dissectHMMER

dissectHMMER results

Overview of Sequence Annotation

Domain(s) to sequence segment[29,379]
Domain name?                      PDB?     Length?   Seq range?   Score[FC/R]?   FPR[FC/R]?   Score[FC]?   FPR[FC]?   Domaincoverage?   Total FPR?   Hits'classification?   
PF05684.7_DUF819_seed         ?   -        400       10,388       1              0.00         1            0.00       1                 0            TP,TP               
PF07690.11_MFS_1_seed         ?   2CFP|A   793       13,382       0.845          0.00         0.815        0.00       1                 0            TP,TP               
PF03706.8_UPF0104_seed        ?   -        626       97,383       0.615          0.01         0.63         0.00       1                 0.01         TP,FN               
PF00375.13_SDF_seed           ?   3V8G|A   618       7,388        0.45           0.09         0.74         0.00       1                 0.09         TP,TP               
PF00999.16_Na_H_Exchanger_seed?   4BWZ|A   593       10,387       0.415          0.15         0.49         0.03       1                 0.18         TP                  
PF13347.1_MFS_2_seed          ?   4LDS|A   847       36,382       0.415          0.15         0.49         0.03       1                 0.18         TP                  
PF07155.7_ECF-ribofla_trS_seed?   4HZU|S   196       251,387      0.375          0.23         0.485        0.04       1                 0.27         TP                  
PF03547.13_Mem_trans_seed     ?   -        746       29,379       0.36           0.25         0.485        0.04       1                 0.29         TP                  
PF07884.9_VKOR_seed           ?   3KP9|A   174       250,379      0.395          0.18         0.435        0.13       1                 0.31         TP                  
PF00083.19_Sugar_tr_seed      ?   4GC0|A   605       6,385        0.225          0.50         0.485        0.04       1                 0.54         TP                  
PF00115.15_COX1_seed          ?   1V55|A   591       22,381       0.12           0.70         0.475        0.06       1                 0.76         TP                  
PF09847.4_DUF2074_seed        ?   -        504       1,388        0.1            0.75         0.42         0.15       1                 0.9          TP                  
PF07556.6_DUF1538_seed        ?   -        262       222,377      0.07           0.83         0.45         0.10       1                 0.93         TP                  
PF03611.9_EIIC-GAT_seed       ?   -        642       7,379        0.035          0.90         0.485        0.04       1                 0.94         TP                  
PF03169.10_OPT_seed           ?   -        1010      3,388        0.05           0.88         0.45         0.10       1                 0.98         TP                  
PF02028.12_BCCT_seed          ?   2WSW|A   722       7,330        0.005          1.00         0.5          0.01       1                 1.01         TP                  
PF13303.1_PTS_EIIC_2_seed     ?   -        464       195,387      0.035          0.90         0.435        0.13       1                 1.03         TP                  
PF03806.8_ABG_transport_seed  ?   -        518       25,386       0              1.00         0.475        0.06       1                 1.06         TP                  
PF01654.12_Bac_Ubq_Cox_seed   ?   -        809       6,325        0.005          1.00         0.44         0.11       1                 1.11         TP                  
PF01970.11_TctA_seed          ?   -        570       97,385       0.015          0.98         0.435        0.13       1                 1.11         TP                  
PF11299.3_DUF3100_seed        ?   -        252       230,385      0.005          1.00         0.445        0.11       1                 1.11         TP                  


Alignments

PF05684.7_DUF819_seed:
E:5.30e-244[Original]   E:4.37e-35[Fold-critical]   E:5.72e-15[Remnant]   Ratio[FC/R]:7.64e-21   Classification:TP
 TM       -------------------------cccccccccccccccccccccc----------------------------------------ccccccccccccccccccccccc------------------------------------------cccccccccccccccccccccccc----------------------------------------ccccccccccccccccccc----------------------cccccccccccccccccc---------------cccccccccccccccccccc-----cccccccccccccccccccccc-------cccccccccccccccccccc------cccccccccccccccccccccccc------   TMSOC
STRUCT   1111111111111111111111H11HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHCCCCH1HHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHH---------------HHHHHHHHHHHHHHCCCCCHHHHHH1HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHCC   PredictedSECSTR
MODEL    GFLAATAALGLWLSAREEKTKWKFFSVVPAALLIYLLAMFFNTLGLIGDSESESPAYSVVRNFLLPAAIPLLLLRIDLRKIIKLGGKLLLIFLIASVSTVLGFILAFLLMKSFHPASLGPDTWKIAAALAGSWIGGSANMVAMQEALAVPASVFSAALVVDNVIYAVWFAVLFALASLKRSIDAKTKADTSKLKALSEDAAKEEAEEKRNPIALVDIIFLIGVSLAIVAVATVLGEYLKSIFKVNLLTGIQLELDTGGTLTVVTATIVGLLLAFTRFFELLAPGSEEIGTVLLYVFFAVIGSTADLWSILTTAPSIFLFGLIIIAVHLAVLLGLGKLFRVDLFLLLLASNANIGGPTSAPVMATAKGWRSLVPVGVLMGVLGYAIGTFLGILVGVILSKL   HMMER2[PF05684.7_DUF819_seed]
QUERY    SILIGMTALIVWA---EYKIGGKFFKYVPAIVLIYLGAAFMNTFGLFGDSESLSNTSYGVRNALLPAMILLMLLQCDLRKIIKLGPKLLITYFVAAFSIVLGFTLTYLVMQSF----FLDDTWRAFSALAGSWTGGSANMVALQDILAVPETIFGYALIMDTINYSFWVMVMFWLVPFERMFNRWTKADTSKLESMSQEIAATVTDEKREPTTFVHMIGLLGFSLFIAALATVIGENLP-----QIGTGI-----NAMTWTILIVSIVGLLLALTPFASI--PGSMDIGRVMLYTIVAIIASGADFSSIGE-IPVYIIAGFMVLLFHGLILFGFAKLFKLDLFTLGVASLANIGGMVSAPVLAGAFN-RALIPVGVIMALIGGFMGTWFGVLTAEILSRL   Q9K8K1|Unknown|Q9K8K1_BACHD[10 388]

E:3.50e-162[Original]   E:1.03e-143[Fold-critical]   E:1.17e-22[Remnant]   Ratio[FC/R]:8.80e-122   Classification:TP
 TM       -------------------------cccccccccccccccccccccc----------------------------------------ccccccccccccccccccccccc------------------------------------------cccccccccccccccccccccccc----------------------------------------ccccccccccccccccccc----------------------cccccccccccccccccc---------------cccccccccccccccccccc-----cccccccccccccccccccccc-------cccccccccccccccccccc------cccccccccccccccccccccccc------   TMSOC
STRUCT   1111111111111111111111H11HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHCCCCH1HHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHH---------------HHHHHHHHHHHHHHCCCCCHHHHHH1HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHCC   PredictedSECSTR
MODEL    ALLAALAALVLWLSAREEKTKVKFFAVVSALLLIYLLALVASTLGLIGDSESESKAYSVVRNVLLPAAILLLLLRIDLRKIIKLGGKLLLIFLIASVSIVLGTVLAFLLLKSLHPASLGPDTWKIAAALAGSYIGGSVNMVALQEALAVDASVLSAALVVDNVIYAVWFAVLLLLASLKRSIDAKTKADTSKLEALAEEAAKEEAEEKRKKIALVDLIVLIGVSLAIVAVAAVLGEYLKSIFKVNLLTGIQLELDSGVTLTVVLATIVGLLLAFTRFFELLAPGAEELGTVLLYVLVAVIGATADLLSILETAPLILLFGLIIIAVHLVVLLGLGKLFRVDLELLLLASNANIGGPTSAPVVATAKGWRSLVAVGVLLGVLGVAIGTFLGILVGEILSKL   HMMER3[PF05684.7_DUF819_seed]
QUERY    SILIGMTALIVWA---EYKIGGKFFKYVPAIVLIYLGAAFMNTFGLFGDSESLSNTSYGVRNALLPAMILLMLLQCDLRKIIKLGPKLLITYFVAAFSIVLGFTLTYLVMQSF----FLDDTWRAFSALAGSWTGGSANMVALQDILAVPETIFGYALIMDTINYSFWVMVMFWLVPFERMFNRWTKADTSKLESMSQEIAATVTDEKREPTTFVHMIGLLGFSLFIAALATVIGENLP-----QIGTGI-----NAMTWTILIVSIVGLLLALTPFASI--PGSMDIGRVMLYTIVAIIASGADFSSIGE-IPVYIIAGFMVLLFHGLILFGFAKLFKLDLFTLGVASLANIGGMVSAPVLAGAFN-RALIPVGVIMALIGGFMGTWFGVLTAEILSRL   Q9K8K1|Unknown|Q9K8K1_BACHD[10 388]


PF07690.11_MFS_1_seed:
E:7.72e-02[Original]   E:4.87e-04[Fold-critical]   E:6.97e-01[Remnant]   Ratio[FC/R]:6.99e-04   Classification:TP
 TM       -----------------------------------------------------------------------------------------------------------------------------------------------------------ccc----cccccccccccccccccccccccccccc----------------------cccccccccccccccccccc-----ccccccccccc------cccc------cccccc---ccccccccccccccccccc----------------cc--ccccc---cccccccccccccccc----cccccc--------------cccc----cccccccccccccccccccccccc---------------------------------------------------------------------------------------------------------------------------------------------cccccccccc----cccccccccccccccccc------------------------------------------ccccccccccccccccccccccccccccc----------------------cccccccccccccccccccccc-----------------ccccccccc--------cccccccccccccccccccccccccccccc-----------------------------ccccccccccccccccccc-   TMSOC
STRUCT   HHHHHHHHHHHHHH-------------HHHHH-------H--HH--------------HTT------------------------------------------SS----------------------------------------STTHH-----HHH----HHHH---HHH--HH---HHHHTTH-HHH--HT----T-S-----?--III-IIHHHHHHHHHH-HHHHH-----------H---HH------HHHH------HHHHHH---HHHHHH-HHHHHHHHHHHHHHHHT-S-----S??SHH--HHHHH---HHHHHH-HHH-HHHHH----HSS-?HHH------------HHHH----HHHHHHHHHHH---H?--????SS------------------------------???STTT??-------------------------------------------------???TTT?---------STHHHHHH-------HH--------------------HHHHHHHHHH-----HHHHHH----HHHH?S?------S--------SHHHHHHHHH------------------HHHHHHHTHHHHHHHHHH-----HHHTTT-TH-------HHH--------HHHHHHHHHHHTSSSSSHHHHH-------------------HHHHHH-----------HHHHHHHHHHH-HHHHT----SSTTHHHHHTHH----H----------HHHH-----HHHHHHH-HHHH-HHHH??S   PDB/DSSP
MODEL    LLLAAFLAALGRSLNVDTLGHGKKVSVLGPALLKMVMPRPLDLLVQKAALSRETELESAEDGNPGSNRSALTNLENMEMTLVNASGSLTDNVENMEHKSADVLLGISVSSLESISYSDESISDNQCYVLDEALDTSLELETTNLAISPTEDVKNYIGLIEAQLLTALISFSLGTGYILAALAQPLALGRLKESDKTETRKFRLGKLGISRRRLVLLLGLLLFALGSLLLLLGLALLFAFLTGAASAASLALAVVLWALEDVLVGLLVLRVLLVLQGLGASGALFPAAAALIADWFPPGEKKEGKERGRALFSGIVSAGNLGFGLGAAALGAPLLGGLIKRLLAASLFGVGIAILTLVLLGWRAASVLYFLILAILALLAALLAVFALALLLLIAEKFGDESVRIDWIGAALVVAGLTKVFPEPRPPPESKRKKPAEELGLLALLSLALVLGLSNNGGKEKAILLVLAAAEGALLGLGEGGAPAPLLPLAVLLALGAWKALLRDPTALAPVLVLLRLRLWKVRRFELTKDPLLALLLLLALLLFKAIFAGFAFFASFGALLTLLPLESADAEYSTDTRLVALQEVLGLSPAGVVVAYLVQLAEAKRGQGLLLAGLLLGLAALLGAIGLVSRLLLGRLSLDRLTIYRGVLGRGGLQEARRRLLLGLLLLLLAALGLALLSLTSSHLNLLTNGVEATEDPESSLWLLVLLEVVELKLVLALLLGAALLGFVGFGLVQSVLFPALNALASDLAAKAAPKYELEHPTFFEERGYKKKTTASGLYNGTAGSNLGGALGP   HMMER2[PF07690.11_MFS_1_seed]
QUERY    IGMTALIVWAEYKI-------GGKFFKYVPAI-------VLIYL--------------GAA------------------------------------------FM----------------------------------------NTFGL-----FGDSESLSNTS---YGVRNAL---LPAMILL-MLL--------Q-C-----D--LRK-IIKLGPKLLITY--FVAA-------F---S---IV------LG-F------TLTYLV---MQSFFL-------------------D-----DTWRAF--SALAG---SWTGGS-ANM-VALQD----ILA-----V-----------PETI----FGYALIMDTINYSFWV--MVMFWL----------------------------VPFERMFNRWTKADTSKLESMSQEIAATV--------------------------TDEKREPTTFVHMIGLLGFSLFIAALATV----IGENLPQIGTG------------INAMTWTILIVS-------IVGL----LLALTPF-------------------ASIP-------------------G-SMDIGRVMLYTIVAIIA-----SGADFS-SI---------G------EIPVYIIAGFMVLLFHGLILFGFA---------------KLFKLDLFTL----------GVASL----ANI-GGMVS----APVLAGAFNRAL---------------IPVG-----VIMALIGGFMGT-WFGVLTA   Q9K8K1|Unknown|Q9K8K1_BACHD[13 382]

