Information for 2-TGCACAGC (Motif 2)


Reverse Opposite:

p-value:1e-40
log p-value:-9.221e+01
Information Content per bp:1.599
Number of Target Sequences with motif1279.0
Percentage of Target Sequences with motif41.53%
Number of Background Sequences with motif11549.9
Percentage of Background Sequences with motif30.17%
Average Position of motif in Targets405.0 +/- 367.0bp
Average Position of motif in Background186.1 +/- 149.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.58
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:TGCACAGC
--CACAGN

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TGCACAGC------
GAGCACAGCAGGACA

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.68
Offset:4
Orientation:forward strand
Alignment:TGCACAGC-
----CAGCC

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TGCACAGC
CCAGGAACAG-

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGCACAGC------
CCACACAGCAGGAGA

PB0026.1_Gm397_1/Jaspar

Match Rank:6
Score:0.66
Offset:-7
Orientation:reverse strand
Alignment:-------TGCACAGC--
NNGTATGTGCACATNNN

PH0158.1_Rhox11_2/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TGCACAGC-----
TCNCTTTACAGCGNNNT

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TGCACAGC-----
TCNNTTTACAGCGNNNT

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGCACAGC------
CCACACAGCAGGAGA

PB0104.1_Zscan4_1/Jaspar

Match Rank:10
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------TGCACAGC--
NTNTATGTGCACATNNN