Information for 18-CAAGGCCCATGT (Motif 21)


Reverse Opposite:

p-value:1e-11
log p-value:-2.741e+01
Information Content per bp:1.872
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets277.8 +/- 225.5bp
Average Position of motif in Background216.8 +/- 97.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAAGGCCCATGT
NTCAAGGTCA----

MA0147.2_Myc/Jaspar

Match Rank:2
Score:0.60
Offset:6
Orientation:forward strand
Alignment:CAAGGCCCATGT----
------CCATGTGCTT

MA0058.2_MAX/Jaspar

Match Rank:3
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CAAGGCCCATGT----
------CCATGTGCTT

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAAGGCCCATGT
BTCAAGGTCA----

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAAGGCCCATGT
CTAGGCCT----

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------CAAGGCCCATGT
CANAGNNCAAAGTCCA---

MA0114.2_HNF4A/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CAAGGCCCATGT
NAGNNCAAAGTCCAN--

MA0484.1_HNF4G/Jaspar

Match Rank:8
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CAAGGCCCATGT
AGAGTCCAAAGTCCA---

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAAGGCCCATGT
CNAGGCCT----

MA0505.1_Nr5a2/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAAGGCCCATGT
AAGTTCAAGGTCAGC--