E:9.98e-05[Original]   E:6.49e-12[Fold-critical]   E:1.48e+04[Remnant]   Ratio[FC/R]:4.39e-16   Classification:TP
 TM       -----------------------------------------------------------------------------------------------------------------------------------------------------------ccc----cccccccccccccccccccccccccccc----------------------cccccccccccccccccccc-----ccccccccccc------cccc------cccccc---ccccccccccccccccccc----------------cc--ccccc---cccccccccccccccc----cccccc--------------cccc----cccccccccccccccccccccccc---------------------------------------------------------------------------------------------------------------------------------------------cccccccccc----cccccccccccccccccc------------------------------------------ccccccccccccccccccccccccccccc----------------------cccccccccccccccccccccc-----------------ccccccccc--------cccccccccccccccccccccccccccccc-----------------------------ccccccccccccccccccc-   TMSOC
STRUCT   HHHHHHHHHHHHHH-------------HHHHH-------H--HH--------------HTT------------------------------------------SS----------------------------------------STTHH-----HHH----HHHH---HHH--HH---HHHHTTH-HHH--HT----T-S-----?--III-IIHHHHHHHHHH-HHHHH-----------H---HH------HHHH------HHHHHH---HHHHHH-HHHHHHHHHHHHHHHHT-S-----S??SHH--HHHHH---HHHHHH-HHH-HHHHH----HSS-?HHH------------HHHH----HHHHHHHHHHH---H?--????SS------------------------------???STTT??-------------------------------------------------???TTT?---------STHHHHHH-------HH--------------------HHHHHHHHHH-----HHHHHH----HHHH?S?------S--------SHHHHHHHHH------------------HHHHHHHTHHHHHHHHHH-----HHHTTT-TH-------HHH--------HHHHHHHHHHHTSSSSSHHHHH-------------------HHHHHH-----------HHHHHHHHHHH-HHHHT----SSTTHHHHHTHH----H----------HHHH-----HHHHHHH-HHHH-HHHH??S   PDB/DSSP
MODEL    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFRLGKLGISRRRIVLLLGLLLFALGALLLLLILALLVAFLELAASASSLVSKEFLWALTDVLVGLLVLRVLAVLQGLGASGALFPAGAALIADWFPPGEKKEGKERGRAINSGLLSAGNLGFSLGAAILGAPLLGGLMKLLLATSSLGNGISILGLNILGWRAVSVSVFYILAIVSLLALLVFVACLFLLLLLPESHGDESVRIDWIGAALVVAGLCSFMLAPEEPPERKRVSPKEEEKILLALVQILVEGAAINDRSEKIPSDVRQALEQALLGLGKGTGPAPLVPLAVNVGTGAWKALLKDPKALAPVKVLLRLRLWEVREKELTKDKLLALILLIALLLFKVIFAFFGFSGSFLALLTLLPLESIDSAYSTDTRLVFLQEVLGLSPSGVTVAYLEQLQESKRGQGLLLAGLLLALAALVGAILVVMALLAGRLSEDRARCCTPQLGRDQLNEVRRRLLLALLLLILAALGLALLAVTSSHLQLLTNGSEANEDDSSAVLLLVLTEVTEVVLSVVLVLSLAVIGFAGLGFVRSLLFPSLLALASDLAAKAAPPYELEHPTFFEERGMKRETTASGLFNVTAGSxxxxxxxx   HMMER3[PF07690.11_MFS_1_seed]
QUERY    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxY-----G--VRN-ALLPAMILLMLL--QCDL------------RKIIK------LG-P-----KLLITYF---VAAFSI-VLGFTLTYLVMQSFFLD-------DTWRAF--SALAG---SWTGGS-ANM-VALQD----ILA--VPE----------TIFGYA----LIMDTINYSFW----V--MVMFWL----------------------------VPFERMFNRWTKADTSKLESMSQEIA---------------------------------------AT---------VTDEKREP-----TTF----------------------VHMIGLLGF-----SLFIAALATVIGENLPQ------I-----------GTGIN------AMTWTIL------IVSIVGLLLALTPFASIPG---SMDIGRVM-LYTIVAIIASGADFSSIGEIPVYIIAGFMVLLFHGLILFGFA---------------KLFKLDLFTL-----------GVAS----LAN-IGGMV----SAPVLAGAFNRA--L------------IPVG-----VIMALIGGFMGTxxxxxxxx   Q9K8K1|Unknown|Q9K8K1_BACHD[64 375]


PF03706.8_UPF0104_seed:
E:5.15e-02[Original]   E:7.87e-04[Fold-critical]   E:2.09e-02[Remnant]   Ratio[FC/R]:3.77e-02   Classification:TP
 TM       -------------------------------------------------------------ccccc--------ccccccccccccccccc------------------------------------------cccccccc---------------------------------------------------c----cccccccc----ccc---cccccccccc-----------------------------------------------------ccc--------cccccccccc----cccccccccccccc---------------------cccc---------------ccccccccccccccccc-------------------------------------------------------------------------------------------ccccccccccccccccccccccccccc--------------cccccccccccccccc---cccc----cccccc--ccc------ccc-----cccccccccc-----ccc-------cccccccccccccccc--ccc-------------------c--   TMSOC
STRUCT   CCHHHH111111HHHHHCCHHHHH-----------------------------HHHH111CCCHHH11111111HHHH11HH1111HHHHH------------------------------------------HHH11HHHH-----------HHHHHHH-------------------------111HHHH1H111HHHHHHHH1111HHH111H111111111-----------1HHHHHHHHH---------------1HCCCCH11111HHHHHH1H11111111HHHHHHHHHH1111HHHHHHHHHHHHH1-----------1HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH11111111111111111111111111HHHHHHHHHHHHHHHHHHHHH1HHHHHHHH11-------------------111HHCHHHH111HHHHHHHHHHHHHHHHH1HHHHHHHHH-------------HHHHHHHHHHHHHHHH1111H---------------HHHHHHHHHHHH11111HCCCCHHHH11111HHH11111111HHHHHHHHHHHHH111111H--------------------CC   PredictedSECSTR
MODEL    SLALLVAFGTELLLLRGLDLSELATEKLAKDSVEDQAVVLESSLDDKKRLVEKAALRTIISANPWWKNIIKFSLLLLAALLLALLGLALLSLFYNFYNSSFSDGSTTRIFEKFYEFFFKPRKNRLVFLGVFGHLLLVLRALRRAYGPGAGRVVWRLLLRAVARSAAKFLGVSEERAHPAKAAAERRLSFRRLFLVLNRAYLIGYFRYAAVNNFQNVGTPAGGRLGGDGIKASYHSYGEVVRAYLLAKGNLTETTELDKELSRREGVPLNEPKLSKALASVVFDTPSRQVVLERLLLLDLAEQGLALLLLALLLLLLLFDDFVTFLLQHPLLLLGLAGLSLLLVGGSIIPSLKKWTEVLLGLLLLALLLLLLLLLRLSPKATRRLIAAAVRLLILALGLLRLLRKRRLLLRLERLRERLARLLERRLREGLRLLFLKTEAGAAGILSVQEAKDVEQLLRSPKRLPRRLLALLLLSLLIWLLEALFALYLLLRALGTLDVNLDQEKPLSLLVVLLALPLATLAGSANGLLPSFFIIITPGGANLGVREAALVLLLANFRPILFGVPAAAAAEGIYLAALDIFIKDTALLWRLITFLLPLLLAGLALAIRHCPRIFNPDRYRSRSNLGL   HMMER2[PF03706.8_UPF0104_seed]
QUERY    GFTLTY------LVMQSFFLDDTW-----------------------------RAFS---ALAGSW--------TGGS--------ANMVA--------------------------------------------------------------LQDILAV-------------------------PETIFGYAL---IMDTIN------YSF---W-VM--VMFW------------LVPFERMFN-------RWTKADTSKLESMSQ-----EIAATV----------TDEK--REPT----TFVHMIGLLGFSL----FIAALATVIGENLPQIGTGINA---------------MTWTILIVSIVGLLLALTP-----------------------------FASIPGSMDIGRVMLYTIVAIIASGAD------------------------FSSIGEI---PVYI-IAGFMVLLFHGL-ILFGFAKLFK------------LDLFTLGVASLANIGG----MVS------APVL--AGAFNRAL---------------IPVG-----VIM--------ALIGGFMGTWFGV------L-------------------TAE   Q9K8K1|Unknown|Q9K8K1_BACHD[108 383]

E:1.07e-03[Original]   E:6.37e-08[Fold-critical]   E:1.48e+04[Remnant]   Ratio[FC/R]:4.30e-12   Classification:FN
 TM       -------------------------------------------------------------ccccc--------ccccccccccccccccc------------------------------------------cccccccc---------------------------------------------------c----cccccccc----ccc---cccccccccc-----------------------------------------------------ccc--------cccccccccc----cccccccccccccc---------------------cccc---------------ccccccccccccccccc-------------------------------------------------------------------------------------------ccccccccccccccccccccccccccc--------------cccccccccccccccc---cccc----cccccc--ccc------ccc-----cccccccccc-----ccc-------cccccccccccccccc--ccc-------------------c--   TMSOC
STRUCT   CCHHHH111111HHHHHCCHHHHH-----------------------------HHHH111CCCHHH11111111HHHH11HH1111HHHHH------------------------------------------HHH11HHHH-----------HHHHHHH-------------------------111HHHH1H111HHHHHHHH1111HHH111H111111111-----------1HHHHHHHHH---------------1HCCCCH11111HHHHHH1H11111111HHHHHHHHHH1111HHHHHHHHHHHHH1-----------1HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH11111111111111111111111111HHHHHHHHHHHHHHHHHHHHH1HHHHHHHH11-------------------111HHCHHHH111HHHHHHHHHHHHHHHHH1HHHHHHHHH-------------HHHHHHHHHHHHHHHH1111H---------------HHHHHHHHHHHH11111HCCCCHHHH11111HHH11111111HHHHHHHHHHHHH111111H--------------------CC   PredictedSECSTR
MODEL    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRLSLLDLAETLLALLLFALLALLLLPEEFVTFLTLFVFLSSELIALLLLVTGGSIIPSLKKWTEVLLLILLAALVLLLILLIRLWKKLQYSLGAAAVRVLIKMLVLLLNLRFFKKLERKKRLEERLARLIDLSFKESLKLVAAKPEAGAAGILSVQEALDVVEILSNKALLPRRLLALLLLSLLIWLLNALLSLYLLLAALGTLDVNLPQIKNLSLTVALVAISLATLASISNNLLPSFFIILTPGGANVGVREAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   HMMER3[PF03706.8_UPF0104_seed]
QUERY    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTYFVAAF----SIVLGFTLTYLVM----------QSFFLDDTWRAFSALA---------GSWTGGSANMVALQDILAVPETIFG---------YALIMDTINYSFWVMVMFWLVPFERMFNRWTKADTSKLESMSQEIAA-----------------------TVTDEKRE-----PTTFVHMIGLLGFSL-FIAALATVIG-ENL--PQIGTGINAMTWTILIVSIVGL----LLA-----LTPFASIPGSMDIGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   Q9K8K1|Unknown|Q9K8K1_BACHD[97 279]


