Information for 8-CGGTATTA (Motif 10)


Reverse Opposite:

p-value:1e-28
log p-value:-6.515e+01
Information Content per bp:1.635
Number of Target Sequences with motif729.0
Percentage of Target Sequences with motif23.67%
Number of Background Sequences with motif6089.1
Percentage of Background Sequences with motif15.91%
Average Position of motif in Targets366.9 +/- 370.3bp
Average Position of motif in Background184.3 +/- 134.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CGGTATTA
NGGGATTA

PB0187.1_Tcf7_2/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CGGTATTA-------
CCGTATTATAAACAA

PB0185.1_Tcf1_2/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CGGTATTA--
TTGCCCGGATTAGG

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGGTATTA-
-RGGATTAR

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CGGTATTA--
VRGGATTARN

PH0139.1_Pitx3/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGGTATTA------
AGGGGGATTAGCTGCC

PB0106.1_Arid5a_2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CGGTATTA----
TNNTTTCGTATTNNANN

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGGTATTA------
TGTAGGGATTAATTGTC

PH0124.1_Obox5_1/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGGTATTA------
TAGAGGGATTAAATTTC

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CGGTATTA-----
TTAGAGGGATTAACAAT