{"text_format":"3","workbook":"xlsx","n_sheets":2,"sheets":["All Assembly FPKM","Normalized FPKM"],"read":"whole","date_system":"1900"}

{"sheet":"All Assembly FPKM","index":0,"n_rows":35128,"n_cols":20,"rows_kept":4500,"cut":true,"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
["Additional file 1. FPKM values of all transcripts on the different substrates tested. For each substrate, two FPKM values from two separate growth experiments as well as the average FPKM values are shown."]
["Glucose","FPKM Read 1","FPKM Read 2","Glucose Average","Alfalfa","FPKM Read 1","FPKM Read 2","Alfalfa Average","gene_id","FPKM Read 1","FPKM Read 2","Energy Cane Averages","CornStover","FPKM Read 1","FPKM Read 2","CornAverage","Sorgrum","FPKM Read 1","FPKM Read 2","Sorgrum Average"]
["comp100033_c0_seq1",13.65,6.67,{"$f":"AVERAGE(C3,B3)","v":10.16},"comp100033_c0_seq1",1.29,0.89,1.09,"comp100033_c0_seq1",7.33,7.35,{"$f":"AVERAGE(J3:K3)","v":7.34},"comp100033_c0_seq1",8.96,8.57,{"$f":"AVERAGE(N3:O3)","v":8.765},"comp100033_c0_seq1",6.08,6.61,{"$f":"AVERAGE(R3:S3)","v":6.345000000000001}]
["comp100039_c0_seq1",2.34,0.45,{"$f":"AVERAGE(C4,B4)","v":1.395},"comp100039_c0_seq1",0.99,0.84,0.915,"comp100039_c0_seq1",6.93,4.81,{"$f":"AVERAGE(J4:K4)","v":5.869999999999999},"comp100039_c0_seq1",4.76,4.2,{"$f":"AVERAGE(N4:O4)","v":4.48},"comp100039_c0_seq1",6.57,10.97,{"$f":"AVERAGE(R4:S4)","v":8.77}]
["comp10004043_c0_seq1",0,0.16,0.08,"comp10004043_c0_seq1",0,0,0,"comp10004043_c0_seq1",0,0,0,"comp10004043_c0_seq1",0,0,0,"comp10004043_c0_seq1",0,0,0]
["comp100145_c0_seq1",12.94,6.46,9.7,"comp100145_c0_seq1",8.75,3.95,6.35,"comp100145_c0_seq1",12.77,13.61,13.19,"comp100145_c0_seq1",3.25,0.45,1.85,"comp100145_c0_seq1",2.83,5.74,4.285]
["comp100179_c0_seq1",2.53,1.06,1.795,"comp100179_c0_seq1",1.7,1.37,1.5350000000000001,"comp100179_c0_seq1",3.46,4.95,4.205,"comp100179_c0_seq1",9.09,10.28,9.684999999999999,"comp100179_c0_seq1",5.83,6.74,6.285]
["comp10022846_c0_seq1",0,0,0,"comp10022846_c0_seq1",0,0,0,"comp10022846_c0_seq1",0,0,0,"comp10022846_c0_seq1",0,0,0,"comp10022846_c0_seq1",0,0,0]
["comp10023067_c0_seq1",0,0,0,"comp10023067_c0_seq1",0,0,0,"comp10023067_c0_seq1",0,0,0,"comp10023067_c0_seq1",0,0,0,"comp10023067_c0_seq1",0,0,0]
["comp10023615_c0_seq1",0,0,0,"comp10023615_c0_seq1",0,0,0,"comp10023615_c0_seq1",0,0,0,"comp10023615_c0_seq1",0,0,0,"comp10023615_c0_seq1",0,0,0]