PF00375.13_SDF_seed:
E:8.52e-02[Original]   E:9.98e-06[Fold-critical]   E:9.52e-08[Remnant]   Ratio[FC/R]:1.05e+02   Classification:TP
 TM       -------ccc--ccccccccccccccc--------------------------------------------------ccccccccc----------------ccccccccccccccccc-----------------cccccccccccccccccccccccc------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccccccccccccccccccc---------------------------------ccccccccccccc-------ccccccccccc---------------ccccccccccccccccccccccccccc----------------ccccccccccccccccccc---------------------------cccccccccccccccccccccccccc---ccccc---cccccccccccccccccccccccccccccccccccccc--ccc--cccccccc-ccc---cccccccc----------------------------   TMSOC
STRUCT   S----?HHHH--HHHHHHHHHHHHHHTT--------------------------------?--HHHHHHHTH-HHHHHHHHHHHHH----------------HHHH-HHHHHHHHHHSS?---HHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHT??-----------------------------?S????----------??S?S?????????HH----HHHTTS?S?-------HHHHHH--------TT--------------------------------------------------------------------?HHHHHHHHHHHHHHHHHHHT--?SSHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHH-HHHHH-------HHHHHHHHHHH-HG-----GG?ST-HHHHHHHHHHHHHHHHHHTHHHHHHH-HTT?-?HHHH-HHHHHHHHHHHHHHT?TTTSHHHHHHHHHHTT----------?--B?HHHHHHHHHHHHHH??HHH-HHHHHHHHHHH---HHHTT??-??-HHHHHHHHHHHHHTTTT????TTHHHHH-HHHHHH--HTT---???TT?HH-HH---HHHHHHHTHHHH-HHHHHHHHHH-HHHHHHHHHHHH   PDB/DSSP
MODEL    LLKLTLQILIPFALVLGVVLGLLLQLLLEFPDESLKSEKLPTTIIKKTVDAVPKFGVGSAFVVFPEVATWLKTPLGDLFLNLLKML----------------VVPLIVFFSIVSGIASLGDSEGKKLGDRIRLGGKTLLYFLVTTAIAAIIGALLLANLFQPGAGLSEETRTEPPSA-----IDLRLALSGSGGAAISSAKLSIGRFMAAAASAKATEVPSLLDVNDQFLLNIIPSNDIFPYVHIFAALAGSTVTEAREGYQTKYVPVRKKVMVNNDTENVHSIASVVATSIRILSISSSAYSSTNLAEEAAESTVLWKSSVEYTSGTNVLQVIVFAILFGIALAALGEQNKGPEKLKEKAKPLLKKFFESL--NEVMMKVVNWVMKPLAPIG-------VFALIANTVGTGFGDDERFLGTLGRSLGKYVLTVYLALAIHLFVVYPLLLKFLGGLVNPFKFFLKKIRPALLTAFSTASSAATLPVTLECAEENLRDSSCNDLLDGPVVSKSIASFVLPLGATINMDGTAAIYQAVAAIFILFGAQAYGVDPLSSLGQLLTIILTATLASIGAAGVPGGGLVAALALVLSGIAVGSNLLPVLIAPLDEGAILGIALILAIDRILYDMFRTAVNVTAGDAVAAVVVAKL   HMMER2[PF00375.13_SDF_seed]
QUERY    L---FLSILI--GMTALIVWA--------------------------------EYKIGGKF--FKYVPAIVLIYLGAAFMNTFGLFGDSESLSNTSYGVRNALLPAMILLMLLQ--CDLRK--IIKLG---PKLLITYFVAAFSIVLGFTLT-YLVMQSFFLD----DTWRAFSALAGSWTGGSANMVALQDILAVPE----------TIFGYALIMDTINYSF----WVMVMF---WLVPFERMFNRWT--------KA----------------DTSKLESMSQEIAATV-------------------------TDEKREPTTFVHMIGLLGFSLFIAALATVIGE--NL--------PQIG-TGINAMTWTILIVSIVGLLLA-LTPFASIPGSMDIGRVMLYTIVA-IIASGADFSSIG-EIPVYIIAGFMVLLFHGLILFGFA--KLFKL-DLFTL-------------------------------------------G--V------------------AS-----------L---ANIGGM--VS------------------------------APVLAG--AFNRALIP-----V-------GVIMALIGGFM-G---TWFGVL-----TAEILSRL   Q9K8K1|Unknown|Q9K8K1_BACHD[7 388]

E:9.46e-05[Original]   E:4.99e-16[Fold-critical]   E:1.48e+04[Remnant]   Ratio[FC/R]:3.37e-20   Classification:TP
 TM       -------ccc--ccccccccccccccc--------------------------------------------------cccccccccccccccccccccccccc-----------------cccccccccccccccccccccccc-------------------------------------------------------------------------------------------------------------------------------------------------------------------ccccccccccccccccccc---------------------------------ccccccccccccc-------ccccccccccc---------------ccccccccccccccccccccccccccc----------------ccccccccccccccccccc---------------------------cccccccccccccccccccccccccc---ccccc---cccccccccccccccccccccccccccccccccccccc--ccc--cccccccc-ccc---cccccccc----------------------------   TMSOC
STRUCT   S----?HHHH--HHHHHHHHHHHHHHTT--------------------------------?--HHHHHHHTH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHSS?---HHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHT??------------------------?S????----------??S?S?????????HH----HHHTTS?S?-------HHHHHH--------TT--------------------------------------------------------------------?HHHHHHHHHHHHHHHHHHHT--?SSHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHH-HHHHH-------HHHHHHHHHHH-HG-----GG?ST-HHHHHHHHHHHHHHHHHHTHHHHHHH-HTT?-?HHHH-HHHHHHHHHHHHHHT?TTTSHHHHHHHHHHTT----------?--B?HHHHHHHHHHHHHH??HHH-HHHHHHHHHHH---HHHTT??-??-HHHHHHHHHHHHHTTTT????TTHHHHH-HHHHHH--HTT---???TT?HH-HH---HHHHHHHTHHHH-HHHHHHHHHH-HHHHHHHHHHHH   PDB/DSSP
MODEL    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGDRIKLGGKTLLYFLLTTLIAAIIGGLLLALLIKPGAGLSEETKTEPPSAIDAQAAASSSGLALSASAKLSIGRLMASAKSAKKTEVDSLLDVNDILLLNLIPSNDIFPYVHIFEALAGALVTESREGAKTKYVSKEAKVLVVNDTENVHSISSAVLNSIRILSISSSAYSTTTLVKEAAESTVEIKSKAEATSGTNVLAVIVFAILFGIALAALGEKAKGPEKLKEEAKPLLLKFFESLN--EVVMKVVSLVMKPLAPIG-------VFALIAATVASGQGDDEAILGALLTSLGKFLLTVYLGLLIHLLVVLPLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   HMMER3[PF00375.13_SDF_seed]
QUERY    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxI---KLGPKLLITYF-VAAFSIVLG-FTLTYLVMQSFFLDDTW--------RAFSALAGSWTGGSA-NMVALQ--DILAVPETIFGYALIMD----TINYSFWVM-VMFWLVPFERMF--------NR------------WTKADTSKLESMSQEIAATV-------------------------TDEKREPTTFVHMIGLLGFSLFIAALATVIGE--NL--------PQIG-TGINAMTWTILIVSIVGLLLA-LTPFASIPGSMDIGRVMLYTIVAIIA-SGADFSSIG-EIPVYIIAGFMVLLFHGLILFGFAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   Q9K8K1|Unknown|Q9K8K1_BACHD[88 324]


PF00999.16_Na_H_Exchanger_seed:
E:8.25e-03[Original]   E:2.69e-06[Fold-critical]   E:7.01e-05[Remnant]   Ratio[FC/R]:3.84e-02   Classification:TP
 TM       -------------------------ccc--------cccccccccccccccccc---------c--------------------------------ccccccccccccccccccccc--------------------------ccccccccccccccc-----------cccccccccc---------------cccccccccccccccccccccccc-----------------ccccccccccccccccccccccc--------------------------------ccccccccccccccccccccc--------------------------cccccccccccccccccccccccccccc-------------ccccccccccccc---------ccc------------------cccccccccccccccccccccc--------------cccc-------------ccccccccccccccccccccccccc------------------------------cccccccccccccccccccccc----------------------------cccccccccccccccccccccccc-------c--   TMSOC
STRUCT   HHHHHHHHHHHHH--H-HHTTT---??H--------HHHHHHHHHHHSTTTT?---------?-S???---------------------------HHHHHHHHHHHHHHHHHHHHT??HHH-HHTTHHH--------------HHHHHHHHHHHHHHH------------HHHHHH---------HHT?----?HHHHHHHHHHH-H???HHHHHHHHH-----HTT?TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTSS??HHH---------------HHHHHHHHHHHHHHHHHHH-TSTTTS?GGG--------------S??S?HHHHHHHHHHHH--HHHHHHH-TS?H-------------HHHHHHHHHHTT-----------TSHHHHT--?HHH----HHHHH----HHHHHHHHHHHHHT??--------------TTST--------T?SHHHHHHHHHHHHHH-H-HHHHHHHHHTG-----------------G-GHHHHHH---HHH-HTT???HHHHHHHHHHHHHT------T?S?H--------------HH-HHHHHHHHHHHHHHHHHHHHHH-------HHH   PDB/DSSP
MODEL    AVLLLLLALLAGLSFLLARRLGSVLLPPEDSLVIQLVVGLILAGILLGPSGLGSTVIYMIDLIPVEPDLHEALKPILEVTLSCEVVEMQFPANVELDLEVLAELGLILLLFLAGLELDLRELLRKNGKSNKKLQNDDEKNLPGILLLALLGVLLPFLLLTILELPGLLGIGLLLALLLFFPMFTTPLGLLLGIPLLEALFLGAALSSATSPVVVLAILKGFAGKERGRLNTRLGTLILGEAVLNDIVAVVLLAVLLALAGVLGLGGGVGGLSDLGLSLEVLRILFLILGILLLLILLVVALGGLLLGLVFPWLLRLLTRFTKRA-------RESGDRELEVLLVLALALLAEGALLAELLFGLSG-------------ILGAFLAGLVLSRLRERKDAAEANSRFRNEKKLSEKSRTTLEPFGYMLAGLFLPLFFVSVGLSLDGILDHIAGEDGGLVLSVLLTDKGDLASNGLSLLLLVLLLLVAILLPGKLLGVFLLARLLNKFSRQRGKKKPRTDGQLSLREALIKWIVGHLGLLQRGEVALALAAIGLQLLNADGNGLIDRITPFKIESKHWQLIELIYTLLVIVVLLTTLVQGLTLKPLIAQIARKLKK   HMMER2[PF00999.16_Na_H_Exchanger_seed]
QUERY    SILIGMTALIVWAEYKIGGKFF-KYVPA--------IVLIYLGAAFMNTFGLF---------------GDS--------------------ESLSNTSYGVRNALLPAMILLMLLQCDLRK-IIKLGPK---------------LLITYFVAAFSIVL------------GFTLT-YLV-----MQSFF-LDDTWRAFSALAGSW-T---------------GGSANM------------VALQDILAVPETIFGYALI-------MDTINYSFW-----------------VMVMFWLVPFERMFNRWTKADTSKLESMSQEIAATVTDEKREPTTFVHMIGLLGFSLFI--AALATVI-GENLPQIGTGINAMTWTILIVSIVGLLLA-----------LTPFAS---IPGS-----MDIG----RVMLYTIVAIIASGAD--------------FSSI----------G--EIPVYIIAGFMVLL-FHGLILFGFAKLF---------------K-LDLFTLG---VAS-LANI-GGMVSAPVLAGAFNR------ALIPV--------------GV-IMALIGGFMGTWF--GVLTAEI-------LSR   Q9K8K1|Unknown|Q9K8K1_BACHD[10 387]


