>Salpingoeca rosetta chromovirus-1 (Sroscv1) [RepBase Type:LTR/Gypsy; Repbase Reference Repeat:Gypsy-36_ALy_1p] 1 TGTTGTGTGAAATGCTGACTCAGCTTTCACACAACATACCCAACCACTTGCATGCATGCA 61 ATCTTACATCAACTTGCACGCATGCAAGATGGCTGCCACGTGTACTTGTTGTTCACCTGT 121 CTCACTTGTTGTTCACCTGTCTCACTTGTTGTTTGTTCACTTGATGTTTGTTTGATTCAT 181 TCACCTCTCGTCTTGTCTACTTTCACATTACACTACTTACACTACCGACATCTCGGTACA 241 ACACTTGGTAGCGATTTCGGTTTGGTGTTGCTGGGCTCTCCCACGCACCACAATCCGCCC 301 CTCCGGGCATCGACCCTTCTTTTCTCCACACGCAAACACACACGGACGCACGTTCACATC 361 GTCCACGAGCGTGCTCGTCATCACACGCGTGTCTGTGCTCTCGCTTTGTTCTTTGTTGAA 421 AGCACGTATTTGGTGTCGCGTCACCCTGTATCTTCGCGCGCGTCGCCCCACATACACACT 481 CGTGTTGATCGTATCTTCTTCTTACGCCGGCTGTGTTGTGCTGTTGTTGCCCGCGTTTAC 541 TTTTCCTCTTGCTCACTGTTCCTTTTGTGAGCCAACGCGTTGTCTCTCACGCCTGTGGTT 601 TTGGTCGCCTTGTATCTGGTGGTTCGTAGGTTTCGTTTGCGGCCGTCTTCTGTTTTGGCG 661 CCAAAACTTGCTTCGAGTCCCTCAAACTCTGCTTGCTTCATAACGCTGCACGCACCTTCG 721 TGCATTGCCTTGTCCATACTCTGTACTCCATCATGGAGCCAACGCCGCGTGTGCTACGCG 781 ACACTGCAGCACGGCAGGCACGACGAGCCGATGCCTCGCTGCGCGCCGAACAGGCGGCGC 841 CTGACCGCACAGCGGACGTGTCCCGTGAACCAGTGGCTTCGCGCCGCTCTACGCCATCGC 901 TTGACACACGCGCTCGTCCTAGCGACGCTGGCCCAATTCCCCTGCCAACGGACGAGCACG 961 ATTCTGATGGCGCAGGCTTCGTCTCGTCTTCTGTGCTGCACCAATCAGTTGGTGGGCACG 1021 CTCGTCAGCTGGCCCTCAAGGCTATCACCTACGTTTCCGAAGACACCGACGACCTCGCCG 1081 GTTGGCTGCGGCGCTTTCGCCGTGCAATGGGCATCGTTCGCGTGCCTGAAGAAGAGTGGG 1141 TTGACATGGCGTCCTTGTACATGACGGGCGCCCTTGGCGAATGGACAGTGAGCCGTGCGT 1201 TCAAGTCCTTCGACGACTTCGAGTCGTCTGCAATCGCCGCATTCGGTGACCCCAGCCAAC 1261 AGTGGCGTGCGCGCCTGCAGCTAGCGGGAATCCGTCAGACTGGCAACATTGTCGGTTACA 1321 TCCGCGCGTTCCGCAAGCTTGTGGCGACGGCCAGCATGCGTGGCAACGATGACCTGCTAG 1381 TCGCACTCTTCGTCAACGGCATTCGCCTTCCGTCCACCCGCCGCGAGCTCACAATTCGGC 1441 AGCCCGTCCTCCTCGAGGACGCCATCTCCATTGCCCTCGACTTGGGCGCTTCTGAGCAGT 1501 ATGACCAGCGTGGTGGAACACGCAACAACGGCTCAAGTGCCCGACGTGACAGTGGGCGTC 1561 CAGCCTGGCGCAGTGACCGCCGTGACCCGCGATATCAGCGTGACCGACGCCCTCGTCGGC 1621 AGGACCGCCACACTCCTTCAAGCATCAACGTCGTGGAGGACGTGCAAGGCCTCAGCATCT 1681 GCAGTGTGGGCGCCCCAACGCAGCGGGCCACGGTGCGCGCAGTCGTCACTGGAGAACTGG 1741 ACGGCGAGCCTCGTCGCATGCTGCTCGACACCGGCGCTGATGTTTCTTTCGCCTCACCAC 1801 ATCTGCTGCGTGATGCTACATCAGCCCTGACCCCTGTGTCGCTGCGCTATCCAAACGGCA 1861 CCACCTTCGTGGCTCGTGACGCCGCTCATATGCCTGTCAAGGTCCCCGGCGTGCCTGCTG 1921 TTACAGCGACGCTGCTTGCTGCTCCATGCCCATCCGATGTCGATGCTGTGCTTGGTACTG 1981 ATGTGCTAGCCCAGAACGACTGGGTACTCTCCTTTGTTGACGACACGGTCCGTGTGAGTA 2041 AAACATCGCAGCTCTGTTCTTCCTCAGCCACAACCCCCACAGTCAGCGCGTCACCTTCGC 2101 ACGCATGCGTACAATGCCGTCCCGAGCCGCAACCTGCTCCAACTTCTGCATCACGTACGC 2161 CCTCCACCGACATCTCGGTCAAATGCGTTTCTGCTACAACTGTGGCTGCCTATGTGCGTC 2221 GGGACGAAGTTGAGGACGTATTCGTCGCGCTTGTGTCGGCGCAGCGCAGTGACCCGACAC 2281 CCGCACAGCCGGACCACGAGCTGGACACCTTGCTTCACGAGTATGCGGATGTGTTCTCCA 2341 ACGACCTGCCTCGTTCACTGCCCCCACGCCGCCCAGAAGACCTCCGCATCCGCCTTCAAC 2401 CAGGAGCCAAAACGCCCCCCTACGTCCGCTACAAGCTAAGTCCCCCAGAGCGGGACGAGC 2461 TTTCTCGCCAGCTGAAAGATCTGCTGCGAAAGGGCTTCATCAGGCCGTCATCCAGCCCAT 2521 TTGCAGCCCCTGTGCTCCTGGTCCGCAAAAAAGATGGCAGCATGCGGTTCTGCGTGGACT 2581 TCCGGCGCCTCAACCACATCAGCATCAAGGATCGTTATCCCTTACCAGATATGCTGTCTG 2641 TCTTGGCAAAATGCGCCGGCCACCGCCTGTATACGACACTGGACCTCTGTTCAGGATACC 2701 ACCAGCTCCGAGTACACCCGCAAGATGAGGACACGACTGCCTTCGTTTGCGATGACGGCC 2761 AATTCGCCTGGCGAGTTATGCCATTTGGTATTGCTAACGGCCCACCTGTCTTCCAAAGGC 2821 TCATGGACCGTGTCACTGCCGACATCCCTGGAGTTCTTGTCTACCTCGACGACATCGTGG 2881 TCTTCTCCAACACGAAGCATCAGCACCTGCGCACCCTTCGCCGGGTGTTCCAGCGTCTCC 2941 GCGACGAACGGCTGGCTCTGAAGCCCAAAAAATGTGAATTCCTCAAGCCATCCCTTCTGT 3001 TTCTGGGACATGTGCTCTCCTGCCATGGCATATCCGTCGACCCAGACAAGGTTGACGCCG 3061 TCATGAAGCTCGCCAAGCCTTCATCCAAGACCGAACTGCTCAGCTTCCTTGGCACGGTGA 3121 ACTACTACCGTCGCTTCCTACGCAACATGGAGGACATAGCAGCGCCCCTGCGGGAGCTTC 3181 AGGACCTCGCTGAATGGGGTGAGGCACACGAGCATGCTTTCAACGCTCTCAAGCAAGCCC 3241 TATGCAACGCGACGACACTTGCGCCTCCCGATCACAACGCCCCCTTTATCATCAGAGCAG 3301 ACGCATCGGACAAGGGTATCGGCGCAGTTCTTGAGCAACACGGCCGTCCCGTCGAATTTA 3361 TGTCCAAGAAGCTCACATCTGCTGAGGCTAACTACCCCATTCGCCAGCGTGAGCTACTGG 3421 CCATTGTGGTGGCCCTTCAGAAGTGGCGCCATTACTTCGGCTTCTCCACGGTTGAAGTCA 3481 TCACCGATCACAAGTCTCTGTTGGACCTGCAAACACAGAGCAAGATTTCCGAGCGACGCA 3541 TCCTCCGCTGGATGGAGACCCTCGCAGAGTTTTCCATCAAATGGACCTACACGCCCGGCG 3601 TTGACAATCATGTACCTGATACACTCAGCCGCCTCGTCGGATCTACCACCACTGCACTCG 3661 TGCCAACACAGCTTGGAACGAACTATGAGGCCGATTCAGCGTACAAGAAGCTTCTCGCGC 3721 GCCTGTCACCGCCTTTTCGGTTCGACGGCGACGTTCTTCTCTTCCACGACCGGCGATGTG 3781 TGGTGAAGAGCGATATCAAGGCAGTTCTACGCCACGCTCATGATGCCCACGGACACCCTG 3841 GCCTATTCAAGACGCTCGGGCACCTGTCCCGTCGTTTCTTCTGGCCAAGAATGTACTCTG 3901 ATGCGGCGGAGTATATTCAGGGATGCCACACCTGCCTCATGTCCAAACCCGCCGTGCGGC 3961 CAACTGCGCCTCTGCAGCCACTCGACGTTCCACCGTACCCCTGGCACACGGTTACTTGCG 4021 ACTTTGTGTCAGGCTTCCCCACCGTACGTGGCTTCGACACAATTGCGGTGTACGTCGACA 4081 AGCTTAGCAAGACTGTCCACCTCGCGCCCTGTTCGAAGACGCTCGATGCTGCTGGGGCGG 4141 CACGGCTGCTTGTTGACACTGTGGTGCGTCACCACGGAACACCATGCAGAATGATCTCGG 4201 ACAGAGACCCACGCTTTGTCAGCAAGGTCTACAAGGAGGTCGCCAAAGCTCTCGGCATCA 4261 AACTCTCCTTCTCCACAGCCTCACATCCGCAAACGGACGGCCAGTCGGAAAGGAGTGTTC 4321 AGTCCGTTACCACACTACTTCGTTGCCTTGTGGCTGACAACCTGCGTCCATGGCCAGACC 4381 TACTCCCACTGGTTGAATTCTGCATCAATAGCAGTCCACACGCCGTGACAAAGGTGCCGC 4441 CCTTTCAGGCCACACAAGGATTCACGCCGTCGCTGTTTCCAGTTGACGTCGACTTCTTGT 4501 CTCCTGTAGCGGAGGATCTCATCGACAGCATCAACGCGACGGTGCAGAGATGCCGTGACA 4561 TGCTCCAGTACCAGAATGCAGTGACGACGTCATCCCAGACAGCAACAGCTACGCCTTTTG 4621 CTGAAGGGGAAGACGTGTATGTCTCATCTGAGCTCCTCCTCGACGACCAGCACCGAAACA 4681 AAAAGCGGAAGCTTCGTCCGCGTTTCCTGGGTCCTGTGAAGATCAAGCGTGTGCTGGGTC 4741 CGGCACACGTTACTCTGCAACTACCGCCTGGCGTCCACATCCACCCGACCGTCAACATCA 4801 AACACCTGAAGAAACCCACACGCCTGCCACGCGATGTGTCTCGTCCACCGCCTTTGCATG 4861 GCAGTGACGTCTACGAGCTCGAGAGCATTCAGGGGCATCGAACTACACGGCGCGGCACTC 4921 AATACCTTTGCAAATGGAAGGGGTACCCCAGCACCGAGAATACGTACGAGCATCCAGACA 4981 ACCTCCTGGGCAAGGATGCACGACTGCTGCTTGCGAACTACAAGCAGCAATTTACGCAGG 5041 GGGAGAGTGTTGTGTGAAATGCTGACTCAGCTTTCACACAACATACCCAACCACTTGCAT 5101 GCATGCAATCTTACATCAACTTGCACGCATGCAAGATGGCTGCCACGTGTACTTGTTGTT 5161 CACCTGTCTCACTTGTTGTTCACCTGTCTCACTTGTTGTTTGTTCACTTGATGTTTGTTT 5221 GATTCATTCACCTCTCGTCTTGTCTACTTTCACATTACACTACTTACACTACCGACATCT 5281 CGGTACAACA Features 1-243 5' long terminal repeat 244-752 5' untranslated region 753-5054 Hypothetical Gag-Pol coding sequence 5048-5290 3' long terminal repeat Conceptual Protein Sequences >Hypothetical Gag-Pol 1 MEPTPRVLRDTAARQARRADASLRAEQAAPDRTADVSREPVASRRSTPSLDTRARPSDAG 61 PIPLPTDEHDSDGAGFVSSSVLHQSVGGHARQLALKAITYVSEDTDDLAGWLRRFRRAMG 121 IVRVPEEEWVDMASLYMTGALGEWTVSRAFKSFDDFESSAIAAFGDPSQQWRARLQLAGI 181 RQTGNIVGYIRAFRKLVATASMRGNDDLLVALFVNGIRLPSTRRELTIRQPVLLEDAISI 241 ALDLGASEQYDQRGGTRNNGSSARRDSGRPAWRSDRRDPRYQRDRRPRRQDRHTPSSINV 301 VEDVQGLSICSVGAPTQRATVRAVVTGELDGEPRRMLLDTGADVSFASPHLLRDATSALT 361 PVSLRYPNGTTFVARDAAHMPVKVPGVPAVTATLLAAPCPSDVDAVLGTDVLAQNDWVLS 421 FVDDTVRVSKTSQLCSSSATTPTVSASPSHACVQCRPEPQPAPTSASRTPSTDISVKCVS 481 ATTVAAYVRRDEVEDVFVALVSAQRSDPTPAQPDHELDTLLHEYADVFSNDLPRSLPPRR 541 PEDLRIRLQPGAKTPPYVRYKLSPPERDELSRQLKDLLRKGFIRPSSSPFAAPVLLVRKK 601 DGSMRFCVDFRRLNHISIKDRYPLPDMLSVLAKCAGHRLYTTLDLCSGYHQLRVHPQDED 661 TTAFVCDDGQFAWRVMPFGIANGPPVFQRLMDRVTADIPGVLVYLDDIVVFSNTKHQHLR 721 TLRRVFQRLRDERLALKPKKCEFLKPSLLFLGHVLSCHGISVDPDKVDAVMKLAKPSSKT 781 ELLSFLGTVNYYRRFLRNMEDIAAPLRELQDLAEWGEAHEHAFNALKQALCNATTLAPPD 841 HNAPFIIRADASDKGIGAVLEQHGRPVEFMSKKLTSAEANYPIRQRELLAIVVALQKWRH 901 YFGFSTVEVITDHKSLLDLQTQSKISERRILRWMETLAEFSIKWTYTPGVDNHVPDTLSR 961 LVGSTTTALVPTQLGTNYEADSAYKKLLARLSPPFRFDGDVLLFHDRRCVVKSDIKAVLR 1021 HAHDAHGHPGLFKTLGHLSRRFFWPRMYSDAAEYIQGCHTCLMSKPAVRPTAPLQPLDVP 1081 PYPWHTVTCDFVSGFPTVRGFDTIAVYVDKLSKTVHLAPCSKTLDAAGAARLLVDTVVRH 1141 HGTPCRMISDRDPRFVSKVYKEVAKALGIKLSFSTASHPQTDGQSERSVQSVTTLLRCLV 1201 ADNLRPWPDLLPLVEFCINSSPHAVTKVPPFQATQGFTPSLFPVDVDFLSPVAEDLIDSI 1261 NATVQRCRDMLQYQNAVTTSSQTATATPFAEGEDVYVSSELLLDDQHRNKKRKLRPRFLG 1321 PVKIKRVLGPAHVTLQLPPGVHIHPTVNIKHLKKPTRLPRDVSRPPPLHGSDVYELESIQ 1381 GHRTTRRGTQYLCKWKGYPSTENTYEHPDNLLGKDARLLLANYKQQFTQGESVV >Salpingoeca rosetta chromovirus-2 (Sroscv2) [RepBase Type:LTR/Gypsy; Repbase Reference Repeat:Gypsy-38_PT] 1 TGTAGTGGTTCCACTCCAGCATTCCCTACTTCCGAACCACTACTACTCCACACCACTCTT 61 TTCATATACACAACATCAACCACTCTTGCACTGGCACCTATACTTGCACTTGCCTATTGT 121 CTGTGTTCATTTATTCTTGCTGAATCAAGTCTACACCCCAATATACATCTCCTACACTTG 181 GTCTACTACACTTGGTAGCGATATCCTTCGATCCCCACCTTGAGCACAGAGCAAGCACAC 241 ACCAACTCAGCTGCAAACACGTACCTGTACTGCCTTTCACAATGTCACAGCGTCGTTCTT 301 CTCCACGCCTGGCTTCGTCAGCATCGTCTGCGCCAGATGCCTCTGCGTCGTCGTCATCAG 361 CGACGTCGTCTTCCGCCTACGCAGCGCTCACCCCAACTGTGGGTCCCTCATCTTCGTCGT 421 CAGCGCCATCAGCTCCTGTCGACGCCGGTGTTCAATCTCTTGCTCGCTCGGCTCTCACCC 481 GCATCACGGATCATGATCCTGCCGCGATCGTCTCCTGGTTCCAGACCTTCCGTACCTGCA 541 CTCAACTTCTTCGTCTTCCCTCTGGCCCTGACCAGATCCGCCTCGCGACCCTGTACTTTG 601 ACGGAGCTCTGCAACAGTGGGCACGCCATTACATTGAGGCAAACCCAGATGCGTCTTTTG 661 ATGAGTTCGAAACGGCAGCAACAACGCACTTTGCAGACCCAAGCAAGCAGTGGCGAGCAT 721 TCCAAGACATCGTCACTCACCGTCAACGTGGAGCTGTCACAGGCTACATCGCGTCTTTCC 781 GCCGTTCACTCATCGATGCTTCTCCAGCAAAGCTCGTCGACCTGCAGATCGCCGCTTTCG 841 TCGCCGGTCTTAGGAACGACGACACTCGCCGACATCTGAACATCAAGCGCCCAAGCACCC 901 TGGAGGAAGCGTACAGCATCGCAACGGACTTTGAGCAGACTGTGTCGCACAACGATATAC 961 ACCGCCGCAGCAACAACAACAACAACAACAACAACACTGCACAACGTTATCGCTCGTCAT 1021 CCAAGCACAACCGTCACACGCAGGCACATCAGCGCAATGGACCATCACGCTCCTACAACC 1081 GCAACAGCAACAACAACGACTCACGTCATGGACGAAAGCAGTGCACCCGATGCAACAGGC 1141 AAGGGCACGTCGCCAGTGACTGTTTTGCCAAGAAGACTGCCGACGGACGTCCTCTTGTTG 1201 GCCGCGCAGACATCCAGCGCCAATCACAACTCAACGTCAAACCTGTCTTCACTGTTCCAG 1261 CATTCATCGAAGACAAAGCTGTGAAGATCCTCATTGATACAGGCGCAGAACACTCATTCG 1321 TCTCGTCACGTCTTGACGTCTCCACGAAAGAACGCAGCAAGGCCATCACCTTCACCTTCG 1381 CCAATGGCACGTCCGAAACAACACACCGTTGGACCAAGCTCACCCTCGACCTCGGCGCAA 1441 CAGGCTCATACCTGGTTGATCTTCCCGTGTCCAAGTGCCCACCAGGCATCGATGTCATCC 1501 TTGGTATGGACTGGATCACCGATGTCAAGCCCACGTTCAAGTTCCTCAACGACCGACTCA 1561 CGCTTGGCCCCCCAGAGCACACAGATGCCTCACCTGCACCAACAGCAGTCACACAGTCAC 1621 AGCACCAGCACCAGCAGCAACAGCATCAGCAGCAGCAGCAGCAGCAGAAGCAGCAACAGC 1681 ATCAACAGCAAGCACGCATTGTCACATCGACAGCAGTGAAACGCGATAACAGCACTGATG 1741 TCTCTGGTTCCGCATCAGCTTTCAATGATTGCGCACCAATTTCAGAAATCAAAGTCGTCA 1801 ACTCGGCAAAGATTGACACTTACTTGGCGCAAAACGGATCCGAAGTCTTCATTGGTGCGA 1861 TCGGGTCGCTGGTTCGCGACGTAAGTGCCGAGCAGAAGGACCAAATCCCAGCCCAGGTTC 1921 GCAACCTGCTACAAGAATTCGATGACGTCTTTCCCGAGGAGCTTCCGAATCGCCTTCCGC 1981 CAAGCCGACCAGAGGACGTCGACATCGTCCTCAAACCAAACGCGACTCCACCACCGTTTG 2041 TCCGGTACCGCCTGAATGCTGAAGAGCGCGCAGCCCTCAAGAGCACCATCGCCGACCTTC 2101 TCAACAGTGGACGCATCCAGCCATCCAAGTCAGCGTTCGCCGCACCCGTCATCTTCGTGC 2161 GGAAAGCCGACAAGCTGAACTCCTCAACAATCGGAGACCAGTATCCACTGCCAGACATCG 2221 AGGCCATCCTCAACCGAGTTGCTGGCAACAAGTACTTCACCAAGTTGGACCTCCACTCAG 2281 GATACCACCAGCTTCGCCTCAAGCCAGAAGCTGCTCACCGCACGGCCTTCGCGTGCGACG 2341 CCGGCCACTTCGAGTTTCGCGTCCTGCCATTTGGACTCAAGAACGGCCCTGCCACCTTTC 2401 AACGTCTGATGGACCGCGTCATCAGGGACATCCCCAACACTGCAGTCTACTTGGACGATC 2461 TCATTGTCTTCACGCGCACCCTGGACGATCACGTGTGCACGCTGAGGAAACTCTTCTCGG 2521 CACTCCGCCGTGAGAAACTCGCTTGCAAGCCACGCAAGTGCGTGTTTGCAAAGCCCAGCC 2581 TTCCCTTCCTTGGACATGTCGTCTCTGCCGATGGCATCAGCCCAGACCCAAACAAGACCA 2641 AGGACATCATCTCCACTCCCAAGCCAACATCCATGAAGTCTCTCCGCGCATTCCTGGGCC 2701 TTGCAGGATACTATCGCAAGTTCATCCACGACTTTTCAACAAGAGCTGCACCACTCTACG 2761 CCATCAAGGAGATAACCGACTGGACTGCCACAGCAGCAGCCGCATTCAACGACCTCAAGA 2821 CCGCACTCACCAGCCCAACAGTGCTTGCAGCGCCAGATCAACAGCAGCGATTCGTCATAC 2881 GAGCAGATGCCAGCGACGTTGGCATAGGCGCCGTCTTGGAGCAGAATCAACGCCCTGTCG 2941 CTTTCATGTCGCGTGCTCTCACCGCTGCTGAACGCAACTACCCAGTGCGCCAAAAGGAGC 3001 TTCTTGCTCTTCTGGTCGCACTGCGAAAATGGCGTCACCTGTTCGGGTTCCAGCCTGTAC 3061 GCATCCACACCGATCATCGCTCGTTGCTTCACCTCGCAACACAGGACAAGGTTTCTGAGC 3121 GTCGCATCCATCGTTGGCTTGACGAGCTTGCCGAGTACTCTCTCGAGTGGGAGTACACGC 3181 CTGGCCCTAACAATGTCATTGCTGACTCACTTAGTCGCATGGTCAACACTTCCCTCACCA 3241 CGATTCATCCAACGCCCCTGGACACCGATTACGGTCACGACAAGGCGTACCGCAAGATCC 3301 TCAAGCGAGTGCGTCCGCCCTTCACTTGGAAAGGACCCGTTCTGTTCTTCAAACAACGCA 3361 GATGTATCACTGCCACCGACAAGCTGTTTCTCCTTCGCCTCGCCCACGACGCCCACGCCC 3421 ACAGCGGAGTGGCTGCAGTCGTTGGTCGTCTCACACAGGACTACTACTGGCCACGCATGT 3481 ATTCTGACATTCGCCAATACGTCACGTCTTGCCACACGTGCCTGGAGGCCAAGTCAGGTG 3541 CACCACCCAAGGCAGCCCTACATCCCCTTGCGCCGCCTGACGGTCCCTGGAGCAGCGTCA 3601 GCATGGACTTCATCACTGGTCTTCCCAAGTCCACCGACGGTTTCGATGCAGCGTTTGTGT 3661 TCGTCGATCGTTTCAGCAAGATGACGCACATCGCTCCCTGCCACACGACTACTGATGCTA 3721 CTGATGCAGCGCGCATCCTGTTGTCAACAGTTGTCCGCCTGCACGGTGTGCCCTCGCAAC 3781 TCGTCAGTGACCGCGATCCGCGCTTTACGTCCAGGATGTTCAAGGAGCTCATGGCCATCC 3841 TTGGTGTTCGCTTGTCCATGTCGACTGCAGGACACGCAGCCACCGACGGCCAAACCGAAC 3901 GCATGAACCAAGTTATTGGCAACCTGCTTCGATGCATGTGCGCTGACCACCCAGAGACCT 3961 GGACACAAGCTCTCAACATCATTGAGTTCACCATCAACTCCAACGTGCATGGTGTCACCA 4021 AAACCACACCGTTCTCCATCGTCTACGGACGAACCCCACAACTTCACTTCACAGATGCAA 4081 CGGCCACCACTGCGTCCGCCGAAGAAATCAAGGCACAGCTGCAACTTCTTCTCAAACAGA 4141 CCAAAGACAACCTGTGGCACAACACGGTTGTCATGGCTAATGATGGACCGCAACACGAAC 4201 ACAACTTCAAACCCGGCGACAACGTCTACATCTCCACGTATCTCCTTCGCGACGACGCGA 4261 CCAGACAGCAGCACGGAAAGCTCCGCCGCAAGTATCTCGGACCCTTCACCGTCGATCAAG 4321 TTCTCGGACCAACCCATCTCAAGATCAACCTCCCAGCACGTTCCCGCATTCACCCAGTCA 4381 TCAACACGAAGTTCGTACGCCACGTCAAAGGACAAGTCCGCGGCGTGGACCGCCCGCCCG 4441 CGCTTGACACGGACATCTTCGCCATGGAAGCCATTCTTGGACACAAGATGACGCCCAACG 4501 GTCCGTTGTTCTTGACCAAGTGGCTTGGATACCCGTCCCATGACAGCACCTGGGAGCCTG 4561 CCAAGAACTTCATTGGCAAGGACGCCAAGCGCCTCCTGCGTCAATATAGAAAGAAGGGGA 4621 GAGTGTAGTGGTTCCACTCCAGCATTCCCTACTTCCGAACCACTACTACTCCACACCACT 4681 CTTTTCATATACACAACATCAACCACTCTTGCACTGGCACCTATACTTGCACTTGCCTAT 4741 TGTCTGTGTTCATTTATTCTTGCTGAATCAAGTCTACACCCCAATATACATCTCCTACAC 4801 TTGGTCTACTACA Features 1-190 5' long terminal repeat 191-281 5' untranslated region 282-4625 Hypothetical Gag-Pol coding sequence 4624-4813 3' long terminal repeat Conceptual Protein Sequences >Hypothetical Gag-Pol 1 MSQRRSSPRLASSASSAPDASASSSSATSSSAYAALTPTVGPSSSSSAPSAPVDAGVQSL 61 ARSALTRITDHDPAAIVSWFQTFRTCTQLLRLPSGPDQIRLATLYFDGALQQWARHYIEA 121 NPDASFDEFETAATTHFADPSKQWRAFQDIVTHRQRGAVTGYIASFRRSLIDASPAKLVD 181 LQIAAFVAGLRNDDTRRHLNIKRPSTLEEAYSIATDFEQTVSHNDIHRRSNNNNNNNNTA 241 QRYRSSSKHNRHTQAHQRNGPSRSYNRNSNNNDSRHGRKQCTRCNRQGHVASDCFAKKTA 301 DGRPLVGRADIQRQSQLNVKPVFTVPAFIEDKAVKILIDTGAEHSFVSSRLDVSTKERSK 361 AITFTFANGTSETTHRWTKLTLDLGATGSYLVDLPVSKCPPGIDVILGMDWITDVKPTFK 421 FLNDRLTLGPPEHTDASPAPTAVTQSQHQHQQQQHQQQQQQQKQQQHQQQARIVTSTAVK 481 RDNSTDVSGSASAFNDCAPISEIKVVNSAKIDTYLAQNGSEVFIGAIGSLVRDVSAEQKD 541 QIPAQVRNLLQEFDDVFPEELPNRLPPSRPEDVDIVLKPNATPPPFVRYRLNAEERAALK 601 STIADLLNSGRIQPSKSAFAAPVIFVRKADKLNSSTIGDQYPLPDIEAILNRVAGNKYFT 661 KLDLHSGYHQLRLKPEAAHRTAFACDAGHFEFRVLPFGLKNGPATFQRLMDRVIRDIPNT 721 AVYLDDLIVFTRTLDDHVCTLRKLFSALRREKLACKPRKCVFAKPSLPFLGHVVSADGIS 781 PDPNKTKDIISTPKPTSMKSLRAFLGLAGYYRKFIHDFSTRAAPLYAIKEITDWTATAAA 841 AFNDLKTALTSPTVLAAPDQQQRFVIRADASDVGIGAVLEQNQRPVAFMSRALTAAERNY 901 PVRQKELLALLVALRKWRHLFGFQPVRIHTDHRSLLHLATQDKVSERRIHRWLDELAEYS 961 LEWEYTPGPNNVIADSLSRMVNTSLTTIHPTPLDTDYGHDKAYRKILKRVRPPFTWKGPV 1021 LFFKQRRCITATDKLFLLRLAHDAHAHSGVAAVVGRLTQDYYWPRMYSDIRQYVTSCHTC 1081 LEAKSGAPPKAALHPLAPPDGPWSSVSMDFITGLPKSTDGFDAAFVFVDRFSKMTHIAPC 1141 HTTTDATDAARILLSTVVRLHGVPSQLVSDRDPRFTSRMFKELMAILGVRLSMSTAGHAA 1201 TDGQTERMNQVIGNLLRCMCADHPETWTQALNIIEFTINSNVHGVTKTTPFSIVYGRTPQ 1261 LHFTDATATTASAEEIKAQLQLLLKQTKDNLWHNTVVMANDGPQHEHNFKPGDNVYISTY 1321 LLRDDATRQQHGKLRRKYLGPFTVDQVLGPTHLKINLPARSRIHPVINTKFVRHVKGQVR 1381 GVDRPPALDTDIFAMEAILGHKMTPNGPLFLTKWLGYPSHDSTWEPAKNFIGKDAKRLLR 1441 QYRKKGRV >Salpingoeca rosetta chromovirus-3 (Sroscv3) [RepBase Type:LTR/Gypsy; Repbase Reference Repeat:Gypsy-1_CR_pol] 1 TGTAGTGAGACAGCACTACAATACAAATCCTGAACTTAAGTGTCGTGAAGGAGTGTCAAG 61 GCCGAACTTAAGGGTATCAAGGCATAGTCCTCCCGGAGTTCAGGACCAACACAGATTCCG 121 AACCACACAACAGAACGGAACTACCACTCCTCACCAAGGACACCAACACCCAAGATCCGA 181 CCCCCTTGCTCGTCTCTCTTGACCTTGTGCCTGTCTCTACTTTCCTTGCTTGATTGTTGT 241 CACTTATCTTATCACTCCACTTATCTCATCGCCCCATCCTATTACCCTGTCTTCTTTACT 301 TGCGACTACGTCTCCCGCACAGTATACAGCAAGACCCTACTCTAAGTCCCAGTCAAACAC 361 TCTTACACACACACAGACCAGTCACATCACAACACTTGGTAGCGATTGTCGTTCTACGAT 421 TCTCACCCGCATATCTCTCTGTATACCTCCCAACTTCCCAACCTTTATCAGGTCACGATG 481 CCCCGCTCTACTCCTTCGGTTTCCAGCGCCAATGCTATCAACGCTCCTCGTCTTCAGGAG 541 GACGCCAAGCCATGCGTCTCGGACCTTGTTGCCAAGCTTGTGGACAAGCCCTTCGACAAC 601 CTGGAATGGTTCGCCAACTTGTGCAAGCTCTACGGCTCCCACCCGATGGACAATCTCAAG 661 TACGCCATCCCGAAGACGAACGACGATAGCTTCTCGCGGATTGCGCTGGACTTCTGCCAG 721 GAACATGCCGACACGGCGCAGGCGAGTACCGAGGACAAGGACAAGCTCTGGCAAGTCTTT 781 CTCAACACGTGCTCGGCTCGCTTCGCCCCCCGATGTGATTGGTCTCGGCACATGGACATC 841 GCCCACCTGGAGATTCGCACGGACGAGGACCACGCCGCGTACTCGGAGCGCGCCCGCAGC 901 CTGCTGGCCAACGTCAATCCCGAGCTTCACGTGGTGTGCACGTACCTCGCCGGGTTCCAC 961 GACACGCGTCTGCAGCTCTTCATCTCGGACAAGCAGCCCAAGACTCTGCACGACGCCATC 1021 ATCCTCGTGGACCGGTACTTCTCCATCGTGCGCAGCAAGCGCCGCCACGACACGGCCTCT 1081 TCCGACCTCAAGCGCAGCAAGCGCTTTCCACCACAACAACCGCCGCGCTCGCACCAGCCT 1141 CGCATGAGGAACCGTCGTCCCAAACAGCATCAGCTTCGCAAACTGCCACCGTGCAGTCGG 1201 TGCGGTCGCACCAACCATGTCGTCAGTGATTGCCATGCTCGGCGTCACGTGAATGGCAAA 1261 CAGTTGGATGGGCCAACGGCCACCAACACGGTGCGTGTCAACCCGACACAAGCCGGTGCT 1321 GAGCTGCATGATGCCTCGCACGTTCCTCCGCCTCCGCCTCCTCGACGTCTTCCACGAGTT 1381 GATCCAGCTGAGTCTGTTTCGCAGCTCACTGAGTCCGTGAAGCAAATTGGCATCGTTGAG 1441 GACATGCAATTTGACGAGGAAGGCAGGCCGGTCACCGTTGTGTCCGTGAACGCTTGCACC 1501 CGCAACTCCTCTTTGATTAGCACTAATGTGCTCTTCTGTAACAAGAGGCTGCGAGCGCTT 1561 GTGGACACTGGGGCCGAGAGGTCATTGTGTAAACTCAGCAACTTTTCTGAGACACGTCCC 1621 GGAGCTAAGCTTACGCTTGCTCTCGCGGATGGCAGCACCAGCACCACCGATCGTTACGCC 1681 ACTGGCAAGATCGAGTGGTGTGGCCATGTCACCAGCATGTGCCTGCCAGCAGTGAAAGAT 1741 CTCTCTGTGGATCTCCTGCTCGGTATGGATTGGCTGCAACGGGCCCAACCCGTTTTCGAC 1801 TTCAACAGTGGCACGATTTCGCGCAAATGTAAGTCTAGCCAAGTAGATGTACACAGTTTA 1861 TGCACAAAGTATGCACCTGTGTTTTTGGATTTGACTTGTATGCCTCCCTCTCGAGGAGAG 1921 TTGGATGTGGATATCCCACTTGTCACTAATGCGATGCCCCCCAAGTCACGGTGCTATCGC 1981 CTGAGCTCACATGAGTTCACCACAATGCAGGAAACGGTCAAGGACCTCTTGGACAAGGGG 2041 TGGATCCAACCGTCCACTTCATCTTGGGTTTCTCCTGTACTATTTGTGGTTAAAAAGGAC 2101 AAGAACTTGAGGATGTGTGTGGACTACCGTGCATTGAATGCATTAACGATCCCTAACAGA 2161 TACCCTTTGCCCCTGCTGTCCGAACTCATTACAAAAGCATCTGGACATTCTCTGTTTACA 2221 TCACTTGATCTTAAATCCGCATATCACCAAGTGAGACTCAAACCAAAAGCACGAGAGCTG 2281 ACAGCATTCTTCGCACCTGGTATGGGTCAGTTTGAGTACACGGTCCTTCCTTTCGGGCTG 2341 GCAAACGCTCCTGCCCAATACCAACGCATCATGGATCACATTTTGAAAAATCTTCCCTCC 