Information for 4-CTCTGCTCTGYT (Motif 5)


Reverse Opposite:

p-value:1e-38
log p-value:-8.760e+01
Information Content per bp:1.584
Number of Target Sequences with motif1032.0
Percentage of Target Sequences with motif33.51%
Number of Background Sequences with motif8878.1
Percentage of Background Sequences with motif23.19%
Average Position of motif in Targets382.0 +/- 353.3bp
Average Position of motif in Background186.6 +/- 149.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0512.1_Rxra/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTCTGCTCTGYT
NCTGACCTTTG--

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTCTGCTCTGYT
CCCCCTGCTGTG--

PB0091.1_Zbtb3_1/Jaspar

Match Rank:3
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CTCTGCTCTGYT
AATCGCACTGCATTCCG

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CTCTGCTCTGYT
----GCTCCG--

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CTCTGCTCTGYT-
CGAACAGTGCTCACTAT

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CTCTGCTCTGYT
TGACCTTTGCCCTA--

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTCTGCTCTGYT
---NGCTN----

MA0483.1_Gfi1b/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTCTGCTCTGYT--
---TGCTGTGATTT

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTCTGCTCTGYT
CTGACCTTTG--

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTCTGCTCTGYT
CTGTGGTTTN--