PF13347.1_MFS_2_seed:
E:8.31e-02[Original]   E:4.11e-06[Fold-critical]   E:1.15e-04[Remnant]   Ratio[FC/R]:3.57e-02   Classification:TP
 STRUCT   ????HHHHH---H-HHHHHHHH--HHHHHH-HHHHHGHHHH--HHHH-------HHHHHHHHHHT---------HHHHHH---------HS?-SHHHHHHHHHHHHHHHHHTT?----------------------------------------------------------------------------------------?SST------------------HHHH--------------------------------------H---HHHHHHH-HHHHHHH--HHH--HHHHHHS?TTS---TTTTHHHHHHHHHH-HH--HHHHHHHTTS----------?SHH---------------------------------------------------------------------------------------------------------------------------------------------------------------------HHHHHHHHHHHHHHH---HHH--------HHHS??S?HHHHHHHHHH?SSS---------------HHHHHHHHHHHHHHHHHHSSS?SSTTHHHHHHHHHH--HHHHHSSSHHHHTHHHHHHHHHTTTST---HHHHTTH-------HHHHHHHHHHHHHH-HH-TTSSS---?SHH-HHHHHHHHHHHHHHHHHHHHH-----TT?HHHHHHHHHHHHHHHHHHHHHTTTTHHHHHTTTTS?---------SS??HHHHHHHHHHHHHHHHHHHH-HGGGG-------GGT------S?SS------------HHHHHHHHHHHHHHH-HHHHT?????   PDB/DSSP
MODEL    EKIGGYGLGSILDSLGSNLIYGGGMNLLSTIYLLYFYTDVLFNGLSAGTNNKMVAAVGTIFLVARIWDAFNDPIMGAIIDNLYRTRIRTRWGKKFRPWLLIGAIPLAILLVLLFILPSLMPQLPKMVTVHLQQASNTDIATAGVQKPGLHDSLSWFTVSNRDLTLSGNASSADFSVILHRQPESPTRFTIQTTTDKSAPLHGTTPPFGLSGTGVNWQIPQVVTVKLAYSHGDATNVSMALRILPTSDVLNMPLLNKLGIISWSSLQAVLFYITYLLLFGLAYTFVPLNIPYWSLIPVLTRDPKVGERTSLASYRRIGATLVGGLLLVAVIAPPLVLFRIITDFSKAALGGGNGASTAELSFGIKLKQVILVNEVGNGASRIEATAKLPGYEEPSTFQKILMKVANVPDSKNEGKIYKSKKTYYINNETYFLESKILHKGEQDQLFLDKDLKNAHKAGSDTEPFAQIKYCLEGFKSTSVDMGTVFKKNKDTISDEMVPVDRTLALGNDTLSIARRGYFLAALIIAILAVLTILFLI--------CFLGTKERVERQAGFGIYEDSDGDSATIAAGPIEEVKRVVVPPPPKEKVSLKDMFKALFKNRPLLILLLLYLLDDNALALAVRNGLALYYFTYVLGNAGDGGTGLLFSLFLLEVGGLLTTIGTIAAILGAPLWVPFLLAKRFWVIGKKRRLFLAGLLLAAIGLVLLFFLPPLGLWAEDGTPGNVWLFLVLVVLIGFGLGLATTLLPWAMLADVVDYGEWKNTTGKRREGIVFSVYSFADKLGGALGGAIVGLLLDAFAGYVANATARTSEKAAAADQSAAALSGIRLLFTLIPAVLALLAALILLRFYPLTD   HMMER2[PF13347.1_MFS_2_seed]
QUERY    AIVL-IYLG---AAFMNTFGLFGDSESLSN-------TSY---GVRN-------ALLPAMILLMLL-----------QCD-------LRKII-KLGPKLLITYFVAAFSIVLGF-----------------------------------------------------------------------------------------T--------------------------------------------------------------L-----TYLVM----QSFF--------------LDDT---------WRAFSALA-GS-WTGGSANMVAL---------QDILA---------------------------------------------------------------------------------------------------------------------------------------------------------------VPETIFGYALIMDTINYSFWV--MVMFWLVPFERMFNRWTKA----------------------------DTSKLESMSQEIAATVTDEKREPTTFVHMIGLLGFSLF---IAALATVIG---------ENLP---Q---IGTGINA-----MTWTILIVSIVGLLLALTP-FASIPGSMDIGR-VMLYTIVAIIASGADFSSI------------GEIPVYIIAGFMVLLFHGLIL---------------------------FGFAKLFKLDLFTLGVASL-----A-NIGGMVSAP---------V--LAGAFNRAL----IPVGVIMALIGGFMGTWFGVLTA   Q9K8K1|Unknown|Q9K8K1_BACHD[36 382]


PF07155.7_ECF-ribofla_trS_seed:
E:2.18e-03[Original]   E:1.21e-05[Fold-critical]   E:4.27e-05[Remnant]   Ratio[FC/R]:2.83e-01   Classification:TP
 TM       ------cccccccccccccccccc---ccccc------------cccccccccccccccccccccccccc--------cccccccccccccccccccccccc----------------------ccccccccccccccccccc---ccccc--------------cccccccccccccccccccccccc--ccc--   TMSOC
STRUCT   ??-?TTHHHHHHHHHHHHHHHHH-H--???B?S--SS?B-??TTHHHHHHHHHHSS??STHHHHHHHHHHHHHHHSS-?G-GGHHHHHHHHHHHHHHHHHH??S?S?SSH-------HHHHH--HHHHHHHHHHHHHHHHHHH-----------------S?HHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHH   PDB/DSSP
MODEL    KLSSTKKVVATAILAALFVVLGRAFPFINIPTPIPNTGGVYINLGDAGIALAAVLFGPKVGFLVGGIGHALKDLLSGVYGSIWAPFTLIIKGLEGLIAGLIAKKLKKNLESHDKNGIFNLLGTFLLLFNIVMVIGYFIAWGLLNPAAAPIGDILIYQPSEPAWKVALQSIPGNIVGQAVVGAIVGLPLLTYKALAK   HMMER2[PF07155.7_ECF-ribofla_trS_seed]
QUERY    TW-TILIVSIVGLLLALT-----PF--ASIPG--------SMDIGRVMLYTIVAI--IASGADFSSIGEIPVYIIAG-FM-----V-LLFHGLILFGFAKLFKLD------------LFTLG----VASLANIGGMVSAPVLA---------------GAFNRALIPVGVIMALI-GGFMGTWFGVLTA--EILSR   Q9K8K1|Unknown|Q9K8K1_BACHD[251 387]


PF03547.13_Mem_trans_seed:
E:3.11e-03[Original]   E:6.73e-06[Fold-critical]   E:1.54e-05[Remnant]   Ratio[FC/R]:4.37e-01   Classification:TP
 TM       -----ccccccccccccccccccc----------cccccccccccccccccccc----------ccccccccccc---ccccccccccc-----------------ccccc----cccccccccc--cccccccc------------------------cccccccccccccccccccc-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccccccccccc----------ccccccccc----------------------------cccccccccccccccccccccc-----------------------cccccccccccccccccc------------cc------cccccccccccccccccccccc---------ccccccccccccccccccc-   TMSOC
STRUCT   CCCCHHHHHHHHHHHH1HHH111111111-1111HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHH11111HH-----------EEEE----EECCCCCCCC--HHHHHHHH111--------------------111HHHHHHHHHHHHHHHHHH-------------------HHH11111--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11HHHHHHHHHHHHHHCCCHHHHHHHHHH----------HHHH111111---------------------HHHHHHHHHHHCHHHHHHHHHHHH--------------HHHH111111111HHHHHHHHHHHHHHHHHHHC11CCCC1HHHHHHHH111111111111HCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC   PredictedSECSTR
MODEL    TVVEAVLPVFVIMLLGLYLAGKWWGILSP-DQASGINKLVVYFALPLLIFSFISENVTLEMILDFWLIPVLVVLI---VLISLIIGFLVWHPTGTKRIFKLPLEWRGVLIL----TSALPNTGFL--GLPLLLALYGELKDLLWDKIPFGNREKCSSEGLSYAIISVVLGVIIIYTLLLFRLIENDFHYKGDDDEENFLFESRGAKRDKSEEFGESTSGSIVSINVDSDVLSLDGSEDPLETEEEIKEDGTLHVTVRKSNASRSDIVSTSSEERGGVGGDSSTPRPSNLTGAEIYSLQSSRNTTPRGSSFNHTTDFYRTSHVHNNRRNSITGSLRSISMMELPAGRLSNFGPADAYVDQYGRRRRKSSISVQGSRGPTPRPSNFEENLARASTLRFGTNSAAAGAHYPAANPKGMSGPKTAAKAPKKASANNGKAAAEKAKEAAAVVKGKDQSVVSSSASSDRDGLQLDAGANSASESSDQGGGGGRDYADDDNKKVPEKKDGKKDGGQGAEQEDAAVERASQSLGKAGLDSEAAADAAGSKEDEETSEVKLMPPTSVMTLLILIVVLLKLILNPPTYASLLGLI----------LALVFGFKLPLIFPTDAPLKIKQAEEDAFVEEIIQKSISILGDAAIPMALFSLGLFLALGKLKIALGAATATIAVDKSLIVLLILRLILVPLVMLGIVLLLGGSLRGLILLKVAIVQDDPMFLFVLLLQAALPPAIVLFVLAKLYNVDEEEASTVVLWTTLLALLTLPLWI   HMMER2[PF03547.13_Mem_trans_seed]
QUERY    KFFKYVPAIVLIYLGAAFMNT-F-GLFGDSESLSNTSYGVRNALLPAMILLMLLQCDLRKIIKLGPKLLITYFVAAFSIVLGFTLTYLV-----MQ-SFFLDDTWRAFSALAGSWTGGSANMVALQDILAVPETIFGY------------------------ALIMDTINYSFWVMVMF---WLVPFE---------RMFN-------------------------------------------------------------RWTKADTSKLE----------------------------------------------------------------SMSQ----------------------------------------------------------------------------------------------------EIAATVTDEKREPT------------------------------------------------------------------------------------------------------------TFVHMIGLLGFSLFIAALATVIGENLPQIGTGINAM-TWTI-LIVSIVGLL------------LALTPFASIPGSMDIGRVMLYT--IVA----IIASGADFSSIGEIPVYIIAGFMVLLFHGLILFGFAKLFK--LDLF-TLGVASL-------------ANIGGMVSAPVLAGAFNRA--LIPVGVIMALIGGFMGTWFGV   Q9K8K1|Unknown|Q9K8K1_BACHD[29 379]


PF07884.9_VKOR_seed:
E:4.32e-02[Original]   E:7.51e-04[Fold-critical]   E:7.64e-03[Remnant]   Ratio[FC/R]:9.83e-02   Classification:TP
 TM       ----ccccccccccccccccc------------------------------------------------------------ccccccccccccccccccccccc-----------------ccccccccccccccccccccccccc--cccccccccccccccccccccccccc---   TMSOC
STRUCT   ?SHHHHHHHHHHHHHHHHHHHH---HHH???-----?S?????-----????--SGGGSSSSEE--TT-------------EEHHHHHHHHHHHHH-HHHH?????T---------T?STTHH-HHHHHHHHHHHHHHHHHHHHHH--HTS?-???HHHHHHHHHHHHHHHHHHSS?   PDB/DSSP
MODEL    TRWIILILGLIGLLASLYLTLE---KLTLLELDPGYVASCDINEAKPVVSCSCVKVLNSPWATIAKFGLLGSILGNDSLLNIPNSLLGILAYLVVLYLLGVLPLAGVLSENKKLRKTLSRWTWRLGLFLGSLVGVVFSLYLIYISLQAFVIGGALCLYCILSAVVSIILFILSTLGV   HMMER2[PF07884.9_VKOR_seed]
QUERY    MTWTILIVSIVGLLLALTPFASIPGSMDIGR-----VMLYTIV---AIIASG------ADFSSI--GE-------------IPVYIIAGFMVLLFH-GLILFGFAKL--------FKLDLFTL-GVASLANIGGMVSAPVLAGAFN--RALI------PVGVIMALIGGFMGTWFGV   Q9K8K1|Unknown|Q9K8K1_BACHD[250 379]