2401 GAAAACGTCTCCTGTTACTTGGATGACATTCTCATTCACTCTTCAAATGGGATTGATAAT 2461 CATCTCCAAATTGTTGAAGACGTTTTGAAAACGCTCAAGCAAAATCATTTGCACTTGAAC 2521 AAAGCAAAATGCGATTTCGTGACAAATTCCGTGGAATGGCTTGGTCACACCCTTTCAGAA 2581 GGAGGGCACCGCCCCATTGAGAAACAACTCGACCCAGTTCTTCACTGGCCACTGCCCAAG 2641 ACTGCTCACGATTTGCGACAGTTTCTTGGCGCTGCAAACTACTACAAGAAATACATTCGC 2701 AATTACTCCGACTATGTGCAACCATTGTTCAGACACACAAGTGGCACAAAGAAAAACTCG 2761 AAGAAGCGACTGTCAAACTGGACGCAGGATGACTCGCGAATCTTCAACAATCTCAAGGCC 2821 ACCATGGCCAAGTTGCCCACGTTGTGTCCCACGCTCGACCTTGATCCTACAGAGCCACTG 2881 GATCTGTTTACAGACTCCTCCGACAAAGCAGTCGGCGCTGTTCTCCAGCACAAGGGTCGC 2941 CCCATTGAGTTCTACTCCAGCACCCTTTCAGTGCATGAGCGAAACTGGCCAATCAGGCAG 3001 AAGGAGCTGTATGCCGTCATCAAAGCTCTGCAACATTGGCGTTACCTTTGTATCGGTCGC 3061 CCCATCACTGTTTACACCGACCACAAGTCGCTCGAGCGAGTGTTGGCACAGAACAAGATA 3121 CAGGAAGCCCGCATTCAGCGATGGTCGCTCTTCCTCTCAGACTTCAACGTTACTTTCAAG 3181 TACATTCCAGGCGACAAAAACGTCGTTGCGGATGCACTCTCTCGCACCTGCATGGTCAGG 3241 GAGCTGCTTGAAGACGAAACAGTCAACATCCGCTGGTCTGACTACCTCAAAGACCCTTTC 3301 TGGGAGAAGATCATTCACGACCTCGCGTCCTTTCCACAGTACAAACGTGTTGGCGACCTA 3361 CTCTATCACAAGAACCGCATCTGCGTGCCATCTTCCAGTCATAGAAGCGTAATGGCCATG 3421 GCGCATGATGGGCTGAGCAGTGGACATCAAGGTGTTTCCAAGTCTCAGGCCCGCGCTGCG 3481 CGCGAATTCTATTGGCCGGGGATGCACAGTGCGATTCGAGAGTACGTTGACACTTGTCAC 3541 ACATGCGCAACGGCAAAGAGTGGTCGTAGACTCAAGGTCCCCACCCAAGCCTTGCCGGTG 3601 GCACCATACCCGTGGCACACAGTCACAATGGACTTGATGGTTGGACTACCAACTACATCT 3661 CAAGGACACGACGCTATCTACGTGTTCGTAGACAAGTATTCCAAAATGGTCCATTTGGCC 3721 CCTACGTCCAGCACTGTCGATGCCCAGGGTTGTATTTCACTATTCATTCAACATGTGTAC 3781 AAGTTACACGGACTCCCCGAAGTCCTCATCTCCGACAGGGATCCGCGGTTCACCGCAGCT 3841 CTGTTCAGGAAAGTCATGCACAAGTTCAGCGTGCAAATGAAAATGTCAACAGCGGCCCAC 3901 GCTCAGACCGACGGACAGACCGAAAGAGTCAACAGAGTCGTTGGGAATATGCTCCGCTCA 3961 TACGCAAAGTCGAATCAAAGTGCATGGGTTGATTACCTACCTACGATTGAGTTTGCTATC 4021 AACTCATCACCCGCCGCCTCCACAAAGATGGCACCCTTCGAGGTTTGCAACGGCCGGATT 4081 CCAAGACAGATTGGACTGCCTGCTCGCTTGTCAGGGCAAAGCCCTGTGCTCCCAGACGAG 4141 CTCATGGATCGGTTGGCAAAGATACAGCATGAAGCATCCTCCAACTTGCAACAGCACTTT 4201 GACAAGGCTTCGTCATCAGAACACATTGAACCCCCCTTCAGGGAGGGAGACGAAGTGTAT 4261 GTTAGCACACACTTATTACGAAATGAAGATGCGAAGTACCGCTCAAACAAACTCACACCA 4321 CCATACGATGGTCCGTTCAAGATTAAGAACGTTCTCGGTCCAGCGCATTATCGCGTGGAC 4381 TTCTCACCATTGAAAGTGCGCATACACGATGTCATCAACATCAAGTTCCTGAAGAGAACG 4441 AAAGGCACCCGATCTGTGCATCGACCAGGTCCTTTGCAAGGGTTCAGCGATGATGTGTAC 4501 GCAATGGAACGAATCCTGCGCCACAGAAAGCATCGCGGTAGACTCGAGTACCTAGTAAAG 4561 TGGCTCGGCTATCCGGAATATGAAGCGACATACGTTCAGGCCAAAGACATGATTGGCTCA 4621 CGATGCAAACGCTTATTGGCTGAATATCAACTTCAGACTGCCAAAGCAGATGCTGCCAAA 4681 GAGCGCTCTCTCAAACGCAGGTCTCAGAAGAGCAACGCTCGACACATAAGGTCAAAGACC 4741 TCAAAGCGTTAAGCCCTGATGGCGGGGAGAGTGTAGTGAGACAGCACTACAATACAAATC 4801 CTGAACTTAAGTGTCGTGAAGGAGTGTCAAGGCCGAACTTAAGGGTATCAAGGCATAGTC 4861 CTCCCGGAGTTCAGGACCAACACAGATTCCGAACCACACAACAGAACGGAACTACCACTC 4921 CTCACCAAGGACACCAACACCCAAGATCCGACCCCCTTGCTCGTCTCTCTTGACCTTGTG 4981 CCTGTCTCTACTTTCCTTGCTTGATTGTTGTCACTTATCTTATCACTCCACTTATCTCAT 5041 CGCCCCATCCTATTACCCTGTCTTCTTTACTTGCGACTACGTCTCCCGCACAGTATACAG 5101 CAAGACCCTACTCTAAGTCCCAGTCAAACACTCTTACACACACACAGACCAGTCACATCA 5161 CAACA Features 1-394 5' long terminal repeat 395-477 5' untranslated region 478-4749 Hypothetical Gag-Pol coding sequence 4750-4771 3' untranslated region 4772-5165 3' long terminal repeat Conceptual Protein Sequences >Hypothetical 1 MPRSTPSVSSANAINAPRLQEDAKPCVSDLVAKLVDKPFDNLEWFANLCKLYGSHPMDNL 61 KYAIPKTNDDSFSRIALDFCQEHADTAQASTEDKDKLWQVFLNTCSARFAPRCDWSRHMD 121 IAHLEIRTDEDHAAYSERARSLLANVNPELHVVCTYLAGFHDTRLQLFISDKQPKTLHDA 181 IILVDRYFSIVRSKRRHDTASSDLKRSKRFPPQQPPRSHQPRMRNRRPKQHQLRKLPPCS 241 RCGRTNHVVSDCHARRHVNGKQLDGPTATNTVRVNPTQAGAELHDASHVPPPPPPRRLPR 301 VDPAESVSQLTESVKQIGIVEDMQFDEEGRPVTVVSVNACTRNSSLISTNVLFCNKRLRA 361 LVDTGAERSLCKLSNFSETRPGAKLTLALADGSTSTTDRYATGKIEWCGHVTSMCLPAVK 421 DLSVDLLLGMDWLQRAQPVFDFNSGTISRKCKSSQVDVHSLCTKYAPVFLDLTCMPPSRG 481 ELDVDIPLVTNAMPPKSRCYRLSSHEFTTMQETVKDLLDKGWIQPSTSSWVSPVLFVVKK 541 DKNLRMCVDYRALNALTIPNRYPLPLLSELITKASGHSLFTSLDLKSAYHQVRLKPKARE 601 LTAFFAPGMGQFEYTVLPFGLANAPAQYQRIMDHILKNLPSENVSCYLDDILIHSSNGID 661 NHLQIVEDVLKTLKQNHLHLNKAKCDFVTNSVEWLGHTLSEGGHRPIEKQLDPVLHWPLP 721 KTAHDLRQFLGAANYYKKYIRNYSDYVQPLFRHTSGTKKNSKKRLSNWTQDDSRIFNNLK 781 ATMAKLPTLCPTLDLDPTEPLDLFTDSSDKAVGAVLQHKGRPIEFYSSTLSVHERNWPIR 841 QKELYAVIKALQHWRYLCIGRPITVYTDHKSLERVLAQNKIQEARIQRWSLFLSDFNVTF 901 KYIPGDKNVVADALSRTCMVRELLEDETVNIRWSDYLKDPFWEKIIHDLASFPQYKRVGD 961 LLYHKNRICVPSSSHRSVMAMAHDGLSSGHQGVSKSQARAAREFYWPGMHSAIREYVDTC 1021 HTCATAKSGRRLKVPTQALPVAPYPWHTVTMDLMVGLPTTSQGHDAIYVFVDKYSKMVHL 1081 APTSSTVDAQGCISLFIQHVYKLHGLPEVLISDRDPRFTAALFRKVMHKFSVQMKMSTAA 1141 HAQTDGQTERVNRVVGNMLRSYAKSNQSAWVDYLPTIEFAINSSPAASTKMAPFEVCNGR 1201 IPRQIGLPARLSGQSPVLPDELMDRLAKIQHEASSNLQQHFDKASSSEHIEPPFREGDEV 1261 YVSTHLLRNEDAKYRSNKLTPPYDGPFKIKNVLGPAHYRVDFSPLKVRIHDVINIKFLKR 1321 TKGTRSVHRPGPLQGFSDDVYAMERILRHRKHRGRLEYLVKWLGYPEYEATYVQAKDMIG 1381 SRCKRLLAEYQLQTAKADAAKERSLKRRSQKSNARHIRSKTSKR >Salpingoeca rosetta chromovirus-4 (Sroscv4) [RepBase Type:LTR/Gypsy; Repbase Reference Repeat:Gypsy-2_SPDB] 1 TGTAACGTCGCTCGCCTGCCTCCCCCTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 61 TCTCTCTCTCTCTCTCGGTCTCCCCGTTCCCTGCACCTTGCCCCGCTGTGTCCCATTGTT 121 TTCCCTTCCTTGCCCTTCGCGGCACCGTACTGCCTTGCATGTTCTTTGTTCTCCTAATGT 181 TTGATGTCATGTTTAGCCTGATTGACGTCATGTTTAACTCGTGAGTGTCGTATAGTAGCG 241 TTTGCCTGTGTCGTGTCACGCCGTGCCCAGTGCCTCGGAACTGCTTGCCTCTCGGCGGCG 301 ATCCCGAGCCCTTGGCACGGTACCGTCATCAACTAAGATGACGGCACGACACATGCCTGC 361 ATGCTGTGTTACGTCTGTTGCCCTTGTCTCTTGTTTTCCCCCTTGCTTAACCACAAGCAC 421 CCCTCTTGTTGCCTGCTAGCACGTGTGTGTTGCCCTGCACCCTGTTGTCGCTTATCTCAC 481 GTGATTGTCTGTGCCTTGTTCAGTTCTTTTGTTCCCTGGTTTACTTCACATCAGTACACA 541 GAACAAGCCACCGACACACCTCGACCACAGTCCCGTCACACTTGGTAGCGATTGTCACAC 601 ACACACACGTACTACGGACAAGCAGCAACATGGAGGAACAGTGGCACGAGATGATTGAGC 661 ACATGCGTGTGCTTACACAGACCATGGCGCAAGCGGCACAACTTAACCACGCTGTGCATG 721 AGTCTCAGCAGGGACCACAAGGACCAACGCGATCTACCGGTCGACCACGCGGGCCACCAC 781 CGCCGACCTTCTCGGGTGCAACGGACGAACGAGCTGACGACTTCCTGTTCTGCTTGGAAA 841 CCTTCGTCAGGTACCATCGCATCGACGACGACGACCAGCGCCTGCTACTTGCCATCTCCT 901 GCCTGCAAGGGCACGCCCTCACCTGGTACCGCAGCCTCGATCCAGCTCCGACGAACATGC 961 ATGAGCTTCAGGAGCAACTCCGCGCGAGTTTCAAGACCATCGATGAGCAACGCCAACTGC 1021 GGGACCAACTTCGTCGACTGCGCCAAGACGGCAACGTGCAGGACTACGTCTTCAAGTTCC 1081 GACAGCTGATGGTGCAGATCGACGACATGTCACGCCTGGACCGCATTGAAGCTTTCATCC 1141 ACGGACTGCGGCCGCGCACCCGCCAGGAAGTCTCCTTCCACGGACCCGACACTCTGGAGC 1201 AGGCCTACCAACTGGCCTCACGCTACGATCGCAACTACACCACGGCCAACTCGTCCTACC 1261 GCCGTGGAGCGCCCCCGACGCAGCCACCTAAGTTCGACGACCGCGCCATGGACATCGACG 1321 CCATCCGTGCCCAGCGCCCCCTCCGCCGACTGACTGACCAAGAGCGCGACGAGCTTCGGC 1381 GCCGTGGCGCCTGCTTCCGTTGCCGACGCGAAGGCCACCTCGCCGCCGACTGTCCGCTGA 1441 ACGCCAGCGACCGTCGGTCGGGAAACGGCACGCGCCAGTAGGGCCCGCCAGCCCTACTGG 1501 CGAGACGGAGGCGGTGTTGCTGCAAGCCACGGATGCAGTGACATCACAGGCACGCCTCCT 1561 TACCTTCCGTGGAACCATCGACGGCCGGCCGGCTAGGACCCTCATCGACCCCGGAAGCAG 1621 AATGAACGTCCTGTCCCGAGACTACGCCCTTCGCCATGGAATCGCCGTCCAACCACGCCA 1681 GTACCCAGTGGAGTTTGTCTTCGCCAATGGAACCAGGCATGTCAGCAAGGACGACACGCA 1741 GGAAGTGACCTTGCGCATTGGGACTCACCAGGAGCGACTGGTGTTCACCCTGTGTCAGCT 1801 GGGCAGCTTCGACGCCTTTCTCGGCATGCCCTGGCTGCAGACTTGGAACCCTGACATCGA 1861 CTGGAGGACGTCGACGGTGGTCCTCAAGACAGGACCGCTGCGCCCGAACCTGTGCCAGAT 1921 CACCCTAGAGACCCCCAAGATCCAAGGACCCCAGGACACCACCGACCAAGATGAGACCCC 1981 CAAGACCCAAGGACCCCAAGACACCAAGACCCAAGAGACCCAAGACACCGCCGACCAAGA 2041 TGAGACCCCCAAGACCCAAGGACCCCAGGACACCACCGACCAAGATGAGACCCCCAAGAC 2101 CCAAGGACCCCAAGACACCAAGACCCAAGAGACCCAAGACACCGCCGACCAAGATGAGAC 2161 CCCCAAGACCCAAGGACCCCAGGACACCACCGACCAAGATGAGACTCCCAAGACCCAAGG 2221 ACACCAAGACACCAAGACCCAAGAGACCCAAGACACCGACCTCAGCGACCAACCACCCTC 2281 CACGGACAACGCGACCATCAACCTCGTGAGCGCCAGGCGGATAGCCAAGGACCTGCGAGG 2341 GTCAGGAGTCGACGCAGCCTTCGTCCTTGTGCTCTCCATGGACACCACACCGTCACCCAG 2401 TGAGGACCCACGCACCAACGCCTTATTAGAGGAGTTCGCCGACGTGTTCCCCGAAGAGCT 2461 TCCAGGACTGCCGCCCCGCCGCGATATCGACCATGCCATCGACCTCAAGCCCGGAGCCAC 2521 GCCCCCCTCCAAGGCACCCTACCGCCTGTCAACGGACGAATTGAAGGAACTACGCACCCA 2581 ACTCGACGAACTCCTCGCCAAAGGCCTCATTGAGGCCAGCACAAGTCCTTACGGCGCCCC 2641 CATCCTCTTCGTCAAGAAGAAGGATGGGACCCGAAGGATGTGCATCGACTACCGACAGCT 2701 GAATGCCCAGACAGTCAAGGACTCGTACCCTCTTCCCCTCATTGATGACATCATCGACAG 2761 CCTCTGCGACGCCCGGATCTTCTCAACTCTCGACCTGCGCTCCGGTTATCATCAGGTGCG 2821 CATTCGCGCCGGGGACGAGGACAAGACGACCTTTCGCACTCGCTACGGCACCTTCCGATT 2881 CCTTGTGCTGCCCTTTGGCTTGACCAACGCACCCCCGACCTTCCAACGCCTCGTCAACAA 2941 CGTCTTCAAGCAGGAAATGGACAAGTTCATGGCACCCTACATCGACGACCTCGTCATCTA 3001 CTCCAAGAATGAGAAAGACCATGAGCAGCACCTCCGTCAGGTATTGCAGAAGCTCCGCGA 3061 CCATCGACTGTACTGCAAGGCGAGCAAGTGTCACCTGTTCCAGACGGAGGTGGAGTTCCT 3121 AGGCTTCATCGTGGGACAGGGCCACCTCAAGATGCACCCTGCCAAGGCGGACGCCGTCGA 3181 GAACTGGTCGACGCCGCAGAGCACAACCCAGCTGCGGTCCTTCCTAGGCCTAGCAAACTT 3241 CAACCGCCGCTTCATCGCCAACTACGCCAAGATCTGCGCCCCGCTCAACGACGCCCTCAA 3301 GAAGAACGGGTTCAAGTGGGGCCCGTCGCAGGAGGAGGCCTTCCGGGAGCTGAAGCGTCG 3361 TATGACACAAGCACCTGCACTCCGCATCCCTGACCAGCGCCAGCCATTTGAGGTGGCAAC 3421 CGACGCATCAGACCGAGCGATAGGCGCCGTCCTACTCCAAGATGGGCAGCCAGTCGCGTA 3481 CGAGTCCCGGAAACTCCAGGCCGCGGAGCTCAACTACCCAGTGCGGGACAAGGAGGCCCT 3541 CGCCTTGATCTACGCGCTGACCAAGTGGCGCGTGTACCTCCTCGACAAACGGACCACGAT 3601 CCTCACCGACCACCGCTCACTGACGAACATCACCACCCAGAAGACATTGAACGGCAGATG 3661 GGCGCGATGGATAGAGCTCCTGAACGACTACGACCTCGACATCCGTTACATCAAGGGCAA 3721 GACCAACGTAGCTGCCGACGCCGTTAGCAGGATCCCTGACTCAGACGCACAGGAGATCAC 3781 ATGCGCCGCCATCTCTACCGCGACGCCGGCGGACCTGGTCAAACGCATCAGCAACGACAT 3841 CGCGGAGGACGAGGAATTCGGCCCGATCTACAAGGCGCTGAAGAACCCCGACCAGACACC 3901 ACCGCCTGCCGTGGCGGCGAAGCTCAGCCGTTTCGGACTCAATGACGAAGACCTGCTGAT 3961 CTACCAGGAGCACCCGGAGCACCCGGAGGACATACCTCTGCGCTGGTGCATACCAGAGAC 4021 GGCACGCGTGCCGCTTCTGGCTGAGTTCCACGACACTCCGACAGCGGGCCACCAAGGAAT 4081 TCACCGCACCCACGAGGCGCTAGCGCGCCACTTCTACTGGCCCCGGATGCGGCGGGACGT 4141 GGAGCGCTATGTGCGGAGCTGCAAATCCTGCCAGCGCCACAAGCCGAGACAGGGCGCTGC 4201 CCCTGGTCCCCTGCAGCCCCTACCCGTTCCCCGAGAACCCTGGACCGATATCAGCCTCGA 4261 CCTCGTCACCGGACTACCCAGGACCAGGACAGGACAGGACGCCATCGTGGTCTTCGTCGA 4321 CAGGCTGACTAAACGGTGTCACCTGGCGGCGACTACTAGCAAGTGCACGGGCCGAGACGT 4381 GGCCAAGCTGTTCATCTCCCACGTGTTCCGACACCATGGACTTCCTGCCAGAGTTGTGTC 4441 TGATCGAGATCCCCGTTTCACCGGCGCCTTCTGGAAGGAGACCTTCCGCTTGCTGGGGTC 4501 CCGACTTCAATTCTCCACATCGCAGCACCCGCAGACCGACGGCCAAACAGAAAGGACGAA 4561 CCGCACCATGGAGCAGACCCTCCGCCACTACGTCAACTACCGCATGGACAACTGGGACTC 4621 ACTCCTCCCCGTGGTAGAGTTCGCCCTTAACAACAGCAAGAGCGACTCCACGGGCCAGTC 4681 TCCGTTCTTCCTAGAGACGGGCCGACACCCGATTATCCCAGCTACACTCGTCACCCGCCA 4741 GGCCATACGCCGCACGGACACACCTGCAGCCGAGGACTTCGTGGTGCGCCTCAAGAGCAT 4801 CATCACCGCCGCAAGAGACGCCCTCGCCCAGGCACAGGACAAGCAGAAGAGGTACGCCGA 4861 CCAGCGCCGCAGCGACGACATCAAATATAGTCCCGGCGATCAGGCATGGGTCACCGCTGA 4921 CCTCTTCGTCGACCAGGCCAACCAGCGACGACCCAAGGACAAGCTGAAGCCCCGCTGGCA 4981 AGGCCCCTTCACTGTCATCGACATGCCGTCGCGCACGACCGTGCGACTCCGGTTCCCCAG 5041 CCACGTGCGGGCGCACCCGGTCGTCAACGTCACCAAGACCAAGCCGTGTGTCAACAGCCC 5101 GTCAGACTTCAACACGCGCCCCAATGACGAACCACCACCCCTGCCGGACGGCGAATCGGA 5161 CGAATACGAGGTGGAACGCATCCTCGACGAGCGAGTCCGACGCGGCAAGAGGCAGTACCT 5221 GATCAAGTGGGCCGGCTACGACATCAACGACAGCACTTGGATCAACGAGGACCAGCTCAC 5281 ACGCGACGTGCGTTCACTGATCATGGAGTGGCATCAGGCCTCGCGCAACGCATCGGCTTG 5341 AGGGCAAGCCGTCTTAGAGAGGGGGAAGGTGTAACGTCGCTCGCCTGCCTCCCCCTGCCG 5401 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 5461 CGGTCTCCCCGTTCCCTGCACCTTGCCCCGCTGTGTCCCATTGTTTTCCCTTCCTTGCCC 5521 TTCGCGGCACCGTACTGCCTTGCATGTTCTTTGTTCTCCTAATGTTTGATGTCATGTTTA 5581 GCCTGATTGACGTCATGTTTAACTCGTGAGTGTCGTATAGTAGCGTTTGCCTGTGTCGTG 5641 TCACGCCGTGCCCAGTGCCTCGGAACTGCTTGCCTCTCGGCGGCGATCCCGAGCCCTTGG 5701 CACGGTACCGTCATCAACTAAGATGACGGCACGACACATGCCTGCATGCTGTGTTACGTC 5761 TGTTGCCCTTGTCTCTTGTTTTCCCCCTTGCTTAACCACAAGCACCCCTCTTGTTGCCTG 5821 CTAGCACGTGTGTGTTGCCCTGCACCCTGTTGTCGCTTATCTCACGTGATTGTCTGTGCC 5881 TTGTTCAGTTCTTTTGTTCCCTGGTTTACTTCGCATCAGTACACAGAACAAGCCACCGAC 5941 ACACCTCGACCACAGTCCCGTCACA Features 1-580 5' long terminal repeat 581-629 5' untranslated region 630-1478 Hypothetical Gag coding sequence 1460-1465 Ribosomal slippage site 1460-5338 Hypothetical Pol coding sequence 5339-5369 3' untranslated region 5370-5965 3' long terminal repeat Conceptual Protein Sequences >Hypothetical Gag 1 MEEQWHEMIEHMRVLTQTMAQAAQLNHAVHESQQGPQGPTRSTGRPRGPPPPTFSGATDE 61 RADDFLFCLETFVRYHRIDDDDQRLLLAISCLQGHALTWYRSLDPAPTNMHELQEQLRAS 121 FKTIDEQRQLRDQLRRLRQDGNVQDYVFKFRQLMVQIDDMSRLDRIEAFIHGLRPRTRQE 181 VSFHGPDTLEQAYQLASRYDRNYTTANSSYRRGAPPTQPPKFDDRAMDIDAIRAQRPLRR 241 LTDQERDELRRRGACFRCRREGHLAADCPLNASDRRSGNGTRQ >Hypothetical Pol 1 GKRHAPVGPASPTGETEAVLLQATDAVTSQARLLTFRGTIDGRPARTLIDPGSRMNVLSR 61 DYALRHGIAVQPRQYPVEFVFANGTRHVSKDDTQEVTLRIGTHQERLVFTLCQLGSFDAF 121 LGMPWLQTWNPDIDWRTSTVVLKTGPLRPNLCQITLETPKIQGPQDTTDQDETPKTQGPQ 181 DTKTQETQDTADQDETPKTQGPQDTTDQDETPKTQGPQDTKTQETQDTADQDETPKTQGP 241 QDTTDQDETPKTQGHQDTKTQETQDTDLSDQPPSTDNATINLVSARRIAKDLRGSGVDAA 301 FVLVLSMDTTPSPSEDPRTNALLEEFADVFPEELPGLPPRRDIDHAIDLKPGATPPSKAP 361 YRLSTDELKELRTQLDELLAKGLIEASTSPYGAPILFVKKKDGTRRMCIDYRQLNAQTVK 421 DSYPLPLIDDIIDSLCDARIFSTLDLRSGYHQVRIRAGDEDKTTFRTRYGTFRFLVLPFG 481 LTNAPPTFQRLVNNVFKQEMDKFMAPYIDDLVIYSKNEKDHEQHLRQVLQKLRDHRLYCK 541 ASKCHLFQTEVEFLGFIVGQGHLKMHPAKADAVENWSTPQSTTQLRSFLGLANFNRRFIA 601 NYAKICAPLNDALKKNGFKWGPSQEEAFRELKRRMTQAPALRIPDQRQPFEVATDASDRA 661 IGAVLLQDGQPVAYESRKLQAAELNYPVRDKEALALIYALTKWRVYLLDKRTTILTDHRS 721 LTNITTQKTLNGRWARWIELLNDYDLDIRYIKGKTNVAADAVSRIPDSDAQEITCAAIST 781 ATPADLVKRISNDIAEDEEFGPIYKALKNPDQTPPPAVAAKLSRFGLNDEDLLIYQEHPE 841 HPEDIPLRWCIPETARVPLLAEFHDTPTAGHQGIHRTHEALARHFYWPRMRRDVERYVRS 901 CKSCQRHKPRQGAAPGPLQPLPVPREPWTDISLDLVTGLPRTRTGQDAIVVFVDRLTKRC 961 HLAATTSKCTGRDVAKLFISHVFRHHGLPARVVSDRDPRFTGAFWKETFRLLGSRLQFST 1021 SQHPQTDGQTERTNRTMEQTLRHYVNYRMDNWDSLLPVVEFALNNSKSDSTGQSPFFLET 1081 GRHPIIPATLVTRQAIRRTDTPAAEDFVVRLKSIITAARDALAQAQDKQKRYADQRRSDD 1141 IKYSPGDQAWVTADLFVDQANQRRPKDKLKPRWQGPFTVIDMPSRTTVRLRFPSHVRAHP 1201 VVNVTKTKPCVNSPSDFNTRPNDEPPPLPDGESDEYEVERILDERVRRGKRQYLIKWAGY 1261 DINDSTWINEDQLTRDVRSLIMEWHQASRNASA >Salpingoeca rosetta chromovirus-5 (Sroscv5) [RepBase Type:LTR/Gypsy; Repbase Reference Repeat:Gypsy-3_ECa_1p] 1 TGTAAGCACTTGTCGACTCTGTCGACAGTGCTTTTCTGTCCCACTTCTTTACTACTCTTT 61 TCACACGTCTTTCGTGACCGAGCCTTGTCGCATGTCTTTCACCACTTCTCCCACCTCATC 121 CCAAATTACATTGCTCCGCAGTGTTGCATTGCTCTTAGCAGTATCCTTTGCTCTTGGCTT 181 GTTTGTTGTCACGCTACGTGGCAACCCTCCTTTGTTTTGTTTTCGTTTTCCTTTGTCTAA 241 AGCCCCTACGGCTTTTGCTCTCGTACTCGTGTTTCTCCCTGCTTGTTCTTTCTGTGCACC 301 CGCTCATGCCCTTTTGTGCGAGTGTCACGTTCGTCTTGTTCATTCTTTTGTTTTACTGTT 361 TGACCACGACATCGACCACAGTACACTGACACAACCAAAGAGCTTACATGGTAGCGATTG 421 CACAAAGTCCACCGACCATTGAGTGATTGAGACCCTACCTTTGCAAACCACAACACACCA 481 CATACCCACCCACAGCCGACCACATCAACTTCTCGCTCAACCGTGCCTTTCGACACACGA 541 CAAGATGGACTTCGTTTTTCGCAAGTTCTCGGGATCGAAGACCGAGGACGTCCATGACTG 601 GGCCGACGATACCAAGCTCCTGCTGGAGGTCGCCTCCGCGACAATGGACGCCCGCCAAGT 661 GAAGCTCCATCTCTACCTGCAACTCGACGGGAGAGCCAAGTCCTTCGCCAAGGAGTTCAT 721 GAGTGACTCCGCAGTCAAGGCGGACGACCTCGTGGACAAGATCGTCGACCGCTTCCACAA 781 CCCATCCCGACAGCTACAGCTGGTCTTCGAGCTCCGCGCCATCAGGCAAACCAAGGACGT 841 TCAAGCCTACAACGGAGACTTCAACCGCGTGGCGGACCAACTGTCGGAGCGGAGCGAGGT 901 CTTTCTGCTGGCCTTCTACCTGATGGGACTCCACCCGACGATTCGACAAGTGGTATCGGT 961 GGCCAGCCCATCGACCCTGGTGCAAGCAATGAAGATCGCCGAGGACGCGGACCAAGCCAA 1021 GGATGTATCCGGGACCCACTTCGCGCGCCGCACGTCAGTCTCTTCAAGCGGCACCTCCAA 1081 GTACCAGGCAAACAAGCAGGCCCCGCGACGTGACGATGGACCACGCAAGCGCCTGCCACC 1141 GCTGACACCGGAGGAGCGCCAGCGACTGATGGCCGAGGGCGCCTGCTTCCGTTGCCGCAA 1201 GCCCGGCCACGGCTATGCTCAGTGTCCGGGAAACGGCCCGCTTCAGTGAGGGGTCTCGCG 1261 ACCCTCCTGAAGCGGACCACCCCACGCGAGCCACCACCCACCACAACGACAACCCCAGAC 1321 ACACACACAGACACAGACACAGCCACAGCCACAGCGTGCAGAGATCTACACGCGCACACG 1381 GACACAGACACAGACACAGCTACAGCGTGCAGAGACCTACACGCGCACACGGACACAGAC 1441 ACAGCAGCAGAGTCGTCGGACTCAGCAACCATGGATCAAGTCACTGCCGCAGCACACACA 1501 GCATTAGCCACGGTGGCAAACCTAGATGCGCAAACAAACGCCGACACTGACACAGACACA 1561 GACATGGACACAGACGCAGCAACCACAACCACAGACACAGACACCCACACAGACCAGGAC 1621 GCACATACAGACACAACCACACACACCGTCACAGACACAGCTACAGCGTGCAGAGACCTA 1681 CACGCCCACAGACACACACACGCAGACACAGTGACGACGCCCGCCATAGCAACAACTGCG 1741 GGGGTAGACCCACACAACGTCGCCGGCTCACAATCACCGCTTCCCTCCAGTGCGTCATGG 1801 AGGCCACCACCAACAACCGTGCGGAAGCCTCGACGATCCAGCCGCCTCGCACAAAAGGCG 1861 TACCTACGAGCATGGCAAGACAACCCACTGCTGGCCATGACGAGACAGCCCCCGCCAAGC 1921 CTCCGCAAGGAGCAGACCTCCCGCCGCGCGGGCGCTGCACGACCGGGACGCCGGAACGGA 1981 GATACCGATGGAGATGACGGCCAGGAGTACTCCGCCATCACCCTCACCGTTCGCACCGCA 2041 CCCACAACAAGAAGCCAGCCACCGACCAACTACCTAAGCGCAGTTACCACAGCATCAACC 2101 CCGGCCTACGTTCCCCAACTACGTTTTCGTGCAACGATCAACGGTGCCCCTTGCAACATC 2161 CTGTTGGACTCGGGGTGCACAACCGACGTGGTGGCAGAGGAGTTTGCCTTGAAACACCTT 2221 AGGGTGACACAGGTACGCCAAGACACACAGGTCACGTACGGAGACGGATCCCACGTCTCC 2281 AGATCGAGCATGACAACGGCTACCCTCAAGGTGCAAGGCCTGACGACGACGCGGGACTTC 2341 CTCGTAATTCCAATTGGGGGAGTCGACGCCGTGTTGGGCAGACCTTTCCTCAAGGACTAT 2401 GCTGCGCGCGTTGACCACATCAATGATCAAGTTCACCTCACAGATCCCACCAACCCACGA 2461 CAACCACTGCGTAATCCGGCACCCATGGAGCACAGCAACACAGACAAGGAAATGGCAGGC 2521 CGCGTCACTCTTCAAACAACACCAGCCACGACACGGGACGACCGCGACAACGACCCAGCA 2581 CTGTATCTGATATCCGCAACAGCAGTCGGCAAGGCGGCACGCGACCCAGACCAGCAACTG 2641 TTCCTAATCCACGTGCGTCCGGACGACATCCTCATCGACGAGCCTCAAGAACTGCCGACG 2701 CTCAAGGACCAACACCCGTTCGTTAAGGCTTTTCAAGACGTGTTCCCAGATAAGCTGCCA 2761 GACGGTCTGCCACCAGAACGAGCAGTAGATCACAAGATTCCCACGACAGAGGACCACCGG 2821 CCTTATGCGCGCTCCCCTTACCGCCTGTCGCCACGCGAAAGGGTTGAGCTGAGGCGCCAG 2881 CTGCAGGAGCTCACACAGGCCGGCCACATTCGACCTAGCTCAGGTCCATATGGGGCGCCG 2941 GTGCTGCTGGTGAGGAAAGCCGACAACAGCCTCAGGCTGTGCGTCGACTACAGAGCCCTC 3001 AACCGTGAAACGGTGCGCGACGCGTACCCGCTTCCGCGGATCCAGGACGTGCTAGACCAG 3061 CTGGCCTCAGCCACAGTCTTCTCGTCACTGGATCTGAGATCGGGCTACCACCAAGTGAGA 3121 GTGGCTGAGGAGGACGTGGGCAAGACTGCGTTCAACACCCCGTACGGATCGTTCGAATGG 3181 TTGGTTCTTCCGTTTGGTCTCACGTCCGCACCAGGTACCTTCCAGAGGCTCATGAATGAA 3241 GTTCTTCGGGACTTCATTGGAGACTTTGTCCAGGTCTACCTCGACGATGTGATCATCTAC 3301 AGTCGTAACATAGACGAGCACAAGGACCACGTGCACCAAGTACTCCGCCAGCTCCGCCGC 3361 CACCGCCTGTATGGCAAGGCGTCCAAATGCCAGTGGGCGCAAGACCAGATCAAGTTCCTC 3421 GGACACGTCGTGTCGGGACGCGGAGTGGAAACGGACCCTGACAAGATAGCAGCGGTCACC 3481 GAGTGGCCTCAGCCCAAGAACGTGCGCGACGTGCGCTCGTTTCTCGGATTCTGCAACTTC 3541 TACCGCCGATTCGTCAAGGACTACGCATCGGTGGCCGCCCCCCTCACGGATCTCATGCAC 