Information for 14-GGCCAGGTGCCA (Motif 17)


Reverse Opposite:

p-value:1e-16
log p-value:-3.887e+01
Information Content per bp:1.831
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif54.6
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets280.5 +/- 260.2bp
Average Position of motif in Background221.4 +/- 139.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0119.1_TLX1::NFIC/Jaspar

Match Rank:1
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAGGTGCCA
TTGGCATGGTGCCA

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAGGTGCCA--
TTGGCANNNTGCCAAG

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGCCAGGTGCCA-
TGGCAGNCTGCCAG

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:GGCCAGGTGCCA-
-------TGCCAA

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GGCCAGGTGCCA
----AGGTGTCA

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGCCAGGTGCCA
-NNCAGGTGNN-

MA0524.1_TFAP2C/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGCCAGGTGCCA--
TGCCCTGGGGCNANN

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGCCAGGTGCCA
-KCCACGTGAC-

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGCCAGGTGCCA---
ATCCACAGGTGCGAAAA

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGCCAGGTGCCA
NNVVCAGCTGBN-