PF00083.19_Sugar_tr_seed:
E:5.20e-02[Original]   E:7.37e-06[Fold-critical]   E:1.61e-07[Remnant]   Ratio[FC/R]:4.58e+01   Classification:TP
 TM       --------------------------------------------------------------------------------------------------------------cccccccccccccccccccccc--cc---------ccccccccccccccccccccc--------------cccc--------ccccccccccccccc-ccccc--------------ccccccccccccccccc---cccccc-------------------ccccccccccccccccccccc--------------------------------------------------------------------------------ccccccccccccccccccccccc---------------cccccc----ccccccccccccccc----ccc-------------cccccc-------cccccccccccccccccccc----------------cccccccccccccccccccccccccc-----------cccccccccc--cccccccccccccc-----------cccccccccccccccccccccc---------------   TMSOC
STRUCT   HHHHHHHHH-HHHHHHHHGGGGTHHHHHHHHTGG-G???HHH------------------------------------------------------------------HHHHHHHHHHTHHHHHHHHHHHHH--HHHHHT?HH-HHHHH-HHHHHHHHHHHHH?TTTTTS?SSSSSS??GGGGG?HHHHHHHHHHHHHHHHHHHHHH-HHHHHTTS---?GGGH-HHHHHHHHHHH-HHHHHHH---HHHHHHH-HTTS?TT--TTTTTHHHHHHHTTHHHHHHHHHHG-GGS???HHHH-HHTT?HH-HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHT--------THHHHS??T------HHHHHHHHHHHHHHT?HHHHHHHHHHHHHHS-S??HHH-HHHHHH----HHH-HHHHHHHHHH-H---HHHHHH?SH-------HHHHHH-------HHHHHHHHHHHH-----HHHHTT??----------HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSS?TTTHHHHHHHHHHHHH--HHHHHHHTHHHHH?HHHHHHHHHTT?HHHHHHHHHHHHHHHHHHHH????TT??HHHHGGGT   PDB/DSSP
MODEL    VALVAALGGSFLFGYDTGVIGAFLTLISFLKRFGNALTSSGADAELSSYKCEWTDTSVTVSNTTYGEVCGWADRTTCFLKYSDEAGCLSDSCSKASDSENECKNYVGYSTVLTGLIVSIFSVGCLIGSLFAG--WLGDRFGRKRKSLLISANVLFVIGALLMGAAKGKGTSIIGGASVYMLIVGYVPEFVIVRVIVGLGVGGISVLV-PMYISEIANEYPKKLRLGALVSLYQLAIRTFGILVA---AIIGLGLINKTSNEAEEALSSDGWRIPLGLQLVPALLLLIGLLLFLPESPRWLKVEKGKLEIEAREVLAKSLLLRGVEVKESDVDQEIQEIKDELEASQEEEKLKAGKASWLELFSRKTRPKYRQRLLMGVMLQIFQQLTGINAIFYYSPTIFESL-GVSDSTLSLLVTI----IVGKVVNFVFTFIALIFLGFLVDRFGRRTILLIGLPLLLLGLPGMTVAAAGMAICMVVLGASVIVALLGVAKSKEGDPSSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWPLLANFLIGFLFPIITGAIGLERDFLGGYVFLVFAGLLVLFIIFVFFFVPETKGRTLEEIEELF   HMMER2[PF00083.19_Sugar_tr_seed]
QUERY    FLFLSILIG------MTALIVWAEYKIG-GKFFK-YVPAI-------------------------------------------------------------------------VLIYLGAAFMNTFGLFGDSESLSNTSYGVR-NALLP-AMILLMLLQCDLRKIIKL-----GPKLLITYFVA--------AFSIVLGFTLTYLVMQSFFLDDTWRAF-SALA-GSWTGGSANMV-ALQDILAVPETIFGYALIMDTIN-----------------YSFWVMVMFWLV-PFERMFNRWT---------KADTSKLE------------SMSQEIAATVTDEKRE-------------------PTT-----FVHMIGLLGFSL------FIAALATVIGENLPQIGTGINAMTWTILIVSIVG-LLLALTPFAS-I---PGSMDIGRV-------MLYTIV-------AIIASGADFSS--------IGEIPV----------YIIAGFMVLLFHGLILFGFAKLF-KL--DLFTLGVASLAN-IGGMVSAPVLAGAFNRALIP----------------VGVIMALIGGFMG--TWFGVL---------TAEIL   Q9K8K1|Unknown|Q9K8K1_BACHD[6 385]


PF00115.15_COX1_seed:
E:7.88e-02[Original]   E:5.78e-05[Fold-critical]   E:1.23e-08[Remnant]   Ratio[FC/R]:4.70e+03   Classification:TP
 TM       ------ccccccccccccccccccccccc---------------------------------------------ccccccccccccccccccccccccccc-----------ccccccccccccccccccccc------ccccc--------------------------------------------------ccccccccccccccccccccccc--cc--------------cccccccccccccccccccccccccccccc------------------------cccccccccccccccccc------------cccccccc--------ccccccccccccccccccccccccccc----------ccc-ccccccccc----------cccccc-----------ccccccc-------------------------ccccccccccccccccccccccccc-------------cccccccccccccccccccccc----ccc---------------ccccccccccccccccccccccccccc---------------------------------------------------   TMSOC
STRUCT   HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHT--SSS------------------S?S---SS?H---HHHHHHHHHHHHHHHHTTHHHHHTTTHHHHHHHHHTT?SS?SSHHHH-HHHHHTHHHHHHHHHHHH------HSTT??--------------?S?TT??T-TTT-STTT-----T?------SSHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHSS?TT??GGGS-?HH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHS???SS?GGGT??HHHHHHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHTT?SS?TTHHHHHHHHH-HHHHHT-TS?GGGG?TT-S???HHHHHH-HHHHHHHTH----------HHHHHH-----------HHHHHHH------HTT?----?----????-HHHHHHHHHHHHH-HHHHHHHHHHHSHHHHHHHTTBHHHHHHHHHHTHHHHHHHHHHHHHH----HHHHHHSB-----???HHHHHHHHHHHHHHHHHHHTHHHH-HHHT-T?BSS?----SS?------?GG-------GHHH----HHHHHHH--HHHH   PDB/DSSP
MODEL    HKDKIGLLYLVTALVFFLIGGVLALLIRLQLAPATPRYDLVLGSPFSPGHLQASGDFNAELSPDAWLLTYNQLRTLHGNIMIFFFAMPALIGGFGNYLVPLMIGARDLAFPRLNLALSFWLLVVGGLLALVSLVGAYGLLLGGGAGLANITGNFWLGTPGTGWTEYPVPLSTSTTSNLNAVSSGEGNQLGLGVDLWILGLLLVGISSILGAINFIVTGVILKMRAPGMTLSRMVPLFAVWSLLATAILLLFAFSPVLAVALLMLLLDRNFGTSFFDPAGGGDPLLYQHLFWFFGHPEVYILILPIAF------------GIVSEIIPTFSGRKPLFGYKWMVLAMVFAIAFLGGFLVWAHHMFTDSGLPPWLRAF-FSVATMLIAALASMIHALVIPTGVKAARRRKGLNNGVFNWLATLERAGRLWGGWRKHREVFKIRFSRTPMLFALGFIVLFFTIGGLTGVMLALVPLDYQLHDTYFVVAHFHYVLYGGAVFALFAGIYYFCWKWFPKLTGRKEDGEMYNERLGKLHFWLTFIGFNLTFFPMHFPLGLLQGMPRRVSSVVADYPYARFMPPQEAVPGREFAPWNLSINLLRTIGVAGFLL   HMMER2[PF00115.15_COX1_seed]
QUERY    AEYKIGGKFFKYVPAIVLIYLGAAFMNTFGL--FGD------SE-----------S----LSNTSY-GVRNALLPA----MILLMLLQCDLR--------KIIKLG----PKLL-ITYFVAAFSIVLGFTLTY------LVMQSFFLDDT---------------------------------------------WRAFSALA-GSWTGGSANMVAL--------QDILAV-------PETIFGYALIMDTIN-----------------------------YSFWVMVMFWLVP------FER-MFNRWTKADTSKLESMSQEIAATVTDEKR---EPTTFVHMIGLLGFSL-FIAALATVIG-ENLPQIGTGINAMTWTILIV------------SIVG-----------LLLALTP------FASIP--GS----MDIG-RVMLYTIVAIIAS--------------GADFSSIGEIPV-----YIIAGFMVLLFHGLILF----GFAKLFKL----DLFTLGVAS----LANIGGMV-SAPVLA-GAFN----RAL----IPV------GVI---MA--LIGG-----FMGTWF--GVLT   Q9K8K1|Unknown|Q9K8K1_BACHD[22 381]


PF09847.4_DUF2074_seed:
E:8.15e-02[Original]   E:1.15e-03[Fold-critical]   E:1.02e-07[Remnant]   Ratio[FC/R]:1.13e+04   Classification:TP
 TM       ------cccccccccccccccccccc----------cccccccccccccccccccccc-------------------------ccccccccccccccccc--cccccccccc--------ccccccccccccccccccccccc----------------------cccccccccccccccccccc---------------------------------------ccc--cccccccccccccccc----------------------------------------------------------------------------------------------------------------------------------------ccccccccccccccccccccc-------ccccccccccccccccccccc----------------------cccccccccccccccccccc---cc-----------ccccccccc----ccccc----   TMSOC
STRUCT   CCHHHHHHHHHHHHHHHHHHHH---------------11HHHHHHHHHHHHHHHHHHHHH11111111111111111111111EEEEEEEHHCCHHHHHH11HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH1HHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH11-------------EE11-------------11HHHHH11HHHHHHHH1HHHHHHHHHHHHHHHHHC11CCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHEEEEE-----------EEECCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC1CCCHHHHHHHHHHHHHHHHHHHEEE-----------1111111111111HHHHHHHHHHHHHHHHHHHHHHHHHHH111111HHHHHHHHH1111HHHHHHHCC   PredictedSECSTR
MODEL    NIKLSVLLQSIMFTFFGLVLVVPSLISERIVQRGVFLSSFLILLFIYSLFITALNSAYFASSISINKLLEPLRSLPIKLLGRVLSVFWLIDTLPSFAFLVLPSIFIAVLLVGNIY----SGLLGLLWSILAILLGAHSLGLLLFIKFGKRISGRGSRSKALLRIFGRLLFLVFIFGIYLLIQYNADIVKQNYEIIPEIPEYYEYIFPILNIDKTVFYALTIYEPFKSKYLLLSLLYTGLLFFFLYKYSIRRLWERLLEPEGEKVKGSVKTEYKIKVRSPLLAFLIKDFKIILRKSQLLVLLLMPIFIVIPNIYSIAKEGFPLRVDPILLTIFLIAFIIVLSSIYLILFLKIEVNGFMSLERSSLLRSLP--LSRREFLLSKLLLILLIYLAISLTLLILVLIYKGFTNALYLLILFPSPILTSGISLLIVYNRLIKKIPKGAETINLPSLGGFLAFIVLFILNGIIVGIVAILSFILSEPLSLSIKLFFLVSTAITLAVLAIIALLLWKK   HMMER2[PF09847.4_DUF2074_seed]
QUERY    MIENGFLFLSILIGMTALIV-WAEYKIGGKF--------FKYVPAIVLIYLGA---AFMNTF----GLFGDSESLSNTSYGVRNALL------PAMILLM-----LLQCDLRKIIKLGPKLLITYFVAAFSIVLG-FTLTYLVMQ----SF-----FLDDTWRAFSALA------GSWTGGSANMVAL-QDILAVPETIFGYALIMD------------TINY---S-FWVMVMFWL-VPF--------ERMFNRW-------TKADTS---KLESMSQEIAATVTDEK---REPTTFVHMIGLLGFSLF-IAALA----TVIGENLPQIGTGINAMTWTILIVSIVGLLLALTPF---------ASIPGSMDIGRVMLYTIVAIIASGADFSSIGEIPVYIIAG------FMVLLFHGLILFGFAKLFKLDL---------FTLGVASL-ANIGGMVSAPVLAGAFNRALIPVGVIMALIG------GFMGTWFGV----LTAEILSRL   Q9K8K1|Unknown|Q9K8K1_BACHD[1 388]