3601 AAGGATAGAGCGTGGGAGTTCAACGACAAGGAGCGCAGTGCTTTCGACGCGCTCAAGACG 3661 GCAATGACAACGGCACCTGTGCTAGCCTACCCCGACGCAAGCCAGAAATACGTCGTGCAG 3721 ACCGACGCCTCGGAGACAGCAGTAGGAGGAGTCCTCATGCAGAAGGGCCGTCCGGTTGCT 3781 TTCGAATCGCGACGATACAGAGGAGCCGAACAGAGATACGACGTCAGAGACAAGGAGGCA 3841 CTGGCAATTGTCCATTGCTTGAGACAGTGGCGCCATTACCTTTACGGAGCAGACTTTGAC 3901 ATCAACACCGACCACAGAACATTGCAGTACCTCCAGACGCAGAAGGACATCAAGCCGAGA 3961 CACGCCCGATGGATGGAGCTGCTGTCGGAGTTTGGACGACTCGACATCCAGTACATCCCA 4021 GGCAAGCGTAATCAGGTGGCTGACGCCCTCAGTAGGAACCTCATGGACGTCAACCTCGCG 4081 ACGATCTCAACCTCGTCGCCGACCAGCGCCCTTTTGGAGCAGATCCGCCAAGCAACACGG 4141 AAGATGCCAGGCCGGGAGCGCCAGCGCCTGCAGCAGCCACGTTTCAGCGAGGAAGAGGGC 4201 ATCTTCTACCTCACCCAGCAACAGCGACGGCGAGTTTACGTCCCCAGAGACAACCGTCTG 4261 CGCACCAAGATCCTGAAGGAGGCCCACGACGCCTCAACCCGCGGACACCGAGCAGCTTCT 4321 CAAACGCACCTGTATGTCAGCCAGCGCTTTTACTGGCCGAACCAGCTGCAAGATGCAATC 4381 AAGTATACGGCGTCCTGCGACCAATGCCAACGGAACAAGTACGACACCAGAGCCAAGGCC 4441 GGCCTTCTTCACCCGTTGCCGGTGCCGCCACACAACTGGCACACGGTATCCATGGACTTC 4501 ATCACCGGGTTGCCCAGCACTGACGGCGGACTGGACGCCATACTGGTGGTCGTGGACAAG 4561 CTCTCAGAGCGCACCCACCTGCTTGCGACGACTAAGACTGTCACGGCCCAGGATACACCG 4621 CGGCTTTTCTTCAAGGAGATCGTGCGACTACACGGGGTGCCGGCACACATCGTCTCGGAC 4681 AGAGACGTTCGTTTCACCTCCACGTTCTGGACTGAGCTGTTCCGCTGTACGGGGACCAGC 4741 TTGGACATGTCATCGGCCGATCATGCGCAGACGGACGGGCAGACGGAGAGGCAGATACGG 4801 GTGGTGCGCGAGGCACTGCGGTCGGCAGTCAACTACGGACAGCGGGACTGGTCCTCACAC 4861 CTAGCGGCCATGGAGTTCGCCATCAACGCTGCTGTCTCCTCGACTACAGGCTTCTCTCCT 4921 TTCCAGCTGGACACCGGCCAACAACCGCTAACGCCCCTGGATCTGGCGGCCCCCTCCTCA 4981 CCAACGGCCGCTAGGTCTGCGGGCGCCGAGCAATTTATACAGGACTTCCGGTCGCGACTG 5041 CAAGCAGCCAAGGACAACATCGCCAAGGCACAGGACCTGCAGACCCTCCACTACAACAAG 5101 CGTCGCAGACCCTGCGACATCAAGGTGGGAGACAAGGTGCTCCTCCTCGCGGATGCCGTA 5161 CTCAGCGACACGGAACGACAACGCCCCAGCAAGAAACTGCGACACCGATACCTGGGACCC 5221 TTCGTGGTCCTGTCCCAAGACAGGCCGGATTCCTTCCGGCTTGGGCTACCGTCAAGATAC 5281 CGTTGTCACCCGGTATTCCACTGCAGCAAGCTCAAGAAGTTCGTCCCCAACCCACGCAAG 5341 TTCGCCAGCAGGCGCCAACACCGACCGCGGCCCATCGTGCACGACGGCCACGTCAAGTTC 5401 ATCGTCAACAAGATCCTCGATCATCGCTTCAAGCACCGCACTCTCCAGTTCCTAGTGGAT 5461 TGGGAGGGGTACGGACCCGATGCAAGGACCTGGGAGCCCACCAAGCACGTCGCAGGCTGC 5521 GACCAGCTCCAGGACTACCTCAACGACCACCCGGAGCTCCTCACGGCCGTTTGACCAGTC 5581 CAGCCCAGCTAGCTGGTTGTTTGTAATGTTGACTGTTTTGTCTGAAAGGAAGAGAGGGTG 5641 GTTAGTTGAAGGGGGAGGGTGAGTGTAAGCACTTGTCGACTCTGTCGACAGTGCTTTTCT 5701 GTCCCACTTCTTTACTACTCTTTTCACACGTCTTTCGTGACCGAGCCTTGTCGCATGTCT 5761 TTCACCACTTCTCCCACCTCATCCCAAATTACATTGCTCCGCAGTGTTGCATTGCTCTTA 5821 GCAGTATCCTTTGCTCTTGGCTTGTTTGTTGTCACGCTACGTGGCAACCCTCCTTTGTTT 5881 TGTTTTCGTTTTCCTTTGTCTAAAGCCCCTACGGCTTTTGCTCTCGTACTCGTGTTTCTC 5941 CCTGCTTGTTCTTTCTGTGCACCCGCTCATGCCCTTTTGTGCGAGTGTCACGTTCGTCTT 6001 GTTCATTCTTTTGTTTTACTGTTTGACCACGACATCGACCACAGTACACTGACACAACCA 6061 AAGAGCTTACA Features 1-408 5' long terminal repeat 409-544 5' untranslated region 545-1246 Hypothetical Gag coding sequence 1228-1233 Ribosomal slippage site 1228-5571 Hypothetical Pol coding sequence 5572-5663 3' untranslated region 5664-6071 3' long terminal repeat Conceptual Protein Sequences >Hypothetical Gag 1 MDFVFRKFSGSKTEDVHDWADDTKLLLEVASATMDARQVKLHLYLQLDGRAKSFAKEFMS 61 DSAVKADDLVDKIVDRFHNPSRQLQLVFELRAIRQTKDVQAYNGDFNRVADQLSERSEVF 121 LLAFYLMGLHPTIRQVVSVASPSTLVQAMKIAEDADQAKDVSGTHFARRTSVSSSGTSKY 181 QANKQAPRRDDGPRKRLPPLTPEERQRLMAEGACFRCRKPGHGYAQCPGNGPLQ >Hypothetical Pol 1 GKRPASVRGLATLLKRTTPREPPPTTTTTPDTHTDTDTATATACRDLHAHTDTDTDTATA 61 CRDLHAHTDTDTAAESSDSATMDQVTAAAHTALATVANLDAQTNADTDTDTDMDTDAATT 121 TTDTDTHTDQDAHTDTTTHTVTDTATACRDLHAHRHTHADTVTTPAIATTAGVDPHNVAG 181 SQSPLPSSASWRPPPTTVRKPRRSSRLAQKAYLRAWQDNPLLAMTRQPPPSLRKEQTSRR 241 AGAARPGRRNGDTDGDDGQEYSAITLTVRTAPTTRSQPPTNYLSAVTTASTPAYVPQLRF 301 RATINGAPCNILLDSGCTTDVVAEEFALKHLRVTQVRQDTQVTYGDGSHVSRSSMTTATL 361 KVQGLTTTRDFLVIPIGGVDAVLGRPFLKDYAARVDHINDQVHLTDPTNPRQPLRNPAPM 421 EHSNTDKEMAGRVTLQTTPATTRDDRDNDPALYLISATAVGKAARDPDQQLFLIHVRPDD 481 ILIDEPQELPTLKDQHPFVKAFQDVFPDKLPDGLPPERAVDHKIPTTEDHRPYARSPYRL 541 SPRERVELRRQLQELTQAGHIRPSSGPYGAPVLLVRKADNSLRLCVDYRALNRETVRDAY 601 PLPRIQDVLDQLASATVFSSLDLRSGYHQVRVAEEDVGKTAFNTPYGSFEWLVLPFGLTS 661 APGTFQRLMNEVLRDFIGDFVQVYLDDVIIYSRNIDEHKDHVHQVLRQLRRHRLYGKASK 721 CQWAQDQIKFLGHVVSGRGVETDPDKIAAVTEWPQPKNVRDVRSFLGFCNFYRRFVKDYA 781 SVAAPLTDLMHKDRAWEFNDKERSAFDALKTAMTTAPVLAYPDASQKYVVQTDASETAVG 841 GVLMQKGRPVAFESRRYRGAEQRYDVRDKEALAIVHCLRQWRHYLYGADFDINTDHRTLQ 901 YLQTQKDIKPRHARWMELLSEFGRLDIQYIPGKRNQVADALSRNLMDVNLATISTSSPTS 961 ALLEQIRQATRKMPGRERQRLQQPRFSEEEGIFYLTQQQRRRVYVPRDNRLRTKILKEAH 1021 DASTRGHRAASQTHLYVSQRFYWPNQLQDAIKYTASCDQCQRNKYDTRAKAGLLHPLPVP 1081 PHNWHTVSMDFITGLPSTDGGLDAILVVVDKLSERTHLLATTKTVTAQDTPRLFFKEIVR 1141 LHGVPAHIVSDRDVRFTSTFWTELFRCTGTSLDMSSADHAQTDGQTERQIRVVREALRSA 1201 VNYGQRDWSSHLAAMEFAINAAVSSTTGFSPFQLDTGQQPLTPLDLAAPSSPTAARSAGA 1261 EQFIQDFRSRLQAAKDNIAKAQDLQTLHYNKRRRPCDIKVGDKVLLLADAVLSDTERQRP 1321 SKKLRHRYLGPFVVLSQDRPDSFRLGLPSRYRCHPVFHCSKLKKFVPNPRKFASRRQHRP 1381 RPIVHDGHVKFIVNKILDHRFKHRTLQFLVDWEGYGPDARTWEPTKHVAGCDQLQDYLND 1441 HPELLTAV >Salpingoeca rosetta gypsy-like element-1 (Srosgyp1) [RepBase Type:LTR/Gypsy; Repbase Reference Repeat:Gypsy1-1_Lch_po] 1 TGTTGTGTGGGCGATATCCGTCTTTGGCGGATAAGCCCACAGTTTGCTTTGTTAGAGGGA 61 TTTGTGTGAGTAGTTGTTAAGCCCACAGTTTGCTCTGTTAGAGGTTTTTGTGTGGTTACA 121 TTTAACCCCACAATTTGGCTTAGCAGAGGAGTTTGTGTGGTTAACTCGGTGTTGACAACG 181 GTCACATACCTTTGAGTGTTTGCGTGCATGCCATGCCTGACATTGCCACCATGCCTTGTC 241 GCCCGCATGCATGCTTGTTCTTTTTGCATTTCTTGCATGCCACTTCGTTGTATAAGTGGC 301 GCAAGAGTGCTCTGTTTGTTCATTCTCTCTTGTGTTGCCCGAACCAATACACACCACCAA 361 CTGCATCACAACATTTGGTGACCACGCACATCTTGGGGTGGGAGTGCTCGTGTTTTCTCG 421 CTTGTGGTTCGTTTCTCGTGATCTCTTTTGGCTCTCCCACCACTATCTCCCTTCTCGCTT 481 GCAGGTGAAGGCCTCTCGAACTCATCTGGACCATTGGTTGTCCTTCAACAAGTGGATTTC 541 GACCTGCTACCGTCGCGCACGTTTTCACGCGGTTCGTGCTCCTGTTCATGACCTGTGTTC 601 CACCTCTTTTTGCCTCTTCTCGTGATTCTTTTTGCGTTTGCCACCATTGTACGTGTGCTG 661 GCTCTTGTGTGCATCCTTTGCCTTTGTCAGAACTTTCCCCGTTCTCGTGCAGTGAGTGAC 721 TTTCACATCCGTGCGTGTGTGTGCGTTCGTGCTTTTCATAAGCCCCTACTTTCCTCTTGA 781 TCTTGTGTGTGCTTGTGCTTCCCTTCTGTTGGTGCTATTGCGTCCATTCTTCGCACCAGC 841 ATCCGTGCACACGATCTCTGTCATACGCCTACACCTGTATACCGTTTACCTTGTGTCCTT 901 TTGCGGCATTCGTGTTTCTTGTCTCTTTTGAGTGCCGCTTGCGTTGTGCGCACCTTTCGT 961 CATGGAGACCCGATCGAAGGCGTCTTCGTCATCTGCGTCCACAGCGGCGCGTTCGTCGGC 1021 CCCACCCGCATCCGCACGGGCCATCCTGCAGCTACCGGTGGAGAAACTCGTGCCCTTCTC 1081 CTCGATTGACACCAGGAGGTGGCTGCGTCGCTTCGAGACCCTGTGTGGCGCGCTGGCTGT 1141 TGACCCAGCGCTGGCCATCGCATGCCATGTGCATCCCTCGATCCTCGACGCCCTCCTGGA 1201 CAAGTTCCCCGACCTCACGGCTGTGCGCTTCAGGGCCGTTTCCGACTACATCATCGCTAC 1261 GTTCGACTCTCACCGCGACACGGCAGCCGTGCGACGCCAGCTGCAGACGCGTCGCCAAGG 1321 CCCCTTGGAGCCGGTTGGCGCGTTCGCCGTCGCCATTACGGCGCTCACCACGGAGCTGGA 1381 GGAGTCGGCTGACACCTACGTCGACTTGTTCCTCTCTGGGCTTCGCGACGACGTTGCTGT 1441 GCTGCTTGGAGTTGCTGCGCCCTCATCGTTTGCCGAGGCTGTGACCCTGGCACAGAAGGC 1501 GGAGGCGCGCCTCGCCGCACGACGTGGCATACCCACCCAGCAGCATCAGCACCAGCACGA 1561 CGCTGCGTTCGTCTCTGCTCCCCCACGGCAGCAGCCACGCCGCTCCTTCGCCGGCAACCA 1621 GTCCCGGCGCGACGACAACCCTCGCATCGTCCGCTGCTTCTACTGCAAGAAACCCGGTCA 1681 CGTGATCAAGGACTGCATGAAGCGCAAGGCCGCCGAGCAGCGGCGTAACGGGCCACAGCG 1741 GAGTCGCCGCGGAGTGCACGCCGTTGACACGGATGACATTGAGACGCCGCCCGACGCTGA 1801 CGTGTGTGCCGCACAGGTGCGCGGTGCGGTGTCGCTGAGGGTCCCCATCGACGTCAACGG 1861 CGACCGCATCAGCGCCCTCATAGACACGGGCGCCAGCGTCACGCTCATGTCCAGCGACGT 1921 GTATCGCCGGGGCCGCGACGGCCCGCTCAACTCTTCCGACGCCGTTCTCCGCACCGCTGA 1981 TCAGGGTGTGCTCAAGGTGCTCGGAACGACCGACTGCCTCTTCACCATCGGCACGGCGCA 2041 GCTTCGTCACAGCGTCATCGTCGTTGATCGCCTCGCCCATGCTGTGCTGCTGGGTGCCGA 2101 CATCCTCAGCGCCATGCGCGCCCTCGTTGACGTTGCCGATCGCTGCCTAATCCTGCCAGA 2161 GGGCAACGCCGTGCAAGCGGACGTCAACGCAGTGGACACCGCTGATGCACCCACCCAAGT 2221 CGCTGCGTCGATGCTCTCGCGCGGCCAACAGCACCAGCTCCAGCGGCTGCTCGAGGAGTT 2281 TAAGGACGCGTTCGCCAAGCCTGGAGAGCCCTTGACCAAGGCCATGCTCCCCAGCATGCG 2341 CATCGAGACAGGCGACACACCACCTGTAGCACGCCGCCCCTACCGCCTCTCTCACCACGA 2401 GAGCGAGGTGGTCGAGCGCATCGTCAAGGACCACATCGCTGCTGGCATAGTGCGTCCGTC 2461 CTTCTCGCCATGGGCGTCCCCCGTGATCCTCATCAAGAAGAAGACAGGCGAGTACCGGCT 2521 TGTCGTTGACTATCGCCGCTTGAACGCCGTCAGCGTTCCCGACGCTTACCCGCTCCCGCG 2581 CCTGGACGACACCCTGGAGGCCATGGCGGGTGCCAAGTTCTTCAGTAGCCTGGACCTGGC 2641 CTCTGCGTACCACCAAGTACCGCTGCACCCCGACGACTGCTCCAAGACCGCCTTCGTCAC 2701 CAAGAACGGTGTGTTTGAATACACCGTCGTCCCCTTCGGTCTGCGCAATGCACCGGGCCA 2761 TTTCCAGCGCTGTATTAACACCGTACTCGCTGACGTCGCCGGTGTGAGCATGTACCTGGA 2821 CGACATCGTCATCTTCTCGCCGACCTTCGACGCTCATCTGGCCACTCTGCGCACTGTCCT 2881 CGAGCGCCTTCGTGCGGTCAACCTACAGCTGCGGCGCGACAAGTGCAGCTTCATCCAGGA 2941 CGAGCTGGAGTATCTCGGGCACCTGGTGTCCAAGCACGGGGTCAAGCCCAACCCGGCCAA 3001 GATCGACGCCATCTTCAGCATGCCGGCGCCCAAGGACGTGCGCGAGCTGCGCGCCTTTCT 3061 CGGCATGGCTGGGTTCTACCGCCGTTTTGTCGACAAGTTCGCCGAGATCGGGGCACCGCT 3121 GTACGCGCTACTTCGTGACGGCACTGAGTTCAAGTTTGGCGAGCCGCAGCAGGTGGCGTT 3181 CCGTCGCCTGAAGGCTGCGCTCGCCTCGTCCCCGGTGCTGGTCTACCCTGACTTCGCCCG 3241 CCCGTTCACCCTCGCCACCGACGCATCCGGTGTGGGTCTCGGTGCTGTGCTGCAGCAGCG 3301 CCAGGACGGCGACGGCAAGCTTCGCCCCGTCGCCTTCATCTCGCGCGTACTGAACAAGGC 3361 TGAACGCAAGTACTCAGTGACAGAGCAGGAGTGTCTTGCGCTGGTCTGGGCGGTCAAGAA 3421 GTTCCGCCCCTACCTCCATGGCCAGCGGTTCACCGTCGTCACCGACCACCGCGCCCTGCA 3481 GTGGCTTCGCAACCTCAAGGACCCGACTGGCCGCTTGGGCCGCTGGGCGCTCGCCCTTCA 3541 GGACATGGACTTCGACGTCGTTCACAAGCCAGGCACAGAGAACGTCGTGGCTGACGCCTT 3601 GTCCCGCCTCATCGCCCCGGTGCAGCCCGACCACGCTGACGTCGAGCCTGGCGAGGAAGG 3661 CGATGACGATGAGGAAGGCCTCGATCCACTTCTTCAGAACATGGGCGCCGACGCAGACGT 3721 GAGACGTGCGGTGCCATCCCGCATCACCACTGCTGCCCTGCTGCGAGAGCAGGCCAAGGA 3781 TCCCTTCTGCAAGGCTGTGACAGCCTACCTGCACGACGCGACGGTGCCAGACTTCGGCGC 3841 TCTGGCTGTTCCGGAGGCACGGTTCTGGAAGCAGATTGACGACTTCACCATCAGCGAGGT 3901 CTCGGGACTGCTGCTCGCCAAGGACAAGATCGTTGTGCCGGAGACTCTGCGCAAGAGCGT 3961 CTTCCTGAAGGTGCACGCTGATCCGACATCCGGTCACTTGGGCGTGCAGCGCACCCACGA 4021 CCGCGCCTCCCGCAACTTCTTCTGGCCGGGCCTTTACGCCGATGTCAAGACGTGGACGCT 4081 TCAGTGCGGGTCGTGCCTGCGCGCCAAGGACACGGCGCCCCGCAAGCTGCCACTTGGCAC 4141 AGTGGTCGCTACCCACCCGCTGGACGTCGTCGCTATGGATGTTCTCGGCCCCCTGCCTGT 4201 GACTGACGCAGGCAACAAGTACGTCATCGTGGCATGCGACCTCTTCACGCGGTTCATGGT 4261 GACAGCTGCGGTGCCAGACCAGAAGACGCCGCGTGTCGTCGACTTCGTTGTCAACAGGGT 4321 CGTGGCGACCCTCGGCACGCCTCGCAAGTTCCTCACGGACCAGGGCCCCAACTTCCGCTC 4381 CAACGACGCCAAGGCCTTCTACCACGCGCTTGGTGCCAAGAAGGTGTGGACGACGCCCTA 4441 CCATCCACAGACGAACGGGACGGTGGAGCGGTTCAACCGAACCTTGACGCGGATGCTCGC 4501 CGCGTTCGTCGAGTCCAACCAGGCCGACTGGGACACCTACCTGGGCCTCGTGACTTCCGC 4561 GTACAACACCACCTTCCATGCCGCCGTGGGCAATACGCCCTTCTTCCTCATGTTCGGCCG 4621 GGAGCCACTCGACCCAGGTCTGCCCGCTGAACCAGATGCCGCCACACCAGCAGACCAGGC 4681 CCATCACGTCGCCCGAGCAACGGAGGTGCTAGCTGAGGCCCATGAGCTTGTGCGGGACTT 4741 CATCGTGCAGCGCCGATCCGAGCGCGACAGCGCCAACGCCGACAAGCCCGACCCGCCAGC 4801 TTTCAGCACCAACGATCGCGTACTGCTCTACACGCCGCGTGTCAAGCCTGGTACGACCAC 4861 GAAGCTCGCTCGTCTCTGGCGCGGCCCGTACGTCGTGACCAGGAAGCTGTCCCAGTGGAA 4921 CTACGGCATCATTCCGGAAGCAGGTGGACCAGCTCAAGTCGTCCACGTCGCGAGGCTGAA 4981 GGCGTACACGGCCCAAGACGACACGACGCCGGCTGATGCTCTCGACGAGGACGTCGACGC 5041 TGATGTGTTGCTTGATTGATATGTTGCATTGTCTTGGTGGGGAGGAATGTTGTGTGGGCG 5101 ATATCCGTCTTTGGCGGATAAGCCCACAGTTTGCTTTGTTAGAGGGATTTGTGTGAGTAG 5161 TTGTTAAGCCCACAGTTTGCTCTGTTAGAGGTTTTTGTGTGGTTACATTTAACCCCACAA 5221 TTTGGCTTAGCAGAGGAGTTTGTGTGGTTAACTCGGTGTTGACAACGGTCACATACCTTT 5281 GAGTGTTTGCGTGCATGCCATGCCTGACATTGCCACCATGCCTTGTCGCCCGCATGCATG 5341 CTTGTTCTTTTTGCATTTCTTGCATGCCACTTCGTTGTATAAGTGGCGCAAGAGTGCTCT 5401 GTTTGTTCATTCTCTCTTGTGTTGCCCGAACCAATACACACCACCAACTGCATCACAACA Features 1-373 5' long terminal repeat 374-961 5' untranslated region 962-5056 Hypothetical Gag-Pol coding sequence 5057-5087 3' untranslated region 5088-5460 3' long terminal repeat Conceptual Protein Sequences >Hypothetical Gag-Pol 1 METRSKASSSSASTAARSSAPPASARAILQLPVEKLVPFSSIDTRRWLRRFETLCGALAV 61 DPALAIACHVHPSILDALLDKFPDLTAVRFRAVSDYIIATFDSHRDTAAVRRQLQTRRQG 121 PLEPVGAFAVAITALTTELEESADTYVDLFLSGLRDDVAVLLGVAAPSSFAEAVTLAQKA 181 EARLAARRGIPTQQHQHQHDAAFVSAPPRQQPRRSFAGNQSRRDDNPRIVRCFYCKKPGH 241 VIKDCMKRKAAEQRRNGPQRSRRGVHAVDTDDIETPPDADVCAAQVRGAVSLRVPIDVNG 301 DRISALIDTGASVTLMSSDVYRRGRDGPLNSSDAVLRTADQGVLKVLGTTDCLFTIGTAQ 361 LRHSVIVVDRLAHAVLLGADILSAMRALVDVADRCLILPEGNAVQADVNAVDTADAPTQV 421 AASMLSRGQQHQLQRLLEEFKDAFAKPGEPLTKAMLPSMRIETGDTPPVARRPYRLSHHE 481 SEVVERIVKDHIAAGIVRPSFSPWASPVILIKKKTGEYRLVVDYRRLNAVSVPDAYPLPR 541 LDDTLEAMAGAKFFSSLDLASAYHQVPLHPDDCSKTAFVTKNGVFEYTVVPFGLRNAPGH 601 FQRCINTVLADVAGVSMYLDDIVIFSPTFDAHLATLRTVLERLRAVNLQLRRDKCSFIQD 661 ELEYLGHLVSKHGVKPNPAKIDAIFSMPAPKDVRELRAFLGMAGFYRRFVDKFAEIGAPL 721 YALLRDGTEFKFGEPQQVAFRRLKAALASSPVLVYPDFARPFTLATDASGVGLGAVLQQR 781 QDGDGKLRPVAFISRVLNKAERKYSVTEQECLALVWAVKKFRPYLHGQRFTVVTDHRALQ 841 WLRNLKDPTGRLGRWALALQDMDFDVVHKPGTENVVADALSRLIAPVQPDHADVEPGEEG 901 DDDEEGLDPLLQNMGADADVRRAVPSRITTAALLREQAKDPFCKAVTAYLHDATVPDFGA 961 LAVPEARFWKQIDDFTISEVSGLLLAKDKIVVPETLRKSVFLKVHADPTSGHLGVQRTHD 1021 RASRNFFWPGLYADVKTWTLQCGSCLRAKDTAPRKLPLGTVVATHPLDVVAMDVLGPLPV 1081 TDAGNKYVIVACDLFTRFMVTAAVPDQKTPRVVDFVVNRVVATLGTPRKFLTDQGPNFRS 1141 NDAKAFYHALGAKKVWTTPYHPQTNGTVERFNRTLTRMLAAFVESNQADWDTYLGLVTSA 1201 YNTTFHAAVGNTPFFLMFGREPLDPGLPAEPDAATPADQAHHVARATEVLAEAHELVRDF 1261 IVQRRSERDSANADKPDPPAFSTNDRVLLYTPRVKPGTTTKLARLWRGPYVVTRKLSQWN 1321 YGIIPEAGGPAQVVHVARLKAYTAQDDTTPADALDEDVDADVLLD >Salpingoeca rosetta gypsy-like element-2 (Srosgyp2) [RepBase Type:LTR/Gypsy; Repbase Reference Repeat:Gypsy-16_PM_pol] 1 TGTTGTGAGGCGTGTGTGGTCATGCCTTTCACTGGCATGCTCATCGTTTGATGTACATGT 61 TTGAATTACCCCGCTGCTTTGGTTTTCAACATCTCTGTATGTCGTGTCGCGGTCTTGTGG 121 GGATTTCCCCACAAGGCTGCTGTGTGCTTGTTGGTGTCGACTTTCCTTCCATATCTTGGC 181 AGATTTTCCTCTTGTTGTTCTTGAGCTGAGTTGTTCCACGCGAGTCACCGTTCGCTTGTG 241 CTTTCCTCTGCTCCCGCTTGTGGTGTTCCTGCTGCACACGTTCGTGTGCCTGTTCCCTGC 301 GCTTGCTGCCCGTCTCTTCTGCCTCCGGGCCCGTCTGCTCTCCCCTCCTTGCACATTAAA 361 CCCACACACGCACTTCCCCTTAACATTTGGTGACCATTGAGCCCTGTCTCTCCTTCTGTC 421 GATGGTGCGATCCGTTCGTTTGTTTGTGTGCATTGAGCTCCGTTGTTCTGCATCAAGCGC 481 CTCCGCTTTCACTTGTGTCTCTCTTGCTCTCTCTGGCTCCCTCTTGCTCTGTTCTGTTCA 541 GCTGCAGGTATGACTGTTGGAACACGTTCTTCTACGGCCCAACCACGGCGCACCCCCAAG 601 GTGCCGAATCCGAGCGAGGAGGATGAGGACGCCTTCGAGGACGCTTCGTCGGCGCCCGCA 661 TCTTCGACAGCCGCAACACCACGCACGCCGCAGAGCGTCCCTGCGTCCGCAGCACGCTTG 721 CCCATCGATAAGATGGCGGGTTTTAAGTGCTCGGACGTCACACGCTGGGTGCGTCGGTTC 781 AAGACGTTGTGCGCTGCTGTTGGCGCGCACCCTGGTCGCGTGCTTCCACTCTACGTCTCC 841 GCTGAGGTCCTCGACATGTTGCTCGACAGTGACGTTGACCTCGATGACTTTGAGGCGGTT 901 GCTGCCCTCCTAGAGCGCACCTACGGTGTGCAGAAGGACCTCCTGTCTCTGCGACGCCGG 961 CTGCAGACCAGGCGCCAGCAGCGAGGCGAGGCTGTGGCTGTGTTCGCTACTGCAATTTCC 1021 CGGCTGTGCGCGGACCTCGAGGAGAGTGTCGACAACTACATTGGCCTCTTTCTCGCAGGG 1081 CTCCACGAGGACATCGCGGTGCTCCTGGGCCTGCAGCAGTTCGATACCTTTGCTGCTGCT 1141 GTGTCGCAGGCACGCCTTGCTGAGGCACGTGTTGCGTCTCGGCGAGGCCACGCGCGCACC 1201 GAGGAGGGTGTGGCCACGGTTGAGGCTGAGCAGGATCGCGGCAAGCGTTCTGCAGATGGC 1261 CGCATCGTGTGCTTTTACTGCCGCACTCCCGGTCATCGCATCCGCGACTGTCGCAAGCGC 1321 ATGCTGGCTGACAAGCGTCGCCAGCAGCCGCATCGTCCGCAGCCTGGCCGCACTGCCGCT 1381 GTGGTGCAGGCCACGCACGACTCCTTTGAGTCTGAGGCTGCGTCGGTTGCGGTTGCTTCG 1441 ACGAGCGCCCGGGACGTGTTGCCACCGTTCGTGGTTGAGGGCACTTTCAACGGTGCCAAC 1501 ACCATGATGCTGGTTGACACTGGTGCGCTTGTTTCCCTCGTGTCTGCAGACGTTGCTGAT 1561 AGCGCTGGCGTGGGGCCGCTGCGCCCTAGCGGCATTGTGCTGCGAGGTGCTAACCAGCAG 1621 CGCATCCACGTCAAGGGTTGCATGAGCCAAGTGCCCCTGTGCATCGATGGCGTGCAGCTG 1681 CAGCATGACTTCATCGTGGCGGAGCGTCTTGCTCACCCCGTCATCTTGGGTGTGGAGCTG 1741 CTCTCGGCCCTCGGTGCGGTCATCGACGTGCGCCAGCGTCGCCTCGTGTTTCACCGCGGC 1801 ACCCACCGCAGCAGCACCTCCGCTCGACTCCTCGAGTCATCGGCGTGTGTCGTCACACAC 1861 GAAGCTGATGAGGTGGCTGCCGTGCAGGACGATGCCCCGGCTGTGCTCACGCAGGAGCAG 1921 CAGTCCGAGGTGGAGCAGCTGCTGGACAAGCACAGCGCTGCGTTTGCTTCTGCCGCCACC 1981 GTGGGCGTTCCAGCGAAGCTACCACCGATGCGCATCGACACGGGTGATCACCCACCGGTG 2041 TCCCGGCACCCATACCGCCGCTCGGCCACTGAGCGTGCGGTCATCGAGGAGACTGTGCAG 2101 CAGTTCCTCAAGGATGGGGTGATCAAGCCCAGCTTCTCGCCGTGGGCATCCCCAGTGGTG 2161 CTGGTGAAGAAGAAGAGTGGGGAATGGCGCTTCTGTGTCGATTACCGCAAACTGAACGCG 2221 GTGACCGTCCCAGACGCCTTCCCCATGCCGCGCCTCGATGACACCCTTGACAACATGGGT 2281 GGCGCGAGCTTCTTCACTACGCTCGACCTTGCGTCAGCGTACCACCAGTGCCCGCTGGCG 2341 GAGGATGCGCGCCAGAAGACGGCGTTCATCACCCACACGGGCCTGTATGAGTTCCAGGTG 2401 GTGCCGTTTGGCCTGCGCAACGCCCCGGCGTTCTTCCAACGGTCCATGCAGGCCGCGCTG 2461 GCTGATGTTCGCAACGCGTGCATCTACCTGGACGACATCCTGTTGTTCAGCTCCAGCTTT 2521 GACGAGCACATCGCCCTGCTCGACAAGGTGCTGCAGCGCCTGCAGGAGGTTGGCTTGCGC 2581 CTCAAGCGTGAAAAATGCCACTTCCTGCAACGCCGCACGGAGTACCTTGGCCACATCGTC 2641 TCGGCTGACGGTGTGCGCCCCGACCCGGCGAAGCTGGATGGTATCTCCAAGCTTGCGCCT 2701 CCGTCGTCAGTGGAGGACATCCGCCGCGTGTTGGGCATGATTGGCTTCTATCGCCGGTTC 2761 ATTCCCCAGTTTGCCCGCATTGCTGCGCCCCTTTATCGGCTGCTGAAGAAGGATGTGCCC 2821 TTTGACTTCGGAGAGCAGCAGCTGGCCGCCTTCAACGAGCTTCGCGCTGAGCTCTGCCGC 2881 GCGCCAGTCCTGGCCTATCCCGACTTCACGCGTGCGTTCCGCATCACCACGGATGCTTCC 2941 GGCACAGGCCTTGGCGCCGTGCTGTCGCAAGCCGGCGACGATGGCGTGCACCACCCGGTG 3001 GCGTTCATCAGCCGGGCGCTGAACGCGGCGGAGAAAAACTACTCCGTCAGCGAGCAGGAG 3061 TGCCTTGGTGTCGTCTGGGCCATCCGCAAGTTCCGACCGTACGTCTTTGCGACCACGTTT 3121 GAGGTCGTCACGGACCACGCTGCCCTGCGTTGGCTGCGATCCATCCGTGATCCGCGCGGT 3181 CGCCTTGGACGCTGGAGCCTCGAGCTGCAGGACTGCGACTTTGAGGTCATTCACCGACCA 3241 GGCAGCAGCAACGTGGTTGCCGATGCGCTCTCCCGCCTTCCTCGCGATGCTGTTGAGCAG 3301 TCGCCAGCCGAGCCCGCGGTTGACGTGGTTGCCGCACCGGTCCTGCCGCAACAACTCGAC 3361 GACGATGACGACGACGCGGATGAGGGCGAGAGCGGTGACGACGAGGACCCGCTCTTGGCT 3421 GAGCCAGACCAACCTACGGTTGTGCGAAGCCGCACGCCCGCCTGGCTCACGCCCAATGCC 3481 ATCAAGGCTGGACAGCAGGCAGACCCGCTCTGCGTTGCAGTGCGCGCAGCTCGGGAGGGG 3541 AAGGAGGCAGTTGACCTGAGCGCTGCCGCCCTCCCCGCCAAGCAGTTTTGGTCCAGCCTG 3601 CACCACTTTCGCGATGTCGGTGGCATCATCCGGTTTGACAACCAGGCCGTCCTGCCTGCC 3661 AGCCTCCTCAAGCAGGCACTGCGACAGGCCCATGACCACCCCTCGTCTGGCCACCTGGGC 3721 ATCGAGCGCACGTACCGCCGCGTGTCAGCGCAGTTCTACCTGCCTGGCCTCTACGCCAGA 3781 ACCAAGGAGTACGTTCAGTGCTGCGTCCCCTGCCAGCGTGTGAAGCAGAAGCCGCCGACC 3841 GCCCTGCCAATGGGCCGCGTCGTCGCATCCCGGCCAATGGAGCTGGTGGCCATGGACTTT 3901 CTCGGCCCGCTGCCGGCCTCTGCCCGAGGCAACAAGCACTTGTTGGTCATCAGCGATGTC 3961 TTCACCAAGTTTGTCATGGCCGTCCCGCTGCGTGACCAGAAGGCTGCCACCGTCGTCGAC 4021 GCGCTCACCACGCACTTCTTCGCCACGCACGGCATCCCAGAGAAGCTGTTGAGCGACCAG 4081 GGCCCCAGCTTCCGCGCCAAAGACACGGCGGACCTGTTTCGTCTGCTGCGTGTGCGAAAG 4141 ATCTGGACCAGCCCGTACCACCCGCAGACCGATGGCATGGTCGAGCGCTGGAACCGCACC 4201 GTTTGCAAGATGCTGGGCACCCTCGTCAACACGCGCCAGACGGACTGGGACAAGTTCGTC 4261 GGCCTCGTCACCCTGGCCTACAACACCAGCTTCCACCCAACCGTCGGCAACACGCCGTAC 4321 