Supplementary Table 2. Identified SNPs in PTB GWAS SNP chr pos beta.outcome se.outcome samplesize.outcome pval.outcome eaf.outcome effect_allele.outcome other_allele.outcome outcome id.outcome originalname.outcome outcome.deprecated mr_keep.outcome data_source.outcome rs12712928 2 45192080 -0.00759064 0.0634951 NA 0.904842 0.412922 C G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs391933 13 33575692 -0.121951 0.0608028 NA 0.04489 0.547349 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs123378 13 51088809 -0.0562537 0.0740448 NA 0.447419 0.779478 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs9870576 3 63891105 -0.0721953 0.0638497 NA 0.258178 0.345737 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs10011838 4 153520279 0.0669841 0.0619641 NA 0.27969 0.540195 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs10950550 7 15063923 -0.0433716 0.0660645 NA 0.5115 0.305105 G T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs3735567 7 28219310 -0.0317154 0.0749794 NA 0.672303 0.206842 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs9461650 6 31143241 0.114292 0.0715121 NA 0.109995 0.236708 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs17168486 7 14898282 0.022039 0.0617399 NA 0.721117 0.398345 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs12698877 7 69696905 0.111848 0.0650808 NA 0.085688 0.320897 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs39233 7 89752238 0.050767 0.0731225 NA 0.487511 0.232128 C G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs55734389 6 7172221 -0.0594168 0.0630221 NA 0.345787 0.35891 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs62485379 7 140630353 0.0414832 0.122449 NA 0.734776 0.0658304 T A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs3735641 7 127229347 0.0690154 0.069734 NA 0.322323 0.746814 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2780215 6 34236973 -0.0328046 0.0985261 NA 0.739169 0.112448 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs113154802 9 98278413 0.0378336 0.101032 NA 0.708055 0.102089 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs476828 18 57852587 -0.0112111 0.0698997 NA 0.872575 0.251922 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs6731688 2 630662 -0.00209765 0.0999627 NA 0.983258 0.902224 C A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2240885 16 3647098 0.138799 0.0635254 NA 0.0288935 0.417257 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs952471 15 77776498 0.0144201 0.0616917 NA 0.815183 0.40541 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs55700915 14 103237952 -0.114947 0.0629187 NA 0.0677127 0.448364 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs35503308 4 1784211 0.0367786 0.0790481 NA 0.641738 0.72646 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs34811727 12 121500997 -0.0699003 0.0966442 NA 0.469511 0.112566 T G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2237897 11 2858546 -0.108055 0.063715 NA 0.0899021 0.378334 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs532504 1 177878933 0.00939042 0.0722808 NA 0.896633 0.223475 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs60573766 1 20688352 -0.0531727 0.0625177 NA 0.395034 0.382757 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs3963364 3 12385357 -0.128565 0.171842 NA 0.454364 0.0397888 A C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs1459513 3 114960798 -0.0298747 0.062556 NA 0.632958 0.616793 C A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs73856630 3 123193270 0.0106389 0.065209 NA 0.870399 0.323715 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs13086331 3 187698333 0.109631 0.0866484 NA 0.205786 0.143878 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs1850421 3 152382352 -0.00348553 0.0680431 NA 0.959146 0.726771 C A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs6012878 20 48837478 -0.0295482 0.0661089 NA 0.654902 0.406062 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs10860209 12 97850215 -0.100211 0.0627856 NA 0.11047 0.401274 A C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs12437434 14 24878370 -0.0290805 0.0661772 NA 0.660347 0.290605 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs77789961 14 101250258 -0.117699 0.0759961 NA 0.121441 0.266141 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs9368194 6 20510461 -0.0337859 0.0625605 NA 0.589161 0.496537 C G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs3135911 5 176513896 -0.00599102 0.0616982 NA 0.922645 0.441413 A C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs9379084 6 7231843 0.0194963 0.0778828 NA 0.802333 0.258935 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs9788635 15 62133674 0.025955 0.0707753 NA 0.713824 0.241065 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs4544248 16 20334816 0.210385 0.115482 NA 0.0684857 0.0768288 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs475002 19 7986638 0.030173 0.0605788 NA 0.618429 