["comp10023863_c0_seq1",0,0,0,"comp10023863_c0_seq1",0,0,0,"comp10023863_c0_seq1",0,0,0,"comp10023863_c0_seq1",0,0,0,"comp10023863_c0_seq1",0,0,0]
["comp100270_c0_seq1",1.31,0.57,0.94,"comp100270_c0_seq1",1.1,0.66,0.8800000000000001,"comp100270_c0_seq1",4.25,4.37,4.3100000000000005,"comp100270_c0_seq1",2.65,2.08,2.365,"comp100270_c0_seq1",1.3,2.9,2.1]
["comp1003855_c0_seq1",0,0,0,"comp1003855_c0_seq1",0,0,0,"comp1003855_c0_seq1",0,0.22,0.11,"comp1003855_c0_seq1",0,0,0,"comp1003855_c0_seq1",0.13,0,0.065]
["comp10041115_c0_seq1",0,0,0,"comp10041115_c0_seq1",0,0,0,"comp10041115_c0_seq1",0,0,0,"comp10041115_c0_seq1",0,0,0,"comp10041115_c0_seq1",0,0,0]
["comp100447_c0_seq1",8.19,1.51,4.85,"comp100447_c0_seq1",6.89,6.89,6.89,"comp100447_c0_seq1",4.21,4.94,4.575,"comp100447_c0_seq1",13.68,15.45,14.565,"comp100447_c0_seq1",8.73,7.93,8.33]
["comp1004503_c0_seq1",0,0,0,"comp1004503_c0_seq1",0,0,0,"comp1004503_c0_seq1",0.38,0,0.19,"comp1004503_c0_seq1",0,0,0,"comp1004503_c0_seq1",0,0.13,0.065]
["comp1004595_c0_seq1",0,0,0,"comp1004595_c0_seq1",0,0,0,"comp1004595_c0_seq1",0,0,0,"comp1004595_c0_seq1",0,0.17,0.085,"comp1004595_c0_seq1",0,0.68,0.34]
["comp10050316_c0_seq1",0,0,0,"comp10050316_c0_seq1",0,0,0,"comp10050316_c0_seq1",0,0,0,"comp10050316_c0_seq1",0,0,0,"comp10050316_c0_seq1",0,0,0]
["comp1005244_c0_seq1",0.3,0.24,0.27,"comp1005244_c0_seq1",0,0,0,"comp1005244_c0_seq1",0,0.26,0.13,"comp1005244_c0_seq1",0.22,0.41,0.315,"comp1005244_c0_seq1",1.63,0.97,1.2999999999999998]
["comp1005398_c0_seq1",0.16,0,0.08,"comp1005398_c0_seq1",0,0.32,0.16,"comp1005398_c0_seq1",0,0.13,0.065,"comp1005398_c0_seq1",0,0,0,"comp1005398_c0_seq1",0,0.08,0.04]
["comp100549_c0_seq1",3.13,1.46,2.295,"comp100549_c0_seq1",6.84,4.89,5.865,"comp100549_c0_seq1",18.56,13.04,15.799999999999999,"comp100549_c0_seq1",5.08,2.72,3.9000000000000004,"comp100549_c0_seq1",10.54,15.34,12.94]
["comp1005654_c0_seq1",0,0,0,"comp1005654_c0_seq1",0,0,0,"comp1005654_c0_seq1",0,0,0,"comp1005654_c0_seq1",0,0,0,"comp1005654_c0_seq1",0,0,0]
["comp100567_c0_seq1",0.98,1.35,1.165,"comp100567_c0_seq1",4.23,1.97,3.1,"comp100567_c0_seq1",4.12,4.06,4.09,"comp100567_c0_seq1",2.39,1.94,2.165,"comp100567_c0_seq1",2.42,4.75,3.585]
["comp100568_c0_seq1",3.63,1.93,2.78,"comp100568_c0_seq1",2.94,3.21,3.075,"comp100568_c0_seq1",7.67,6.09,6.88,"comp100568_c0_seq1",9.53,9.97,9.75,"comp100568_c0_seq1",9.43,12.07,10.75]
