Information for 4-CGTGBWTT (Motif 7)


Reverse Opposite:

p-value:1e-36
log p-value:-8.321e+01
Information Content per bp:1.564
Number of Target Sequences with motif1045.0
Percentage of Target Sequences with motif33.93%
Number of Background Sequences with motif9117.6
Percentage of Background Sequences with motif23.82%
Average Position of motif in Targets346.2 +/- 338.0bp
Average Position of motif in Background185.2 +/- 148.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.37
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---CGTGBWTT
GGACGTGC---

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---CGTGBWTT
RTACGTGC---

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:3
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CGTGBWTT
TGCGTG----

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CGTGBWTT
TACGTGCV--

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:5
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---CGTGBWTT
TTGCGTGCVA-

MA0004.1_Arnt/Jaspar

Match Rank:6
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CGTGBWTT
CACGTG----

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:7
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGBWTT
GGGTACGTGC---

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CGTGBWTT
NCCACGTG----

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CGTGBWTT
GHCACGTG----

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CGTGBWTT
GNCACGTG----