PF07556.6_DUF1538_seed:
E:1.00e-01[Original]   E:3.16e-04[Fold-critical]   E:1.42e-09[Remnant]   Ratio[FC/R]:2.23e+05   Classification:TP
 TM       -----------------------ccccc-cccccccccccccccc-------------------------------------------cccccccccccccccccccccccc--------------------------ccccccccccccccccccccccc-----cccccccccccccccccccc-----cccc------cccccccccccccccccccccccc--------------ccccccccccccccccccc--cccc-   TMSOC
STRUCT   CEEEEHHHHHHHH1CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH111111------------HHHHHHHHHHHHHHHHHHHHHHH1CCHHHHHHHHHHHHHHHHHHHCC11111CCHHHHH11111111111HHHHHHHHHHHHHHH---------------11HHHHHHHHHHHHHHHHH--HHHCC   PredictedSECSTR
MODEL    IILVILFFQFLVLPKLPLPNLIRILVGL-LLVILGLTLFLVGLELGLFPIGESMGSALAKPEFIEEIAAAELVTASLPLLLKGSAVVFLWLLLLFGFLLGFATTIAEPALIALAEQAEEVSGSGGAISSTQEALNSYAKVLRLTVAIGVGIGIALGVLRIVYPGIPLHYLIIPGYLLVLILTFFAPLDAELKEFVGIAFDSGGVTTGPVTVPLILALGLGLASAKIEASAGSGGRNPLIDGFGLIALASLGPIIAVLI--LGILS   HMMER2[PF07556.6_DUF1538_seed]
QUERY    LLG-FSLFIAALA-TVIGENLPQIGTGINAMTWTILIVSIVGLLLALTPF-----ASIPG---------------------SMD--IGRVMLYTI--------------VAIIASGADFSSI--GEIP-------------VYIIA---GFMVLL------F-----HGLILFGFAKLFKLDLFTLGVASLANIGGM-----------VSAPVLA------GAF-NR------------------ALIPVGVIMALIGGFMGTWF   Q9K8K1|Unknown|Q9K8K1_BACHD[222 377]


PF03611.9_EIIC-GAT_seed:
E:1.28e-03[Original]   E:1.03e-05[Fold-critical]   E:9.49e-13[Remnant]   Ratio[FC/R]:1.09e+07   Classification:TP
 TM       ----cc--ccccccccccccccccc---------ccccccccccccccccccccccccc---------------------------------------------ccccccc--cccccccccccccc------------cccccccccccccccccc---ccccccccc--------------ccccccccccccccc-cccccccc--------------ccccccccccccccccc----cccccc-------------------------------------------ccc---cccccccccccccc--------------cc--------------------------------------------------ccc--ccccccccccccccccccccccccc-------------------------------------------cccccccccccccccccccccccccccc----cccccc------cccccc-----ccccccccccccccc-----------ccccc-------ccccccccccc---cccccccc-----ccccccc---------------------------------------------------------------------------------------------   TMSOC
STRUCT   CCCCCC11CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH1HHHHCHHHHHHHHHHHH1111111111111111111HHHHHHHHHHH11111HHHHHHH--HHH1HHHHHHHHHH111HHCCC--CEEEECHHHHHHHHHHHHHH---HHHHCC1CH---------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCC11CCCEEEECHH111111HHHH1111HHHHHHH11111111111111111111111111111111111111111HHHH---HHHHHHHHHHHHH---------------HH11----------------------HHHHH11HH--------------111HHH11HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH11111--------------1CCCC-CCCC--EECCC1CCHHHHHHHHHHHHHHHHHHHHH11111H------------HEE11111111111111111HHHH-----------CCCC111CCHHHHHHHHHHHHHH---HHHHHHHH11111HHHHHHCCC11111--------------------------------------------------------------------------------111111   PredictedSECSTR
MODEL    VNNILSTLGPAVLLGLIALIGLLLLKKKFSKALKGTLKTGIGFLILGAGAGPLLVGSLGPFAKAFVEAFGLSGKSSAQQVVPDNGWPAAEAIAALAQQTLFNAGFGSEVAL--IMIPLGFLVNILLALLRRFTKF--KYIFLTGHIWNFMAAMIAGV---LVYAGTSGNQNLLDDKEGVSVGDQWWLIIIGAVILGLY-MLISPALTQPYVRKVTGAPNDGIAIGHFSTATSMAPLGYALFALLSGLIGKLEEKKKSFGEKGKLKDPKKKDKKVKSTEDIKLPKKLGFFRDSTV---AGAILMLILFLIAGPHPIAGVADADKTVLFILFAAGLANVLVPKLDEFKRYARGPEFVESEELSAKEIGAAGKFNAGGQNFVVWGYILIQGITFAAGVAILLRGVRMFLAELVPAFKGISEKLVPGFKENKNIDLDGDGREAKPA-LDCP--VVFGYGAPNAVLIGFLSSFIGGLVPITILIGVLNGALGKIPIGAISLAVILAIPKVGNVPLFFAGAAAGVF-----------GNATIVVGGRRGAIIGSFINGLI---ITFLPALLIGLEYLPVLGPLGTAMAKAVGAALLDKKALMGNSLDNNNGSALKTAVEKVVNATGVNRITEAQSFVKSDSFNSLKAVNSTLAQAIEIISKSAPPGANTTFGDADF   HMMER2[PF03611.9_EIIC-GAT_seed]
QUERY    L--FLS-----ILIGMTALIVWAEYKIGGK-----FFKYVPAIVLIYLGAA-------------FMNTFGLFG---------DS-----ESLS--------NTSYGVRNALLPAMI-LLMLLQCDLR---KIIKLGPKLL-----ITYFVAAFSIVLGFTLTYLVM-QSFFLDDTW-------RAFSALAGSWTGGSANMVALQDILAVP-ETIFG--YALIMDTINY---SFWVMVMFWLVPFERMFNRW--TKADT---SKLE--SMSQEIAATVTDEK--------REPTTFVHMIGLLGFSLFIAAL--------------AT-------------------------------VIG------------ENL------PQIGTGINAMTWTILIVSIVGLLLA------------LTP-FA-------------SIPGSMDIGRVMLYT--IVAIIASGAD------FSSIGEI-----------------PVYII--A--GFMVLLFHGLILFGFAKLFKLDLFTLGVASL--ANIGGMVSAPVLAGAFNRALIPVGVIM-----ALIG---GF---------------------------------------------------------------------------------MGTWFG---V   Q9K8K1|Unknown|Q9K8K1_BACHD[7 379]


PF03169.10_OPT_seed:
E:3.73e-02[Original]   E:3.76e-04[Fold-critical]   E:1.96e-10[Remnant]   Ratio[FC/R]:1.92e+06   Classification:TP
 TM       -----ccccccccccccccccccccc---ccccccccccccccccccccc---cc------------------------------------------------------------ccccccc----ccccc-----ccccccccccc------------------------------ccccccccccccccccccccccc------------------------------------------------------------------------------------------------------------ccccccccccccccccccccccc----------------------------ccccc---cccccccccccc--cccccccccccccccccccccccccccccccc-----------------------------------------------------ccccccccc--cccccccccccccc-------------------------------------------------------------------------------------------------------cccccccccccccccccccccc-----------------cccccccccccccccc-cccccccc----------------------ccccccccccc-----------------ccccccccccccccc-------------------------cc----ccccccccccccccccccccc---------------------------cccccccc--cc--------------ccccccccccccccccccccc---------------------------------------------cccccccccccccccccccc-------cccccccccccc-------------------------------------------------------cccccccccccccccccccccc-   TMSOC
STRUCT   CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHH11H1--------------------------------------------EEE11111111111HHHHHHHHHH11111111111111111HHHHHHHHHHHHH-------------------1111111HHHHHHHHHHHHHHHHHHHHHHCCCEEE1111111111111111HHHHHHHHHH11111-------------------------------------------------------------------11HHHHHHHHHHHHHHHHHHHHHHHHHCCC1CCH11--------------------------------11111H-----------HHHHHHHHHHHHHHHHHHHHHHHH11111111--------------11111-----------111111HHHHHHHHHHHHHHHHHH11111HHHHHHHHHHHHHHHHHHHHHHHHH1111-------------------------------------------------11HHHHHH1111---------------------11HHHHHHHHH1HHHHHHHHHH----------------------HHHHHHHHHHHHHH-HHHHHHHHCCC11C1CCHH11111111HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC1CCCHHHHHH1111HHHHHHHHHHHHHHHHHHHH11H111111111111111111111111HHHHHHHHHHHH1111111111111111HHHHHHHHHHHHHHHHHHH----------------------------------------------HHHH------------HHHH1111111HHHHHHHHHHHHHH---------------------------------HHHHHHH------------1HHHHHHHHHHHHHHHHHHHHHCC   PredictedSECSTR
MODEL    ELTFRAVVLGILLAILGAAVNMYFGLRTGLVSISSIPAALLAYPLGKLLAKRRILPDDEYVEYVDGCRTDSANIPVDHPTDEQPRVFVKLTWKFTLGGIRFSLNIPGPFTIKENNLIQTMASAATFAGASSTGSGIALAAGIIFVLPALLFYGAEGESDPSGGGGDDRRGGQSFAGNSFGYAILLLLSTQLLGVGFAGPLRRFLVYPEHPKLPFGANEAWPSGLATAELLKALHTPGNHEVGAASELEERRERRRDESDEVLRSRRDPERADYLEEDEASEDAEAEAEEEKDKDISANGWKEAKSRLKFFLIGFVASFVYYWFPFYIFPALSSFCSWVCWIAPKAKMSSNPTFGLLFGGFGGLGGMGLLNFTFDWSAILGYLGSGLIVPLWVAVNMLIGAVLSWGILIPLLYYSGNVWYTAYLPSIMSNGLFDNTGASYNVNVYNESRILTSDGLLDYARYIGYGPMLLSGLYALGWSYGLFFAAITATIVHSILFHGRDIWQALKSFALEIWKAEVKKAREWVAVSYSASKPKSFPKQSKSSRRGPKKSKEEDVGRDDPHRRLMRKYKEIEVDISKQLADTQVANRLKHLVPMWWYLAGLVGLSLVLGIALVAALFGQTQLPVTRDFLATVILWGLLLALLLAFVFAI-PSAYIAGLTGSSNNPVSGLKGPMDARANILTELIAGYLLPGRGVKLLLVPLTVEQGPGGPLANLIFGGVGYNAAAQAGDFMQDLKTGHYMRGAPPRAQFVYGRRAQLIGTLVGSVVNPAVLNLLIDNQAYGCTGAQGDPGMDNSWTCPAMPQAFFSAAVAWGVIGGKRLFHTSGFGLPYYALLWGFLVGAVAPVLDWLLKVAASFIANGGRAVIKPWRRHKRVLPRSKWKKVKLSRRLSQLNPPLAFAGAGTQIGPYLPPSLSSMNPWAGWAILVGGLFNYYVRRAHTNHTKKDDGFKPATEPAQSVLSRRPVESERRKAWWRKYERKDEDLERAKQKNYVLAAGLIAGEALMGVIIAFLV   HMMER2[PF03169.10_OPT_seed]
QUERY    ENGF--LFLSILIGM--TALIVWAEYKIGGKFFKYVPAIVLIY-LGAAFM-----------------------------------------NTFGLFGDSESLS-----------------N---------T----SYGVRNALL-PAMILL-----------------------------------------MLLQCDLRKIIKLG--PKLLI---------TYFVAAFSIVLGFT------------------------------------------------------------------------LTY--LVMQSFFL-DD----------TW-------------RAFSALAGSWT----------GGSANMVA--LQDILAVP-----ETIFGYA---LIMDTI-NYSFWVM-------------------------------------------------------VM-----------------FWLVPFERMFNRW--------------------------------TKADTSKLESMSQE------IAATVTDEKREPT-------------------TFVHMIGLLGFSL-FIAALATVIGENLP-QIGTGI------NAMTWTILIVSIVGLLLALTPFASIPGSMDI--GRVMLY--------TIVAIIASGADFSSIG----------------EIPVYIIA-------------------GFMV--------------LLFHGLILFGF-----------AKLFKLD----------LFTLGV-------ASLAN--IGG--------------MVSAPVLAGAF----NRAL------------------------IPVG-----------------VIMA---L-IGGFMGTWFGV-------------LTAEILSR---------------------------------------------------------------------------L   Q9K8K1|Unknown|Q9K8K1_BACHD[3 388]