["comp100571_c0_seq1",11.03,3.21,7.119999999999999,"comp100571_c0_seq1",9.9,12.37,11.135,"comp100571_c0_seq1",9.88,11,10.440000000000001,"comp100571_c0_seq1",7.02,6.73,6.875,"comp100571_c0_seq1",6.19,6.28,6.235]
["comp100614_c0_seq1",3.13,1.59,2.36,"comp100614_c0_seq1",2.1,1.15,1.625,"comp100614_c0_seq1",9.53,6.65,8.09,"comp100614_c0_seq1",3.37,2.32,2.8449999999999998,"comp100614_c0_seq1",2.55,4.98,3.765]
["comp10064700_c0_seq1",0,0,0,"comp10064700_c0_seq1",0,0,0,"comp10064700_c0_seq1",0,0,0,"comp10064700_c0_seq1",0,0,0,"comp10064700_c0_seq1",0,0,0]
["comp1006502_c0_seq1",0,0.64,0.32,"comp1006502_c0_seq1",0,0,0,"comp1006502_c0_seq1",0.12,0,0.06,"comp1006502_c0_seq1",0.12,0,0.06,"comp1006502_c0_seq1",0,0,0]
["comp1006551_c0_seq1",0,0,0,"comp1006551_c0_seq1",0,0.47,0.235,"comp1006551_c0_seq1",0,0,0,"comp1006551_c0_seq1",0,0,0,"comp1006551_c0_seq1",0,0,0]
["comp10066287_c0_seq1",0,0,0,"comp10066287_c0_seq1",0,0,0,"comp10066287_c0_seq1",0,0,0,"comp10066287_c0_seq1",0,0,0,"comp10066287_c0_seq1",0,0,0]
["comp1006641_c0_seq1",0,0,0,"comp1006641_c0_seq1",0,0,0,"comp1006641_c0_seq1",0,0,0,"comp1006641_c0_seq1",0.13,0.06,0.095,"comp1006641_c0_seq1",0.18,0.24,0.21]
["comp10067751_c0_seq1",0,0,0,"comp10067751_c0_seq1",0,0,0,"comp10067751_c0_seq1",0,0,0,"comp10067751_c0_seq1",0,0,0,"comp10067751_c0_seq1",0,0,0]
["comp100685_c0_seq1",2.92,1.41,2.165,"comp100685_c0_seq1",1.1,0.84,0.97,"comp100685_c0_seq1",6.55,4.79,5.67,"comp100685_c0_seq1",9.11,8.66,8.885,"comp100685_c0_seq1",7.35,11.98,9.665]
["comp100715_c0_seq1",1.61,0.57,1.09,"comp100715_c0_seq1",2.85,2.69,2.77,"comp100715_c0_seq1",6.26,5.77,6.015,"comp100715_c0_seq1",6.86,2.75,4.805,"comp100715_c0_seq1",8.26,11.28,9.77]
["comp1007347_c0_seq1",0,0,0,"comp1007347_c0_seq1",0,0,0,"comp1007347_c0_seq1",0.19,0,0.095,"comp1007347_c0_seq1",0,0.09,0.045,"comp1007347_c0_seq1",0,0,0]
["comp1007640_c0_seq1",0.12,0,0.06,"comp1007640_c0_seq1",0.37,0.13,0.25,"comp1007640_c0_seq1",0.36,0.32,0.33999999999999997,"comp1007640_c0_seq1",0,0,0,"comp1007640_c0_seq1",0,0,0]
["comp1007675_c0_seq1",0.2,0.8,0.5,"comp1007675_c0_seq1",0.3,0,0.15,"comp1007675_c0_seq1",0,0,0,"comp1007675_c0_seq1",0,0.14,0.07,"comp1007675_c0_seq1",0.11,0.16,0.135]
["comp1007956_c0_seq1",0,0,0,"comp1007956_c0_seq1",0,0,0,"comp1007956_c0_seq1",0.24,0.1,0.16999999999999998,"comp1007956_c0_seq1",0.25,0,0.125,"comp1007956_c0_seq1",0,0.24,0.12]
["comp100810_c0_seq1",2.47,1.38,1.925,"comp100810_c0_seq1",5.24,2.67,3.955,"comp100810_c0_seq1",6.49,8.78,7.635,"comp100810_c0_seq1",7.17,7.12,7.145,"comp100810_c0_seq1",7.34,9.85,8.594999999999999]