0.544873 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs149265787 8 75214398 -0.152409 0.194001 NA 0.432098 0.0255348 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2908279 7 44174857 -0.0837598 0.0618986 NA 0.175999 0.59837 G T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs10507349 13 26781528 0.0439564 0.0617635 NA 0.476658 0.448908 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2796441 9 84308948 -0.0771441 0.062084 NA 0.214024 0.62091 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7107784 11 2215089 -0.133942 0.111285 NA 0.228748 0.909813 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2289488 11 2892955 0.00458493 0.0760079 NA 0.951899 0.310483 C G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs3751236 12 27963402 -0.0141649 0.0660831 NA 0.830275 0.309799 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs6416749 16 73100308 0.0605129 0.0689077 NA 0.37985 0.623477 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2706710 17 65641651 -0.123221 0.0915671 NA 0.178403 0.121024 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs3837848 17 29647358 0.0371681 0.0647245 NA 0.565797 0.371434 AT A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs35917376 15 75595357 -0.0584229 0.0731934 NA 0.424755 0.598248 A T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs8026714 15 91522253 0.0272367 0.0609609 NA 0.655027 0.472784 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs16918226 10 64901223 -0.107469 0.0777959 NA 0.167148 0.188797 T A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7895832 10 94276526 0.0173301 0.075434 NA 0.818295 0.206642 T A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs10830963 11 92708710 -0.0876644 0.0609505 NA 0.150353 0.421415 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs28599782 4 71844118 -0.113 0.0730364 NA 0.12182 0.215439 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs11426513 8 118049260 0.0108051 0.0634905 NA 0.864866 0.514223 AT A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2980883 8 126474405 0.0695047 0.0655826 NA 0.289234 0.650809 G T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs376993806 9 139246588 0.0707983 0.0899098 NA 0.431027 0.846277 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs10795946 10 12324273 0.00287319 0.084031 NA 0.972724 0.208756 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7901695 10 114754088 0.243357 0.146141 NA 0.0958694 0.0449876 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs10886863 10 122929493 0.0467115 0.0663278 NA 0.481276 0.697707 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs1260326 2 27730940 0.0103686 0.060968 NA 0.864958 0.440882 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2269245 1 64107893 0.177222 0.0784971 NA 0.0239651 0.182706 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7656416 4 1254535 0.0610066 0.067283 NA 0.364557 0.308722 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs3887925 3 186665645 0.0732083 0.0610442 NA 0.230424 0.424515 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs742762 6 39046644 0.0394824 0.0711275 NA 0.578831 0.258181 C A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs9390022 6 143056556 -0.0489162 0.0755066 NA 0.517089 0.201801 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs61779313 1 39944249 0.0659943 0.0807484 NA 0.413767 0.163047 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs201018682 3 170643788 -0.011203 0.0804945 NA 0.88931 0.174983 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs9350271 6 20683164 0.00686986 0.0617153 NA 0.911366 0.425779 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs16884229 6 20857925 0.125246 0.0653554 NA 0.0553159 0.3088 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs243018 2 60586707 0.0254791 0.067005 NA 0.703756 0.677621 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs10965248 9 22132878 -0.124146 0.0610021 NA 0.0418389 0.435484 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs35589574 7 127846470 0.0923825 0.0990681 NA 0.35107 0.111697 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs1016565 9 1032567 0.0195719 0.0618621 NA 0.751715 0.394211 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7787720 7 13886654 0.0525398 0.0607172 NA 0.386863 0.446776 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs1182444 7 157024510 0.035527 0.0605068 NA 0.557099 0.458746 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs349359 8 73503743 -0.0425735 0.0700132 NA 0.543135 0.252119 C A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs34642578 8 17927609 0.010929 0.139931 NA 0.937746 0.0505979 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs13266634 8 118184783 -0.0754721 0.0614077 NA 0.219059 0.406627 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs11926494 3 23258614 -0.0114828 0.0823373 NA 0.889086 0.164057 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs340875 1 214158986 0.0977706 0.0612119 