PF02028.12_BCCT_seed:
E:1.18e-02[Original]   E:4.33e-08[Fold-critical]   E:8.67e-21[Remnant]   Ratio[FC/R]:4.99e+12   Classification:TP
 STRUCT   HHHHHHHHHHHHHHHHH-----SS-SHHHHHHHHHTTHHHHHHTHHHHHHHHHHHHHHHHHHHHSG-GGG??S-SSTT???SS?HHHHHHHHHHHH??HHHHHHHHHHHHHHHHT?----------------?--TTS?-----------SS?H-HHHHHHHHHHHSHHHHHHH-HHHHHHHHHHTTT-S???----------------SSGGGGG-TTTS?-T-TT-??SS----SSHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHTTTS-?-------?--??-?------??HH-HHHHHHHHHHHTTGGGTTS-??S--HHHHHHHHHHHHHHHHHHHHHHHS?-HHHHHHHHHHHHHHHHHHH------------HHHHT??---TT---TT------SS?H----------------------------------------------HHHHHTTHHHHHHHHHTTHHHHHHHHHHHTTT??HHHHHHHHHHHHHHHHHHHHHHHH------HHHH---------HHHH-----HT?--????--------------TT?S-HHHHHHHHHTS-------------TTHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT---?S--S??HHHHHHHHHHHHHHHHH-HHHH--HGG----GHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHT?   PDB/DSSP
MODEL    VFIISALIILLFVLWGILPESLIFDPEAAGAVFNTLFAWITNNFGWFYLLLVLFFLVFLLFLAFSRKYGNIRLVGGDDEKPEFSTFSWFAMLFSAGMGIGLVFWGVAEPLYHFLSPFKLLGTAENTNYIAGTPDIPGGGAELGIEPGTIGPEAAAREAMAYTFFHWGLHAWAIYGALVGLALAYFAYRRKGLPGEKDEEDEEDEEDKGELLISSALRYPLLGDEKKRRIYGPASRVIGKAIDILAVFATVFGVATSLGLGVLQ----------INAGLSYLFPGADDDDDWIMDPPENAGSGSLSLTVAQLIIIAIITALATISAVSG-LDKEVGIKRLSNLNMVLALLLLLFVLIVGPMTLFILNTFVQSLGDYLQNFLSISFGAYGPQDVRMSFRTGAADPLGRFGGLGTDGDDGAGDALRGGATNAWGSFEGFKSGLEGEAAALSDEVLAAAYAAGEPGALAEWLGGWTIFYWAWWIAWAPFVGMFIARISRGRTIREFVLGVLLVPTLFTFLWFSVFG------GTAILAEQLDRQTDLELSASWNNGGGGDLADDKAKYAAGTVLVLVAADVVEAALFALLEQLLFRLNLGGADMSGPLGTILALLASVLAIVLIIIFFVTSADSATLVLAMLTSGGLDSDLDLNPPRWQRVFWGVLLGAVAAVLLLLAGEGGTKGDADALDALQTASIIAALPFSVILLLMCISLDFLQIQWVGALVIILYFCCFTLKALREE   HMMER2[PF02028.12_BCCT_seed]
QUERY    LF------LSILIGMTA-----LI------------------------------------------VWAEYKI-GG-------KFFKYV-------PAIVLIYLGAA-----FMNTF---------------G--LFG------DSES--LSNT-SYGVRNA-----LLPAMIL-------LMLLQCDLRKII--------------------------KLGPK--LLITYF-----------VAAFSIVLGF--TLTYLVMQSFFLDDTWRAFSALAGSWT-G-------G---S-A------N-MVALQDILAVPETIFGYALIMDTINY---------------SFWVMVMFWLVP-FERMFNRWTKADTSKLESM---------SQEIAATVTD---EK---RE------PTT-------------------------------------------------FVH---------------------------------MIGLLGF-SLFIAALATVIGENLPQIGTGI---------NAMT---WTILIV-SIVG-----L-------------------LLALT-------------PFASIP----GSMDIGRVMLYTI---------VAIIASG----AD-----------------------FSSI--GE-------IP----VYIIAGFMVLLFHGLILFGF---------------------AKLFKLD   Q9K8K1|Unknown|Q9K8K1_BACHD[7 330]


PF13303.1_PTS_EIIC_2_seed:
E:6.49e-02[Original]   E:7.45e-04[Fold-critical]   E:4.41e-11[Remnant]   Ratio[FC/R]:1.69e+07   Classification:TP
 STRUCT   CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC1111111111H-------------------HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEE---------------------------EECCCCHHHHHH-HHHHHHHHHHHH11111111111EEEHHHHHHHHHHHHHHH1HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCH1HHHHHHHHHHCCCC---------------------HHHHHHHHHHHHHHH11HHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHCCH1H-HHHHHHHHHHHHHHHHHH1--------------------------HHHHHHHHH11------------------H11HH1HHHHHHHHHHHHHHHHHHHHHHH------------------------HHHH11111111111   PredictedSECSTR
MODEL    IKVLNGMALGIFVTLIPGAILGTIGKLLGILFPIFALALVSSTGELAAKVAGLSMLNRFCWFLVQIGTLAQSLLGPAIGVAVAYQLKANPLVSFSAGIAGFIGSGAVKFVQTASVATATKTATGGVNATEGGVVDPLAGTGDPINAFI-AAAIAVLVGKLISKNLGGKTKLDIILVPIVVILVGGLIGLLVILPYVKPITTAIGNVINSATDLQPLLMGILIAVIFGILITSPFISSAAIAIALGLTGFGVGNALAIPDPIAIVWNGLALAAGAAAIGCCAQMVMNGLAVASLKVNGLGGLIAQGLGTPKLQMPNILKNPIPI-LLPPLLAAAILGPIATLLFDGYQWFIGIQPNGTPASAVWAGFGTSGLVGPIAALNLMAVNGTVRDVADKMAGTGPSAGTVILLIILVFFVLPAVLALLIYKLFKGFAKKDYKLDEIPTNEINEKNDDIKKLGLIKPGDTLKL   HMMER2[PF13303.1_PTS_EIIC_2_seed]
QUERY    LESMS----------------QEIAATVTD-----------E--------------KREPTTFVHMIGLLGFSL-------------------FIAALATVIG--------------------------ENLPQ---IGTG--INAMTWTILIVSIVGLLLA------------LTPFASIPGSMDIGRV--------MLYTIVAIIASGAD-------------FSSIGEIP---------------VY----------------------------IIAGFM--VLLFH--------GLILFGF----------AKLFK-LDLFTLGVAS-----LANIG--------GMV--SAPVLA------------------------------------GA--FN--RALIPVGVIMALIGGFMG-----------------------------TWFGVLTAEI-LSR   Q9K8K1|Unknown|Q9K8K1_BACHD[195 387]


PF03806.8_ABG_transport_seed:
E:1.30e-02[Original]   E:3.08e-05[Fold-critical]   E:2.86e-23[Remnant]   Ratio[FC/R]:1.08e+18   Classification:TP
 TM       --------------------------------------------------------------------------------------------ccccccccccccccccc--------------------ccccccccccccccccc-ccccccccccccccccc------cccccccccccc---ccccccccccc----------------------------ccccccccccccccccccc---------------------------------------------ccccccccccccccccccc----------------------------------------------------------------cccccccccccccccccccc----------------------------------------------ccccccccccccccccccc-----------cccccccccccccccccccc--------------------------------------------------   TMSOC
STRUCT   CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH----------------------------------EEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC-CCCEEECCCHHHHHHHHHCCCCHHHHHHHHH------------------1HHHHCCCHHHHHH111111111111HHHHHHHHHHHHHHHHHHHHH111111111--------------------------HH----HHHHHHHHHHHHHHHHH1HHHH111----------------1HHHHHHHHHHHH--HHHCCEEEEEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH1111111111111HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH1H111111111111   PredictedSECSTR
MODEL    RFLNFVERLGNKLPDPVTLFIILIVLLLVASAILSAFGV-----SVVNPRTGGTKGRFGELEAGDQTIEVKNLLSGEGLALILTNMVKNFTSFAPLGLVLVVMLGVGVAERSGLLSALMRKLVNKAPKKLITPTVVLIGILSHTAS-DAAYVVLIPLAAMIFIALGRHPLAGLAAAFAGVSG---GFSANLLLGTLDPLLAGFTQTAAQIIDPSYAEVVNPLMNWYFIAASVVVLTPIGWFVTDKIVEPRLGPY----KGSLDADEKEELASDELTAEEK----KGLRWAGIAFVVLIALLAALTVIPENGPLRDPETGSVADGSPFMKSIVPLIMLL--FLVPGLVYGRVTGTIKNSKDVVNMMAESMSSMGTYIVLAFFAAQFVAMFNWSNLGPILAVKGAEFLKAIGLPGIPLLLGFILLSAFINLLIGSASAKWAILAPIFVPMLMLLGYSPEFTQAAYRIGDSITNIITPLMSYFPLVLAFAQKYDKKMGIGTLISLMLPYSIAFLIVWILLLLVWVLVLGLPLGPGAPIHY   HMMER2[PF03806.8_ABG_transport_seed]
QUERY    -------KIGGK----FFKYVPAIVLIYLGAAFMNTFGLFGDSESLSNT-----------------SYGVRN--------ALLPAMILLM-----------------------LLQCDLRKIIKLGPKLLITY---FVAAFSIVLGFTLTYLV---MQSFFLDDTWR--------AFSALAGSWTGGSANM-VALQDILAVPETIFGYALIMDTI--------NYSFWVMVMFWLVPF---------ERMFNRWTKADTSKLESMSQEIAAT--VTDEKREPTTFVHMIGLLGFSLFIAAL--ATVIGENLPQIGTGINAMT-WTILIVSIVGLLLALTPFA-----------SIPGSMDIGRVMLYTIVA-------------------------IIA-SGADF-SSIGEIPVYIIAGFMVL-----LFHG----------------LILFGFAKLFKLDLFTLGVASLANIGGMVS--APVLA-----------GAFNRALIPVGVIMALIGG-FMGTWFGVL------TAEILS   Q9K8K1|Unknown|Q9K8K1_BACHD[25 386]