TTCCTGCGGTTCGGCTGCGAGCCTCCGACCAGCGTCACCAGCATCCTGTCCGACATACCC 4381 GAAGACGTGTCCGGCCACATGGTGGACGTGTTGAGCGCCCTGCACCAGGCTCACGCCCGC 4441 GCCAAGGAGCTGCTGGCGGATGCGACGCAGGCCCGCGAGGAGCTCAACCAGCACAAGGCC 4501 GATAAGTACAAGGAGTTCAAGGCTGGCGACCTTGTGCTTCTCCATGTGCCGCGCGTCCCG 4561 ACCGGCGCAAAGCTCAAACTGGGCAAGCCCTGGCGCGGGCCCTTCAAGGTTGCCAAGAAG 4621 AACTCCGCCGTCAACTACACCATCGTGCCGATGAGCGGCGGCCCGGGAAAGGTGATTCAC 4681 GCCAGTCGTCTCAAGGCCTTCCGAGGAGATCCGACCAGCGCCGCCGAGGACGATGCCGCC 4741 GATGTTCTTTTGGGGGACTGAGTGCGCGCTTGGAGGGGAGGAATGTTGTGAGGCGTGTGT 4801 GGTCATGCCTTTCACTGGCATGCTCATCGTTTGATGTACATGTTTGAATTACCCCGCTGC 4861 TTTGGTTTTCAACATCTCTGTATGTCGTGTCGCGGTCTTGTGGGGATTTCCCCACAAGGC 4921 TGCTGTGTGCTTGTTGGTGTCGACTTTCCTTCCATATCTTGGCAGATTTTCCTCTTGTTG 4981 TTCTTGAGCTGAGTTGTTCCACGCGAGTCACCGTTCGCTTGTGCTTTCCTCTGCTCCCGC 5041 TTGTGGTGTTCCTGCTGCACACGTTCGTGTGCCTGTTCCCTGCGCTTGCTGCCCGTCTCT 5101 TCTGCCTCCGGGCCCGTCTGCTCTCCCCTCCTTGCACATTAAACCCACACACGCACTTCC 5161 CCCTTAACA Features 1-385 5' long terminal repeat 386-549 5' untranslated region 550-4758 Hypothetical Gag-Pol coding sequence 4759-4783 3' untranslated region 4784-5169 3' long terminal repeat Conceptual Protein Sequences >Hypothetical Gag-Pol 1 MTVGTRSSTAQPRRTPKVPNPSEEDEDAFEDASSAPASSTAATPRTPQSVPASAARLPID 61 KMAGFKCSDVTRWVRRFKTLCAAVGAHPGRVLPLYVSAEVLDMLLDSDVDLDDFEAVAAL 121 LERTYGVQKDLLSLRRRLQTRRQQRGEAVAVFATAISRLCADLEESVDNYIGLFLAGLHE 181 DIAVLLGLQQFDTFAAAVSQARLAEARVASRRGHARTEEGVATVEAEQDRGKRSADGRIV 241 CFYCRTPGHRIRDCRKRMLADKRRQQPHRPQPGRTAAVVQATHDSFESEAASVAVASTSA 301 RDVLPPFVVEGTFNGANTMMLVDTGALVSLVSADVADSAGVGPLRPSGIVLRGANQQRIH 361 VKGCMSQVPLCIDGVQLQHDFIVAERLAHPVILGVELLSALGAVIDVRQRRLVFHRGTHR 421 SSTSARLLESSACVVTHEADEVAAVQDDAPAVLTQEQQSEVEQLLDKHSAAFASAATVGV 481 PAKLPPMRIDTGDHPPVSRHPYRRSATERAVIEETVQQFLKDGVIKPSFSPWASPVVLVK 541 KKSGEWRFCVDYRKLNAVTVPDAFPMPRLDDTLDNMGGASFFTTLDLASAYHQCPLAEDA 601 RQKTAFITHTGLYEFQVVPFGLRNAPAFFQRSMQAALADVRNACIYLDDILLFSSSFDEH 661 IALLDKVLQRLQEVGLRLKREKCHFLQRRTEYLGHIVSADGVRPDPAKLDGISKLAPPSS 721 VEDIRRVLGMIGFYRRFIPQFARIAAPLYRLLKKDVPFDFGEQQLAAFNELRAELCRAPV 781 LAYPDFTRAFRITTDASGTGLGAVLSQAGDDGVHHPVAFISRALNAAEKNYSVSEQECLG 841 VVWAIRKFRPYVFATTFEVVTDHAALRWLRSIRDPRGRLGRWSLELQDCDFEVIHRPGSS 901 NVVADALSRLPRDAVEQSPAEPAVDVVAAPVLPQQLDDDDDDADEGESGDDEDPLLAEPD 961 QPTVVRSRTPAWLTPNAIKAGQQADPLCVAVRAAREGKEAVDLSAAALPAKQFWSSLHHF 1021 RDVGGIIRFDNQAVLPASLLKQALRQAHDHPSSGHLGIERTYRRVSAQFYLPGLYARTKE 1081 YVQCCVPCQRVKQKPPTALPMGRVVASRPMELVAMDFLGPLPASARGNKHLLVISDVFTK 1141 FVMAVPLRDQKAATVVDALTTHFFATHGIPEKLLSDQGPSFRAKDTADLFRLLRVRKIWT 1201 SPYHPQTDGMVERWNRTVCKMLGTLVNTRQTDWDKFVGLVTLAYNTSFHPTVGNTPYFLR 1261 FGCEPPTSVTSILSDIPEDVSGHMVDVLSALHQAHARAKELLADATQAREELNQHKADKY 1321 KEFKAGDLVLLHVPRVPTGAKLKLGKPWRGPFKVAKKNSAVNYTIVPMSGGPGKVIHASR 1381 LKAFRGDPTSAAEDDAADVLLGD >Salpingoeca rosetta pseudovirus-1 (Srospv1) [RepBase Type:LTR/Gypsy; Repbase Reference Repeat:Copia-14_SB] 1 TGTGGAGAGACGAGTCCGTGTCATGTGCATGTGGATGTGTTTGCTTCTGTCCGGAAAGCT 61 GGAGACAGCATGAATAGTTCTGCGATCCAACCGGTTCTGCTGTGGTTGTGACACTTCCGT 121 TTTCTTCGTTCAAGCTGTGTGTTGCTTCCACACAAAGTGCGGTATTGCATATGTTTGCGT 181 GTTGTTCTTCGTCCAATCTCTTTGTTGTTTCTGCCACAATGCGGGAGTGCTTCACTTGTG 241 TTCATTCATCCTTATTCCCGTCTGTCTTCCACATCACACAGTAAACCCACACAAACACAC 301 GCAGACAAGTGAGCATACCACTACGCTAACGCACGCACACACAAACACACGCACATCCTC 361 TGCTTGTCTTGCGTTCGACATGTCACAGATTATGAGACCCATGGACCTGTCCCTGGCTTC 421 CCTTCCCCACTTCAACGGGAGTCCAGATCAACTTCGCCTCTTCCAGCTCAACTTCAAACG 481 GTATGTGAAACGAACACTACCCGGGTCGGAGAAGGTGCTTGAGGGTGATGAGGCCGCCTC 541 CACGGAAGAGAAGGAGCACGTCCACCTCAGCTTGATGTTAGCGCTGGAGAACTGTGAGGA 601 GGCGGTGGCCTTGATTGTGCGAGGGCATGATGATCCAACAGCAGCTTGGCGCGCACTCGA 661 CAACTACTACAAGCACGCGAACGATGAGCGAAAGAAGGCGACCTACCTCGCAGAGTTCAT 721 TGCTGCAACAGCTTGGCAGAACGATGACAGCCAAGACTCCTACAGCAAGAGAGTGTTGAC 781 GGCCTACGAGAAGATGAAGGCTGTGTACGAGATGAGTGAGGCTATGACGAAAGAAACAAC 841 AGCATCCTGGATTCTGTTTGCCTGTCTCCACAGCAGCAAGCCCACTGACTTCATGAAGGA 901 GTTCAAAGAGCCAACAGCAACAGTGAATGAGACGATGATGAAGGTTCTGCACGCGTCTCC 961 ACCACAGCAACCAGCATCAGCGTTTGATGACAAGGTGTTTCGCATGTCTGCCAAGCGAAG 1021 GGCTGGTGAGGGAAAGGCACGACAACAGCGCCAAAAGTCCATCTGCAAGTGGTGTGGCAA 1081 GTTTGGTTACCACAAGGAGCACGAGTGCTACCACAACCCAGCCAACGCTCAAGGACAGAC 1141 CGGTGGGCGTGGTGGTGATGGCGTGCGCCAAGGACTGCATCATCAGCAACAACAGCAACA 1201 TCATCGTCGTCAGCCTGTGGCACAACGGCTAGAGCCAAGGCATGTGTCACTCAAGATGGC 1261 CACGTCACCTCGAGACTCGAGCAACCGCATCAGCCTCCCAGGCAACGCTATTGGCGTGGA 1321 CACGCAGTCATCTGTGCACATCTTCGCCAGCCCTGGGGCATTCACGCATCTGTACCCACT 1381 GACGCCACCAGCAAAAGTCCATGGACTTGGTGGAGAGGTGACAGTGGAGCAAGCAGGCCA 1441 GGTCGTGCTGCAGACGAAGGGAGTCCGGGGTGAGGATGTCGTTGTGACCATCAACAACGT 1501 CATGTTTCTTCCCACATTTGGGTTCAACATCCTCTCGGCCGGCAGGCTCGTCGACTCAGG 1561 CCTCAAGGTGTGCCTGGACAAGAAGACGTCGGCGGTTGCTTGTCCTGACGGCTCGATCCT 1621 GACATTGCATCAGCACGACGACAAGACGTACTACTTTGACGCGCAGCTGGGCAAGCCCGA 1681 GGTCATGCAGAAGTGCAACGCAGTGTACACACTGCACACGTGGCATCGTCGCCTCGGCCA 1741 TCGCTCCCTTCACACGATTCGCAAGTCTCTGGAGGAGCAGAATGTGCGGTTTAGCGACAG 1801 CACGGGCAGCAGCAGCGACCCTGCGTGCGACCCCAGCTCGGCCACATGTGAGGGCTGCCT 1861 GGCCTTCAAGACGGTGAAGAAGCCCATCAGCAAGCAGGCAGTTCGAGATGCCGAAAGCCC 1921 GGGCGACACGCTGCACCTCGACCTTCTTGGGCCCTTCCCACCGTCGATCCAGGGCAGCAA 1981 GTACGCGCTGGTTTGGCTAGACGAGAGGACCCGGTTCATGGACTGCACCTATGTCAAGGC 2041 CAAGAGCGAGGCTGCAGATGCGCTTCGCCACTTCGTTGCAACGACGCCAATACCAGTTGA 2101 CCGTGGCACCCTCGTTCAAACGGACAGCGATCCCGTCTTCACGTCTCGGCGTTTCGTGCA 2161 AACGGCAAACGAGCTTGGCCTTCGCCTTCGCTACAGTCCGCCACATGTGCACGAGCACAA 2221 CGGGCTTGTGGAGCGAAGCATTCGCACGCTGAAGGAGTCTGCCGCTGCCATGCTGCACAC 2281 GGCACCACTGCCGCAGCACCTCAAGGACAAGCTCTGGTCTGCTGCGCTTGGACACTCTGC 2341 ATGGGTGTACAACCTTCTTCCGCACTCCCAACTGGGCATGTCACCGTACCAGGCTCTCTT 2401 CGCCAAGCCTTCGCCACTGCAGCACGTGCGCGTCTTCGGCTGCAAGGCGTTCGTGTATGA 2461 CCACGTCCACACGGACAAGAGCAAGGCCTTTCCCCGACGGGCCATGGAAGGCTTCTATGT 2521 TGGCTTCGACACGCGATGCAACGCGCATCGCATCTACGTCAAGGCAACTGGGCGAGTGAG 2581 GTCCTCCATCCACGTTGACTTCCTGGAAGAGGTTGACTGCACGAGTCAAGGGGGTGCTTT 2641 ACCGACATCACCACTCACAGGCAGCAACGGCACCAGCACTGTGCAGAACCTATGGGTGAT 2701 GCCAGCAGCAACAGCATCAACACCTGACCCCATGCGGCAGGGCGACGAGAACACACCTGA 2761 CCCCATGCGGCAGGGCGACAGCGGCGGCGCACAAACATCTGCACCACTCGCGCAATCAGC 2821 ACCCACGGCACAGCAGAAGACAAGCTGTGCCGTCAACAGCAAGCATCCTGACTCGTCAAC 2881 GGCAGACGACGGCAGTGATGACGATGGCGATGGCGATCACAGCGACGACAGTGACGGCTA 2941 CGAGACCGACATCCTCTGCCTGCGGACTACCCTGTTGAAGAATGCGATGGTACAGACGCA 3001 CCAGCCACCGCAGCAGCCGGTCCCCAAGACATGGCGGGACGCCATGGCCTCTGCACACAA 3061 GAGCAAGTGGCAGGAGGCCTTCGTCAAGGAGTGGAGTAACATGATTCGGCACGATGTCTT 3121 CGACATCGTTGACCAGCGCACTCTTCCCATGGGCGTGCGACCAATACCGTCCAAGCTCGT 3181 CTTTGCTGTGAAACACAAACCGGACGGCAGTATTGTCCACAAAGTCCGGTTTGTTTGCTG 3241 CGGCAACCGGCAGACGGAGGACACATACGCAGATGTATTTTCGCCCACGACACGCTTCGA 3301 GGCTCTGCGCACCTTTCTCGCTGCTACAGCCCAGCGACACATGCTGCTGTGCCAGTTCGA 3361 TGTGTCTGCGGCTTTTCTCCATGCCGAGCTCGACATGACAAACGTGTTTGTGCGTCCGCC 3421 GCAGGCAGCGAACCTCCCTGCCGGGTCTGTGCTGAAGCTGCGCAAGAGCCTCTATGGCCT 3481 GCGCCAGGCGCCGAAGCTGTGGTACGCATCTGTCTGGAAGACGATTGGCGGCAGCGGCTT 3541 CCAGCGTTTGCGGTCCGACGCCTGCATCTTCGTCAACCAGGATCGCACAGTCATGATTTG 3601 CGTGCACGTCGACGACTTCCTTGTGGCGGCAACGACACAGGAGCACATGGACCGTGCAGA 3661 GGCTGTGCTTGCAGCCAACTACGACCTCAAGAACTTGGGCGCGCCACGACAATACCTCAG 3721 CATTGCGATCTCCTATGACAGAGAACGCGGCGTTATGACGCTGAACCAGCACGACTACAT 3781 CCAGACTGTGCTGAAGCAAGAAGGCCTGGAGGACTGCAAGGCGAAGGCAACTCCACTCCC 3841 CGTCAAGATGAAGCTCGTGCCGGTGGAACAAGCCGAGGTCGACGTTCGTCACTACCAGAG 3901 CATCATTGGCAGTCTGCTGTATCTCGCAGTGACGACGCGTCCCGACATCAGCTACGCCAC 3961 ATCCGTGCTCTCCAGATTTATCCAGCAACCCGGCAAGCAGCACCTACACGCGGCCAGACA 4021 TGTCTGCAAGTACCTACGGGGCACGGCGGCTCTGGCAATCAAGTACAGTGCGGGTGATTC 4081 GCTTCAACTCCTTGGCTACACAGACGCAAGTCACATGTCTGACCCCTACACGTCGAAGGG 4141 GCATGGAGGCCACTTGTTCACCATCGCCGGTGGCCCTGTGACATGGCTGTCCAAGAGGCT 4201 GCCTCTCGTCACAACATCATCGGCGGAGACAGAGTACGTCGCCGCTGCGCGCGCAGCACA 4261 GGCTGCGGTGTACCTGCGACAACTCCTCCAGGAGCTGGGCTTCGACGTCGGCACCACACC 4321 ACTCCACATGGACAGCCAGTCTGCCATGTGCATTGCTACCAATCCCGTGGCCAAGGGCGG 4381 CTCCAAACACATACGGCTGCGTTATCACCTTCTGCGCGAGCTCATTGGCGAAGGCGTCGT 4441 CAAGGCAGTGTATGAACCCGGCACAAAGCTGCTTGCAGACATGCTGACGAAGGCCCTGCC 4501 TCGTCCATCTCTGACGCAGTGCCGAGAGCAAGTGCTGCATGCGAGTTGAGGGGGTGTGTG 4561 GAGAGACGAGTCCGTGTCATGTGCATGTGGATGTGTTTGCTCATGTCCGGAAAGCTGGAG 4621 ACAGCATGAATAGTTCTGCGATCCAACCGGTTCTGCTGTGGTTGTGACACTTCCGTTTTC 4681 TTCGTTGAAGCTGTGTGTTGCTTCCACACAAAGTGCGGTATTGCATATGTTTGCGTGTTG 4741 TTCTTCGTCCAATCTCTTTGTTGTTTCTGCCACAATGCGGGAGTGCTTCACTTGTGTTCA 4801 TTCATCCTTGTTCCCGTCTGTCTTCCACATCACACAGTAAACCCACACAAACACACGCAG 4861 ACAAGTGAGCATACCACTACGCTAACGCACGCACACACAAACACACGCACATCCTCTGCT 4921 TGTCTTGCGTTCGACATGTCACA Features 1-387 5' long terminal repeat 380-4546 Hypothetical Gag-Pol coding sequence 4547-4556 3' untranslated region 4557-4943 3' long terminal repeat Conceptual Protein Sequences Hypothetical Gag-Pol 1 MSQIMRPMDLSLASLPHFNGSPDQLRLFQLNFKRYVKRTLPGSEKVLEGDEAASTEEKEH 61 VHLSLMLALENCEEAVALIVRGHDDPTAAWRALDNYYKHANDERKKATYLAEFIAATAWQ 121 NDDSQDSYSKRVLTAYEKMKAVYEMSEAMTKETTASWILFACLHSSKPTDFMKEFKEPTA 181 TVNETMMKVLHASPPQQPASAFDDKVFRMSAKRRAGEGKARQQRQKSICKWCGKFGYHKE 241 HECYHNPANAQGQTGGRGGDGVRQGLHHQQQQQHHRRQPVAQRLEPRHVSLKMATSPRDS 301 SNRISLPGNAIGVDTQSSVHIFASPGAFTHLYPLTPPAKVHGLGGEVTVEQAGQVVLQTK 361 GVRGEDVVVTINNVMFLPTFGFNILSAGRLVDSGLKVCLDKKTSAVACPDGSILTLHQHD 421 DKTYYFDAQLGKPEVMQKCNAVYTLHTWHRRLGHRSLHTIRKSLEEQNVRFSDSTGSSSD 481 PACDPSSATCEGCLAFKTVKKPISKQAVRDAESPGDTLHLDLLGPFPPSIQGSKYALVWL 541 DERTRFMDCTYVKAKSEAADALRHFVATTPIPVDRGTLVQTDSDPVFTSRRFVQTANELG 601 LRLRYSPPHVHEHNGLVERSIRTLKESAAAMLHTAPLPQHLKDKLWSAALGHSAWVYNLL 661 PHSQLGMSPYQALFAKPSPLQHVRVFGCKAFVYDHVHTDKSKAFPRRAMEGFYVGFDTRC 721 NAHRIYVKATGRVRSSIHVDFLEEVDCTSQGGALPTSPLTGSNGTSTVQNLWVMPAATAS 781 TPDPMRQGDENTPDPMRQGDSGGAQTSAPLAQSAPTAQQKTSCAVNSKHPDSSTADDGSD 841 DDGDGDHSDDSDGYETDILCLRTTLLKNAMVQTHQPPQQPVPKTWRDAMASAHKSKWQEA 901 FVKEWSNMIRHDVFDIVDQRTLPMGVRPIPSKLVFAVKHKPDGSIVHKVRFVCCGNRQTE 961 DTYADVFSPTTRFEALRTFLAATAQRHMLLCQFDVSAAFLHAELDMTNVFVRPPQAANLP 1021 AGSVLKLRKSLYGLRQAPKLWYASVWKTIGGSGFQRLRSDACIFVNQDRTVMICVHVDDF 1081 LVAATTQEHMDRAEAVLAANYDLKNLGAPRQYLSIAISYDRERGVMTLNQHDYIQTVLKQ 1141 EGLEDCKAKATPLPVKMKLVPVEQAEVDVRHYQSIIGSLLYLAVTTRPDISYATSVLSRF 1201 IQQPGKQHLHAARHVCKYLRGTAALAIKYSAGDSLQLLGYTDASHMSDPYTSKGHGGHLF 1261 TIAGGPVTWLSKRLPLVTTSSAETEYVAAARAAQAAVYLRQLLQELGFDVGTTPLHMDSQ 1321 SAMCIATNPVAKGGSKHIRLRYHLLRELIGEGVVKAVYEPGTKLLADMLTKALPRPSLTQ 1381 CREQVLHAS >Salpingoeca rosetta pseudovirus-2 (Srospv2) [RepBase Type:LTR/Gypsy; Repbase Reference Repeat:Copia4_DR] 1 TGTTGAGAGTCAGTGAGTTTCTGTTTTGTGTTGAGTCCTTCCTAATTTGCCTTCTCATGT 61 GGTTTTGTCTTGTTTGCCAACAACACCTGCTTTGTGGTTTTTCCGTTGACAAACATTCCT 121 TTCTCTCTGCTGGCATGTGTGCCAACTGCCTCTCCTCTCCTCCTCCTTCTGCACACGTGA 181 GTTGTGTGTCATGTGTGCCATGTGTGTGTGCATGCCCGTCATGCTTGGCAAATGCCATGT 241 GTGCGTGCCATGCAGTGTTGTGAAGTGTTGTCTGTTGTGTATGCTTGCCTGCAAGCATTC 301 ATGCCATGCTTAGCATTGCTCTGCGCGCATGTATGCATGCTGCTCATTGTTTAGATTGTT 361 TGTGTTCGCGCACACGCTGCCCATGTCGCCTTGGCAGCGTCATTGACTGTGTGTGCACTT 421 GTCTAGTGTTTGTTTGAGCGTGCTGCCCGAGTTGATTTGGCAGCAGCTTGCTGTGCTTGT 481 TCATTCTCCTTGTGTTCTTGTTTGTTGCGTTTGCCTACAGTAAACACACACACACCACCT 541 GTCGTGTCTCAACAGATTATGAGACCCAGCCACTCCTGATCATCATCGCCACTTGTCTCA 601 CACTCGCTTGTGCTTCTTCTCTCCCTTCTGCTTGTTCCCCTCTCTTGTTTCTCCATCACC 661 CTTCTTGAGCGTGCAGTATGTCTGACCCGTCGGACCACGTCGTTTCCACGCCAGGATTCA 721 AGATGGACCTGCCCAAGTTCTCTGGCTCGCCCGGCACCTTTCATGCGTGGAGCATTCGCA 781 TGAAGATGGCGCTCAAGCTCCGCGGCGACGACGTCTGGGCAGCTGTGGAGGCAGGAGCAT 841 CGTCATCGGGAGGTCCAAGCTCAGCGACACGCTCAAGTGCAAGGAGACCGACAGCAGGAG 901 ATCACGCCAACCTCACCGCTGCAAACCTCATCGCGTCCACGCTCTCAGGCTACCCCCTTC 961 TCCTCTTCACCAACGGAGAAGCAGACGTCAACGCCGGCCAAGGATGGGCCCGGCTCAAGG 1021 ACCACTACGCTTCGCAGGACCGCCTCCGCATCGCAGAGCTCAAGGAGGCGCAGCTTCACG 1081 TCCCCTGCGGCAACCTCGCCCGCTTCTTCGAGCGACACATGGAGCTGCAGCAGCAGTTGC 1141 AGGACGCAGGCGTGCGCCAGGACAACGAGGACCTCTTCACCATCGTCTGGAAGCAGCTGC 1201 CACGCTGGACAGCCCCGCTCACGCTTCCCTACTTTGCCAGTGGCCGCTTTCCCTCCCTCC 1261 TCGAGCTCAGCATCAGGCTGCAGCAGCTGGAGCAGCAGATGCGTGGTTCACGCACACAGC 1321 CGCAGGCAGGCGGCTTCATGGCAAGCGCACCGCCACGCAGAGGTGGAAGACGCGGCTTCT 1381 CCAACAACAGCAACAACCACGGACGCCAGGGACGCAACAATGGCAACAGCAACGGCAACA 1441 GCAACGGCAAGGGGCGCCGCTTCCGTGGCAACTGTCACTACTGTGGCAAGTATGGACACC 1501 GTGCAGCAGAGTGTCGCAAGAAGCAACGCGACAACGGAGCAACAGGCTTCACTGCACAGG 1561 CACAGCATCAACATGGTCAAGACGCAGCAACCTTCGTCGCTGCCACAGCTACTACACCCA 1621 CGCAGCTGCATGACCCACTCACGTGGCTTGCAGACACGGGTGCTTCACACCACCTCACCT 1681 TCGTCAAGGACGCCTTCGTGGAGCTGACACCGCACCTGCAACAGCACCATCCACGCCACA 1741 TCACTGCGTTTGGCGGCACACGTGTGCCCGTGCGCGGTGTTGGCTCTGTGCTGTTGCATG 1801 CACGCACGACGAGCGGAGCTACGATGCAGATTGTGCTACAGGAGTGCCTCTACGTGCCCG 1861 AGGGCCAGGCCAACCTCATCGCCCTCGGTCGTCTGACCAGGGACAGCAGCGGCAGGCCAA 1921 CGGGCCACTCGCAGCGTGATGGCGCTGATGGGCACTACGTGCGCTTCAGCCACGGAGCCG 1981 AGGTCAAGCTGAAGGAGCGCAACAGCCTCCGGTGCTGGCCCATTGTTGCTGTTGGTCCAT 2041 CCACGGCACACGGTCTCACCGCCGATGCCTGCAAGCAACCACAGCAACCCGCAGCAGCTC 2101 CTGCAGCCCAGAGCAAGGTGCAGACACCATCGATGCATGAGGTGCTTGGCCACCGCAACG 2161 ACAACGACGTGCAGCAGTACTGCAAGCTGATGGGCATCGACGATCGCAACGCCATCAGCA 2221 GCAAGCAGTGTACAACGTGCGCAGTGACCAAGAGCACTCGTCACAGCGTCAGCAAGCACG 2281 CGGAGCGCACACAGGTGCCCGGCGAGCGCATCCACGCCGACATCGTCGACTGGACCGCGG 2341 ACTCACCCACGGGCAAGCGCTACAGCCTCGTCATCGTCGATGAGGGCAGCAAGCTCCTGC 2401 ATGCAGTCCATCTCAACGCCAAGAAGGACGCAGTTGCCGCGTTCCAGTCTTTCCTGCGCG 2461 AGACCAAGCTCCCCATCTCGCCCACAACAACAGCACTCCAGACGGATTCCGATGCCATCT 2521 TCCTCGGAGCTGACTTCCAGGCCATCGTCAAGAAGCACCTGAAGCAGCACCAGCAGTCCC 2581 CGCCGTACACCCAGGCGCAGAACGGCATCGTCGAGCGACAGGTGCGCACCCTCTCCGACA 2641 TGGTGCGAGCCATGATCACGGGTGCAGGCCTCGACGCATCGTACTGGAGCCTCGCCTGCA 2701 ACCACGCCCTCCACATCCTCAACAACATGCCTCGCCCTTCCCTCCACGGCAAGACACCGC 2761 TGCAGATTGTCACGGGCTCGCTGCCCAAGCACGTGCCGCAGCTGCACGTCTTCGGGCAGC 2821 CGGCCGTCGTCCACATCAGCACACAGCGCGGACGCCTGCAGCCCAAGGGTCGTCGAGGCA 2881 TCTACGTCGGCCACAACAGCAGCAGCAACAGCCACCTCGTCTACTTTGCAGACACAAACA 2941 CTGTTGTGTCCTCCATCCACGTCCGCTTCCTTCCCTTCTCCAAGGCCGATGATGTCGTGG 3001 ATGAGGGGGAGGAGCAAGTGCAGACATCCACGACATCGTCCATGCTCCAGCTTCCCAGTG 3061 CACGTGACAGCAGCAACAGCACCACTGACGGTGAGCCACCAACGGTTCACATCGACGAGG 3121 ACCAGGACGAGGATGTCGAGACAGACTTCCTGCTCACGGACTTTGACGACGACAGCAGCA 3181 GCGACACCAACGACGCCAACTACGACCCCGACACAACAGATGCAAGCGACACCGAGGCAG 3241 GCGCGTTCACAGCAAGCAGCAGTGGCGACACCAGCCTCACGGAGCCTGCAAGCATCAAGC 3301 AGGCACTCAAGAGCCAGCAACGCAAGCAGTGGACTCAGGCATGCTTGGAGGAGATCGGGG 3361 CCATGGAGCGCAACGGCGTCATCAAGCTCATCCCACGCAGCGCCGTGCCACGGCAGCACA 3421 CGCCTCTCAAGTCACGCTTCGTCTTCAAGGTGAAGCGTGATGCGGAAGGCACGCCGACGC 3481 GCTTCAAGGCACGCTGGGTCGCCAAGGGCTTCAGCCAGCGACCGGGCATCGACTTCGACC 3541 AGACCTACGCCCCAACACCAGCAGCCAAGACCATCCTCACTGTGCTCGCCGTCTCCCTGC 3601 AACGACAGCACCAGCTGCACCAGCTCGACTTCAAGTCGGCTTACCTGCAGGCTGATCTCA 3661 AGGAGGAGCTGTACATGGAGCTGCCGCCGCACTTCACCGACATCGGCGACGGCGCTCAAC 3721 GCTACGCGGGCAAGGTGTGCCGGCTGCTCAAGCCGCTCTACGGCCTCAAGCAAGCTGGCC 3781 GTGCATGGGCCAAGAAGCTGCACACCTTCCTCAAGACCAACGGATGGGCGCAGAGCAACG 3841 TCGACGCTTGCCTCTTCACCAAGCTCCACGACGACGGACAGCGCACATGGATCATCACGT 3901 ACGTCGACGACCTCATCATCAGCGGCAGCAGCGAGCGCCACATCCGTGCCTGCAAGCAGC 3961 AGATCAAGGAGAGCTTCGAGGCAGAGGACCTGGGCCCGCTCACCTGGTACCTGGGCCTTC 4021 ACCTGACGTCACCAGCTGACGGGGTGTTGCACATTGCGCAGACACAGGCCATCAACGACA 4081 TCGTCAACGACTACAACCTGGCAGCGGCAGCCAGCGTGTCCACGCCCATGCGTGTTGGCA 4141 TCGACGCCTCCAGCATCAGCGAGCAGCCCGACCGACGCCTGCCTTTCCGCAACCTCGTGG 4201 GCTCGCTCCTGTACCTGGCCAACCGCACGAGACCAGACGTCAGCTTCGCGTGCGGACTGC 4261 TCTGCCGTTACATGGACCGTTACACGACGGTCCACTGGCAGGCAGCCAAGCACGTCGTGC 4321 GGTACCTGAAGGCGACGAGCGAGCACGGCCTCCTCTTCAAGCGACGCAGCGGCACGCGCA 4381 AGGACCAGCCGCTGGACCTGGTGTGCTACAGCGATGCCAGCTTCGGCACAGACCAGCTGA 4441 CGGGCCGCTCCACGACGGGCTTCACCTGCTACATCAACGGCTGTCTTGTGTCTTGGAGCA 4501 GTCGGCTGCAACCCACGGTTGCGCTGAGCACCGCTGAGGCCGAGTACATGGCCATCTCCG 4561 CTGCAGCGCAGGATGTCGTCTTCCTGCGGCAGCTGCTCATGGACCTCGACGAGCCCGAGG 4621 CTGGAGCCACCAAGATGCTGACAGATAACCAGGCGGCCATCGCCATCGGCAACGACCACG 4681 TCACCAAGCCGCGCACGAAGCACATCCGGGTACGCCACCACTTCGTGCGGGAGCTCATCG 4741 CCGACGGAACCATTGTGCTGCAGCACTGTCCCGGCACGCAGATGGTTGCCGACGCGCTGA 4801 CCAAGGCACTGGACAAGCAGACCTTCGAGCAGCACCTGCCACGACTGGTGGGAACCTCGA 4861 CGGCTGAGACGGAGCAGAGGAAGGCAGTTGAGGGGGAGTGTTGAGAGTCAGTGAGTTTCT 4921 GTTTTGTGTTGAGTCCTTCCTAATTTGCCTTCTCATGTGGTTTTGTCTTGTTTGCCAACA 4981 ACACCTGCTTTGTGGTTTTTCCGTTGACAAACATTCCTTTCTCTCTGCTGGCATGTGTGC 5041 CAACTGCCTCTCCTCTCCTCCTCCTTCTGCACACGTGAGTTGTGTGTCATGTGTGCCATG 5101 TGTGTGTGCATGCCCGTCATGCTTGGCAAATGCCATGTGTGCGTGCCATGCAGTGTTGTG 5161 AAGTGTTGTCTGTTGTGTATGCTTGCCTGCAAGCATTCATGCCATGCTTAGCATTGCTCT 5221 GCGCGCATGTATGCATGCTGCTCATTGTTTAGATTGTTTGTGTTCGCGCACACGCTGCCC 5281 ATGTCGCCTTGGCAGCGTCATTGACTGTGTGTGCACTTGTCTAGTGTTTGTTTGAGCGTG 5341 CTGCCCGAGTTGATTTGGCAGCAGCTTGCTGTGCTTGTTCATTCTCCTTGTGTTCTTGTT 5401 TGTTGCGTTTGCCTACAGTAAACACACACACACCACCTGTCGTGTCTCAACA Features 1-554 5' long terminal repeat 555-677 5' UTR 678-4901 Hypothetical Gag-Pol coding sequence 4899-5452 3' long terminal repeat Conceptual Protein Sequence >Hypothetical Gag-Pol 1 MSDPSDHVVSTPGFKMDLPKFSGSPGTFHAWSIRMKMALKLRGDDVWAAVEAGASSSGGP 61 SSATRSSARRPTAGDHANLTAANLIASTLSGYPLLLFTNGEADVNAGQGWARLKDHYASQ 121 DRLRIAELKEAQLHVPCGNLARFFERHMELQQQLQDAGVRQDNEDLFTIVWKQLPRWTAP 181 LTLPYFASGRFPSLLELSIRLQQLEQQMRGSRTQPQAGGFMASAPPRRGGRRGFSNNSNN 241 HGRQGRNNGNSNGNSNGKGRRFRGNCHYCGKYGHRAAECRKKQRDNGATGFTAQAQHQHG 301 QDAATFVAATATTPTQLHDPLTWLADTGASHHLTFVKDAFVELTPHLQQHHPRHITAFGG 361 TRVPVRGVGSVLLHARTTSGATMQIVLQECLYVPEGQANLIALGRLTRDSSGRPTGHSQR 421 DGADGHYVRFSHGAEVKLKERNSLRCWPIVAVGPSTAHGLTADACKQPQQPAAAPAAQSK 481 VQTPSMHEVLGHRNDNDVQQYCKLMGIDDRNAISSKQCTTCAVTKSTRHSVSKHAERTQV 541 PGERIHADIVDWTADSPTGKRYSLVIVDEGSKLLHAVHLNAKKDAVAAFQSFLRETKLPI 601 SPTTTALQTDSDAIFLGADFQAIVKKHLKQHQQSPPYTQAQNGIVERQVRTLSDMVRAMI 661 TGAGLDASYWSLACNHALHILNNMPRPSLHGKTPLQIVTGSLPKHVPQLHVFGQPAVVHI 721 STQRGRLQPKGRRGIYVGHNSSSNSHLVYFADTNTVVSSIHVRFLPFSKADDVVDEGEEQ 781 VQTSTTSSMLQLPSARDSSNSTTDGEPPTVHIDEDQDEDVETDFLLTDFDDDSSSDTNDA 841 NYDPDTTDASDTEAGAFTASSSGDTSLTEPASIKQALKSQQRKQWTQACLEEIGAMERNG 901 VIKLIPRSAVPRQHTPLKSRFVFKVKRDAEGTPTRFKARWVAKGFSQRPGIDFDQTYAPT 961 PAAKTILTVLAVSLQRQHQLHQLDFKSAYLQADLKEELYMELPPHFTDIGDGAQRYAGKV 1021 CRLLKPLYGLKQAGRAWAKKLHTFLKTNGWAQSNVDACLFTKLHDDGQRTWIITYVDDLI 1081 ISGSSERHIRACKQQIKESFEAEDLGPLTWYLGLHLTSPADGVLHIAQTQAINDIVNDYN 1141 LAAAASVSTPMRVGIDASSISEQPDRRLPFRNLVGSLLYLANRTRPDVSFACGLLCRYMD 1201 RYTTVHWQAAKHVVRYLKATSEHGLLFKRRSGTRKDQPLDLVCYSDASFGTDQLTGRSTT 1261 