NA 0.110211 0.563377 C G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs838720 2 234303281 0.00711251 0.0616316 NA 0.908125 0.449634 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2092518 20 42814688 -0.0210488 0.0650156 NA 0.746127 0.321751 T G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs73085586 20 22430241 0.0632776 0.0638722 NA 0.321837 0.352376 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs117027183 5 36187883 -0.127867 0.0929024 NA 0.16871 0.127297 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs256904 5 55810305 0.0567028 0.0607596 NA 0.3507 0.467043 T A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs261982 5 95843763 -0.141914 0.0620019 NA 0.0220872 0.394999 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs988748 11 27724745 -0.042041 0.0618789 NA 0.496879 0.598977 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7109575 11 72463435 0.0908761 0.161552 NA 0.573762 0.0396832 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs149336329 15 52587740 0.148909 0.142596 NA 0.296358 0.0527975 T G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs58524310 14 77382503 -0.0697972 0.0671836 NA 0.29885 0.319055 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs8037894 15 62394264 0.101886 0.061249 NA 0.0962188 0.423962 C G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs1266488 15 91458552 0.0791099 0.0625932 NA 0.206275 0.438489 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs12907887 15 40615872 0.0966811 0.0680358 NA 0.155307 0.270404 C G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2583934 12 66232810 0.0391683 0.0637937 NA 0.539226 0.341198 T G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7313668 12 71449521 0.027246 0.0621177 NA 0.660938 0.384183 T G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs9523295 13 91948047 0.118796 0.0790091 NA 0.132692 0.177783 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7250869 19 33887405 -0.010961 0.0607997 NA 0.856932 0.475049 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs3094508 17 36062935 -0.135834 0.0747051 NA 0.069024 0.222535 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs117267808 16 20323168 0.180345 0.114603 NA 0.11557 0.0790348 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7501939 17 36101156 -0.0171906 0.0643417 NA 0.789333 0.67738 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs62405419 6 50787459 0.0150121 0.0672252 NA 0.823294 0.287551 T G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs80196932 6 117996631 0.0432587 0.0710977 NA 0.542895 0.247735 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs4273712 6 126964510 -0.0973879 0.0605848 NA 0.107953 0.467978 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs1513275 7 28259233 0.0320041 0.0776981 NA 0.68041 0.815346 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2074120 7 93107093 -0.0560939 0.0643545 NA 0.383405 0.671305 C A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs186568031 17 6953781 -0.0461621 0.112281 NA 0.680976 0.0810396 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7210161 17 6964583 -0.10377 0.0640136 NA 0.105003 0.510811 C G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7507912 19 46157916 -0.0125003 0.0759012 NA 0.869186 0.213287 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs9316706 13 22589883 0.0116854 0.0642852 NA 0.85576 0.662492 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs4930974 12 31456888 0.0718547 0.0717093 NA 0.31633 0.282383 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs4739515 8 37391203 -0.0987931 0.0617172 NA 0.109435 0.436919 C G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs4736999 8 41506152 -0.06849 0.0606168 NA 0.258525 0.508255 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs13092876 3 185495320 -0.0388141 0.0650273 NA 0.550581 0.339267 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs9866168 3 195830310 -0.00942818 0.0694865 NA 0.892071 0.609258 T A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs62173901 2 165509825 0.375448 0.203728 NA 0.0653446 0.0256963 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs11205766 1 51191935 0.0434789 0.105727 NA 0.680898 0.0917868 A T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs329122 5 133864599 0.117525 0.0626346 NA 0.0606052 0.373132 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs11374208 10 94521113 -0.225299 0.144479 NA 0.118904 0.952325 TC T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs3852529 11 2827486 0.083374 0.100815 NA 0.408238 0.145985 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs4148646 11 17415190 0.0816132 0.0624115 NA 0.190987 0.61639 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs633862 9 136155444 -0.0885774 0.0604657 NA 0.142943 0.532922 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs11257657 10 12309139 -0.00173798 0.0659542 NA 0.978977 0.452726 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs410504 