Information for 21-GGAAGAATTG (Motif 29)


Reverse Opposite:

p-value:1e-4
log p-value:-9.596e+00
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.29%
Number of Background Sequences with motif21.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets252.4 +/- 195.9bp
Average Position of motif in Background208.7 +/- 79.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GGAAGAATTG---
NNNNNGAACAATTGANN

PB0175.1_Sox4_2/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GGAAGAATTG-------
GGAAAAATTGTTAGGAA

PB0070.1_Sox30_1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGAAGAATTG----
AATGAACAATGGAATT

PB0065.1_Sox15_1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GGAAGAATTG----
TAGTGAACAATAGATTT

PB0072.1_Sox5_1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GGAAGAATTG---
TTTAGAACAATAAAAT

PB0165.1_Sox11_2/Jaspar

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GGAAGAATTG-------
---AAAATTGTTATGAA

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGAAGAATTG
NGAAGC----

MA0077.1_SOX9/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGAAGAATTG
-GAACAATGG

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGAAGAATTG------
NANTGGAAAAANTGAGTCAN

MF0010.1_Homeobox_class/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGAAGAATTG
--AATAATT-