GFTCYINGCLVSWSSRLQPTVALSTAEAEYMAISAAAQDVVFLRQLLMDLDEPEAGATKM 1321 LTDNQAAIAIGNDHVTKPRTKHIRVRHHFVRELIADGTIVLQHCPGTQMVADALTKALDK 1381 QTFEQHLPRLVGTSTAETEQRKAVEGEC >Salpingoeca rosetta pseudovirus-3 (Srospv3) [RepBase Type:LTR/Gypsy; Repbase Reference Repeat:Copia3_XT] 1 TGTTGGCAGGCAAGTCCTGTCTGCTGAGTCATCATTGACCTCCCTTCTTCACGACACCAC 61 AAATTCACATTCACCTCTCTTGTGTTCTGGAATGTTCACGTGATTTCCCTCCAACCTGTT 121 GCACGTGCAGTGTTTAGCTTGTGTGGTTGCTCGATGTTACATGCTCTTGCATAACACACC 181 ACATAACCACACAACTCTCAACAAACACTGCCACGTCACCACTTTGCGTTGTCGACAATT 241 CTTGTCTTCTGCTCTGTTTCTTTCTGTTGGAGTGTTCATTCATCCTACATCCTTGTTTGC 301 TTCACAACTCAAGTAAACACACACAACTTCCTCTTGCCAAGACAATCTCCCACACAACAC 361 ACAGCACACTCTGCACACACAGCACACACACACACACACACACACAAGTCTCCAACAACA 421 GCACCACCACCATGAACTTACAACAGATTATGAGACCCAGCTCAATTAGCGCAGACGGCA 481 TCAAGGTCTTCGCTGGCGCTGAGCAGGATGCCAACCTCTTCTTCATCACCGTCGAGGCCA 541 AGCTCATCGCCGCTGGCATCGACGCTGGCATCATCGCCGAGGGTGGTGCTGACCACCAAG 601 GAGACGGGCAGGCTCCAGCAGCTGCCTCATCGCCGAGCCCAAGCACCCACGGTGCTTCGG 661 GTCCCCGCACTCGCTCCCGCGCTCAACGCGGCCCTCGCCGCACTGGCGTCCGCCACGACG 721 CGGGGGAACACGACGACGATGACGACGACGAGGGCGATGGCGACGACCACGGCGCTCAAC 781 CATCTTCCTCCTCTTCCTCTCTCCCTTCTTCCGCCACTCCGAGCGGAGGAGCGCAGGTGG 841 CGTCCCGAGCCTCTGGCCTGCTGGATCCCCGTGATCCACAGGTTGACGCAGCCATCTTCG 901 CGTTCCTCCTTGGCGTCCTGACGGGACACCCGCTGCGGCTGGCCATCACCGACAACCGTG 961 GCCGCTCAGGTGTGCTTGCGCTGCGCCGCCTCCGCGAGCGCTACATCCGCAGCGGCAAGG 1021 ACCACGTCAGTCGTCTCAGGCAGCAGCTCTCCTCGACCACCTGGTTGCCCACGGACACCG 1081 TCGACACGTTCATGTCCCGCATCACGGACATCAACTCGCAGCTCCTCGCTGCCGGCGTGT 1141 CCATCCCGGAGGACGACCTGCGCACCCTCGTCCGCAACGAACTCCCCGCAGAGTTTGATG 1201 TGGCGATGCGGTTCATGGAGCGCGAGGACCCGCCGCCATCGCTGTCCAAGATGACGGCGG 1261 ACCTCATCCAGGAAGAGCGCCGCCTGCATCGTCCCAAGAAGCGCACGCCTGTGCTCGCCA 1321 TCGGTGGGCCAGGCCCCGGCTCCTTCGCTGCATCGCCGATGCACGCTGGCACGTCGCCCT 1381 CCGACACGAGCGGTGGACCATGCTGTCCACCTGCAGAGCGCGTGACTTGCGCGTTCTGCA 1441 ACTTCCGCGGCCACTGCGCGCAGCAGTGCCGCAAGCTGCAGGCGGCCAAGCGCTACCACG 1501 TCATCGACGTGCGGCAGATCCTGGCTACGCTTCGCAACCACGGCAACGGCAACGGCAAGC 1561 GGCCAGGATCCTCTCGCCCGCAGCACGGACGAGCAGCTCCATTCAAGAAGGCGGCCGTCG 1621 TCAGCCACGGCCCTCAGCGCGTGGAGACCTTCGCCATCCACCACGATGCCCTCATGCTGC 1681 AGCCCGAGGGCGAGGAGGGCCACGCCATCGGACCAGTGCCACCACAGCTGTGGCTCGCTG 1741 ACAGCGGTGCCACGGCGCACATCACCAGCGACGCCTCCCTCCTCACCAACTACATCGCCG 1801 TCACGCAGCACGTCACCGTTGCCAACAGCCAGGCCGTCACGGCCATTGGCAAGGGCGACG 1861 CCGTGCTCCGCGTGACTGGCACAGACGGCGCTCCAGGTACCATCACGCTCAAGAACGTGC 1921 TGCATGTCCCCGATATCAAGTACAACCTTCTGGCGCTGAACCTGGTGACTCGCGCGCGTC 1981 GTGGTGCTTCCGTCGTCATTGCTGCGGACGACAGCCGCATCCAGTTTGCCACATGGAGCG 2041 TGCCTCTGCTGCCGTCCAAGGACACCGGCCATCTCTTCCTCTACGCCAGCACCACGACCT 2101 CCCAACAAGCCACGGCGCTTGCGGGGGAGCTCGTGCACAGCAGCGACGGGGAAGCCGAGG 2161 ATGCTGACGAGGGCGCCTCTGCACACGACGTGCTAGGCCATCGCAGCAGCGCGGCCGTTG 2221 ACGCCATCCGGCAGCAGATCGCCCAGGCCTCTTCCAAGCACATCGTCACCTGTGGACCAT 2281 GTGCGCTTGGCAAGAGCACGCGCGCCTCCATCCCAAAGCAGTCTGCTCCACGTAGCGCTG 2341 GGCCATGCCAGCTGCTCTACGCCGACATCGCCGGTCCGCTGGAGGAGACGTCGCTGCGAG 2401 GTGCACGCTACGCGCTGACCTTCATCGACGACTGCACGCGTTTCGCCTGGACGTTTCTCA 2461 TCCGGCACAAGAACGACGTCGGTGCGGCCCTGGAGCAGCTGCGCAAGGACCGCCACGTCG 2521 TCAACGCGCTCCGAGGCGCCACGCTGCAGACGGACAGCGACGCCGTCTTCAAGAGCCAGG 2581 ACTTCACCGACCTGTGCCTGGCCTTCGACATCAAGCAGCGCTTCTCGCCACCGCACTCGC 2641 AGGCCAAGAACGGATCCGCAGAGCGCACCTTCCGCACCCTCTTCGAGACGGCGCGCACGA 2701 TGCTGTTTGCTGCGGACCTGGACAAGCCGTTCTGGGGCTTCGCCGTGCAGCACGCCACGC 2761 TGCTGCACAACATCGCGCCACGCAGGAGCCTCAAGGACAAGTCACCGTTCGAGGCCCTGA 2821 CTGGGCACGCCTTCGACGTCAGCCTGCTGCGCGTCTTCGGCTCGCCGGCCTACGTGCATG 2881 TGGAGAAGAGCAGCACGCGGCACAAGCTTGACCCACGCTCACGCGTTGGCGTCTACGTCG 2941 GCTTCGCCGAGGAGGACCAGGCCCACGTCGTCTGGATGCCGGACACGCGACGCGTTGTCC 3001 ACACCATCCACGCTCGCTTCGGCGCCATCAAGAACAAGGACGTCGCCTCCTCTCAGCAGC 3061 AGCAAGAGCAGGACGACAGCGGTGCCTCTGCTTCGCATGCCAACAAGACCGCTCAGCGTT 3121 CAACCGAGGACAGTGCCACCGGCGCTCCCACTGCACCACGTGCGGGGGAGCCGCAGCTCC 3181 AGCCACGCGCCCTTGGCGGCTCCGTCTGGGACCAGCTGCTGGTGTCCGAGACCCTCGGCG 3241 ACAAGGACACCTCTGGTGGCTCAACCACCACGTGTCACGTTGCCACCAGCGCTGCTGGTA 3301 CGGGGGAGAAGACATCAGCAGTGGGTGGTCATCTACCAGACATCGCTGCTGGCAGTTTTG 3361 CCACGTCAGCTGAGCCAGCCACCGTCAAGGAGGCGCTTGCCTCGCCAGACTCTGAGGAGT 3421 GGCGCCAAGCCATCCTGGACGAGTTTGCGGCAATGCAGGCCAATGACGTTTACGACGTCG 3481 TGCCTCGCGCTGACCTTCCCAAGGGCCACAAGCTGCTCCGCAGCATGGTCATCTTTCGGA 3541 AGAAGCGTGACGACCAGGGCAAGGTGATCAAGTACAAGGCGCGCTGGGTTGCCAAAGGCT 3601 ACTCCCAGGTCCACGGTGTCAACTACACGGACACCTTTGCCCCGACGGCTACCATCGCAG 3661 CCATCCGCACCATGCTCGCCATGGCCGTCGCGCGTGGCATGGACATCCAGCAGATGGACG 3721 TCAACACGGCGTTCCTCAACGCGCCCGTGGATCACGAGATCTACGTCCAGCCACCGGCCG 3781 TCGACGGCATCTTCTCGCCGAATACGGTCCTGCGCCTCAAGCGCGGGTTGTATGGCCTGA 3841 AGCAGAGCCCGCGCCTGTGGAACCACACGCTGGACGCCTGGATGCGCGAGCAGGACTTCA 3901 TCGCCACAGCCACGGACGCCTGCATCTACCGCCGCACCTGCAAGGGTGGCAAGGTGATGT 3961 GGGTTGCCGTCTACGTGGACGACCTGCTCATCTTCGCCGACAGCGACAGCGACATGGCCG 4021 CGTTCAAGAAGGCCATCTCCAAGCGCTTCAAGATGAAGGACCTGGGCAGCCCAGACATTT 4081 GTCTCGGCATCAAGGTGCAGCACGACCGCAAGGCCAGGACCGTCACCATGAGCCAGGAGC 4141 ACTACCTGCGCAGCGTGCTGGAGACCTTCGGCATGGCTGACTGCAAGCCGGTCGGCACGC 4201 CGCTCTGCACGGGCTACGTCGACAAGCCAGCCGACAAGGAGGAGCCACTCCCGGATGTGC 4261 CGTTCCGCGAGCTGCTTGGCTCCCTCCTCTATGCTGCGACGATGACGCGCCCAGACATCT 4321 CGGCGGCTGTCTCCATCCTCTCTCGCCGTATGCAGCACTTCGGCATGGACCATTGGAAGG 4381 CTGCCAAGCACCTTCTTCGCTACATCAAGGGCACCTTGTCCTACACCATCAAGTACGCCG 4441 CCACTGGCGACACCAGCAACGGCAGCACTGCCGACGGCGTGCTCTCAGCGTACTCGGATG 4501 CGTCGTTCGCCTCCGACGTTGACACGCGACGTTCCCGCACGGGCTTCGTCGTCTTCTGTT 4561 CCACGGGCCCCGTGTCCTGGAACTCCAAGCTGCAGGCCACCGTGGCCACAGCCTCCGCCG 4621 ACGCGGAGTACATGGCTCTCGCAGCCACCGCACAGGAACTCATGTTCCTTCGCCAACTCC 4681 AGGAGGAGCTCACCGGCGCTGTCCTGTGCGAGCCCACGCTCATCCACACGGACAACCAGC 4741 CGGCGCAGCGCGTTGCCGAACACGCCGCCTCGCGCATGCGGCACATCCTCGTCAAGTACC 4801 ACTACATCCGCGAGTGCGTCGACACCAAGAGGATTGTGCTGAGCTACCTCGCCACGGAGC 4861 ACATGATCGCAGATCTCCTCACGAAGATCCTCCCTCGGCCCAAGACGGCTCAGTTCTGCA 4921 CGATGCTGTTCGACCAGCGTCCTCTGCCAGGCTACCAGCCACGGGCCCGTCCTCATTCGG 4981 GCCGGTCGCCACGTCCTTCGACTCCGCGTCAGGACCTCTGAGCGGCCGCGCACCACAGGA 5041 CACGCCTTCACTCGGGCCAGCCTTCCACAACAGGCTGCGCACCACAGGCACCAACCATTT 5101 TCTTAAACGTGTTCCACAACACACGTCCTTACTCACATCTCACCTACATCTGCCCATGCC 5161 ATTCCTACATGCATGACATCATCCACATGCTCATCACGTTTCAGAACATCAACGCAGCAG 5221 AGAGGTAGGTCAATGCGGGGGAGTGTTGACAGGCAAGTCCTGTCTGCTGAGTCATCATTG 5281 ACCTCCCTTCTTCACGACACCACAAATTCACATTCACCTCTCTTGTGTTCTGGAATGTTC 5341 ACGTGATTTCCCTCCAACCTGTTGCACGTGCAGTGTTTAGCTTGTGTGGTTGCTCGATGT 5401 TACATGCTCTTGCATAACACACCACATAACCACACAACTCTCAACAAACACTGCCACGTC 5461 ACCACTTTGCGTTGTCGACAATTCTTGTCTTCTGCTCTGTTTCTTTCTGTTGGAGTGTTC 5521 ATTCATCCTACATCCTTGTTTGCTTCACAACTCAAGTAAACACACACAACTTCCTCTTGC 5581 CAAGACAATCTCCCACACAACACACAGCACACTCTGCACACACAGCACACACACACACAC 5641 AAGTCTCCAACAACAGCACCACCACCATGAACTTACAACA Features 1-445 5' long terminal repeat 432-5018 Hypothetical Gag-Pol coding sequence 5019-5243 3' untranslated region 5244-5681 3' long terminal repeat Conceptual Protein Sequences >Hypothetical Gag-Pol 1 MNLQQIMRPSSISADGIKVFAGAEQDANLFFITVEAKLIAAGIDAGIIAEGGADHQGDGQ 61 APAAASSPSPSTHGASGPRTRSRAQRGPRRTGVRHDAGEHDDDDDDEGDGDDHGAQPSSS 121 SSSLPSSATPSGGAQVASRASGLLDPRDPQVDAAIFAFLLGVLTGHPLRLAITDNRGRSG 181 VLALRRLRERYIRSGKDHVSRLRQQLSSTTWLPTDTVDTFMSRITDINSQLLAAGVSIPE 241 DDLRTLVRNELPAEFDVAMRFMEREDPPPSLSKMTADLIQEERRLHRPKKRTPVLAIGGP 301 GPGSFAASPMHAGTSPSDTSGGPCCPPAERVTCAFCNFRGHCAQQCRKLQAAKRYHVIDV 361 RQILATLRNHGNGNGKRPGSSRPQHGRAAPFKKAAVVSHGPQRVETFAIHHDALMLQPEG 421 EEGHAIGPVPPQLWLADSGATAHITSDASLLTNYIAVTQHVTVANSQAVTAIGKGDAVLR 481 VTGTDGAPGTITLKNVLHVPDIKYNLLALNLVTRARRGASVVIAADDSRIQFATWSVPLL 541 PSKDTGHLFLYASTTTSQQATALAGELVHSSDGEAEDADEGASAHDVLGHRSSAAVDAIR 601 QQIAQASSKHIVTCGPCALGKSTRASIPKQSAPRSAGPCQLLYADIAGPLEETSLRGARY 661 ALTFIDDCTRFAWTFLIRHKNDVGAALEQLRKDRHVVNALRGATLQTDSDAVFKSQDFTD 721 LCLAFDIKQRFSPPHSQAKNGSAERTFRTLFETARTMLFAADLDKPFWGFAVQHATLLHN 781 IAPRRSLKDKSPFEALTGHAFDVSLLRVFGSPAYVHVEKSSTRHKLDPRSRVGVYVGFAE 841 EDQAHVVWMPDTRRVVHTIHARFGAIKNKDVASSQQQQEQDDSGASASHANKTAQRSTED 901 SATGAPTAPRAGEPQLQPRALGGSVWDQLLVSETLGDKDTSGGSTTTCHVATSAAGTGEK 961 TSAVGGHLPDIAAGSFATSAEPATVKEALASPDSEEWRQAILDEFAAMQANDVYDVVPRA 1021 DLPKGHKLLRSMVIFRKKRDDQGKVIKYKARWVAKGYSQVHGVNYTDTFAPTATIAAIRT 1081 MLAMAVARGMDIQQMDVNTAFLNAPVDHEIYVQPPAVDGIFSPNTVLRLKRGLYGLKQSP 1141 RLWNHTLDAWMREQDFIATATDACIYRRTCKGGKVMWVAVYVDDLLIFADSDSDMAAFKK 1201 AISKRFKMKDLGSPDICLGIKVQHDRKARTVTMSQEHYLRSVLETFGMADCKPVGTPLCT 1261 GYVDKPADKEEPLPDVPFRELLGSLLYAATMTRPDISAAVSILSRRMQHFGMDHWKAAKH 1321 LLRYIKGTLSYTIKYAATGDTSNGSTADGVLSAYSDASFASDVDTRRSRTGFVVFCSTGP 1381 VSWNSKLQATVATASADAEYMALAATAQELMFLRQLQEELTGAVLCEPTLIHTDNQPAQR 1441 VAEHAASRMRHILVKYHYIRECVDTKRIVLSYLATEHMIADLLTKILPRPKTAQFCTMLF 1501 DQRPLPGYQPRARPHSGRSPRPSTPRQDL >Salpingoeca rosetta pseudovirus-4 (Srospv4) [RepBase Type:LTR/Gypsy; Repbase Reference Repeat:Copia1_AG] 1 TGTTAGAGAGTTGGGAGAACTCACTAAGATCTATGGTGTTCTGTGAGAAGCCCAGCAGGA 61 ACAAAAGGAATTGTCTCATCACGAGACTTACGAGCCTACACGTCAAGTGACCAGAATGGT 121 TTGGTTCACTCATGGTCATACACGTCGGAGACCAAGTGAATGTGTGATTTACCCTGCCAT 181 GAGCGAACTGATACTGTGTTGCGTATTCATTCTTCCAACCAGTGTATTCCCTACCACAAC 241 TCGTACGGCAATAGCTTTCTGCCCCAACCAATACAAACCATCGACTACAGCGATCACGAT 301 CATTGTCACACACATACCTATACTGTGAGGAGGGACACACTGCATATTTCACGTTGACAG 361 ATTATGAGACCCAACAACAACAGCAGCACAAAGACCTCAACAGCTCTGATCCTGAAGTGA 421 GTGGGTTGGAAGAAACAAGGACAGTCCCAAAAGAAAACACACACACGCACACCACCAAGA 481 TGGCACACCGAGAGGAGGGTCGGCATATGATCCCAGTACTTGACGGAAACAAGGTCTCGT 541 ACAGCTGGTGGAGCATGAGGATGAGACACTTCTTGAAGAGAAAGAAGGTCTGGGGTGTGG 601 TGGATCCCGACTCGGAGGAGACGGATGAGGTGAAGAACTCAGATGCCTACCTGTGGATCA 661 CAGAGTATCTCACCGGGTTCCCAATGAAATTGGTGCACAAGCTCAAAGGGGATGAGGACG 721 AGAACGCAAGAGCAGCGTGGAAGACACTGGCAAAGATGTACGAGAGAAAGGACAAGGTGG 781 CAATGGTTGAGGCGAAGATCAAGATGTTCAACAGACAATGGGAGCGAGATGACACTGTGG 841 AATCCTTTGTGAACGACTTCATGGAGACGCACGAGAACATGACGAGAGCAGGTGGAGACA 901 TGAGTGAGGAAGATCTCATCCAGCTCATCATCGTGCGCCTACCAGAGAAGTACAGAGGGG 961 TTAAGACGGTGTTGAGGCTGACCAAAGACCTGACGATCCAAGACATGATGCATGCCCTCA 1021 AGAGCGAAGAAGACATGACGAGCCTGAACGACCAGAGAGCAGGGCATGTGAAAGAGAGAG 1081 TAGCGAAGGTGTATGAGAAACCCAGAAGAGACAGCAAGCCAAAAGGAAGAAAAGAGGAAA 1141 GACGATGCTTCTTCTGCAACAAACCAGGCCATCTGAAGAGAGATTGTCGAGAATGGAAAC 1201 GAGAAAGACAGAAGAAGTTCAAGGGACCACGACAGCACAGTGGCGAGAAGATGTTCAGTC 1261 TGCGAGAAGAAGAAGAGATGCTATGCAGCATTCGGGAAGAGGTTCGCAGCACACGCACGG 1321 ACACGAAAGCAACTCAAGGTGCATGGTTACTGGATTCGGGAGCAAGCCGACACGTCACCA 1381 GCTTCAGAGAAGACCTGACGGACGTGAAAGAAACAGACACAGCAGTGACGGTGGCAGATG 1441 GCCGAACGGTGAAAGCTCTCGGACAAGGAACAGCACACATTCACACCAGCGCAGGTCGGG 1501 TGGTGTTGAGTGATGTGTTGTTGATGCCGGAAGGATTCGAGAGAATCATCAGCCAAAGAA 1561 GAGTGGTGCAAAGAGGACATCAAGTGCGCAGCAACAAAGACGGTGATATGGAGATCAAGT 1621 TCAGCAATGGAAAGAAACTCACTCTCAGTACTATCGGAGGCATGAGCTACTTGATCGATG 1681 ACGAGCACGAAGTGGTGAAAGTCCTCAGCAGCACGTCAAAGACCGCGTTGCAGGAGCTGC 1741 ACGAACTGTTCGCACACAGAGACAGCAAGAAGATACGAGAAAATGTGTGTGACACATGCT 1801 TGAAGAGCAAGATGAAGAGAAAGAGCATGCCACAGCACTCTGGCAGAGACAACCAGCAAT 1861 ACAAGAAGGGGCAGATGTTAGTGGCAGACATTGCAGGCCCCTACCCCACCTCACTCCATG 1921 GAGGCAGATATGCCCTTGTCATGAAGGAGGTGAGGACGGGGTTCGTAATGGTGGGAGTGA 1981 TGGAGAACAAAGGAGAAGCAGCAGAGGTGGCAACGCGTTTGATCCTAGCGGCACCGAGAC 2041 AGCTAGGAGTGGGAAAAGGATCAACGATTAAGACGGATAACGAAAGAGTCTTTACATCCA 2101 CAGCATTTTCACACGCAATGTATGCCCTGAACATCACCACGGCCACCTCAGCACCATACA 2161 CTCCTGAAAGGAATGGCGACGCAGAGCGTACCATACAAACGCTCAACAACATGGCACGTG 2221 CCATGTTGCAGGCGGCATCACTGGGTGAAGAGTTCTGGGCGGCAGCGCTGCGATACGCGG 2281 CGTACCTGAACAACTTCCTGGGGCCGTTCCGCAACATCTTCGGCAGAAACCCTCCAATGA 2341 CGCATTTACAGCAATTTGGTGTAACAGCTTATGTGAGGAACGAAGCCAGAAAGTCGAAGA 2401 TGGCACCAAGGACAACAGAAGCAATCTATGTGGGGTATGATGAACGCTCAAGAAGCCACC 2461 TTCTGTGGGAGCCAGGTAACAGACGCCTCACCCGATCCATCCACGTCAAGTTTTTGACAA 2521 TGGATGAGTCGCGAGTGAGAGCTATCGTGCCTCTCTCCACACCAGCACCTACATTCACAT 2581 CAGCACCTACACCCAAAAGAACCACATCAGCCTTACCTCATGTCAAGAAAGGAGCTAAGA 2641 CAGCACCTAAAGTAGCGACAGCACCCAACGCGGAAGTGGCGACACCGAAAACGAGAGCCA 2701 CGAAGAAAAGGGGACATGGGAAGGCACCAAGGTCGATGAGAAAGGAGACAGCATTGGGTG 2761 AAACATCAGCAGCAGGCAAAACGACAGAATCCTCATCCGCAGCTGGAGAAGAGACAACAA 2821 CATTTGACGCACCAATCACCGACACAACGGTGACACGTACAACAGCACCCTCAACCAGCA 2881 ACGTGATACCTGAGGAACGCAACAGCGTTGAGGGGGAGGGTCGGATGACAGTAACCAGAA 2941 GTATCCCAGCATTCACCGCAGCTCCGCGCCGGTCCGCAAGGATCAAAGAGAGGCAGAAGG 3001 GCGAAGAAGTGAAAGCGGTGAAAGTGAAGAAAGGATGGGAAGAAGCGGTCGCAGAAGAGA 3061 TGAGCAGTCTTGAACGCCATGATGTGTGGGATGAAGCAGTTGAGGGGGAGTATGACGTGA 3121 AGCCATTGAACACGAGGTTTGTGTACGCAACAAAAGGAGATGGGCGCAGAAAGGCACGGT 3181 TGGTGGTGATGGGGAACATGGAACCAGACGGAAACAACGGCAAGAGCAACTACTCACCCA 3241 CAGCATCCAGAACAACAACACTTACTTTCCTGGCCCTCAACAGAGCTCGGGTGGTCCGCC 3301 AGCTGGACATCAAGACAGCATTCCTACACGCACCCATACAGAGCAAGAAGCCGGTGTTGG 3361 TGAGAGGACCGGATGGTAAGGTGTACAGACTCAAGAGGGCGTTGTATGGTCTGAGGAGGA 3421 GCCCGCAAGACTTCAACAAGCACCTACATCAACAACTTCAAGCTCAAGGATGGCGGCGGG 3481 CTACACAGGACATGTGTGTGTACTTACGGGGACGACAACAGCTTCTGGTGTTTGTCGATG 3541 ACCTGTTAGTGGCAGCAGACACAGCAGACATTGCGGACCAGATCGAGAATGAGTTGAGGA 3601 AGAGGATGGAGATCAAGCGTGACAAGGGTGGATGTTTTGTTGGGGTGGAATATAGCCTCC 3661 ACAAAGGCCAGTTGCGAGCGCACGCCAACAGCTACATCGACAGTCTTCACTTGGACAGAG 3721 TGAACACGCACACTCCGCTCACCACAGACCATCGATCCGCAACAGCAACCGGCTTACCTG 3781 AGAAGGAGACGGATGCAGACAGCCGGGATGAGTTCCATGCGATGGTTGGTCGTCTGACTT 3841 ACATAGCATCAACAGCAAGGCCTGATATTGCGTACGCGGTGAGTGTACTGGGCGAGAAGT 3901 GCCAGAGCCCAACAGCACAGGACCAGAAGCAACTACAGCGAACCGCGCAGTACGTGGAAA 3961 CACACAGGCATGAACTACGCACGACAACCACAAGCAACGAGATTCGAGCATTCGCTGACG 4021 CCTCCTACGCATGCGAGCCCGAGTCGAGATCAAGGACAGGGGTTGTGCTTACCATCGGAG 4081 GTCTCCCGGTGTTTTGGTCCTCGAAACGCCAGAAGATGGTATGCCTGTCGACATCAGAAG 4141 CAGAGTATGTGAGTATGACAGAAGCAGCAAAACAGGCAATTTGGGTGAAGAACCTATGCG 4201 CAGAACTCGGACAGGAACAAGAGAGCGTCACCATCTACACCGACTCACAATCAGCTATCG 4261 CACTCGCACAACAACAACAGCTCTCACCAAGGACAAAACACCTCGGTGTGAGGATGTATT 4321 TCCTCCGACAACAAGCAGACGCCGGGAACATCAAACTGGCCTACCTGAAGACGACGCAGC 4381 AGCCCGCGGACCTTCTAACGAAGGCTCTAGGCAAACGACAACACCAACTACTGACATCCA 4441 AGATCATGAAGTGGGTGTAAGAAGAGAGATGAGAGACATCACGGAGAGGTGAGGGACTTC 4501 ACCCAACATCAACCACAACAACGAACACAGCAGTCGATGGTCCACACGAACACCAACAGC 4561 AGTCGAGGCATCGACATGAAACCAGAACGCAAGAATCAGCCACAGCACGAGCACGAGAGA 4621 TTTACCCGAACGAAAGACAAGGAAGAAGCCAAGGCGAAAGAAAATTTACCACGAAAGATT 4681 TCAGCAGAGACAGCCATCCTCGGATACAGCGAGCAGCAACCTCCTTCCATGCAGCCCATG 4741 ACACGAAGACAGGTATGAGCAGAAGACGTGATGCCACAATTCAGGGGGAGTGTTAGAGAG 4801 TTGGGAGAACTCACTAAGATTTATGGTGTTCTGGGAGAAGCCCAGCAGGAACAAAGGAAT 4861 TGTCTCATCACGAGACTTACGAGCCTACACGTCAAGTGACCAGAATGGTTTGGTTCACTC 4921 ATGGTCATACACGTCGGAGACCAAGTGAATGTGTGATTTACCCTGCCATGAGCGAACTGA 4981 TACTGTGTTGCGTATTCATTCTTCCAACCAGTGTATTCCCTACCACAACTCGTACGGCAA 5041 TAGCTTTCTGCCCCAACCAATACAAACCATCGACTACAGCGATCACGATCATTGTCACAC 5101 ACACACCTACAACGTGAGGAGGGACACACTGCATATTTCACGTTGACA Features 1-359 5' long terminal repeat 360-479 5' untranslated region 480-4457 Hypothetical Gag-Pol coding sequence 4458-4792 3' untranslated region 4793-5148 3' long terminal repeat Conceptual Protein Sequences >Hypothetical Gag-Pol 1 MAHREEGRHMIPVLDGNKVSYSWWSMRMRHFLKRKKVWGVVDPDSEETDEVKNSDAYLWI 61 TEYLTGFPMKLVHKLKGDEDENARAAWKTLAKMYERKDKVAMVEAKIKMFNRQWERDDTV 121 ESFVNDFMETHENMTRAGGDMSEEDLIQLIIVRLPEKYRGVKTVLRLTKDLTIQDMMHAL 181 KSEEDMTSLNDQRAGHVKERVAKVYEKPRRDSKPKGRKEERRCFFCNKPGHLKRDCREWK 241 RERQKKFKGPRQHSGEKMFSLREEEEMLCSIREEVRSTRTDTKATQGAWLLDSGASRHVT 301 SFREDLTDVKETDTAVTVADGRTVKALGQGTAHIHTSAGRVVLSDVLLMPEGFERIISQR 361 RVVQRGHQVRSNKDGDMEIKFSNGKKLTLSTIGGMSYLIDDEHEVVKVLSSTSKTALQEL 421 HELFAHRDSKKIRENVCDTCLKSKMKRKSMPQHSGRDNQQYKKGQMLVADIAGPYPTSLH 481 GGRYALVMKEVRTGFVMVGVMENKGEAAEVATRLILAAPRQLGVGKGSTIKTDNERVFTS 541 TAFSHAMYALNITTATSAPYTPERNGDAERTIQTLNNMARAMLQAASLGEEFWAAALRYA 601 AYLNNFLGPFRNIFGRNPPMTHLQQFGVTAYVRNEARKSKMAPRTTEAIYVGYDERSRSH 661 LLWEPGNRRLTRSIHVKFLTMDESRVRAIVPLSTPAPTFTSAPTPKRTTSALPHVKKGAK 721 TAPKVATAPNAEVATPKTRATKKRGHGKAPRSMRKETALGETSAAGKTTESSSAAGEETT 781 TFDAPITDTTVTRTTAPSTSNVIPEERNSVEGEGRMTVTRSIPAFTAAPRRSARIKERQK 841 GEEVKAVKVKKGWEEAVAEEMSSLERHDVWDEAVEGEYDVKPLNTRFVYATKGDGRRKAR 901 LVVMGNMEPDGNNGKSNYSPTASRTTTLTFLALNRARVVRQLDIKTAFLHAPIQSKKPVL 961 VRGPDGKVYRLKRALYGLRRSPQDFNKHLHQQLQAQGWRRATQDMCVYLRGRQQLLVFVD 1021 DLLVAADTADIADQIENELRKRMEIKRDKGGCFVGVEYSLHKGQLRAHANSYIDSLHLDR 1081 VNTHTPLTTDHRSATATGLPEKETDADSRDEFHAMVGRLTYIASTARPDIAYAVSVLGEK 1141 CQSPTAQDQKQLQRTAQYVETHRHELRTTTTSNEIRAFADASYACEPESRSRTGVVLTIG 1201 GLPVFWSSKRQKMVCLSTSEAEYVSMTEAAKQAIWVKNLCAELGQEQESVTIYTDSQSAI 1261 ALAQQQQLSPRTKHLGVRMYFLRQQADAGNIKLAYLKTTQQPADLLTKALGKRQHQLLTS 1321 KIMKWV >Salpingoeca rosetta pseudovirus-5 (Srospv5) [RepBase Type:LTR/Gypsy; Repbase Reference Repeat:Copia-4_AT] 1 TGTCAGCGGAAATTCCCGATGACATGTTTGTGTGTATGAGTGAGTGTGAACGAATGCGTT 61 GTCTTGACGTGTGGGAACACCATGATTTCACCATGGTCTGACTTTGTGAAAGACCCTCTT 121 TGTTTGTCCCTCTATCAGGTGATCTCCTGATACACAATGTGTGAATGTACACGTGTCACT 181 TTAATAGTGTATACGTGTACCCTCTTCCTCTATCATATGCGTGATATGTACTGCATGGTG 241 TTCATTCTCTTCTGTCCCCGATTCCAACGACACCACTGCGTGGGTTGTCTACCAAGGTTT 301 ACTTCAGCTGTGAAAGCTCTCAATACAAGTCTCAGGGAAAACGCTGAGGAACAATCTTGT 361 CAGATTATGAGACCTGGCGGCGACACCAACTGCGAGCAACACGAAGACGCCGAGACAGAA 421 CGACAACATGAATCAGTTCAAGCACCAAGACAACCCCATGGGGAAAGTACCCGTGTTCAA 481 CGGAGTCAACATGCGCTACAGTGTGTGGGCCATGAGAGTCCGAAACTACATGTTGGAGAG 541 AGACTGCTGGCTGGCAGTATCAGAAGGAGACAACGATGAAGAGTACGAGCGGATGATACG 601 GAGCCTCAGTGAAAGCCAGCAAGCCCAGTACAGGCAGATGTATGGAAGGGCCATGGGTAT 661 CATCGGCAACGCAGTAGGCGGAGCACTTACCAAGATCGTGTCAGGGCCGACCATTCGCGG 721 AGACCCACGCAAGGCATGGTTCGCTCTCAAGCAACTGTACGACCGCCGAGACGACGAGGA 781 GATCTCCAGACTCAGTGCAAGCATCTTCGCGAGGACCTGGGGCAAGGACGACAACGTGCA 841 GACAGTCATGGGCGATGTCATCGACGCGTATGACGAAATCACAGCAGCACAAGGAGTACT 901 GAGCGAGTCCATGGTGGTGAATCACGTCCTCAACATCCTCCCAGACAAGTACAGGAACGT 961 AGCGCAGATCATCCGCGTTACCCAGAGACAGCTCGACCTGAGAGAACTCCTGAAGATGCT 1021 TCTATTGGAACAAGCGAGGGCAAGGACGAAGACGCAGTCACAGCATCAACCACTCATCGC 1081 CTACGCACAGAAAGGCGATGCCAGGAAGGATAAGAGACGATGCTGGAACTGCGATAAACC 1141 AGGCCACCTCAGCAAGGACTGCAGATCAAGAAAGAAGAAAACCCCCGGGCACGGACGAAA 1201 ACCACGCAGAGACCAAGACAGGACAAGGCAGTACCGGCATGAGAAGACCTTCAAACTGGC 1261 AGAGACAGCACATGTGACGTCCACAGCAGCGGCAGGAGACAACGGGTGGCTGGTGGACAG 1321 TGGTGCGACAACACACGTCTCATCAGTACGTGACGATTTTCTCACCTTGAGTGAAGAATC 1381 CGTCGACGTAACCCTGGCAGATGGGTCAACGGTTACAGCAACGGGCCGTGGTACAGTGAG 1441 ACTGCAGACCAGCGCAGGGGCAGTGACGATGACAGATGTCCTGTACCTGCCCCGTGGGCA 1501 GGCACGCATTATCAGCATGGGTAAAATCATGGAGAAAGGAAACGACGTTTACAGCAAGGC 