Information for 20-CGTTGCATTCAT (Motif 23)


Reverse Opposite:

p-value:1e-9
log p-value:-2.227e+01
Information Content per bp:1.729
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif158.5
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets293.1 +/- 229.7bp
Average Position of motif in Background177.4 +/- 105.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CGTTGCATTCAT------
----ACATTCATGACACG

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGTTGCATTCAT---
NNCATTCATTCATNNN

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGTTGCATTCAT-----
GACCACATTCATACAAT

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGTTGCATTCAT--
CCATTGTATGCAAAT

PB0171.1_Sox18_2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGTTGCATTCAT---
GGACTGAATTCATGCC

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CGTTGCATTCAT
GGGATTGCATNN--

PH0037.1_Hdx/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGTTGCATTCAT----
AAGGCGAAATCATCGCA

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGTTGCATTCAT
NGATGACGTCAT

MA0133.1_BRCA1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CGTTGCATTCAT
GTGTTGN------

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CGTTGCATTCAT
NRRTGACGTCAT