PF01654.12_Bac_Ubq_Cox_seed:
E:4.01e-02[Original]   E:5.70e-04[Fold-critical]   E:7.15e-19[Remnant]   Ratio[FC/R]:7.97e+14   Classification:TP
 TM       -------cccccccccccccccccccccccc--cccc-------------------------ccccccccccccccccccccccc---------------ccccccccccccccccccccccccccc---------ccccccccccccccccccccccccccc----------------------------------------------------------------------------------ccccccccccccccccccccccccc------------------------------------------------------ccccccccccccccccccccc---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccccccccccccccccccccccccc---ccc----------------------------------------cccccccccccccccccccccccccc-------------------------------------------------------ccccccccccccccccccccccccccc-------------   TMSOC
STRUCT   CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH11HHHHHH11111111111HH1111HHHHHHHHHHHHHHHHHHHHHCCCEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC11CC1CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC1CCCCE11EE1--------------11111EEEE111CCHHHH-----------------------------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH1--------------------------1111111111111111H1HHH1111HHHHHHHHHHHHHHHHHHH1HHHHHHHHHHHHCHHHHHHHHH11111111------------11111111111111111EEEEE11111111111111111111111EE1EECCCHHHHHH-------------------1111111111111111111-------------------------------------------1111111CCC1111111111111111111111111111-----------------1111111111111111111111111111111111111HHHHHHHHHHHHHHHH1HHHHHHHH11111HHHH1H----------------------------------1HHHHHHHHHHHHH1HHHHHHHH1HHHHHCCCCCEE-EE1----------------11111111111111-----------HHHHHHHHHHHHHHHH1HHHH1HHHHHHHHHHH1111HCCCC   PredictedSECSTR
MODEL    LSRLQFAFTASFHFLFVPLTIGLALLLAIMEFMTLYVRTGARTAPGDRADEVRKILYKRMTKFWGKLFAINFAMGVVTGIVMEFQFGTNWSGYSRFVGDIFGAPLAIEGLTAFFLEATFLGLMLFGWDNKRVKSKKLHLLATWLVAIGTNLSAFWILAANSWMQMTPVGYGPEINGIYPFMPEFGGLEPETADGRAELDGVTDFWAVASYLVIQAIIQNPEVAGKVGVIKTDDAVAIFNPSAPYRFVHTVLAAYLTGAFFVAGISAWYLLRARREGDTTVDADGKVVVGEEAPDDAREEGGRKSAEAHVGEAKVEDFARQAVCKSFRIALWFGLIAAPLQIVPLGDLSGLNVAEHQPMKLAAMEGLWDETMDTDQTDKDGLTADEEAAYNPGAGAVAYGDPPLSLFGIPDEPLLEAENSCRGDDAEEANHFAAIEIPYLLSLLAATAKQVGVKVGSEEIQNAWTLKHSLDGVEVKNGLKDLQYGNEKKDGTRDPNLAYYRDIKTGQTADVSPEDAAADPSDEKGIAEPEEKIFPGIIAYDALEKLRAAKKDPAARAAFEAHKNDEATQKAAKEDKYKVGVDLGYGLLLKRYTDDVVKATPEQIAKAAKDYRPHPRVAPVFWSFRIMVGLGFLMGLLLALLGLLGKAVWLRRRRKKKGRLPDKRGRLAPSLEVPHLVLFKNKVDRIYESRWLLRLALLMIPLFPFIANEAGIWIVTEVGRQPWT-VYGNPTGSNGGPPTGVDVVLIQDGVEMIGLRTADAVLSPGYSLSAGQVLFSLIGFVLLYTPVLFVYAEVYLLLRYIRYLFRKGPEE   HMMER2[PF01654.12_Bac_Ubq_Cox_seed]
QUERY    -------------FLFLSILIGMTALIVWAE------------------YKI--------------------------------------------------------G------------------G--KF---FKYVPAIVLIYLGA-----------AFMN-T----FGLF--------------GDS--ESLSN---TSYG-------------------------------VRNALLPAMILLMLLQCDL-----------RKIIK----------------------------LGPKL---LI-----T-YFV----AAFSIVLGFTLTYLVMQSF-FLDDTWRA--------FSALAGSW-T---G---GSANMVALQDI----LA---V----PETIFGYA--LIMD-----T-------INYS-FWV--MVMFWL---------VPFERMFNRWT--KADTS-KLE-SMSQ-----------------------------------------EIAATVTDEKR--------------------------------------------------------------------------------EP-TTFVH-----MIGLLGFS-LFIAALAT-----V--I-G---ENLP-QIGTG---------------------INAMTWTILIVSIV-GLL-----LALT------PFASIPG---------SMDIGRVM---------LYTIVAI------IASGA-DFSSIGEIPVYI--IAG-FMVLLFHGLIL----FGFAK   Q9K8K1|Unknown|Q9K8K1_BACHD[6 325]


PF01970.11_TctA_seed:
E:9.36e-02[Original]   E:8.36e-04[Fold-critical]   E:1.50e-13[Remnant]   Ratio[FC/R]:5.57e+09   Classification:TP
 TM       ----cccccccccccccccccccccccccccccccccccccccccc--------ccccccccccccccccccccccccccc--------------------------cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc----cc-------------cccccccccccccccccccccc--------------------cccccccccccccccccccccccc------------------------------------------------------------------cccccccccc-----ccccccccccccccc---------------------------------------------------------------------cccccccccccccccccccccccccccc------------------ccccc----ccccccccccccccccccccccc--------ccccccccccccccccccccccc-----cccccccccccccccccccccccc---------ccccc---------   TMSOC
STRUCT   CHHHHHHH1HHHHHHHHCCCCCCHHHHHHHHHHH1-------------------HHHHHHHH1HHHHHHHHHCCHHHHHHCCCCCCHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHH1111HHHHHHHHHHHHHHHHH1CCCHHH-HHHHHHHHH1HHHHHCCC1C1HH1111111111111HHHHHHHHHHHHHHH1111111111111111-----------1111111HHHHHHHHHHHHHHHHH1111H1---------------------------1------------------HHHHHHHHHHHH1HHHHHHHHHHH-----CCCCCHHHHHHHHHH------------------------HHHH1H1111-------------------EECCCCCHHH111HHHHHHHHHHHCCCCCCHHHHHHHHHHHH--------------11HH11HHHHH----HHHHHHHHHHHHHHHHHH1HH1H1HHH1HHCCCHHHHHHHHHHHHHHHHHHCC1111CCH1HHHHHHHHHHHHHHHHHHCCCC11111111111111111111111   PredictedSECSTR
MODEL    NLLLLLLGAVLLGTIVGALPGLGATMAVALLLPFTFGLGMLEKGLDAGLPTEAAPVSALILLAAGIYYGAIYGGSIPAILLNIPGTPASAATTLDGYPMAKQGRAGRALGLAAIASFIGGLIGILILALLLILLAPPLAKVALKAFGPAEY-FALALLGLTSLIASLSGGGSGLLEKSVSERLLSKYRKGLIAALLGLLLGTVGLDPITGSVPRFITFGIPLGMEYQSYELLGDGISLVPVLIGLFAISEVLRLLERALEKRDEEEETEKEKPKELASYRGGSVPKQKIAGSEGSGLFLPTLGGFSRKELRRSWKAILSRGSLIGTFIGI-----LPGAGATIASFLAYAFVRSDFDRIPLKKKDSEPVLGKEKEAKRLVSSEKNPEEAKDPFIIGKKGAIEGVAAPEAANNALYYAAGGALIPLLTLGIPGSAVTAILLGALLIHGSGELQPGPLLFTENPDLVLVWGL----IASLLIANLLLLILGLPLAIRPLAFARILLRIPYRILYPIILVFCIVGAYAINYLYKNSMIFDVWVMLGFGVLGYLMRKLGFPRSNLLMGVLLAPLIRLSDLRCHL   HMMER2[PF01970.11_TctA_seed]
QUERY    TYFVAAFS-IVLGF----------TLTYLVMQS--FF--L-----D---DTWRA---------FSALAGSWTGG------------SANMVALQD-------------------------ILA----------VPETIFGYALI-MDTINYSFWVMVM-FW-LVPFE----R-MF---------NRWTKADTSKL----------ESMSQ-EIAA-TV-TD--------EKR-EPTTFVH-MIGLLGFSLFIAA----L------------------A----TVIGENL----PQ-I---------GTGINAMTWTIL-IVSIVGLLLALTPFASIPG-SMDIGRVMLYT------------------------IVAI-IASGADFS--S--I--GE--IPVYIIA---------------------------GFMVLLFHGLILFG---FA-------------KLFKLDLFTLGVASLANIGGMVSAPVL-AG-A-FNR--------ALIPVGVIMALIGGFMGT-------WFGV----------------------------LTAEI--------L   Q9K8K1|Unknown|Q9K8K1_BACHD[97 385]


PF11299.3_DUF3100_seed:
E:9.08e-03[Original]   E:4.05e-04[Fold-critical]   E:2.85e-16[Remnant]   Ratio[FC/R]:1.42e+12   Classification:TP
 TM       -------------------cccccccccccccccccccc--------------------ccccccccccccccccc-ccccc-------------ccccccccccccccccccccccccc--------------------------------cccccccccccccccccccccccccccc------cccccccccccccccccc--cccccc-----------ccccccccccccccccccccccccc--------   TMSOC
STRUCT   CEEEE1EECEEEEEECCE1EHHHHHHHHHHHHHHHH----------------1111HHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHH-HHHHHHHHHHH1HHHHHHHHHH1HHH111111111111111111EEEEEE11111111111EHHHHHHHHHHHHHHHHHHHHHHHCCCC1CCHHHHHHHCCCCHHHHHHHHH--HHHHHHC1C1CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC   PredictedSECSTR
MODEL    VVIAEVLIGVVKIPLGPGFSIVLLPMLYALLIGLALGLAKLGKKRKPLKKVISDKQSKFASALLLLALLLLIAKLG-TTVGPNLPKILAAG-PALILQEFGNLVGTILLALPVAVLLLGLKREAIGATFSIGREPNLAIISEKYGLDSPEGRGVLAVYIIGTVFGTIFFSLLASFLASLGIFFHPYALAMASGVGSGSMMAAAS--GALAAAYTPAEMADQILAFAAASNLLTTVTGVYVSLFIALPLAEKLYKKL   HMMER2[PF11299.3_DUF3100_seed]
QUERY    AALAT-VIGENLPQIGTG----INAMTWTILIVSIVGLLLA------LTPFASIPGSMDIGRVMLYTIVAIIASGADFSSIGEIPVYIIAGFMVLLFH------GLILFGF--A-KLFKL---------------------DLFTLG------------------------VAS-LANIGG-----------------MVSAPVLAGAFNRALIP---VGVIMA------LIGGFMGTWFGVLTA--------EIL   Q9K8K1|Unknown|Q9K8K1_BACHD[230 385]


User sequence
Q9K8K1|Unknown|Q9K8K1_BACHD
MIENGFLFLSILIGMTALIVWAEYKIGGKFFKYVPAIVLIYLGAAFMNTFGLFGDSESLSNTSYGVRNALLPAMILLMLLQ
QCDLRKIIKLGPKLLITYFVAAFSIVLGFTLTYLVMQSFFLDDTWRAFSALAGSWTGGSANMVALQDILAVPETIFGYALI
IMDTINYSFWVMVMFWLVPFERMFNRWTKADTSKLESMSQEIAATVTDEKREPTTFVHMIGLLGFSLFIAALATVIGENLP
PQIGTGINAMTWTILIVSIVGLLLALTPFASIPGSMDIGRVMLYTIVAIIASGADFSSIGEIPVYIIAGFMVLLFHGLILF
FGFAKLFKLDLFTLGVASLANIGGMVSAPVLAGAFNRALIPVGVIMALIGGFMGTWFGVLTAEILSRL

Main reference
1) Wing-Cheong Wong, Sebastian Maurer-Stroh, Birgit Eisenhaber, Frank Eisenhaber, 2014, The necessity of dissecting similarity scores for inferring homology: an essential issue in protein function prediction and annotation , BMC Bioinformatics, 15(1):166, doi:10.1186/1471-2105-15-166

Relevant references
1) Wing-Cheong Wong, Sebastian Maurer-Stroh, Georg Schneider, Frank Eisenhaber, 2012, Transmembrane helix: simple or complex , Nucleic Acids Research (Web Server issue), doi:10.1093/nar/gks379

2) Wing-Cheong Wong, Sebastian Maurer-Stroh, Frank Eisenhaber, 2011, Not all transmembrane helices are born equal: Towards the extension of the sequence homology concept to membrane proteins , Biology Direct, 6(57), doi:10.1186/1745-6150-6-57

3) Wing-Cheong Wong, Sebastian Maurer-Stroh, Frank Eisenhaber, 2011, The Janus-faced E-values of HMMER2: Extreme value distribution or logistic function , Journal of Bioinformatics and Computational Biology, 9(1), doi:10.1142/S0219720011005264

4) Wing-Cheong Wong, Sebastian Maurer-Stroh, Frank Eisenhaber, 2010, More than 1001 problems with protein domain databases: transmembrane regions, signalpeptides and the issue of sequence homology , PLoS Computational Biology, 6(7), doi:10.1371/journal.pcbi.1000867

Contact
wongwc@bii.a-star.edu.sg


24-03-2015 17:37:38 Copyrights Bioinformatics Institute A*STAR