1561 AGGGTCGCTGTACATCACCTTTCCCGATCGAACGCAGATACAGCTCCAGAAGAGGGATGA 1621 GCTGTACTTTCTGCCTCAGACGACAACATCAGCGACAACCGCTGCAGCAGTCCAGGAGAA 1681 CACGGCGACATCAGCAACAACGGCCACAGCAATCCATGAGAATATGGGACACAGGGCATG 1741 TGATCCCTGCATCAAGGGAAAGATGCGGAACGCCAACAGCAAGAAGTTCTCCGGCAACAG 1801 CAACAACAGCTACAAGCCAGGTGAAATGCTGTGTGCAGACCTGACAGGACCACACCCTCC 1861 TACGCTTACCGGCGGCAGATTTGCGGTCGTGCTCCTTGACGTCGCAACCCAGTACAGCAG 1921 CGTCGGACTCATGGCAACGAAGAAGGACCTGGCCAACACCTTGGACAGCATGCTGATGAC 1981 ATTGCCCCGGGCAATGGGCATAGGACACAGAGTGAACACACTGAAGACGGACAACGAGCC 2041 ACTTTTCTCGACACCTGCTATGCTGAAAGTGCTACACAAGCACAAACTCGACATGCGGCA 2101 TTCTCCCCCGTACCGACCAGAGAAGAACGGAGACGTCGAACGGCACATCCAGACTCTCAC 2161 GTCCACAGCACGCACCCTGCTGATCGACGCGCGCCTTCCGACCGAGTTTTGGGGCTGTGC 2221 CCTTCTGCACGCGTCCCATGTGCACAATCACCTGAAGCCACTCCAGCGGCTGAAACTACA 2281 TCCAGTGgTGCAAGACATGAAGCAGTTCGGCGTCACGGCGTACGTCAGAGATCGCAACGG 2341 TGACAAATGGAGGCCAAGAACATGGACCGGCATCTACGTCGGGTTCAACCCACAGTGCAG 2401 GGCACACAAGATCTACAACCCCGAGTCACACAACGTCATCAGCACTTACGACGTTCGCTT 2461 CCTGACAATGGAAGAATCCTGGTTAAGGCCCGTTCTTCACCAGAGGGAAGACTTTTTGCC 2521 TCCCTCTCTGGACCTGGCACAAAGGCCGTTACCATCAACCACAACAACGACCACGCATGA 2581 GCCAGTGATGACGCAGCAACAACAGACGCATGAGCCAGTGATGACGCAGCAACAACGGAT 2641 GCATCAGCCAGTGCAGATACAACGACAACCTCAACGAGAGAAGCAGAAGCAGGCTCGTCG 2701 GGTGAGGAAGCAACCACAACAGCAAACAACGCACCGAAAGCAGACGTCACCAGTCCAGTC 2761 GCTGCCACCGCAGCAGACGACACCAGTCCAGGCGCTGCCACCGCAGCAGACGACACCAGT 2821 CCAGTCGCTGCCACCACAGCAGACGTCAGTCCAGACTCTGCCAACGCAGCACAAACAGGC 2881 GTCAGAACCACCACAGCAGCTGACACAAACGACGCAGCCACCACAGCAGGTGCAGCACAT 2941 GACGCAGCCACCACAGCAGGTGCAGCACATGACGCCAACAACGTCCGACCAAGGGCCGCG 3001 CAGGTCCGCACGAATTCGCGCGCAGCAGCAGAAGACGACTGCAGCCAAAGCAACAGCAGC 3061 TCAGGCGCGCGCGGGGTTCGAAGAGGCGGAGAGAAGTGAGATGGACAGCCTGAGAAGACA 3121 TGGCGTCCTAGAACGTGTTGAGGAGAAGGGGTATGTTAGCACTCCTGTGCTACCGACGAT 3181 GTTCGTCTATTCTACAAAATCCGATGGAAAGAGGAAGGCACGTCTAGTGGTCAGGGGAGA 3241 CCTGGATCAGCACGACACCAGCACTTACTCCCCAACAGCAAGCAGATCAACGTTGCTTAC 3301 CTTGATGGCGTCAACCACAGCTCCACTGATGGTGATGGACGTGACCACTGCGTTCCTTCA 3361 CGCCGACCTGCCAAGAGATGTGCATGTGAAGATCAGAGGAGAGGTTTTCAGGTTGCACAA 3421 GGCCCTCTACGGCCTCAAGGACAGCCCACGTCTGTTCCACCAGCACATCCACTCCATCCT 3481 CACACGACTCAGCTGGCAAGCCACCATCACCGACCCTTGTCTCTACACCCGTCAACATCA 3541 GCAGCACGGACAAACGTACCTCATGGTGTATGTCGACGATCTTCTCTACGTGGGGGGTGG 3601 ACAAAAAGAAGTCGTCGAGGAACTACGTCCACACCTGCAGATTAAACACAAGCAAGGACA 3661 GCAGCATGACTACCTTGGCATTCGCATTACGCGCACAACAACATCAGCAGCAACCACGAC 3721 TTCAACCACAACCACCATTTCTCTTACGCCGTATCTATCAGCCATCGCCGGTATCGGGCC 3781 TTTCCGGGTGTCGACACCGATCACGATCGACCACGGCAGGCAGATACAGGGGGGTGGGAA 3841 AGAAGGAGCGATGGTGAGCGGTGGTGGACGCGCGGACAACAAGGAGCAGACACGTCAGCA 3901 ACAGCTACCGCTGACCCAGCAGAAACAGCACAAGCACAGACTCAAGGAGTACCAGCAGGT 3961 GCTCGGCACGTTGACATACGCCGCCTCGACAGCACGCCCTGATCTAGCATACGCAGCGTC 4021 TGTGCTGGCAAGCAAAATAGGACACGTGAGCACACACGACGTGCAGATGGCACGCAGAGC 4081 ACTGCAGTATGCGAAGAGCCACAACAACATCCTCACCACCACCGTCGAACACACGACCGG 4141 TGCGGCTGCATGCGGTTATTACACGACAGCACAATTGTCTGACCTAGAAAAAGGTCAACA 4201 GTTTCCGACAGCACAAATTGTGACCTACGTCGATGCCTCCTTTGCCATGGACGCGGGCCG 4261 GCGCTCGCGCTCCGGCATCGTCATCTGCGTCAACAACATGCCTGTGTATTGGCGCTCCAG 4321 CAAGCAGACGATCACGGCACTCTCCGCAGCAGAAGCTGAATACTCTGCTATCACCGAGGG 4381 CATCAAGCACACCATTCACGTGAGAGACCAGCTTGACGAAATGATGATCAAGCACAGCAC 4441 TCCAGTCATCCTCACCGATTCGATGTCTGCCATACACATGGCAAACTCCGACAAGATTCA 4501 GGAACGCACCAAGCACTTGGGCATACGCATGCAGTTCACACGCGACCACGTACGGAAGCA 4561 GACCGTCGAGCTGCAGCACGTGCCCTCTGGTGACCAAGTCGCTGACATGCTGACCAAACC 4621 CTTGCACAAGGGTGCGTTCCACCGACTGGTGCAGAAGATTATGCATCACGAATGAACCAA 4681 CCACCACGATCAAGATTCTCCCAAGGCGCATCCATTCAGGAGGGTGTGTCAGCGGAAATT 4741 CCCGATGACATGTTTGTGTGTATGAGTGAGTGTGAACGAATGCGTTGTCTTGACGTGTGG 4801 GAACACCATGATTTCACCATGGTCTGACTTTGTGAAAGACCCTCTTTGTTTGTCCCTCTA 4861 TCAGGTGATCTCCTGATACACAATGTGTGAATGTACACGTGTCACTTTAATAGTGTATAC 4921 GTGTACCCTCTTCCTCTATCATATGCGTGATATGTACTGCATGGTGTTCATTCTCTTCTG 4981 TCCCCGATTCCAACGACACCACTGCGTGGGTTGTCTACCAAGGTTTACTTCAGCTGTGAA 5041 AGCTCTCAATACAAGTCTCAGGGAAAACGCTGAGGAACAATCTTGTCA Features 1-362 5' long terminal repeat 363-427 5' untranslated region 428-4672 Hypothetical Gag-Pol coding sequence 4673-4726 3' untranslated region 4727-5088 3' long terminal repeat Conceptual Protein Sequences >Hypothetical Gag-Pol 1 MNQFKHQDNPMGKVPVFNGVNMRYSVWAMRVRNYMLERDCWLAVSEGDNDEEYERMIRSL 61 SESQQAQYRQMYGRAMGIIGNAVGGALTKIVSGPTIRGDPRKAWFALKQLYDRRDDEEIS 121 RLSASIFARTWGKDDNVQTVMGDVIDAYDEITAAQGVLSESMVVNHVLNILPDKYRNVAQ 181 IIRVTQRQLDLRELLKMLLLEQARARTKTQSQHQPLIAYAQKGDARKDKRRCWNCDKPGH 241 LSKDCRSRKKKTPGHGRKPRRDQDRTRQYRHEKTFKLAETAHVTSTAAAGDNGWLVDSGA 301 TTHVSSVRDDFLTLSEESVDVTLADGSTVTATGRGTVRLQTSAGAVTMTDVLYLPRGQAR 361 IISMGKIMEKGNDVYSKAGSLYITFPDRTQIQLQKRDELYFLPQTTTSATTAAAVQENTA 421 TSATTATAIHENMGHRACDPCIKGKMRNANSKKFSGNSNNSYKPGEMLCADLTGPHPPTL 481 TGGRFAVVLLDVATQYSSVGLMATKKDLANTLDSMLMTLPRAMGIGHRVNTLKTDNEPLF 541 STPAMLKVLHKHKLDMRHSPPYRPEKNGDVERHIQTLTSTARTLLIDARLPTEFWGCALL 601 HASHVHNHLKPLQRLKLHPVVQDMKQFGVTAYVRDRNGDKWRPRTWTGIYVGFNPQCRAH 661 KIYNPESHNVISTYDVRFLTMEESWLRPVLHQREDFLPPSLDLAQRPLPSTTTTTTHEPV 721 MTQQQQTHEPVMTQQQRMHQPVQIQRQPQREKQKQARRVRKQPQQQTTHRKQTSPVQSLP 781 PQQTTPVQALPPQQTTPVQSLPPQQTSVQTLPTQHKQASEPPQQLTQTTQPPQQVQHMTQ 841 PPQQVQHMTPTTSDQGPRRSARIRAQQQKTTAAKATAAQARAGFEEAERSEMDSLRRHGV 901 LERVEEKGYVSTPVLPTMFVYSTKSDGKRKARLVVRGDLDQHDTSTYSPTASRSTLLTLM 961 ASTTAPLMVMDVTTAFLHADLPRDVHVKIRGEVFRLHKALYGLKDSPRLFHQHIHSILTR 1021 LSWQATITDPCLYTRQHQQHGQTYLMVYVDDLLYVGGGQKEVVEELRPHLQIKHKQGQQH 1081 DYLGIRITRTTTSAATTTSTTTTISLTPYLSAIAGIGPFRVSTPITIDHGRQIQGGGKEG 1141 AMVSGGGRADNKEQTRQQQLPLTQQKQHKHRLKEYQQVLGTLTYAASTARPDLAYAASVL 1201 ASKIGHVSTHDVQMARRALQYAKSHNNILTTTVEHTTGAAACGYYTTAQLSDLEKGQQFP 1261 TAQIVTYVDASFAMDAGRRSRSGIVICVNNMPVYWRSSKQTITALSAAEAEYSAITEGIK 1321 HTIHVRDQLDEMMIKHSTPVILTDSMSAIHMANSDKIQERTKHLGIRMQFTRDHVRKQTV 1381 ELQHVPSGDQVADMLTKPLHKGAFHRLVQKIMHHE >Salpingoeca rosetta pseudovirus-6 (Srospv6) [RepBase Type:LTR/Gypsy; Repbase Reference Repeat:Copia-24_PX] 1 TGTTGGTGTTGGTCCGTTCATTCTGGTGATGTGACGTACGTATGACGTCACGACCTACAT 61 CCTTTGTTCTCTTGCTTTAGACTTATTGCATGTACATTGCATGTCATCTGGAGTATTCTC 121 GTACCAATACAACCTCAGCACCAACGCCAAGGGAGTGAGCAGCTAAGAGATTATGAGACC 181 CATGAGGTCTGTGGTGTGAGCAGCGACAGCACCCAGACAGCACCTTCCACAGCCATGGAC 241 CAGGTGCGACATGACATACCGCAAGGGCCGGTCTTTGACGGCAAAGTGTCGTCACTGAGA 301 GTGTTCAAGGTGAGAATGAGCTACTTCCTCATGAAGAATTGCCCAGGCGCAGAGAGAGTG 361 CTCGAGGGGAAGGAGGTTACCAAGGAGCAAGAACAGTTTGCGTACCTGTGCATCACCTCG 421 GCTCTAGAGGGATGTAAAGGGACAACAGCAGCGACTGGAGCACTGGGTGAAGAAGATGCG 481 GCATCAGCATGGAGGACTCTCCTTGATTACTACCAGAGACCAGAGAACGAAGTGCAGAAG 541 ACGAGCCATCTCGTAGACTTCTTCAATGACACCAAGATGATGCCAGGAGACAGTGAAGAC 601 GAGTATGCGAAGAGACTCTACGACGCACGCGACAAGTTCTACTCTGTGTACGACAAGGAG 661 GAGACAGTGACCTGGGGGAAGGTGGCCACAGCGATTGCTTTTGCCAACTTTCACATGACG 721 AAGCCAAAAGCCTTTGGTAACGAGATCAAGACGCCACCAGCATCGGTACAAGAGATGACG 781 AAGCAGATCCTCTCCAGCAACCCGAAGCTAGGGGAGATCAGGGGGGAGGAAGCCGAACAA 841 GTACTCTACATCGGCAAATCACCCCAGCGGCCCAAGAGGGCGAAAACCATGTGCAAGTGG 901 TGCCGCCGATATGTGTATCACCACGAGGACAACTGCTACGACAACCCCCACAACAAGCAG 961 ATGAAACCAAATCGGCCGGCCAAGCAAGGACAGCGGACCCAGGGGACTTGGAGGCACGTC 1021 AAACAGAGACTACAACCCGCCAATGGCCCAGTGATGTACAACATTCAACCACAACAACAA 1081 CGCCCACCGCCATACGGAATTGGTGTGGACTCGCAGTCTTCAGTACACATTTTTTCCGAC 1141 ACAGCATACTTCACACACCTTACGACCCGGACACGGCCAGCACTGGTGAAAGGCCTGGGC 1201 GGTGTGGTGAGTGTGTGGGAGGAAGGCACGGTGAGGATGGTTGTGGTAGTGGAGGGGAGA 1261 GAGTAAATGAAAAAAGTCGCCGGCCTTTGGCAAAAGGTCGCCAAGGGGGCGTTCCCGGTA 1321 AAACGTCGCCGCTGCTGCGATTCGCGGCGAAACGTCGCCACCCCTCTGTCCCACAAGCGG 1381 TAAAACGTCGCCGCTGCTGCGATTCGCGGCGAAACGTCGCCACCCCTCTGTCCCACAAGC 1441 GGTAAAACGTCGCCGCTGGTGCGAGACACACACGCGTCGAGTGACATGTGCAGCATCCCT 1501 GTGTGCGCGTCCTTGATATTGCGTGGATCATGTTCGTCGTTTCGTCGGTTTACTCGTGCA 1561 ACAACAACACCGGGTGCCACAACAACGGGTGCCACAAGAACAAGAACAACAAGAACAACA 1621 AGAACGCGAACAACAAGAACAACAAGAACGAGAACAACAACAACAACAACAACAACAAGA 1681 ACAACAAGAACAACAAGAACAACAACAACAACAGCAGCAGCAGCAGCAACAACAACAACA 1741 ACAACAACAGGTGTCACAACCACGACGCAGCGGACGCTCCGGGCGCAGAACCGCACATAT 1801 ATACACGTACACACGCAAGCACTTACAAGCATATAATCGTGTATGTAAGCTCAATACACA 1861 TTCACACATGCGGCGCGACTTGAAACCTATTGCCGTCTCGTATTCCAGCGTGATGGGGCA 1921 TTTGCACCGCTAAATGGATCTTCACCTGATAGATATTCCCACCAGTGCCCACACGGAGTG 1981 AGAGTTGGGCTATCGGCACTCTCTGCATGTAATCACACATACGTACGGGTACAAGCACAT 2041 GCACGCACGTAGGCGTTCTGGAAGACAAGAGAGAAAAAGCGAGCAAAGCATGTCAAACGT 2101 GGGGGTGGACATGTTGGTTGGACATCTCCAGAGGCTCACCGTTTGGCCCTCTTTGGGTAG 2161 ATGATGTTGCTTGCGCTCACACGTGGGAGGTGCTCGAGGTCAACCAGTTCCGTAGCGGGG 2221 CTACGATGATCTTCTCGCTTTTTGGCTCGCCGAGCCTGAATGTCTTCGGCTGTAGGCGTT 2281 GGCTTCAGCCAAGGTTTGCGGTGCATAAGCTTGAATGTCATGGCCAGATCCGTCGGGGTC 2341 CAGTCTGCCTTCCCCTTGATGTAGTTGTACCACTGCCACAGAACACGGTCCTTTTTCTGT 2401 AGGTTGCTGATGGTATGGAGCGGTATGCCCATAAAGTACAGTGTTGCGTTGGCTAGCGCA 2461 TGTAGTCCACACGACACGCTGTCATTTTGTCTAGAGACGGGCACATTCGTCACTTGTCTT 2521 GTGCCGTAACATAGCTCGACTTGCTTCAGCACGTTCTCATTTGGGTGGCCGGCATTATTG 2581 CTGTCAAGGATGTACACGCGCCCTGACTCGTACACTGACGTACACCAGTGCATCTGCCCA 2641 GTGAAGTGAATCTGTATGCAAACAACAGAGAAAGTGTGTCATGAGAATGAGAAGCGTTGG 2701 TGCACGTGATGACAATCAGTGGTGGTTGCTGTTCCTTGTATCGGCATGGGTGCTGTTGGT 2761 GGTGCCGGGTGTTTGGTGTGCTTGTTGTTTGTGCATGTGGTTGATAGAGTGTCTTCCGTG 2821 TAGCAACTAACCTGTACACAAGTGGGTGACTCCACACGTTTCATCCGCGATCGTCCTGGA 2881 TCAGGGATCTCAGGGCACGCCGACTCGAACATGTTGAGGCGACGCAGGTACCGCCAAATA 2941 TCCGAAGTCTGGAGCATGCGCCTGCGCTGTCCACGGCGCAGGCGTGACGAACGTCGATGC 3001 TGTTCAATTTGCGGTACCTCTGCTTCGTGCTCTTCACCCGCCTTCTCCTCGGCTTCTTCT 3061 TCTTCTTCTGCTTGCTCTCCACCCGCCTTTTCCTCGGCTTCTTCTTCTTCTTCTTCTTCT 3121 TCTTCTTCTTCTGCTTGCTCTCCACCCGCCTTCTCCTCGGCTTCTTCTTCTTCTTCTTCT 3181 TCTTCTGCTTGCTCTCCACCCGCCTTCTCCTCGGCTTCTTCGTCGTCTTCGTCGTCTTCG 3241 TCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT 3301 TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT 3361 TCCATAGCCTCTCCATGTTCCTCATCCTCTTCCGCTGCCGCCTCCTCTCCTTCCACTCCT 3421 ACTCCCTTTTGCATCCTTCTTCCGTCAGAGTCGGGTTCGACAGCATCCAGCAAAACGTGG 3481 CTTGTGTCCTGCTCTTCCTGTTCAACAACCCCTTGATGTTGTTGCAGCTCCTGCCGCAAG 3541 TGTTTGATTTGCGTTAGAAGCCCCCGTCGCATGTACTCACTCTTCAGGCGCTTGAGTTCA 3601 AGCCCATCCTCTGGCGAATGATGCCGTAACATGGAATTGTACTTGATCATGTCCAGCCGC 3661 AGTTGGTTCTCTTCGGCCATGAGGTCACGCAGCAGCTCAGTCTTAAAGCGCACGGGTGCC 3721 GACATGGCCAAGTGTACATCCTCCGCCGTATGCCGTGGTTGCTGCTGCTGCTGCTGCTGC 3781 TGCTGCTGTTGTTGTTGGTGTTGTTGTTGTTTTTGTTGTTGTTGTTGTTGTTGTTGCTGC 3841 TGCTGCTGTTGCTGTGGTTCTGACACCTGTTGCTGCTGTTGTTGTTGTTGTTGTTGTTGT 3901 TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGT 3961 TGTTGTTCTTGTTGTTCTTGTTGTTCTTGTTGTTCTTGTTGTTGTTGTTGTTGTTGTTGT 4021 TGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTCTTGTTGTTCTTGT 4081 TGTTCTTGTTGTTCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT 4141 TGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGC 4201 TGCTGCTGTTGTTCTGACGCCTGTTGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTTTGGT 4261 GACTGCCGCCGTGTGCTGGTTGTATGCTTCTCCCACCGTGAAGGGTGTCTCGACTTTTTT 4321 CTCCTCCCGCGTGTCTGAGAGATGAAAGCACACGTGCGGGAGAGAGCGTCGATGGTGAGA 4381 GAAGCCACAGGCAATGTGAAGGACAAAGATTGTGCCATGACTACCATCGGAGACCACAGG 4441 AGACATGAATAGAACTTACCCGCGGGATTGCCCATGGCAAGACGTCGACGCCCACCAGAC 4501 TCGTTGGGTAATACATGGAAAACTCGTACCAGTTGCGCCTGTATGTGTCTGAGCTGTAAT 4561 GTTGCGGGATGTGTGGAGTGCTCTGGTGGACTGCAATCACATGTCGACATGGTGTGTCGT 4621 AATGCCTTGCGAACATACACGAACAGGCGCCGTTTCTTATGGGATACTCCTGCCCTGATG 4681 CCTCTGTCGCAACGAACTCAGTCGGACCTGCGAGTGAAACATATCAAACGTCATCGTTAG 4741 AACAAAGAAATAGGGTCACTTGACCAACATCCCTCGCACAACCCAATAGTCTGTGCAATG 4801 CAAGCGACTAACCTGTTTCCCTCGTGGAAATTGTCCCTGCTTCCACGGTCTGCTCGTCAA 4861 CCAGGCGTTGGCAGAATGTAGTCTGGCTTCCATGGTTGGCCGCAAGCGCAGACATTCGCT 4921 GGCTTAGGACAAACTTGATAAATCCTTGCACAAGCGCATGCAGCGGAAGCTCCCGTGCCT 4981 TTCGTAATGCAGCGTTCAGACTTTCTGCCGCGTTCGACGTCAGATGTCCATACCTGCATC 5041 GGCATAGCAAGGGATGTGTCACTGTAAGTGTGAGCACGACCACACCAACAAGTCTCCCGC 5101 TCTGCCCCCACATCCACATACCGAGCTATTCGCGAGTGGAGCAGCGTCCACCGATGCCGC 5161 ATATCGAAGAGGAAATTCGCATAGTCGCGGTTGACTGCCCGGAAACGCCGCAGGACTTGT 5221 CGGAACGTGTCCTCGGACGAAGTCCTAGCCACTGCTCTAACTTGCCTTTCCGCAAGTCCC 5281 GCTTCCTTGGCGTTTTTGGACAGATGAAACACGCATCGAACATGCTCGACAAATGATGAG 5341 AACACTTCACAGGCAGCACCTATGCCCTTGTCACCGTCTGACACAATGGCAATGCGGGAT 5401 GATCGCAAATGCGGTAGGGTGTCAAAGACTCGGTCGAGAAGCTTCACATAGTTGCGCTTG 5461 TTCTCAGAAGGGCAGATGTAAATGCCCAGTGGAAGTAGTTTGGCATCAGCATCAAGCTGC 5521 GTGAGGGCAAGCATAACGCCTGTGTTTCACGACAAGAAGTGGTGCATCACAAGAGACCGT 5581 GAACTGATGTATCACATAAGGGCGTGGCATGAAATAGCACCCGTAGCAGTAAAACGCATG 5641 ACACAACAACAGTCTTTGTGCAATACAAATGCGGCAGCATCTAAGCACATCTAACCCCAG 5701 CTCCACTCCCTCACCTTTCACACCACCCCTTAAGTGTGTTCCATCTGCGAACAGCACCGG 5761 AAGCCCATTTTTGCTCAGCTCAACTGGGCATGTCGCGTAGAAGAACCCCGTCACCCGTTG 5821 GTTTGAGCGCGATGTGTCCAGGTTGTAACTGCGAGGATGACCTCTTTGGACATCCCCCTC 5881 CTCCTCCTCCTCCTCATCATCATCATCATCATCATCATCATCATCATCAATATCATCATC 5941 ATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATC 6001 ATCATCACCACCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATC 6061 ATCATCAGCATCCTCATCTCTGCTGTTGTTGATGGTGGTGGCAGTGTTGGTTTCGTGTCC 6121 ACCTTGTTGCATATGCTGTCTGGCAGGTCGACTGAGTAGTGCTGCTAAAGTCATCGTCCT 6181 TGGTGTCTGCACGGCAAACACGGTCTCAGTATGAAGTTCACATCTCTGCCTACCATCGCG 6241 TTCAACTTGTTCTGGAAGCACACACAACGCATCATACTGTGAATAGAACGCGCTGCTCAA 6301 ACAGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA 6361 ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA 6421 ACAACAACAACAACAACAACAATACAAACACACCTGCCAAATGGGCAAGCAGCCCAAATT 6481 GCCTTTTTGGCGAGCTTCTGTGGATCCTTGCGAGACGCAGGTAACACCGCGCCTGGCTGC 6541 GGCTCAGCGTGCAATGGAACTCACGCCGAGCCGCCTCGATGAGATCCGCTGGACATTCAG 6601 CAATCATTGTCGGGTCAAAGCTGTACAGGTCGTGCGGGGTTACTTCACGTGGATGAGACA 6661 AACATATTGCAGAATGGTCCACGAAGCAGATCACACGCCAACCTGTTTCGTGGCACCACG 6721 CTTTGACATGGAAGGGGCAATCCTTCGTTCTGCAAATCCGGTGCAGCCGCTTCTTGGAGG 6781 AATGGCGCGCAGAGATGCGCGTTGGGCGACCGCATCCAATGTCATATTCTCTCACCTTCG 6841 CCACTATCTCCTCTTTGCTCTCGAAGTCACCACCCTGTAAACGCACACGGGCAGCGGCAG 6901 CAATGCTGCGCAGCCACTCTCGCCTGCGTGCTCGCGCGTTCTCCTCCTCCCTGTCTGTCA 6961 TGTTGAGCCGCGAATGACGTGGCACAGCATATTTCCATGATGATGTCCTAATCTAAGCAC 7021 CAGCGGCGACGTTTTACCGCTTGTGGGACAGAGGGGTGGCGACGTTTCGCCGCGAATCGC 7081 AGCAGCGGCGACGTTTTACCGCTTGTGGGACAGAGGGGTGGCGACGTTTCGCCGCGAATC 7141 GCAGCAGCGGCGACGTTTTACCGCTTGTGGGACAGAGGGGTGGCGACGTTTCGCCGCGAA 7201 TCGCAGCAGCGGCGACGTTTTACCGGGAACGCCCCCTTGGCGACCTTTTGCCAAAGGCCG 7261 GCGACTTTTTTCATTTACTCGGAGGGGAGAGAGAGAGTTCTCACTTTCCAAAATGTTCTC 7321 CTGTTGCCTGAGCTTGGCTTCAACATACTTTCTGCAGGACGACTTGTGGAAGCAGGCATG 7381 ACAGTGACTCTGCATCCCGAGCACCCCAGTCTGAGCGATGAGCACATGACGATGGAGCTG 7441 GCAAAGAATGGGGCAACATACTACTTGCGTGCCAAGCCACACCGACCTGGCCAACCAACT 7501 CAGCGATGCATGGCCATCACGCCCTTGGAGACATGGCATAGGCGGCTCGGTCACCGTGCG 7561 TGGCAGGATGTGAAACGAGTGCTAAGCGGGAACGGCATACAGACCACGACAGACGAACCT 7621 GACTGCACGGACTGCCTACCCTACAAGACGCACCGGAAGCCGGTGAAGAAGAAGTCACAG 7681 CCACATCATCTGGAACCTGGCGATCGAATCCATGCGGATATCCTGGGCCCATACCAAGGA 7741 TGCCACCAGGGATACGCGTACGTGATGCTGTTTGTGGATGAAAGATCCAGGTATGCTGAG 7801 GGAATCGCGATGAAGAAGAAGTCCGACGCAGCAGCAACGCTTGCGCAGTTCGTTGCGACT 7861 ACAGCTATCCCAGTTCAAAGAGGCACGCTGATGCAGCTTGACTACGATCCAGTGTTCAAG 7921 TCTCAAAGATTTGCGACAACAGCGACAAGGCTCGGGATTGGTTTGCGCTACTCGCCACCC 7981 TACACGCATCAGCACAATGGAGTGGCAGAAAGGAACTGGAGGACGATCAAAGAAACAGCT 8041 GCGGCCATCCTAGGAACGTCGGCGATTCCACCACAACAGCGAGGCCGGTTCACCATTGCG 8101 GCTATTCAACACGCGACCACAATCTACAACTGCATGCCACACACCGGCACGGACCATACG 8161 ACGCCATACACAGCCCTGCTGGGGAAACAACCACCTCTTCAGATGCTGAAAGTGTTCGGT 8221 TGCCGCTGTGTCATCTATGATGAGACTCAAACCAGCGAGTCGCCATTGCCCCCGCGAGGA 8281 CTCTGGGGATTCTACCTCGGGCTGGATCAGTCTTGCAACGGGCACCGTGTGTTTGTCCAA 8341 GCCACGGGGAGAGTGCGGGCAGGAATCAATGTTGACTTCGTTGAGCGAGCACAGGCAGAA 8401 CAGCAACAACAGCAAACGGCTGAAACGAAAACTGACGGTGAACATATTAAAGCAGCGCAT 8461 CGCACGGTCTTCGGCGGACGCGTCACAGCACAACAACAGCAGCCTGTGGCCTACGACGAC 8521 CACAACAGTGGACACGTCGGGACAGAGCAACATGCGGCCTACGACGACCACAACAGTGGA 8581 CACGTCGAGGCAGAGCAACATGCGGCCCACAACAACCACAACAGTGCACAAGTCGGGGCA 8641 GAGCAACATGCGGCCTACGACGACCACAACAGTGGACACGTCGAGGCAGAGCAACATGCG 8701 GCCCACAACAACCAAAATGGTGGACACGTCGAGGCAGAGCAACAGGCGGCCTACGACGAC 8761 CACAGCAGCGAGGCAGAGCAACATGCGGCCCACAACAACCACAGCAGTGCACACGTCGAG 8821 GCAGAGCAACATGCGGCCTACGACGACCACAACAGTGGACACGTCGAGGCAGAGCAACAT 8881 GCGGCCTACGACGACCACAACAGTGGACACGTCGGGGCAGAGCAACATGCGGCCTACGAC 8941 GACCACAACAGTGGACACGTCGAGGCAGAGCAACATGCGGCCCACAACAACCAAAATGGT 9001 GGACACGTCGAGGCAGAGCAACAGGCGGCCTACGACAACCACAGCGGCGAACACACGGGT 9061 GAAAACGAACCATCAGAGGATCACCTGATGCCGACTGTGGCACCTGAACACGAGATCACA 9121 CATGAACTCCAAACATCAGCAGCCTCCTCGACCACAGCAAACACGAAACAGCCGCTGAGG 9181 CGATCCAGCAGATCCCGAAAGACAGTGGTGAAGATGTGTCTGACGGCGAATGTGACAGAC 9241 CGGGTTACACCAAAAACGTGGGGGGAGGCAATGGAGAGTGATGACAGGCAGAAGTGGATG 9301 GAGGCATTCTCGGAGGAATGGACCAACATGACCACATTTGACGTGTTTGATGTGGTCGAA 9361 GCCAGAGACATGCCGATGAAGACGAAGGTTCTGCCGAGCACGCTTGTACTCTCGGTGAAG 9421 CATCAGCAAGATGGAGAAGTGAGGTATAAGGTGAGGATGGTATGTTGCGGCAATCGACAG 9481 CATTCGTCGACGCTGGGGGAAGTGTTCGCGCCCACAGCACATGCGGATGCACTGAGAACA 9541 ACGCTGGCGGTGGCTGTGATGAGGGGGTGGCAACTATGTCAATTTGACGTGAAGGCGGCT 9601 TTTCTTCATGCGCCGATCGATGACCACAACATCTATGTCAGGCCACCGGCAGCGGCCAAC 9661 CTCCCAGGCAGTGCAGTGCTGCACCTCAAAAGGTCGCTCTACGGCCTTCGCCAAGCACCC 9721 CGACTATGGCACCAGCATTTGAGCAAGGAGCTGCAAGCGCTTGGGCTCCTCGCAGTCAAA 9781 TCAGACGCATGTGTGTTTGTCTCCGCAACAGCTATCGTGTGTGTCCACGTGGATGACTTC 9841 ATCGTAGCAGCAGACAGCCAGGGACGCATTCACGAGATCAGCACCAAGCTCGGCAGGCAT 9901 CTGAAGGTGAAAAACCTCGGGGAGCCTACCTCCTACCTGGGCATGGACCTTCACCGCACC 9961 ACAAACGGGCTGAGGATCAGCCAAGAGCGGTACCTAAGAGGCCTTCTCCAAGAACATGGA 10021 CTACAGGACTGCAAACACAAGGCCACCCCGCTACCTCCAAAAGGAAGGCTTCACACAGCA 10081 ACAGCACCGGACACGGACGTAGGGGAATACCAGCGGCTCGTCGGAAGCCTCATGTATCTG 10141 GCAGTCATGACGAGGCCAGATATCCGGTATGCGACGTCAGTACTTGCCAAACAGATGGCA 10201 GCGCCAACGAAACAACACCTACACGCTGCCAGACACGTGCTCAAATATCTCAAGGGACAG 10261 CCTGACCTCTGCATCGTTTATCGACGGCAACAACCACAACAACCGCAACACCAGCAACAG 10321 CTGACAGGATTTGCAGACGCCAGTCACAACACATGCCCTGTCACCTCAAAAGGCCATGGC 10381 GGCTTCTGCTTCACCCTGGGCGGAGGACCAGTATCTTGGTCATCCAAGCAACTCCCTCTT 10441 GTCACGGCGTCGACAGCAGAGACAGAATACGTCAGCATTGCCACAGCTGCGCAAAGAGCA 10501 GTGTTTCTAAGACAACTCCTGAAGGAGCTGGGTGAAGACCCCGGCGTCACAACCATTTAC 10561 ACGGACAACCAGCCGGCAATTGCCATTGCAAACAACAACAGCAGCAACGTCAGCAGCAAA 10621 CACATTCATCTGCGATTTCATATCCTGAGGGACTTAGTTGCAGAACGCGCCATCAAGCTG 10681 