4 85301055 -0.190951 0.142697 NA 0.180846 0.947558 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs6885132 5 14768092 -0.020488 0.0609894 NA 0.736926 0.442964 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs10938398 4 45186139 0.0203326 0.0674803 NA 0.763177 0.296265 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2126736 5 74574984 -0.169395 0.0613476 NA 0.00575824 0.583542 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs2327777 6 137293227 -0.0647506 0.0624496 NA 0.299808 0.608158 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs59317019 1 46249293 -0.0918889 0.0727739 NA 0.20671 0.311779 CT C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs58718028 3 23560197 0.0430364 0.0668506 NA 0.519724 0.317751 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs10852123 15 90428894 0.0700701 0.0771809 NA 0.363948 0.787334 C A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs62112368 19 22306775 -0.148358 0.148689 NA 0.31839 0.0579036 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs111246699 12 118400856 0.00836068 0.0685149 NA 0.902877 0.270145 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs55783344 12 121432299 0.0528264 0.0720479 NA 0.463429 0.229176 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs12625671 20 42994812 0.0485532 0.0626262 NA 0.43817 0.443745 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs4286946 8 36849946 0.0678727 0.0655947 NA 0.300797 0.367468 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs4499362 2 149568396 -0.0610264 0.0680597 NA 0.369901 0.342108 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs76878791 5 55818401 0.0354115 0.0648568 NA 0.585069 0.336359 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs238763 1 229642499 0.0135128 0.0719521 NA 0.851031 0.298372 A T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs146716733 10 63717113 0.0586577 0.0915728 NA 0.52181 0.131064 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7900112 10 77314617 0.0398942 0.0607356 NA 0.511277 0.493048 A T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs4403739 10 94996987 0.0145943 0.161749 NA 0.928106 0.963051 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs35906730 10 94435673 -0.0728169 0.0696563 NA 0.29585 0.736478 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7090695 10 112801213 0.0075171 0.0611214 NA 0.902118 0.578498 C G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs57373996 10 114733337 0.119728 0.150658 NA 0.426788 0.0519907 GTTTA G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs72874858 2 165445620 0.0988356 0.102411 NA 0.334503 0.100392 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs1421085 16 53800954 -0.0275608 0.0745739 NA 0.711697 0.202694 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs12610052 19 46239123 -0.10349 0.0678646 NA 0.127271 0.333301 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs17072370 13 80705730 -0.0517272 0.0690959 NA 0.454081 0.26796 A T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs896852 8 95960886 -0.0787726 0.0655152 NA 0.229226 0.697945 T G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs8043085 15 38828140 0.0567545 0.0612648 NA 0.354248 0.490748 T G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs3869115 6 31204694 0.0964506 0.0772172 NA 0.211635 0.196188 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs1206684 6 131954879 -0.0368025 0.0605439 NA 0.543277 0.479892 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs1426371 12 108629780 -0.0644673 0.0623583 NA 0.301219 0.482587 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs147707338 12 121508317 -0.0360472 0.104313 NA 0.729667 0.102278 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs61975988 14 38809661 0.0251816 0.0606896 NA 0.678197 0.554585 G A Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs4237150 9 4290085 0.0927514 0.0616821 NA 0.132659 0.427654 C G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs1575972 9 22301092 0.0202396 0.130644 NA 0.876883 0.0587418 A T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs1328412 9 81917127 -0.300135 0.137164 NA 0.0286589 0.0536772 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs76203868 10 12104286 -0.0448273 0.075528 NA 0.552834 0.241762 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs7084330 10 12569272 -0.0326174 0.0669239 NA 0.625988 0.296845 G C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs9948462 18 7076836 -0.112296 0.0678105 NA 0.0977147 0.714513 T C Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs62286764 4 1413421 0.0341496 0.0656644 NA 0.60302 0.634927 A T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs703980 10 80943841 0.241937 0.060777 NA 6.87E-05 0.446628 A G Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd rs28691713 22 50446550 0.0084752 0.0714524 NA 0.905582 0.515711 C T Pulmonary tuberculosis || id:bbj-a-149 bbj-a-149 Pulmonary tuberculosis Pulmonary tuberculosis || || TRUE igd