["comp1008855_c0_seq1",0.13,0,0.065,"comp1008855_c0_seq1",0.19,0.38,0.28500000000000003,"comp1008855_c0_seq1",0.36,0.21,0.285,"comp1008855_c0_seq1",0.19,0.08,0.135,"comp1008855_c0_seq1",0.19,0.07,0.13]
["comp100885_c0_seq1",2.15,0.81,1.48,"comp100885_c0_seq1",3.65,4.13,3.8899999999999997,"comp100885_c0_seq1",8.31,8.9,8.605,"comp100885_c0_seq1",7.12,7.05,7.085,"comp100885_c0_seq1",3.44,4.09,3.7649999999999997]
["comp101037_c0_seq1",2.49,0.9,1.695,"comp101037_c0_seq1",1.33,1.46,1.395,"comp101037_c0_seq1",5.49,4.33,4.91,"comp101037_c0_seq1",2.47,2.29,2.38,"comp101037_c0_seq1",6.14,6.28,6.21]
["comp101058_c0_seq1",15.25,9.82,12.535,"comp101058_c0_seq1",1.14,1.86,1.5,"comp101058_c0_seq1",4.85,5.37,5.109999999999999,"comp101058_c0_seq1",9.79,10.67,10.23,"comp101058_c0_seq1",4.58,5.31,4.945]
["comp101139_c0_seq1",0.67,1.07,0.8700000000000001,"comp101139_c0_seq1",5.19,4.87,5.03,"comp101139_c0_seq1",4.16,7.24,5.7,"comp101139_c0_seq1",5.29,4.52,4.904999999999999,"comp101139_c0_seq1",5.19,6.65,5.92]
["comp101144_c0_seq1",1.45,0.61,1.03,"comp101144_c0_seq1",1.83,1.62,1.725,"comp101144_c0_seq1",8.6,8.24,8.42,"comp101144_c0_seq1",5.07,4.4,4.735,"comp101144_c0_seq1",4.38,5.6,4.99]
["comp101149_c0_seq1",5.95,1.9,3.925,"comp101149_c0_seq1",3.71,3.78,3.745,"comp101149_c0_seq1",7.92,8.75,8.335,"comp101149_c0_seq1",7.55,7.09,7.32,"comp101149_c0_seq1",6.7,8.48,7.59]
["comp101190_c0_seq1",1.8,0.61,1.205,"comp101190_c0_seq1",0.17,0.27,0.22000000000000003,"comp101190_c0_seq1",4.47,3.52,3.995,"comp101190_c0_seq1",6.39,7.18,6.785,"comp101190_c0_seq1",6.35,9.72,8.035]
["comp101193_c0_seq1",3.16,1.02,2.09,"comp101193_c0_seq1",1.08,1.13,1.105,"comp101193_c0_seq1",5.12,4.33,4.725,"comp101193_c0_seq1",4.03,4.07,4.050000000000001,"comp101193_c0_seq1",3.73,5.03,4.38]
["comp10122736_c0_seq1",0,0,0,"comp10122736_c0_seq1",0,0,0,"comp10122736_c0_seq1",0,0,0,"comp10122736_c0_seq1",0,0,0,"comp10122736_c0_seq1",0,0.14,0.07]
["comp101230_c0_seq1",1.05,1.59,1.32,"comp101230_c0_seq1",4.5,2.76,3.63,"comp101230_c0_seq1",6.63,7.92,7.275,"comp101230_c0_seq1",10.7,10.85,10.774999999999999,"comp101230_c0_seq1",7.74,10.01,8.875]
["comp101279_c0_seq1",2.27,3.22,2.745,"comp101279_c0_seq1",4.61,1.88,3.245,"comp101279_c0_seq1",9.71,8.46,9.085,"comp101279_c0_seq1",7.04,1.61,4.325,"comp101279_c0_seq1",4.79,10.75,7.77]
