;SVTYPE=CNV;END=132438142;CN=4;SVLEN=388142 GT ./. chr9 132438142 GAIN:chr9:132438142-132438293 N . . IMPRECISE;SVTYPE=CNV;END=132438293;CN=3;SVLEN=151 GT ./. chr9 132438293 GAIN:chr9:132438293-132944046 N . . IMPRECISE;SVTYPE=CNV;END=132944046;CN=4;SVLEN=505753 GT ./. chr9 132944046 GAIN:chr9:132944046-134183092 N . . IMPRECISE;SVTYPE=CNV;END=134183092;CN=3;SVLEN=1239046 GT ./. chr9 134185536 GAIN:chr9:134185536-134473955 N . . IMPRECISE;SVTYPE=CNV;END=134473955;CN=3;SVLEN=288419 GT ./. chr9 134473955 GAIN:chr9:134473955-138241142 N . . IMPRECISE;SVTYPE=CNV;END=138241142;CN=4;SVLEN=3767187 GT ./. chr9 138241142 GAIN:chr9:138241142-138250000 N . . IMPRECISE;SVTYPE=CNV;END=138250000;CN=3;SVLEN=8858 GT ./.