Information for 22-CCAGGGCTTATT (Motif 25)


Reverse Opposite:

p-value:1e-9
log p-value:-2.173e+01
Information Content per bp:1.890
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif9.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets193.1 +/- 198.4bp
Average Position of motif in Background166.6 +/- 101.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCAGGGCTTATT
CNAGGCCT----

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCAGGGCTTATT
CTAGGCCT----

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCAGGGCTTATT
--NGGGATTA--

MA0524.1_TFAP2C/Jaspar

Match Rank:4
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------CCAGGGCTTATT
CATGGCCCCAGGGCA----

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CCAGGGCTTATT--
CGAACAGTGCTCACTAT

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCAGGGCTTATT--
ACCGTGACTAATTNN

MA0146.2_Zfx/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CCAGGGCTTATT
GGGGCCGAGGCCTG---

PH0098.1_Lhx8/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCAGGGCTTATT------
-CACCGCTAATTAGNNGN

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCAGGGCTTATT
ATGCCCGGGCATGT-

PH0130.1_Otx2/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCAGGGCTTATT----
TGTAGGGATTAATTGTC