CAGTATCAACCTGGTAGCACTCTGCTGGCTGACATGTTCACCAAGGCACTGCCCAGAGTC 10741 GCCCTTGACACCTGCAGGAGGCAGGTGCTGAGCAAGCCTTGAGGGGGTGTGGGGGTACTG 10801 AACACAGCACGACTTCAACACATACCAGAAGTTGGTGCATCGCTTTCTACACAAGTTTTC 10861 ATTGGCGCCTGAGATGCAGGACACTGCCGTAACAGCTTTCCTCAACAGCTTTCAACAACA 10921 GCCTCCTGACATGGCAGGCAGACGAAACAACCACTTCAAGCCAAGAGAGACAACTACCCC 10981 TACGCAGCAACAAGAGTCTGCTTTCCGTGTCTGCGAAAAGGGCGACAGCGTTGGGTGCGG 11041 AGGTTGAGGGGGTGTGTTGGTGTTGGTCCGTTCATTCTGGTGATGTGACGTACGTATGAC 11101 GTCACGACCTACATCCTTTGTTCTCTTGCTTTAGACTTATTGCATGTACATTGCATGTCA 11161 TCTGGAGTATTCTCGTACCAATACAACCTCAGCACCAACGCCAAGGGAGTGAGCAGCTAA 11221 GA Features 1-168 5' long terminal repeat 235-10779 Gag-Pol pseudogene 11055-11222 3' long terminal repeat >Salpingoeca rosetta helitron (SrosH) [RepBase Type:RC/Helitron; Repbase Reference Repeat:Helitron1_AG_he] 1 TTTCACTTGTTACTTTAAGCGCACAGGGGGGGCGGAGCCCCCCTGGGAAAATCCGTGGGC 61 GTGGTGGCAGCATTTCTGCGTCCGCTCGCGGACGCAGAGTTTTTCGGTGGCGCAGCCACC 121 TTTTTCTGTCAACGTTTGCTCGACAAACTTTGCTCCCATCCGCAGAATAAAAAAAATTCA 181 CCAGCCAGGTACTGAAGTCAGTCGACCAACCAGTCACCTTCCAACAACAACAACAACAAT 241 GATGACCGAAGGAACAACACGCACAGTGCACGCTGTTAGGCTGTTCTTCTTCTCGCTTCC 301 TTCGTCGGAACATGTTCGTGCAAAGCTGGCTGAGGAAGCTGGCTGAGATGATGTGACAGC 361 CAGGCAAGCACAAACCGTCCAGCACATTGAGCAGCCACGCGCGGCCCGCTTCCAAGCGAC 421 GGAACCGCAATTAACAACCCCAGCATAGCATAATCAAGTCTGCATGCTTTTTGGGAGCGA 481 CCGGGTCACACGGCAGTGCTTTGTCGGAACGTGTTCAAGCAGCTGGCAAGCAAGCAGGCA 541 ACTGTGTGCACTGTCTTCCCCGCGACGCCGCAGACATGACAGCTGTTGGAGCGCCCGGTT 601 GGGCGACGCACTTCGCCTGCGCCTGCGCTTCCCTTTGCGCGAACACGTTTGTGTTGCCCT 661 GCGCTGGCCATGGCGTTTCAATGACCGCATATGCCTCCGCCTGAAGCTGAGGCGCCGTGA 721 AGATGTCAGGCCGTCGAACTCAGCGATGCCGGTGTTGTGGAAACCCCGGTCACAACGCAC 781 GGACGTGCCCCTTGGTGAGAAGGCGGGCAACGCCACGCGAGGCGCTCCGGGATCCAAGCT 841 GTGGCAATGGTGACGGCGAGCCCCCTCGCCAGCGTGCACGCACCACTCATCCTCAGCCAC 901 AGCAACGCCAACAACAACCACAACAACCACAACAGCAGCAGCAACTGGGGAATCGGGCTC 961 CAAGCTGTGGCCATGGTGACGGCGAGCCCCCTCGCCAGCGTGCACGCACCACTCATCCTC 1021 AGCCACAACAACGCCAACAACAACCACAACAGCAGCAGCAGCAGCAGCCGCCGTCGCGTG 1081 CAGGTCGGACTCGAGAGCGGCGGTGTGGCCGCGGCGGACAAACCGGTCACACGGTCACGA 1141 CCTGCTCGCTGTCTGCGAACCGCATGGACGACGTGCATCTCCTGCCGCCCCTGACACGAG 1201 AGTGCCCTTATTGCGGTGCGCTGCTGTTCGATGGCCAGCGCCGCGAGGACGGCAGTGAGA 1261 CCAGCTCCTTCTGCTGTGGCAACGGCCGCGTTCATCTCGAACCCATGCCAGCACCACCGG 1321 CGCCGCTGCGACAGCTCTGGGAGGACCGTGGCGAGCGTGGTCGCATCTTCTATGACTACA 1381 TCCGCCTCTTCAACAATGCCCTCGCCCTGGCTTCTGCGCGAGCGTCGTGGGTGAGGGCGG 1441 AGCGTGGGTGGAACCCACACCTCATCATACAGGGGAGCCTTCATCACTGCATCGGGTCGC 1501 TGCTGCCTGCCGAGGGCGAGGAGCCGCAGTTTGCGCAGGTGTACGTGTACGACAACGTCG 1561 GCCAGGCAACTGCGCGCCGCCTGCTCGACATGCGACAGCGGATCGCGGCTGGGACGAGCG 1621 TGCCCGATTCCATCTGCGCGAACATCCTCACCACGCTCCATGACATGTTGGTGGACTGCA 1681 ACCCATACGTCGACGCCTTTCGTGATGCCGCCTCGGCCGCGCTCGCGTCTTCGGGCGATG 1741 ATGCTGTGCCGGACCTGCAGTTGGTGCTCAACTCCGAGAACAGGCCCGCCGATCAGCACG 1801 CGCGCCGCTACACGTCGGGCAACTCCGAGGAGGTGGCCTTGCTGTGTCCGGATGACCAGG 1861 TTGCACAGCGGGACCTGGTCGTGTACCCGAGGGACGGCGGCATTCAGTTCATCAACGAGA 1921 CACACCAGGCCTGGGACCCGCTTCACTTTGTGTTGCTGTTTCCCGATGGCACACCGGGGT 1981 GGAGGATTGGCGTGCCTCTGCGTGTCCCGCCGTCGCTGGGTGGTGATCAACGCCGCCCGG 2041 ATCAGTGTGGTGGTGCTGTCGTCGATGCAGAGGACGTCATGGGGCTCGGCGGCGATGGCT 2101 CGGCCGCCCGTCACGTGAGCACTCGGCAGTTCTACGTGTACCACCTGATGCAGAGGTCGC 2161 AGTGCAACTACCTGCTGCGTGCCGGGCGGCTGACGCAGGAGTACATTTGCTCGGCGTTCT 2221 ACCGCGTGGAGTACCTGCGGCTCCTGTACGTTCGCCAGCATCAGGCAGAGCTTCGCTCCG 2281 CCATCTACCAGAACTTGGTGGACCACTCTGGGGAGGATGACGCAGACGAGCAGCAGCTTG 2341 GGCGCCGGGTTGTCCTGCCATCCAGCTTCCTTGGAGGACAACGGCACACCAAGGAGCGCT 2401 TCCATGACGCCATGGCCATCCTTGGCGAATACGGTGCGCGCGCGCCTGTATGTGTGTGTG 2461 TGTGTGTATGTGTGTGTTGTCGTTTGTTCGCGTGTATCGATGCATGTGTGGTGATTTGCG 2521 TGCGCGCGCTGTGTGCCCACTAACGTGTGCGTTGCGTCCTGTGTGCGGTGGCATGTGCAG 2581 GGAAGCCCGACCTGTTTGTGACATTCACGTGCAACCCGGCATGGCCTGAAATCACCCGTG 2641 AGTTAAGGGGTCACGAGCGCGCATCCGATCGCCCTGACCTCCTGGCACGCGTCTTCCATG 2701 CCAAGCTGGCAGCCTTCCGCATCGACCTTGAGCACGGCCACGTTTTCGGGCCCACCCGCG 2761 CGTTCCTGTATGCGATTGATTTTCAGATGCGCGGGTTGCCCCATGCGCATTGCTTGGTGT 2821 GGTGTGCCCAGCCCTTGCAGGGGCCGTCGGACATCGACCGCTTCATTTCAGCGGAGATTC 2881 CCGACCCCGCCACCGACGCGACACTGCACGCCTTGGTGACGCTGTTCTTTGCTTCACCGC 2941 TGCCCCATGTCGCCGATGTCGTGTATACTGAGGCGCTTGGCGCTCCCCCCCCCCTGCCCG 3001 CTGCGTCACAACCACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC 3061 AACAACCACAACAACAACCACAACAACAACAACGACGACGACGACGACGACGACGACGAC 3121 AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC 3181 AACAACAACAACAACAACCTGCCCCTTGCTGGACCCGTTGGTTTTCCCACGACATGACGG 3241 TGTGGCCACCCACGAACATTAACCGGGCACATGTGACGTTCTCCTGGCTGTACATGCCCC 3301 TCATAACGGACGCTCTCTCGCCGGGCGGGAGGGGCCCTTTTCCTTTCCCGCGCCCTTCTG 3361 GCGTATGGAACCAGGTGGTCGCATCTCTGGCAGCGGTGTTCGCTGCAAACGGCATCACCA 3421 CTGACACCCTTACCTACGATGGCCCCTGGCACATCCCCGCAGATGACCAGGAGCGCCTTG 3481 CGCTGCTCGCGGGCGTGGATACATACAACCTCATCGCTTCCATTGCCTTGCAGCACGCTC 3541 CCAACGCATTCCCACGCCTCACTGTTGGCGAGTAACCAACCACATCGCCCCTGTTCCAGC 3601 ACGTGTTACACGACGTGCTACATCTTCTGTTGTCCGTCATGTCTGTCATGTCATGTCACA 3661 ACATCACACTGCCATCCATTGCATTTGTGCATCAAATCCTGTCCACCACCTCATAAAACA 3721 ATGCCAGCGAAGCGGCATAAAAAGTCGTTGCACACTTGTTT Features 1-722 5' UTR 723-3572 Predicted Transposase 874-1083 Predicted intron 2434-2580 Predicted intron 3005-3331 Predicted intron 3572-3614 3' UTR Conceptual Protein Sequence >Predicted Transposase 1 MSGRRTQRCRCCGNPGHNARTCPLVRRRATPREALRDPSCGNGDGEPPRQRRTRERRCGR 61 GGQTGHTVTTCSLSANRMDDVHLLPPLTRECPYCGALLFDGQRREDGSETSSFCCGNGRV 121 HLEPMPAPPAPLRQLWEDRGERGRIFYDYIRLFNNALALASARASWVRAERGWNPHLIIQ 181 GSLHHCIGSLLPAEGEEPQFAQVYVYDNVGQATARRLLDMRQRIAAGTSVPDSICANILT 241 TLHDMLVDCNPYVDAFRDAASAALASSGDDAVPDLQLVLNSENRPADQHARRYTSGNSEE 301 VALLCPDDQVAQRDLVVYPRDGGIQFINETHQAWDPLHFVLLFPDGTPGWRIGVPLRVPP 361 SLGGDQRRPDQCGGAVVDAEDVMGLGGDGSAARHVSTRQFYVYHLMQRSQCNYLLRAGRL 421 TQEYICSAFYRVEYLRLLYVRQHQAELRSAIYQNLVDHSGEDDADEQQLGRRVVLPSSFL 481 GGQRHTKERFHDAMAILGEYGKPDLFVTFTCNPAWPEITRELRGHERASDRPDLLARVFH 541 AKLAAFRIDLEHGHVFGPTRAFLYAIDFQMRGLPHAHCLVWCAQPLQGPSDIDRFISAEI 601 PDPATDATLHALVTLFFASPLPHVADVVYTEALGAPPPLPAAGPFPFPRPSGVWNQVVAS 661 LAAVFAANGITTDTLTYDGPWHIPADDQERLALLAGVDTYNLIASIALQHAPNAFPRLTV 721 GE >Salpingoeca rosetta Harbinger Element (SrosHar) [RepBase Type:DNA/PIF-Harbing; Repbase Reference Repeat:Harbinger2-1_HM] 1 AGAGGATTTCTGCGACACAAGTTTGACGAAATCAAATCTGACAGTTCGGGGCTAGCAATG 61 TCGTCAAAGTCAAACTTGACAAAGCTCAGACAGACAAGAGAGGTTGATGATCCCGCCAAC 121 CACTCGAATCCACAAGCAAGACAAGCACCATGGCTGCAGTGACCTGGAGGGGTGTGGACG 181 AGCAGATGATGATAATTGCAGCATCGCCCCACAAGACGTTTCAGCAGCGTCAGGCTCTGC 241 TACTCTACTTTATGTATCGGCGACTGGCGAGTGTGCCACGTGCCTGGGTTGACATGTCCA 301 ACACCCTTGACTTAACCATCTTCACCAACAAGGAGTTCAAGTACTTCTTTCGCGTGCACT 361 CGTTGAGCCATTTTCGTCGTCTGGCAATCAATCTGAATGTTCGACCTTGGTATGGCCGAG 421 AGCATCGCACAAAGTACGTTGCACTGACGCTTGACGTTCACGGCGATATTGCGTTGCACC 481 CCTTGTCCACTCACCGAAAATAAATTGGCTATCAGGCAACGACACGCCCTTTTCCTGCAC 541 AGATGCGGCGTACTCGTGAAGCCTATGCTGTGCAAACAAGTATCGTGAGAACTCCAGCCT 601 GGAGGCGTGCTTGCTCGAAAGATCCCCAGCAATGTCCAACAGGATCGTTGAAAGTTTCCC 661 TGGAGACCAGCTAAGGCCTACAAACATCGCAACGAGAGGTGGGTGAGGGCTTATTTGAGA 721 TAGACCGCATGCAATTGTCAACACGAGCATGAAAATGCGACTCACAGAAGCTCCGTAGGA 781 TCGTGCTGAGCCTGGATGGATACGACAGACGATGCATCAACAGAGCCAGTGCAACCAGAC 841 CATTACACCTGCAAAGAAGGCACATGAGTTTCAGATAACACAGGAGATCTCTTTCGTTGT 901 CGTTGTTGTATCGAGTGACATGCAGAACTCAATATGTTCCCTGCGTTTGTGTGTGTCACA 961 TAGGGTTCGTGGATGGGACACTCATTGCCATATCTCGCCCCCGACATAGGCGCCATCAGA 1021 TTGCTTCTTACAATGGGTGTGTTCTTCTAATTGTTTGCGTGCTCGTGATGAATATATGTG 1081 TAGGTGTGAGGAGATTGTGTCTTCATCGGGTGCTTGAGTGGGCTCATGCTGCGTTTTCAC 1141 GAACCTCGCTGCTGTAAGGCACAAACGGCACAACGGACTCAAGCTGCAGGCCATATCCCT 1201 TCCCAATGGTATGATCGGCGCGCTCTTTGGACCAGCACCAGGTTTGTTCTCGCTGCCGGA 1261 CATGATGAAGACTCTCGTTACAGCAAACCAACCCCTGCCCACTCAACAGTCTTGATCACG 1321 CTGATATGTGTGGTACTCTCTCTGTGTGCGGGTGCTTCAGGTCGCTGGCATGATGCCAGA 1381 ATCTACTCCGCCTCCCACGTAACGGACAAGCTTGAGCACCTCTCCTCGTCCTTGAAAGTT 1441 CTGGGAGATGCTGCATATGCTCGGTCCGCAAGACTACTGCCCTTGCCTCGGAACGTACAA 1501 AATGGAACACCTGAGGCTGACCTTCGAAGACACCTTTCGTCAGTAAGGGTCAGTGTGGAG 1561 TGGGAGTTCGGGTGTGTTGGAAACTCGTTTGCTTTTATTACATACAGCAGGAGCCTGAAG 1621 GTCGGGCAAGGCCCTGTCGCTTCTTTCATTCGTTGCGCTTTCTTGCTTGCAAACTGCTTG 1681 AATTGTCTCTACGGGAGTCAAACAAGTAAGTACTTTGCTTGCCACCCCCCTTCTCTCGAG 1741 GAATACCTCTTGAATGATTGACTGTGTCTTTTGTGTATTTGCGTTTACTGAAAGTAAAGG 1801 TACCCGTGACAAGCTTCACGAAGCGCTTGGTAACATGAACACAGAATACACGACGCCGAG 1861 AAGAACATGCGGTGGACGGTTATTGTGCACGCCCCTTGGAAAGCGCATCGATTGTCTTGG 1921 TCATTGTTTCCAAGCTCTTCAGCATCGCTGCGAGGACCTTGCTGTTATCCTCCTGTGCAG 1981 AAATCAGATGATGCAACGGATGCATGAAATGAGCACAGGTGAATAAAAACATGACAGCAC 2041 ACCGACAAACCGCGCTGAAGGCAACTGACTGTACCTGCTTCTGTTTCTCGATTTGCACCC 2101 GTTGTTCCTCCAGCTCAAGTGCCCTAAACAACGCAACAATCGTGAATGAGGGGCGCACAA 2161 CCATACAACATCAGCAACGGCAATAGCAGCCACACGCAATCGTATGACGCACCGTGTCTG 2221 CGCCTGTGTCATTGCTTGCACTAATCTCGCTGGAATGGGCTCCTCGTCTTCATGCACGGG 2281 GGAGCGAGACTCCTTGGCACGGCGCTCCATGGCAGCTCGCACAAGCTGCGCATCCTCTTC 2341 GCTTCTGCGCTTCTCATCTTCGCGGCGGTCCTGAACGAGCTTGTCTTCCATCTCGTAAAA 2401 TGTCCTCGCTGCTTGCAGAATGTCGGGGTGAAGAATGTCAGCTCCCAAACCGGTCCGAGA 2461 CTTGGCGCTGTCTGCATCACGAGCGGTAGCTACCTGGCGTAATATGTGTTTCTGTGTGCG 2521 AATGCCACACACACACACACACACACACACACACACACACACACACACACACACACACAC 2581 ACGCACACACGCACACACGCACACACACAATCCAGAAACACCACAGTATATTAAGAGAGC 2641 GCACCCCCGAAGCAGCCATCGCCATCGATGGCATCAACGTTCAATGCTTCTCCATCACGC 2701 TCACAACAAACAGGGACAGAATCACGCACGCGCTGACATACCTGCATGGTTTCTGTTGTA 2761 ATGTTGAACGAACGGTCCCTCTTTTGAACTAGAGCCACGAGCCGGTCTTTCACATCATGC 2821 CACTTAGCTCCAACGCCGTGCTTGCTTTTGAGACGTGGAAGGTCTGCCTCCACGGCCCAT 2881 GTAATGGCTTGCGCCCATTCTTGTGGCGTGAGCTGCGATCGCTTGCGCTTCTTGCGAGGA 2941 TTCTCCATGATTTCTTTAGACAACCTGCCTCTGTCAAACTTTGGACGTTGGATCGGATCT 3001 GACAAGTTTGACGGCGCACTCACTCAAGTCTGACAAATAAAAGTTGCTGACTCGACAAAA 3061 AAGAGCTGTTTGTCAGATTTCGTCTGTCAAACTTGTGTCGCAGAAATCCTCT Features 1-27 5' ITR 28-149 5' UTR 150-1758 Predicted Transposase 434-561 Predicted intron 699-963 Predicted intron 1037-1118 Predicted intron 1759-3238 3' UTR 3086-3112 3' ITR Conceptual Protein Sequence >Predicted Transposase 1 MAAVTWRGVDEQMMIIAASPHKTFQQRQALLLYFMYRRLASVPRAWVDMSNTLDLTIFTN 61 KEFKYFFRVHSLSHFRRLAINLNVRPWYGREHRTNLCCANKYRENSSLEACLLERSPAMS 121 NRIVESFPGDQLRPTNIATRGFVDGTLIAISRPRHRRHQIASYNGGLMLRFHEPRCCKAQ 181 TAQRTQAAGHIPSQWYDRRALWTSTRFVLAAGHDEDSRYSKPTPAHSTVLITLICVVLSL 241 CAGASGRWHDARIYSASHVTDKLEHLSSSLKVLGDAAYARSARLLPLPRNVQNGTPEADL 301 RRHLSSVRVSVEWEFGCVGNSFAFITYSRSLKVGQGPVASFIRCAFLLANCLNCLYGSQT 361 SKYFACHPPSLEEYLLND >Salpingoeca rosetta MULE-like element (SrosM) [RepBase Type:DNA/MULE-MuDR; Repbase Reference Repeat:MuDR-3_HM] 1 GGGTGCGTCTGCATTCCCGGTGGCCCACTCACCGCTCCTGAGATTGCTCCCCACCACACA 61 CCCAATATTCTCCCTTTTGAAAAACGTGTCTGACCCAAATAAACATTTTTGCAACGACCC 121 CGTCCTCTCCACCACACTGCACAACCCACCCACGACTCCACTGCCCTCACCCACCAACCC 181 CTCCCCACTCCAACGATGGCATCCATCCACACCACTCCCGATCAAATCTCTCCTGAAGAC 241 TTGGTCGATACCCTCGGTGCGCACTTGTCATCCCCACGTCTCTTGCCCACAACCAACAGC 301 CTTCATGTGGTGTTCAAGTGTTCCCCTGCCTGGCTGTCCCTCACATGATCGCTTGACTTC 361 ACACAACAACCACCCTGACCTCCTCTTTCGTCTGGCCGCGACGGCATCACTGAAGAGTTA 421 CTGCCTCTGCCCGACGAATCCGCCAATGACACACACGGTGCGCAATGGCCCCATCCTGCC 481 TGTGTCCGTATGTGCATGAGTGTCTTGTGTGTATCTCTGAGTGATTATATGTGTGCGCCT 541 GTACGTGCGTGTGCGTGTTTGTGTTTGCGCTCTTGCGTGCGTGTGCGTGTGTGTACGTGC 601 GTGCATGTGTGTGTGTGTGTGCGTGCGTGCATGTGTGTGTGTGTGTGTGCGCGCGCGCTC 661 TTGTGTGTGTGTGTGTGCGTGCGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGT 721 GTGTGTGTGTTCATGGGTCGCTGCTTGTGCATGTGTGTATCCCAGGGACTGAGTCACAAG 781 TCACAGCCACGGCGCAACAACACCAGGCACATGTCACCACCCCGGGTACGAAACAACACT 841 CCGTGCGTGTGTGTGCGTGCGTGTGCGCTTGTGCATGTGTTTGCGCTCTTGTGTATGTGT 901 ACGCGCGCGCTCTTGTGTGTGTGTGTGTCTGTTCATGGTTAGCTGCATGCGCATGTGTGT 961 GTATCCCAGGGACTGAGTCACAAGTCACAGCTCTGACGCAACAACACCAGGCAACTGTCG 1021 CCACCCCGGGTACGAACCAACACTTCGTGCGTGTGTGTGTGCGTGCGTGTGTGCTTGTGC 1081 GCTCTTGTGTGCATGTCTGTTCATGGTTAGCTGCATGCGCATGTGTGTATCCCAGGGACT 1141 GGGTCAGAAGTCACAGCCGCGACGACACAACAGCACCAGGCAACTGTCGCCACCCCGGGT 1201 ACGAAACAACACTCCGTGCGTGTGTGTGTGATTATGTGTGTGCGCCTGTGCGTGCGTGTG 1261 CGTGTGTTTGCGCTCTTGCGTGCGTGTGTGTGTGTTTGCGCTCTTGCGTGCGTGTGTCTG 1321 TGTGTGTGTATGTGTGCGCGCGCTCGTGTGCGTGTGTGTGTGTGTTCATGGTTAGCTGCA 1381 TGTGCATGTGTGTATCCCAGGGACTGGGTCAGAAGTCACAGCCGCGACGACACAACAACA 1441 CCAGGCACATGTCGTCACCCCGGGTACGAAACAACACTCCGTGTGTGCGCTCTTGTGTGT 1501 GTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTTCATGGTTAGCTGCATGTGCATGTGTGT 1561 ATCCCAGGGACTGGGTCAGAAGTCACAGCCGCGACGACACAACAACACCAGGCACATGTC 1621 GTCACCCCGGGTACGAAACAACACTCCGTGTGTGCGCTCTTGTGTGTGTGTGCGTGCGTG 1681 CGTGTGTGTGTGCGTGCGTGTGTGTGTGTGCGCGCTCTTGTGTGTGTGTGTGTGTGTGTG 1741 TATATGTGTGTGTGTGTGTGTGTGTGTGTTTGCGCTCGTGTGTGCTCACGCCACTTGTCG 1801 GCGATTTCACTAGACACGAAACCTTTCGAGTGCCCAGCGTCTGGCTGTAGCGCCCGCTTC 1861 ACTCGTTTCGACTCTGCCAAGCGTCACATCTGCACGTCGCACAAAGGTGCTGACGTTGCT 1921 GACCTTCTGCAAACGTTCAAGAATAACAGCAACGAGGTTGCCATTGTGTACCCATGCCCC 1981 GAGAACACATGTACACAGACCTTCAGCAGCAGACAGGCGCTCTCCAGGCACCAACTACGC 2041 GACCACGGAAAACAGAAGGTCAGAATCTGGTGGTGATTGTACACGCTTGCAGCGTGTGTG 2101 TGTGTGTGTTTATGCGTGCGTGTGTCTGCGCTCTTTTGTGTGTGTATGTGCGTGTGTTAC 2161 TCACCAGCGGCGCTCTGCCCTATATGCCAGGCGCGTGGTCATTTTCAGTGCCGGAGCGGT 2221 TGCGCAGATGCTGCGTTTTGTACCGCGAAGGAACTCATGCAGCATGTTATTACGGATCAC 2281 GACGCCTCATGTGAGTATTTGATTGTGGCCTGCCTGTTGTCTCCGATCCTGTGTTTCTCA 2341 TCAGCAATGTCTCTCCTGCCCGACGTCGTTCGTTGCAGGTTGTGTCGTGCGTTACTACGC 2401 CTCGTGGAGCAGGTTCGAGTCGTGCATCGCCGCGGCAGAGTGTGACGACTTTGCCCTCGT 2461 CGATTACGTCAAGCGTGACCACACCTGCTGCTTCCCACCAAAAGCTGCCGCGTGGGGCCT 2521 CGAACATGTACAGGTGGAAGAAGAATTCGTCCGGACGTGCTCTCGGCATGGCAATGAGCG 2581 ACCATATCAGGGCACAATCCGCGCTCACCGTGCAAAGGCGCCAAAACCTGTTGGGTGTTG 2641 TCCAGCAATGATGTGGGGGCAGGTCTGCAAAGGCGGGCGAGTGCGGGTGGTGATGTTCAA 2701 CTACCACTCACATTCGAAGGACCTGCGTCACCTACAGCTGCCAGGCGTGTTTCGTGCAGA 2761 AGTGGCACGTCTCCTTCGTGTCTCGGCGTCTTACACGGCCATTTATCATCAGGTGAAGGC 2821 GACCTTTTCCTCGCATCCACGTATCAGGTTAGATCGATGCGGTGTCTGTGTGTGTGTGAG 2881 TGCGCGCGTGAGTGGGTGAGTGAGTGAACGAGTGTGCGTGTGTGTTTTTGTGTGTGTGTG 2941 TGTGTGTGTGTTCTCTGCCTTGCGTGTGCTTGTGTGTTTTGCGCGTTGTGTGCGTCAGTG 3001 TGTGTTTTGTGTGTGTGTGTGTGTGTGTGTTCTCTGCCTTGCGTGTGCTTGTGTGTCAGT 3061 GCACGTTCTTACCGTCTTTGTCGTGCTTGCGTGACTAGCATTTTCAAGCAAGCGCATGTC 3121 TACAACGTTGCTCAGGAGTACGAGCCTGGGCGCTTTGATGCGGATGACGCCGCTTCTGTG 3181 TGGTACGCTGCACAAATCTACAACAAGGAGGCTGGCGAGCACACCCCGGTCATCACAGCC 3241 TTGAAGCTTCAAGGTCAGGAGGCGTTTGAGTTTGGCGGGCCCGAACAGCGCGCCTCAGGC 3301 GATTTCCCGCAAGAGTCACTATTCATCCTTGTGCAGACTGAGTGGCAGCGACGCGTGCTC 3361 AAGGTGTGTGGTGCTGAGTGCCGTGCTCGCGTCTTGAATCCTTGCATGCATGGTCAATGA 3421 TGTGCACCGCCTTGCAACACATGGGGCACTCTGTTGTCTCGTGTCGTGTTGGCGTGTCAA 3481 TACTGCAGTGTGTCGCCAGCCTTGTGCACGTGGCTAATGGTAAGCGTCTCGTCATCACTT 3541 CCCATGCATGCTTGTTCTGTGTTTCCTTAGGAGTGTGGGCATCGTGGCATTTTTCTTGAC 3601 TCAACACATGGCACAAACATGTACGACCACCCGTTGATTAGCGTGGTGGTCGAAAGCGTC 3661 TATGGATGGGGAATACCTGTGGCGCACGCCATTGTGAGTCACGAGACGATCGGCGTCGTC 3721 GCACACTTTCTACGGAAAGCGGTTGCAGACCACGGTATCACTCCATCGGCCGTGATCACG 3781 GATAAGACGTTTGCCGAAGGTCGCGCCGTGGATGAGGCACTTCCCAACTCTCGCTGGCTT 3841 CTTTGCCCAGTTTCACGTGAAGCAAGCTTGGTGAGAGGTCGTGTACCGCTTGCGCGACGG 3901 CCGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCT 3961 CTGTGTGTGTGTGTGTGTGTGTGTGGCTCCGTGTATGTGTGTGTGTGTGTGTGTGGCTCC 4021 GTGTATGTGTGTGTGTGTGTGTGGCTCCGTGTGTGTGTGTGTGGCTCTGTGTGTGTGTGT 4081 GGCTCCGTGTATGTGTGTGTGTGTGTGTGTCTCCGTGTGTGCGTGTGTGCGCGCGTGCGT 4141 GTATGTTCACACATTCGTGTGCTTTACCTGCTGACGCGGCACTCTGATACTTGTCTGCAA 4201 CGGCGTTGTGGTGTGCGTGACAGGCTCAGACACTTCAGCTCCAGATCCAAGGATGGGCTC 4261 TCGCCGGTGAAGGACTTGGAGGAGCTCATGAAGTGCTCAACCATCCAAGATTTCGAGCGC 4321 GGCAAGCGACTTTTCTCGGAGCGGTACAAGGATGACCCAAAAGTGCTGGATTATTCAAGA 4381 AAACATTACTTTGAATGGGCGCACCTGTGGGCTGACTACTGCAGGCGCCCCCAAGATCCA 4441 ACAACCAACAATTATATCGAGGTCAGTGGTCATACCCAGGCCCACGCTCACACACACACA 4501 CACACACACGCACGCACGCACACACGCACACACACACACACACACACACGCACACGCACC 4561 CAGAGATATGCACGCATTCACCTGAAGAACCACACCCTTACGTGCTCTTCGCTGTCCGTT 4621 ACCTCGTGGCACATGCCTGGTTGTTTAATCATTGTGCTCCGATGGGCGCAGTCCTTTCAC 4681 CGCGTTCTCAAGGAACACCTTGACAGGAAATCGGGGCGTGCTGACTACCTGCTGCGCCGC 4741 TTGCTCTCATTCGCGGAGGAGCAAAGACAGAAGGTTCTACACGCTCAAGTCAATGGAGTG 4801 GTTACGAAGGCACAACGCTGCGCGTCATCGGCACTCAGCATCGCTAAGCAAGCGGGTCCA 4861 AGTGTTGATCGCACCAGTGACTTGTCGTTCACAGTGTCATTCCCTGACAAGGACCCAAAG 4921 GCTGTCACCATGAGAGCTGCGTTTACGTGCGAGTTCTGCTCCCGCGCTGACTGCATCCAC 4981 GTCTATGAGTGCGTGTGTCCTGCGTACAAGGGCTCTCCCCCTGTATGTAAGCACACGGCT 5041 GCGGTTTTCATTCACACGACGGGCAGCACCGACCGAGCCACATCATTTCCCGTCGCTGCC 5101 CCAACGCCAGAACACAAACCAAGCCGGCACACAGGTGAAACAGGATATCATGCACGTGTA 5161 CACGAGCGTACTCGCGCGCGTGCGCGCTGACACAGAGTGACTGAGTGACAGAGAGTGACA 5221 GAGGGTGACAGAGAGCGAGTGTGTGTGTGTGTATGTGCTAGTGAGTGAGTTGAGAGAGAA 5281 AGAGATGCGCACACGCTCGGGCAGACAGACACACACACGCACACACACACACACACACAT 5341 ATCCACTCCTGCGTACTCACACGATCATCCGTGCATTGCTTGCCGAACAGGACGAACCAA 5401 AGATCGCGTGAAACAGCTCATGCGCACGATGTCGCGGCAGCTGGACAAAATCACAGAATA 5461 CCCCTCGGGGATTGTCGTTGACCTTGAGGACATTTGCACTCTCATCGACCGCCTCACGGA 5521 CAGGATCTCCATCATTGCCGACGGGCAGAAGCGATGTCGACAAGCGGGCATCAAGCAGGA 5581 ACACCCCCGGAAAAGAGTGAAGACACTGGCCCCGTCGAGACTGCGGCTGTTCCCTGTGCG 5641 CGGCCGCAGGGGAGGCAAGAAGGCGGCAAGCACTCGGGAGGGCGCGAGGAAACCGCTGTT 5701 TCGTACGTGCACTCGCATGTATGTGCTCTGTGTATGCGTGATGCGGTCGTGCATGCGTGA 5761 TGTACCGCGTGGATGACGTGCAAGACACACCAACCAACAATCTCATCGGCGACCGTACAT 5821 TCTGCATACATACAGATGATGCGTGGCAACCGAAGTCGGAGTCAAATGACGCGGAGCCCG 5881 CAGGTACCCCCCCCCCACACACACACACACACACGCACACGCACACACACACACACACAC 5941 ACACACACACGCACACACACATGTCCTGACGTTGCTTCTTCCGCTTGTCACTCGCAACCT 6001 CAAGTGCAAGGTGCCCAGCGAACGGAGCCAGTTTTCAAGGAACAGCAGCTCCAACCTCGC 6061 GGCGAGGCCTTGAGGCAGCGAAATGATGGTGTGTAGCTTGCCCACTTTGCCACATGTACC 6121 TTGCCTACTTCTCCAGCGCGTTGTTCAGGTGGATCAACGAACACTCATCGTCCAACCTGT 6181 TGGGGTGTGTTTCTACGACCAGGTGCGCCACTCGCTGTCTCCCTTCTGCAGTCACTGATG 6241 GCACCCACGAGCAGCAAGCCCTCAAAACATCAAGCAGATGAGCAGGAACCAGAGAACAAA 6301 CAACAACAACAACAGGTGCCTCAACAACAACAACAAGAGGTGCCTCAACAACAACAACAA 6361 GAGGTGCCTCAACAACAACAACAAGAGGCGCCTCAACAACAACAACAACAACAGCAACAA 6421 CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA 6481 CAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGGTGCCACAACAACAACAACAA 6541 CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA 6601 CAACAACAACAACAACAACAACAACAACAACCACAGGTGCCTCAACAACAACAACAACAA 6661 CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA 6721 CAACAACCACAGGTGCCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAA 6781 CAACAACAGCAGCAGCAGCAGCAGCAGCAGCAAGCCCAAGAGGAATGTCAATATCAGGCA 6841 CCAAACCCGCGCAACCGCGAGAAGATGGTGGGTGGCCGAAGCTCGGTTGCCTCTGTCGAC 6901 ATGACTCCGACCAAACCACGACCTGGTTCGTTGAGCTGTTGTTCATGTGAATGAACATGC 6961 GCACCTGTGTGTGTGTGTGTGCATATGTGTGTGTTTGTTTCTATGTATTTTTGCTTGCTT 7021 GCTTGTTTGTTCGTTCACTTATCCGTGGGCCTGCATGCTAATGCCAGTGTCGTGCGGATG 7081 CGTTGTTTCTCTGCTCATGCACGACCCTCACATAACACCACTGGCCACCGGTTGTGCAGG 7141 CGATCTGCCCAGTCCTTTCAGCCAAGCAAGCTGACCAGGCTCATCACAGCGTAGGAGGAC 7201 ATCTCAATTGTTCGTCAAGACCTCTGTAAGACTGCGCACATGGTGCGCCATATGGGGTGG 7261 TGCGTGTGTGGTGTGTTTGCGGTTACGCCCTGCTCACTGTGGCGTGTTCTGCTGCACATG 7321 AATGACACTAGGAGGGGCCTACGTGTGTGGGGCGCATCCTGTGTTAGTTTGAGGTGCGTA 7381 GCATTGCCAGTTTTGGTGTTGGACCGCCCACACCGGGGTGCACGCGCGCTTGCACATGGC 7441 GCGCCATATTGGGTGGTGCGTGTGTGGTGTGTTTGCAGTTACGCCCTGCTCACTGTGACG 7501 TGTTCTGCTGCACATGAATGACACTAGGAGGGACCTACGTGTGTGGGGCGCATCCTGTGT 7561 TAGTTTGAGGTGCGTAGCATTGCCAGTTTTGGTGTTAGACCGCCCACACCGGGGTGCACG 7621 CGCGCTTGCACATGGCGCGCCATATTGGGTGGTGCGTGTGTGGTGTGTTTGCGGTTACAC 7681 CCTGCTCACTGTAACGTGTTCTGCTGCACACGAATGACACTAGGAGGGACCTGCGTGTGT 7741 GGGGCGCATCCTGTGTTAGTTTGAGGTGCGTAGCATTGCCAGTTTTGGTGTTGGACCGCC 7801 CACACCGGGGTGCACGCATGCTTGCACATGGTGCGCCATATGGGGTGGTGCGTGTGTGGT 7861 GTGTTTGCGGTTACACCCCGCTCACTGTGACGTGTTCTGCTGCATATGAATGACACTAGG 7921 AGGGACCTGCGCGTGTGGGGCGCATCCTGTGTTAGTCTGAGGATGCACGCGTCTTTGTAG 7981 TTCGAGACATGGTTGTTGATGTGGTTGAATAGCAATATAGAAGATCTCGTGCAGGGAATG 8041 TCACACCAAATAAAACCCGCACAGGCGGTTAACAGGGCCCTATTAAGTCACGCACACGCA 8101 CACACACACGGACGCATACTTTCTCTCTCTCTCTCTCTCTCCCTCTCTCTTTCTCTCTGT 8161 CTCCGTCTGGCCGGGTTGTTGGTTGGTTTACATGAGTTAGAGGTGTCTGCTCAGACACTT 8221 TGGGCTTTGGTTGTTTTGCGGTGTGGCCGACTGGGAAAGGAGCTGATTTGCCAATTGCAG 8281 GTGCAATTACAGCCGAATGTGGGCCACCGGGAATGCAGACGCACCC Features 1-28 5' ITR 29-195 5' UTR 196-6278 Predicted Transposase 257-415 Predicted intron 458-1135 Predicted intron 1199-1567 Predicted intron 1631-1813 Predicted intron 2059-2190 Predicted intron 2291-2378 Predicted intron 2848-3098 Predicted intron 3364-3573 Predicted intron 3850-4692 Predicted intron 5135-5390 Predicted intron 5703-5835 Predicted intron 5884-6004 Predicted intron 6089-6231 Predicted intron 6279-8296 3' UTR 8297-8326 3' ITR Conceptual Protein Sequence >Predicted Transposase 1 MASIHTTPDQISPEDLVDTLELLPLPDESANDTHGTGSEVTAATTQQHQATVATPGTGSE 61 VTAATTQQHQAHVVTPDTKPFECPASGCSARFTRFDSAKRHICTSHKGADVADLLQTFKN 121 NSNEVAIVYPCPENTCTQTFSSRQALSRHQLRDHGKQKARGHFQCRSGCADAAFCTAKEL 181 MQHVITDHDASCCVVRYYASWSRFESCIAAAECDDFALVDYVKRDHTCCFPPKAAAWGLE 241 HVQVEEEFVRTCSRHGNERPYQGTIRAHRAKAPKPVGCCPAMMWGQVCKGGRVRVVMFNY 301 HSHSKDLRHLQLPGVFRAEVARLLRVSASYTAIYHQVKATFSSHPRISIFKQAHVYNVAQ 361 EYEPGRFDADDAASVWYAAQIYNKEAGEHTPVITALKLQGQEAFEFGGPEQRASGDFPQE 421 SLFILVQTEWQRRVLKCGHRGIFLDSTHGTNMYDHPLISVVVESVYGWGIPVAHAIVSHE 481 TIGVVAHFLRKAVADHGITPSAVITDKTFAEGRAVDEALPNSRWLLCPEHLDRKSGRADY 541 LLRRLLSFAEEQRQKVLHAQVNGVVTKAQRCASSALSIAKQAGPSVDRTSDLSFTVSFPD 601 KDPKAVTMRAAFTCEFCSRADCIHVYECVCPAYKGSPPVCKHTAAVFIHTTGSTDRATSF 661 PVAAPTPEHKPSRHTGRTKDRVKQLMRTMSRQLDKITEYPSGIVVDLEDICTLIDRLTDR 721 ISIIADGQKRCRQAGIKQEHPRKRVKTLAPSRLRLFPVRGRRGGKKAASTREGARKPLFH 781 DAWQPKSESNDAEPAVQGAQRTEPVFKEQQLQPRGEALRQRNDVTDGTHEQQALKTSSR >Salpingoeca rosetta Sola1 element (SrosS) [RepBase Type:DNA/Sola-1; Repbase Reference Repeat:Sola1-1_MonBre] 1 GGGTATCGCTCAATTATAATGTCCTCAGTGGCTTTTCGTTGTGATGTGAGCTGATGGAAG 61 CGTCTAGGGCGTCTTTGAGCGCTCTTTCCGGTGGTGTTGGTTTCGTTCGGATCTGACAAC 121 GAGAAGTCAGTCAACGAGCGCTTGCAAAATTACCACCCAAGCCAGAATCGCAATCCGCCA 181 AAATCTCAAACTCGTCGGGAAAGTGGTGAAAATCGACAAACAAAGTTGGGAGGTTGTTTT 241 TTGAGCGGCACACCACCACGACGATGAATGTTGATGGCGACTTTGAGGGTGAGGAGGAGG 301 TGTTTGATGATGGTGCTGCTCGGGAAGAAGTGGCAACAGCACTGCTGATGCTGATGCAGA 361 ATGATGCGGAAGAGCGCACGGTGTCGCCCCTCAGCACTGCAAGCGCCGAGTGCAACGAAG 421 CTTTGCGCACTGGGAACGATTTCATTAACAAGGAGTACTTTGGCGGGTGCGTCGCTTGCT 481 TTCTTGTCAGCTTGCAGCAGTGATGTGGTGGTGGTGTATGCGAACGCTCTGGCGAGCATG 541 AGTACTCATCACTCTGCCCTCTCCTTGCGCCTGTATTCTTTGCAGACCTCTTCGCATGAC 601 ATCCCTCCTTGAGGGCGACAACGCTGGTGACGATGACGATGACGACGACGACGACGACGA 661 CGACGATGATGATGATGATGGTGGTGATGATGTTCAAGACACACCACTCTCTCCATCATT 721 GTCGCTCCTGTGTGAGGAAGAGGTGCCGCCAACGCCAGTGAACGTCTCATCTCCGCGCCT 781 TCCACCGTCTTCGCCCGCCGTGTCACAGGAGGTGCATGGGACAGCCGTGGCACTTCCGGA 841 CACAAGCGGCTCGCAGCCAAGACCACCGCCGCTGCCACTGCCAGCGAGTCTAATGCACCC 901 ACGTGCTCCAGTGCCGGCTTCAGCTGCCCCTCCTCTCCCGATCCCTATTCAATTCCAACC 961 ACACCTGTCGCGACTGCTTAGCAGCCCGCCACCAAAGCGCCCTCGACAACAACAGCAGCA 1021 GCAGCAGCAGCAGCAACAGCGAAACGATGCGCCGCCGATCGACCTTGTTGCCAACGAGCA 1081 CTATTGCTCGACTGCTCTTCTGCCACAAGTGGCCGAGGTCGTTGACACACTCATCCCACA 1141 ACCACCAGCAACCGCCACCAAGTCGCAGCAGTCAAAGCCATGCGGAATACGCCAGTGCAA 1201 GTGTGCTGCTGGCAAGGCTGGCAAGTGCTGGAAGACCTTTGGCGCGGGCACACTTGAGAG 1261 TCTCCGATGCCAGGTGTTCGAACTCAGCCAGCATGACCGCCGTCGCATGGTGCAGTCCAT 1321 CGTCTCCACGAGCCTGAAGGTGCCGCCATGGCAGGTTGGCAATGGGCGGGATGATGCTCC 1381 GTGCGAGGACGGGTGGCAAGAGCACGTGCCGGACCGGAGCAGACTCACTATCGACTACCG 1441 CGTCCTGGGCGTGCCGCTGTGCAGAGAAGGCTTCCGGAACGTGCTTGGGATTGGAGGTCG 1501 AGTCATCAAGGAGGCAACCCGAGACGTAAAGGCGGGTGTCATTGTGCCGCGGCCATCGCT 1561 TCACGGACAACATCTCAAGGGTCGTGGGGTGTTCACTGCCCAACGCGTTGTTCACTTCAT 1621 CAAGTGGGTGGCCTCGATGCACGGGCTGCCGAATCCTGCGGGACGCGGGGCCAAAGTACT 1681 GCTGCCCATCTCCTTGTCGAGGGCACAACTCCACAAACGCTACCAGTCCGCCACGGGTAC 1741 GGTATGATCGTGTGCGTGTGTCTGTGTGTGCATGCTTGCCAGTCGCTGTTGCTCCGCTGG 1801 TGCTTACAGACCCTTGTCGTGTGCATGCTGGCTGCAACAGGTGATCAGACGTCGCTGGCC 1861 ACGTTCAAGCGCGTGTGGGCAAAATATCTCAAGCACATCGGACACGCCAAGACCCGCACG 1921 GATGTGTGTGACACGTGCTCGAAGCTGAAGAGCGGCTAGATGTGGGAGTTCCTTATTCAG 1981 CACCTGAAGATGGCAAAGGCCGAGCGCAAGTTTATGAACGATTGGACTGAGTTTGGTGGG 2041 AAGGCAGATCACCACGTCATCAGCTTCGACATGGCAGGCACAACTCGCCTCCCTCACTTC 2101 CTGGAGCAAAGAAAGGCAAGCTGGGGTGATGTGTGAAAGGGGGGTGAGGATGAGGGATAG 2161 GGGTACTGCTGTGAGCTCGGTTTGTTCTCGACCTTGTCTCACCCTGTTGCGCACGTTGTG 2221 TTCACAATGCCAGGCGTTCTATTACGAGAGCGGTTTGAAGGTGGAGGCGTTTGGTGTGAC 2281 AGACCTGGCGCGGCGCACCCAAATGAATTACGTCTGGCACGAGCAAGACTCGCCGAAGGT 2341 TCGCGGCGCCAACCTCATTGTGTCCCTCGTCTATCACCGCCTGACATCGATTGGCAGGCG 2401 TGACGTCCTCTACGCGATGGCCGACAACTGCGGCGCACAAAACAAGAACTGGACGTTCTT 2461 GTTCTTCTTCGCTTCATACGCGCACGTGTTCAAGTGCTCGGTGTACTATCATTTTCTCCT 2521 TCAGGGCCACACGAAGGGCCTGCACGATGCCTTCTTTGGCCTCGTCAAGCGAAAGCTCAA 2581 GACGGAGGACGTGTTCACGCCTACACAGTTTATGGACATCGTCGAGCGCTCTTCTGTGGC 2641 CAACGCCGTGACCAACGCGGCATCAGTCCCCATCTACAACCACACCGCACGCCTTGGCCT 2701 CCTCTTTTGTCAGCAGAAGCAGCTCAAACCAACCAAGTACAAGCACTTCTTCTTCGACAA 2761 GGACAGACTGGGTGTTGTTCGCTACCGCGCATCAACTTCAGACGAATGGGCGGAAGTGAA 2821 TCTGCTTCGGCCTGGCGTTGGGCCAGAGCACATACACGCGGGCATCTTCACTGATGGTGA 2881 GCGTGTTCCCACCATCACCCTCTCCGCCAAGCGTCACGAGCAGCTGCGAAACATCAAAGA 2941 GAACTTCTTTCACGGCGTGGAGCATCTAAAGGACCACTACTACAGAGAACAGCCATGATT 3001 GTGTGTATCTCTTCGCCTGCACTGTGCATCTCTGAGCTCATCTCATGCCTGTTTGTGGGG 3061 GTGATTTTGTGCGAAGGTTGTTGCGGTCAGTAAAACAGTCACCCACCACCACACACACAT 3121 CGCACGAAGGTGATTTTTGGCTCATTGGAGAGCTCTCGAAGAGCTCTTTTTTTGGGGTTT 3181 TGGCGTCTCTGAAGCCCCACACAACCCTTTGATGGCTTTTTCTCGTGTCCCATTTTTTGC 3241 CACTGAGGACATTATAATTGAGCGATACCC Features 1-32 5' ITR 33-263 5' UTR 264-2995 Predicted Transposase 467-585 Predicted intron 1742-2233 Predicted intron 2996-3239 3' UTR 3240-3270 3' ITR Conceptual Protein Sequence >Predicted Transposase 1 MNVDGDFEGEEEVFDDGAAREEVATALLMLMQNDAEERTVSPLSTASAECNEALRTGNDF 61 INKEYFGGPLRMTSLLEGDNAGDDDDDDDDDDDDDDDDDGGDDVQDTPLSPSLSLLCEEE 121 VPPTPVNVSSPRLPPSSPAVSQEVHGTAVALPDTSGSQPRPPPLPLPASLMHPRAPVPAS 181 AAPPLPIPIQFQPHLSRLLSSPPPKRPRQQQQQQQQQQQRNDAPPIDLVANEHYCSTALL 241 PQVAEVVDTLIPQPPATATKSQQSKPCGIRQCKCAAGKAGKCWKTFGAGTLESLRCQVFE 301 LSQHDRRRMVQSIVSTSLKVPPWQVGNGRDDAPCEDGWQEHVPDRSRLTIDYRVLGVPLC 361 REGFRNVLGIGGRVIKEATRDVKAGVIVPRPSLHGQHLKGRGVFTAQRVVHFIKWVASMH 421 GLPNPAGRGAKVLLPISLSRAQLHKRYQSATGTTLVVCMLAATGDQTSLATFKRVWAKYL 481 KHIGHAKTRTDAFYYESGLKVEAFGVTDLARRTQMNYVWHEQDSPKVRGANLIVSLVYHR 541 LTSIGRRDVLYAMADNCGAQNKNWTFLFFFASYAHVFKCSVYYHFLLQGHTKGLHDAFFG 601 LVKRKLKTEDVFTPTQFMDIVERSSVANAVTNAASVPIYNHTARLGLLFCQQKQLKPTKY 661 KHFFFDKDRLGVVRYRASTSDEWAEVNLLRPGVGPEHIHAGIFTDGERVPTITLSAKRHE 721 QLRNIKENFFHGVEHLKDHYYREQP >Salpingoeca rosetta Tigger Element-1 (SrosTig1) [RepBase Type:DNA/TcMar-Pogo; Repbase Reference Repeat:Mariner-37_CCri] 1 CAGGTCACGCATGGATATAGTGACTATTTGGTTCCCTGAATTTGGGGTCACTATAAAATC 61 TTTGTGTCCGGAAGTCACTTTAGCCCAATGACGGTTGCCAATTGCAATGTGCAAATTGCA 121 AACACTGGCGCCATGTCCACCGCCAAGAAACGAGTGGCTCTGACCACAGCGGAGAAGGCA 181 GCAGTGGTGCATGAGAAGGGCAGAGATGCATCGCTGACTCGAGAGCAACTCATCGAGTTC 241 TGCAGTGCAAAGTTTGGCAAGCGTCCGTCGCCAGCATGCATCACAAACATCCTCAAGGAT 301 CCAAAACGCTGGGAGGAAGCAGCAAGTGATCCTTACACAGCAAAGCGTGCCAAGCTTCGA 361 CCGAGCCCAGTTGCAGGTCTCGAAGCAGCTTTGGCCGCCTGGGTTGAGCAGAAGCAGGCT 421 CAAAACTTCCCGCTGACAGACGAAACACTGCTGGCAAAAGCGCATGCCATTGGGCAGCAC 481 ATATCTCTACCAGACCATTTCAACTTCAGCCACTCATGGCTGCTTCGATTCAAACATCGT 541 CATGGCATTTGTAAGCGCAAGCTATACGGAGAGGCGGCAAGCGCGGACATGGATGGCGTT 601 GCGCTTGCACGTGAGGCGCTGCCCAGACTCCTCGAGCACGTTTCCCGTGATGACCTGTAC 661 AACTTGGACGAGACAGCTCTGTATTACAGACAGCTCCCAACCCGCACTCTTGCATCTCAC 721 CAACGTGCGGGAGCGGTCACGAACAAGCAGCGACTGACCGTTGCTCTGTGCTGCAATGCT 781 TCTGGTACTGACAAGCTACCGTTGTACGTGATTGGCAAGGCAGCGCGCCCTCGCTGTTTT 841 CCAAAAGGCTGGCGGCCATTGCGTGATTCCGGTGTTCACTACGACTACAACAGCAGCGCT 901 TGGATGACCTCCACAATCTTCAACAACTTCCTCAAAGACTTCACCCACCATGTCCAGCGG 961 CCTGTGTGGCTGATCGTTGACAATGCTCGCTCCCACAGCATTGACGATGGCACACCAGGC 1021 ACATGGTTTGGCTTGAAGGGTGTCAGTATCGGAACGGTGAACGTGGTCTTCCTTCCGCCC 1081 AACACGACGTCCCATGTGCAGCCCTTGGATGCTGGCATCATTCGCTCCTTCAAAGCGAAA 1141 TACCGAGTGCGTCACCTTACCTGGCTGTCAAAGGAGCTCGAGGACACCACCGCCACGGCT 1201 GCACGGCTGCATGTGCCCCTCGACGTTGCGTTTGACTGGTGCCAGAATGCTTGGAAGGAC 1261 GTCAGTGTTGACACCATCCGCCATTGCTGGGATCACGCCGACATTCTCCCTGGAGACGAC 1321 CACATCGACGAGCTGAACGCACTGCTAAAACCGCTCGCTTTTGACTCGCGCTTCGGCAAG 1381 GAGACCCCAACTGCCGAGGCTTTGCTGAGCTTACCGGTGGAAAATGTTACCGAGGTACCA 1441 TATGAGCTTGGTGATCTGCAAGCCATGGCTGATCACCTTGAGGGTTCTGACGGACGGGAG 1501 GCTGGGCATGTCGGCACGTGTGATGTGGGTGATGACGGGGACCACAACAGTGGTATGGGT 1561 GGTGTGGGTGGAATCGACGACAACGACGAAGGGGACGATGGGGAGGGTGATGTGATTTGT 1621 CTTGACGACGTGCCATCATCGTCACAGCGCCCGGCAGTCCCGAAAGTGAACGCACCCCCA 1681 CCAACGCTTAAGCAAGCAAGAGAGGCGGCCACTCTACTTCGCCGCTTCATTACATTCCAC 1741 CCGCACAAGCTCGCCAACTATCGTGACTCTTTGGTTTCCCTTCGTTCGGCCCTTGACTTT 1801 ATTGTGATGCCTCAAACACAGCTTACTCTTCATGGGTTTCTCACTGTTGACCCTTCTGTC 1861 GATGGGTCTGCACAGTAAACCGTCTTCCTGGCCGTGTGTACACACACACACACACACACA 1921 CACACACACACACACACACACACACACACACACACACACACACACACACGATTCCACACA 1981 CACACACACACAGAGAGAGCACCGGTCACTACTCGAGTCCAAAATCATCACTATAAACAT 2041 GTAAGTGACTGTTTCCTGAAGTTAGGGTCACTTTAGCTCGTTTGCCACTTCACCCGACGG 2101 CACTATAACCATGCGTGACCTG Features 1-22 5' ITR 23-87 5' UTR 88-1875 Predicted Transposase 1876-2100 3' UTR 2101-2122 3' ITR Conceptual Protein Sequence >Predicted Transposase 1 MTVANCNVQIANTGAMSTAKKRVALTTAEKAAVVHEKGRDASLTREQLIEFCSAKFGKRP 61 SPACITNILKDPKRWEEAASDPYTAKRAKLRPSPVAGLEAALAAWVEQKQAQNFPLTDET 121 LLAKAHAIGQHISLPDHFNFSHSWLLRFKHRHGICKRKLYGEAASADMDGVALAREALPR 181 LLEHVSRDDLYNLDETALYYRQLPTRTLASHQRAGAVTNKQRLTVALCCNASGTDKLPLY 241 VIGKAARPRCFPKGWRPLRDSGVHYDYNSSAWMTSTIFNNFLKDFTHHVQRPVWLIVDNA 301 RSHSIDDGTPGTWFGLKGVSIGTVNVVFLPPNTTSHVQPLDAGIIRSFKAKYRVRHLTWL 361 SKELEDTTATAARLHVPLDVAFDWCQNAWKDVSVDTIRHCWDHADILPGDDHIDELNALL 421 KPLAFDSRFGKETPTAEALLSLPVENVTEVPYELGDLQAMADHLEGSDGREAGHVGTCDV 481 GDDGDHNSGMGGVGGIDDNDEGDDGEGDVICLDDVPSSSQRPAVPKVNAPPPTLKQAREA 541 ATLLRRFITFHPHKLANYRDSLVSLRSALDFIVMPQTQLTLHGFLTVDPSVDGSAQ >Salpingoeca rosetta Tigger Element-2 (SrosTig2) [RepBase Type:DNA/TcMar-Tigge; Repbase Reference Repeat:Mariner-132_CCr] 1 CAGGCAGTTCTCTATATTGGCAAGAAATACATTGGAAATTTCTCCACATTGGCAACAAAT 61 CTCCGCGCCACACTCTCGCTCAAAACTGTCGCGCCAAAAACCACAACCATTGACACGCAC 121 ACGCACGCACACGCACACACACACACGCACACACACGCACACACACACCTACACACGCAC 181 GCACGCACACGAACGAACGACATCAGCAGCTTGAAGGCGTCGCTTAAGGCCGCAGCAACG 241 GGCGTGAACAGCAACACACGATTATGACTAAGATGAAGACACGGATGGAGAAGTACAACA 301 TCGCCATGGAAGCGATTGCGGGCCGCACCAAGCAGAAGCACGTTGCGGAGAAGCATGGTG 361 TGACGGCAGCAACACTGAGCAAGTGGGTGAAGAAGGTCAAGGCAGGAGAGCTACGAGGGG 421 ATGAGCGCGACGCATCATGCAAGAAGGCACGACCGCTCCAGTTTGGCGAGATTGAAGATC 481 GCTTGGTGCAGTACATCAAGCTGCGCGAGCGCAAGTACCTGGTGGATGGCCTCGGGCTCT 541 CATGGAAGCTTGTGCAAGAGAAAGCCCTCAAGTTTGCTGCAGACATGAAAGCAACGCATC 601 CAGACAAGGCAGCAACACTTGACAACTTTCGCGCAAGCCCTGGCTGGTTTCAGGGCGTGC 661 GCAAGCGACACAACATCAAGAGCGTGCGACTACATGGAGAGGCTGGCAGTGTTGACGAAG 721 AGACAGCAGCAACGGCAATGGCAGAGTTCAAGCAAGCAGTTGCTGCTACGAGCATCACCA 781 ACCCCCAATTCGTCTTCAACGCAGATGAAACTGGTCTCTTCTACCAGACGTTACCTTCAA 841 GACTCTACGTGTCTCGATCGGAGCGCAGTGTTCGCGGAGTGAAGCAGATGGCGGCAAAAG 901 CACGGCTGACGATCATGACGGCAACATCAGCAGCGGGGGAGAAAGTGCCACTCTTCTCTG 961 TCGGAAAGAGCCGGAGACCTATGTGCCTTCGTGACGACTTCCCACCAGTGCGGTACACGT 1021 CTCAAGCATCAGCCTGGTTCGACACTGACATGGCCAATTACTACGTGCGTTTCTTTCTCA 1081 AGTGGAAGCGTTCACGCTATGGAGACGAGCCTGTTGTTCTCATCTGGGACAATTGCCCGG 1141 CACACAAAAACGTCACCAACCCTGCGCCGAAGGAGCTGCACCTGTTGTTCTTGCCCCCAA 1201 ACCTAACGTCAAAACACCAGCCCATGGATATGGGCTTGATATCGGCCGTGAAAATGCGAT 1261 ACAAGGCATACGTGCTGCAGCAGCTCCTCGCATACTACGACGACGGGCAGCAGACACCAC 1321 TACCGAAGAGCCGTGGCTTGCGTGGTCTTGCCCATGGAGCGCCACCAAACATTCGAGACG 1381 CGTTGACGATCTTGAAACGAGTGTGGGATGAGGTCAAGCCTGAGTCAGTGGTGCGGTGCT 1441 GGATGAAGGCAGCTTGCCTACCCGAAAGCTTTTTCCCACAGCAGCATACACAGCAACAGC 1501 AGCGAGTGACTTCGGATGAGATGCTGACAGAACGGAGCAGTGAAGAGGAAGGGCAGGAAG 1561 GGGAGGGCGGACAGCTGGTACAAGATGGGCTCGGAGCGGAGAATGAACAGTACGATGAGG 1621 CGGAACAGAGAAGGACGGAAGAGCAGGAGGCGATTGATGAAATAAGTCACCTCGCTCAAT 1681 CACTGCAAGCCAGAGTTTCAATTGCAACTGATGCGCGTGTTGAGGTTGTTGCGGAGGGAA 1741 CGGAGGAGTGGGCGACGTCAGATGATGACCCTGATATCGTGAATGCAATGATTGATTTGG 1801 AGCTTGAGCGCATAGAAAGCAACAGCAGCACAACCACCACAAGCAGCGACGACGACGGGA 1861 GTGACTCTGACCAAGACGAAGCGACACCGACCGCACCGACACGTGCGGAAGTTTACAATG 1921 CCCTGACAGTTCTCAACAGACTGTGTGAATCCTCTGCATCTCTCCGTCCCACATGTACAC 1981 TTGTGTCTCGTGTTCGCAGCGACGTTGATGCCTTCTTTATGTCCAAGACGCAAAAGCAAC 2041 CCACACTGCACTCATTCTTTGGTCCACACACACAATAAACACGCTCATTCCACACCGGCA 2101 ACTTTCTCTACATTGGAAACTTTTGGGCTTGCCACACCTAGTTGCCAATATAGAGAACTG 2161 CCTG Features 1-23 5' ITR 24-263 5' UTR 264-2075 Predicted Transposase 2076-2141 3' UTR 2142-2164 3' ITR Conceptual Protein Sequence >Predicted Transposase 1 MTKMKTRMEKYNIAMEAIAGRTKQKHVAEKHGVTAATLSKWVKKVKAGELRGDERDASCK 61 KARPLQFGEIEDRLVQYIKLRERKYLVDGLGLSWKLVQEKALKFAADMKATHPDKAATLD 121 NFRASPGWFQGVRKRHNIKSVRLHGEAGSVDEETAATAMAEFKQAVAATSITNPQFVFNA 181 DETGLFYQTLPSRLYVSRSERSVRGVKQMAAKARLTIMTATSAAGEKVPLFSVGKSRRPM 241 CLRDDFPPVRYTSQASAWFDTDMANYYVRFFLKWKRSRYGDEPVVLIWDNCPAHKNVTNP 301 APKELHLLFLPPNLTSKHQPMDMGLISAVKMRYKAYVLQQLLAYYDDGQQTPLPKSRGLR 361 GLAHGAPPNIRDALTILKRVWDEVKPESVVRCWMKAACLPESFFPQQHTQQQQRVTSDEM 421 LTERSSEEEGQEGEGGQLVQDGLGAENEQYDEAEQRRTEEQEAIDEISHLAQSLQARVSI 481 ATDARVEVVAEGTEEWATSDDDPDIVNAMIDLELERIESNSSTTTTSSDDDGSDSDQDEA 541 TPTAPTRAEVYNALTVLNRLCESSASLRPTCTLVSRVRSDVDAFFMSKTQKQPTLHSFFG 601 PHTQ >Salpingoeca rosetta Tc1/mariner element (SrosTm) [RepBase Type:DNA/TcMar-m44; Repbase Reference Repeat:Mariner-21_CGi_] 1 ACAGAGGATGACATCAGTGAGCGGAAAAAATAAGTTTTCATCACCGGCACACATTCAAAA 61 CCACCCGAAATATGCGTCAATCGCTTCCATTGTCCGTTGGCTGTCCCACGCACAACAGAG 121 AACGAAGACAGCAAACCTCAGAGCGCAAGCACAGAACCATCTTTTCCTGTTACCTCCAGG 181 ATTGCCGATTATTCACATTGATGCCAACGACTTTCTGCATCCAAGATGGCGCAGCGCAGA 241 TCGGCCACCGCAGCAGGCAGCACTGACGGAACACCGCCGTGTGTCAAGAAGAAAGAAGGC 301 CGATTGTACGCCGGGAGCCTTGACAATGAGGAGTACGACGCCTTCAAGAAGTGGCTCAAG 361 AAGCAGCGCAAGGAAAACTCCAGGACGCTGACGGTGGACGCAAAGCTGGACATCGTCGCC 421 GTGCAGGCGTACTTTCGCCATGAGAAGTTTGTCCACGCGAACAAGTCAGGGAGGCCCAAG 481 CAGTATCGGTTCACGGCACTCGCAAAGAACGTCCTTCAGCGCAGCACAGACGTCTGTCAA 541 CAAGCATGGAAGGACTACGAGCGCGCGCAAGCGGTGTCAGTCGCAGACAACGACGGGCCA 601 CGCGGGACCAAGACGACGAAGTTCAAGCGCACTGAGGCATTGCGTGTGAAGCTGCAGAAC 661 TGGTTGTACGAGCGCACTGTCAAGGGCAACCGAACTGTGGCAAAGGACGTGCTCGGCTTC 721 TTCTGCTCCTCCGGTGTGCTGCCGATGTACTCTGATCCCACTTCGAAAGCGAACGCCCTG 781 AGAGCTGTGCAACGATACCTGGAGTCACTTGGCTACGAGAGAGGTCAGCGAGGCGGTTGC 841 ACCACCTACATGGAGAAGGAGGAGGTGCTGATCAAACGAGACGCGTACATCACCCAGATG 901 ATCAAGGCCCGACAGCAGCGGCGACGCATTGTCTACCTCGACGAGAGCTACATACACCAC 961 CACTACCGCCGGCATGATGAGTCGCTGTACGACCCCGGTGATAACCGCCTGCTCCCCAAG 1021 CAAAAGCACAAAGGCCGGCGCTTCTGTTTCATCGCGGCAATCATCTCAAGCGACCCTGCA 1081 GTACCAGAAGCAGAGCGATCCGAGGAACATCGTGCACAGCTGTTACCCGAGACGCTGGAC 1141 ATCTTTGAGGGGGGCAAGAAGCAGAGTGGCAAGGCGCAGACCAAAGACTACCATGGCATG 1201 TTTGACAGTGCATACTTTGAGCGCTGGATGCAGACGCTGCTCGCCACGCTCGACGCCCGT 1261 GGCATCAAAAACACCATCATTGTCATGGACAACGCCAAGTACCACAAGTCACTCCCAGCG 1321 GACACGCCCAAGCAATCATGGAAGAAGGCAGCCATGGTCGAGGCCTGCACGGCGCGCGGC 1381 CTGCCAGTATCCGACACCGACACTCGGGCCTTGCTGTGGGCCAGGCTTCGCGAACACATT 1441 GCGCAGACAGTCAAGCCCGTCGTCGTGCAAATGGCAGAGGACGCTGGGCACGAGGTGCTG 1501 TGGACACCGCCGCATTACTCCGACCTTCAGCCCATCGAGATTGTTTGGGCAAACGTGAAA 1561 GGAGACGTTGGTCGACAGTACAACTACGACACAACGTTCAAGGACGTGCGCCAGCGGTTG 1621 GACGAGGCGTTTGCAACCCTGACACCGAAGACAGTTGAGGGATGCATTGCAAAAGCAGAT 1681 GCTCGGCTGGATGAGCTTTACAGGCAGATCACGAGCCTCGATGAGGTGGATGAGGAGGCA 1741 ATCGATGATGGGGTGTTCGATGACGGGCAGCGTGATGATGATGATGAGAATATGGAAGAG 1801 GTCGATGTTGTGAACGAGGACAAAGACAAGGACAGTGACGAGGACAGTGACGAGGACGAC 1861 GATGAGGGTGAACATGAAGACGAGGATTAGTGTGAGTGGTTTGCCTGTTGTGTGGTTCAT 1921 TGTGTCTTGGTGGGTGGATGTGGGGTGGGGTGCCGTAGTCAATTGTGCTGAGGAAAAGGG 1981 TGTTTTTAGCGTGTTCTCTGTGGTCGAGAACGGCGAAATAAATCGTCAAACACGTTAAAG 2041 TGATTTTCCGCTCACTGATGTCATCCTCTGT Features 1-28 5' ITR 29-225 5' UTR 226-1887 Transposase 1888-2043 3' UTR 2044-2071 3' ITR Conceptual Protein Sequence >Hypothetical Transposase 1 MAQRRSATAAGSTDGTPPCVKKKEGRLYAGSLDNEEYDAFKKWLKKQRKENSRTLTVDAK 61 LDIVAVQAYFRHEKFVHANKSGRPKQYRFTALAKNVLQRSTDVCQQAWKDYERAQAVSVA 121 DNDGPRGTKTTKFKRTEALRVKLQNWLYERTVKGNRTVAKDVLGFFCSSGVLPMYSDPTS 181 KANALRAVQRYLESLGYERGQRGGCTTYMEKEEVLIKRDAYITQMIKARQQRRRIVYLDE 241 SYIHHHYRRHDESLYDPGDNRLLPKQKHKGRRFCFIAAIISSDPAVPEAERSEEHRAQLL 301 PETLDIFEGGKKQSGKAQTKDYHGMFDSAYFERWMQTLLATLDARGIKNTIIVMDNAKYH 361 KSLPADTPKQSWKKAAMVEACTARGLPVSDTDTRALLWARLREHIAQTVKPVVVQMAEDA 421 GHEVLWTPPHYSDLQPIEIVWANVKGDVGRQYNYDTTFKDVRQRLDEAFATLTPKTVEGC 481 IAKADARLDELYRQITSLDEVDEEAIDDGVFDDGQRDDDDENMEEVDVVNEDKDKDSDED 541 SDEDDDEGEHEDED