Information for 17-CTGCACGGGGCC (Motif 19)


Reverse Opposite:

p-value:1e-12
log p-value:-2.890e+01
Information Content per bp:1.888
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets318.5 +/- 298.9bp
Average Position of motif in Background198.0 +/- 98.2bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0155.1_INSM1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTGCACGGGGCC-
-TGTCAGGGGGCG

MA0104.3_Mycn/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTGCACGGGGCC
---CACGTGGC-

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGCACGGGGCC
---CACGTGGN-

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTGCACGGGGCC
--CCACGTGGNN

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTGCACGGGGCC
--CCACGTGGNN

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTGCACGGGGCC
--TCACGTGACC

PB0044.1_Mtf1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTGCACGGGGCC-
NNTTTGCACACGGCCC

PB0091.1_Zbtb3_1/Jaspar

Match Rank:8
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------CTGCACGGGGCC
AATCGCACTGCATTCCG--

MA0464.1_Bhlhe40/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTGCACGGGGCC
NTGCACGTGAG-

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGCACGGGGCC
-GTCACGTGGM-