["comp101304_c0_seq1",1.48,0.4,0.94,"comp101304_c0_seq1",2.38,1.12,1.75,"comp101304_c0_seq1",7.9,7.46,7.68,"comp101304_c0_seq1",2.9,0.79,1.845,"comp101304_c0_seq1",5.42,5.11,5.265000000000001]
["comp1013268_c0_seq1",0.53,0.1,0.315,"comp1013268_c0_seq1",0.58,0.13,0.355,"comp1013268_c0_seq1",0.38,0.67,0.525,"comp1013268_c0_seq1",0.49,0.35,0.42,"comp1013268_c0_seq1",0.07,0,0.035]
["comp101334_c0_seq1",1.84,0.54,1.19,"comp101334_c0_seq1",1.09,2.15,1.62,"comp101334_c0_seq1",14.19,6.89,10.54,"comp101334_c0_seq1",2.09,1.09,1.5899999999999999,"comp101334_c0_seq1",1.52,2.1,1.81]
["comp101358_c0_seq1",2.55,0.17,1.3599999999999999,"comp101358_c0_seq1",1.62,5.42,3.52,"comp101358_c0_seq1",4.42,3.17,3.795,"comp101358_c0_seq1",3.03,1.67,2.3499999999999996,"comp101358_c0_seq1",8.43,7.56,7.994999999999999]
["comp101410_c0_seq1",2.85,1.05,1.9500000000000002,"comp101410_c0_seq1",1.66,2.01,1.835,"comp101410_c0_seq1",8.94,6.61,7.775,"comp101410_c0_seq1",2.1,1.17,1.635,"comp101410_c0_seq1",2.24,3.5,2.87]
["comp101421_c0_seq1",0.7,0.56,0.63,"comp101421_c0_seq1",0.64,0.54,0.5900000000000001,"comp101421_c0_seq1",2.82,2.74,2.7800000000000002,"comp101421_c0_seq1",2.46,2.5,2.48,"comp101421_c0_seq1",2.57,3.24,2.9050000000000002]
["comp10143196_c0_seq1",0,0,0,"comp10143196_c0_seq1",0,0,0,"comp10143196_c0_seq1",0,0,0,"comp10143196_c0_seq1",0,0,0,"comp10143196_c0_seq1",0,0,0]
["comp101432_c0_seq1",1.3,1.39,1.345,"comp101432_c0_seq1",1.56,1.05,1.3050000000000002,"comp101432_c0_seq1",4.19,3.54,3.865,"comp101432_c0_seq1",1.62,1.71,1.665,"comp101432_c0_seq1",1.72,3.15,2.435]
["comp10143857_c0_seq1",0,0,0,"comp10143857_c0_seq1",0,0,0,"comp10143857_c0_seq1",0,0,0,"comp10143857_c0_seq1",0,0,0,"comp10143857_c0_seq1",0,0,0]
["comp1015207_c0_seq1",0.39,0.41,0.4,"comp1015207_c0_seq1",0.19,0,0.095,"comp1015207_c0_seq1",0.37,0.22,0.295,"comp1015207_c0_seq1",0.1,0.09,0.095,"comp1015207_c0_seq1",0,0,0]
["comp10160501_c0_seq1",0,0,0,"comp10160501_c0_seq1",0,0,0,"comp10160501_c0_seq1",0,0,0,"comp10160501_c0_seq1",0,0,0,"comp10160501_c0_seq1",0,0,0]
["comp1016432_c0_seq1",0,0,0,"comp1016432_c0_seq1",0.33,0.15,0.24,"comp1016432_c0_seq1",0.05,0.06,0.055,"comp1016432_c0_seq1",0,0.05,0.025,"comp1016432_c0_seq1",0.15,0.36,0.255]
["comp10167375_c0_seq1",0,0,0,"comp10167375_c0_seq1",0,0,0,"comp10167375_c0_seq1",0,0,0,"comp10167375_c0_seq1",0,0,0,"comp10167375_c0_seq1",0,0,0]
["comp101696_c0_seq1",1.54,0.96,1.25,"comp101696_c0_seq1",3.84,2.17,3.005,"comp101696_c0_seq1",14.98,12.98,13.98,"comp101696_c0_seq1",3.34,1.95,2.645,"comp101696_c0_seq1",3.56,7.31,5.435]
