Information for 6-TCTGCCAACG (Motif 6)


Reverse Opposite:

p-value:1e-36
log p-value:-8.484e+01
Information Content per bp:1.618
Number of Target Sequences with motif559.0
Percentage of Target Sequences with motif18.15%
Number of Background Sequences with motif4005.4
Percentage of Background Sequences with motif10.46%
Average Position of motif in Targets383.5 +/- 389.7bp
Average Position of motif in Background184.0 +/- 144.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:TCTGCCAACG
--TGCCAA--

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.81
Offset:1
Orientation:forward strand
Alignment:TCTGCCAACG
-TTGCCAAG-

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TCTGCCAACG----
ACTATGCCAACCTACC

MA0133.1_BRCA1/Jaspar

Match Rank:4
Score:0.67
Offset:4
Orientation:forward strand
Alignment:TCTGCCAACG-
----ACAACAC

PB0044.1_Mtf1_1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TCTGCCAACG----
NNTTTGCACACGGCCC

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCTGCCAACG--
SCTGTCARCACC

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TCTGCCAACG
VGCTGWCAVB-

MA0597.1_THAP1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCTGCCAACG
-CTGCCCGCA

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TCTGCCAACG--------
--TGCCAAAATAAACANN

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TCTGCCAACG----
----CCAACTGCCA