Information for 19-TCTAGACAATAG (Motif 22)


Reverse Opposite:

p-value:1e-11
log p-value:-2.680e+01
Information Content per bp:1.722
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif1.43%
Number of Background Sequences with motif154.9
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets257.7 +/- 283.9bp
Average Position of motif in Background184.0 +/- 125.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCTAGACAATAG---
CTCACACAATGGCGC

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TCTAGACAATAG-----
NNTNNACAATGGGANNN

MA0040.1_Foxq1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCTAGACAATAG
AATAAACAATN-

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCTAGACAATAG---
TCACGGAACAATAGGTG

MA0077.1_SOX9/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TCTAGACAATAG
---GAACAATGG

MA0078.1_Sox17/Jaspar

Match Rank:6
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TCTAGACAATAG-
----GACAATGNN

MA0084.1_SRY/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCTAGACAATAG
-GTAAACAAT--

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TCTAGACAATAG
----RACAAWGG

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TCTAGACAATAG-
CAAATCCAGACATCACA

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCTAGACAATAG
-BCAGACWA---