["comp101706_c0_seq1",5.45,2.24,3.845,"comp101706_c0_seq1",3.63,3.33,3.48,"comp101706_c0_seq1",8.8,6.15,7.4750000000000005,"comp101706_c0_seq1",6.16,6.66,6.41,"comp101706_c0_seq1",3.91,6.18,5.045]
["comp101798_c0_seq1",5.64,2.45,4.045,"comp101798_c0_seq1",9.19,7.84,8.515,"comp101798_c0_seq1",6.47,7.56,7.015,"comp101798_c0_seq1",4.52,4.14,4.33,"comp101798_c0_seq1",5.59,7.47,6.529999999999999]
["comp101867_c0_seq1",0.22,0.34,{"$f":"AVERAGE(C68,B68)","v":0.28},"comp101867_c0_seq1",12.34,12.04,12.19,"comp101867_c0_seq1",4.81,8.35,{"$f":"AVERAGE(J68:K68)","v":6.58},"comp101867_c0_seq1",8.75,7.28,{"$f":"AVERAGE(N68:O68)","v":8.015},"comp101867_c0_seq1",5.97,7.32,{"$f":"AVERAGE(R68:S68)","v":6.645}]
["comp101892_c0_seq1",4.01,1.62,2.815,"comp101892_c0_seq1",7.77,4.35,6.06,"comp101892_c0_seq1",5.98,8.03,7.005,"comp101892_c0_seq1",3.8,4.65,4.225,"comp101892_c0_seq1",4.36,4.09,4.225]
["comp101918_c0_seq1",0.7,1.19,0.945,"comp101918_c0_seq1",2.59,1.55,2.07,"comp101918_c0_seq1",3,3.17,3.085,"comp101918_c0_seq1",2.69,2.82,2.755,"comp101918_c0_seq1",2.35,4.69,3.5200000000000005]
["comp101990_c0_seq1",0.22,0.43,0.325,"comp101990_c0_seq1",0,0.22,0.11,"comp101990_c0_seq1",0.08,0.28,0.18000000000000002,"comp101990_c0_seq1",0.74,0.52,0.63,"comp101990_c0_seq1",0.34,0.18,0.26]
["comp102070_c0_seq1",0.71,0.49,0.6,"comp102070_c0_seq1",1.52,0.86,1.19,"comp102070_c0_seq1",4.55,4.01,4.279999999999999,"comp102070_c0_seq1",3.64,3.52,3.58,"comp102070_c0_seq1",4.45,4.69,4.57]
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["comp999928_c0_seq1",0,0,0,"comp999928_c0_seq1",0.31,0.21,0.26,"comp999928_c0_seq1",0,0.18,0.09,"comp999928_c0_seq1",0,0,0,"comp999928_c0_seq1",0,0,0]

{"sheet":"Normalized FPKM","index":1,"n_rows":35128,"n_cols":24,"rows_kept":2250,"cut":true,"bounds":{"rows_first":1000,"rows_last":250,"rows_between":1000,"halvings":1}}
["Additional file 2. Normalized FPKM values of all transcripts on the different substrates tested. For each substrate, two normalized FPKM values from two separate growth experiments as well as the average FPKM values are shown."]
["Gene","Glucose1","Glucose2","Glucose_Avg",null,"Gene","Alfalfa1","Alfalfa2","Alfalfa_Avg",null,"Gene","EnergyCAne1","EnergyCane2","EC_Avg",null,"Gene","CornStover1","CornStover2","CS_Avg",null,"Gene","Sorghum1","Sorghum2","Sorghum_Avg"]
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