Information for 23-GTTCACGGTTAA (Motif 26)


Reverse Opposite:

p-value:1e-8
log p-value:-1.869e+01
Information Content per bp:1.896
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets288.0 +/- 273.3bp
Average Position of motif in Background202.2 +/- 47.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0046.1_Mybl1_1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GTTCACGGTTAA---
NNANTAACGGTTNNNAN

PB0045.1_Myb_1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GTTCACGGTTAA---
NNNNTAACGGTTNNNAN

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GTTCACGGTTAA
--TGTCGGTT--

MA0030.1_FOXF2/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTTCACGGTTAA
NTTGTTTACGTTNN-

MA0069.1_Pax6/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GTTCACGGTTAA---
-TTCACGCATGAGTT

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GTTCACGGTTAA
--BRRCVGTTDN

PB0109.1_Bbx_2/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GTTCACGGTTAA
NNNNCTGTTAACNNTNN-

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTTCACGGTTAA
AGGTCAAGGTCA-

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTTCACGGTTAA
GGTTAAACATTAA

MA0017.1_NR2F1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTTCACGGTTAA
AGGTTCAAAGGTCA