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["Additional file 5: Fold change of known miRNAs in 8 developental points, totally 48 samples, Fold change=log2(FPKM+0.1)"]
["microRNA","SJ14F1","SJ14F2","SJ14F3","SJ14M1","SJ14M2","SJ14M3","SJ16F1","SJ16F2","SJ16F3","SJ16M1","SJ16M2","SJ16M3","SJ18F1","SJ18F2","SJ18F4","SJ18M1","SJ18M2","SJ18M4","SJ20F1","SJ20F2","SJ20F3","SJ20M1","SJ20M2","SJ20M3","SJ22F1","SJ22F2","SJ22F4","SJ22M1","SJ22M2","SJ22M4","SJ24F1","SJ24F2","SJ24F3","SJ24M1","SJ24M2","SJ24M3","SJ26F1","SJ26F2","SJ26F3","SJ26M1","SJ26M2","SJ26M3","SJ28F1","SJ28F2","SJ28F3","SJ28M1","SJ28M2","SJ28M3"]
["sja-bantam",10.4538070229,10.4538060401,10.4538308472,10.6642104345,10.9041530028,11.1429225283,10.4537905285,10.4537906706,9.9562759512,10.4538304979,10.6642015358,10.4538056553,10.9041215353,10.6641598675,10.1014842471,10.1014611096,11.1428991185,11.1429002611,11.9047899775,11.6078238758,11.142875034,12.3651884368,11.9047984438,12.3652124383,11.9047707124,11.6078139294,11.9047952349,12.3652171984,11.6078172981,10.904119623,12.3651981522,12.3651973175,12.3651961807,12.3651986673,12.3652133856,12.3652153335,13.8949186396,12.3652133383,12.365239969,11.9048070878,12.3651873415,11.1429014156,13.8948975982,13.8948980245,15.1038898414,12.3652803718,11.6078572736,11.9050268635]
["sja-let-7",9.6980486082,9.2654741369,9.265498944,9.5619597785,9.2654905367,9.2654978664,9.8215533394,10.1014439283,8.4049891041,9.2654985947,9.956274773,9.265473752,9.9562428911,9.5619092114,8.8633491061,9.0400516611,9.9562582784,9.956259421,10.1014532175,9.8215625694,9.8215450864,10.1014354384,10.1014616838,10.10145944,9.8215435056,9.9562417307,9.8215680281,11.6078350596,9.9562450994,9.8215518712,9.9562438147,9.2654591581,9.9562418431,9.8215552221,10.4538071295,10.1014623351,8.8633260455,9.0400508915,8.1248684078,9.821579881,10.1014343432,9.4045107873,7.9833612396,8.3025780812,9.6315898537,9.562002141,9.6980747416,8.589407789]
["sja-miR-10-5p",19.5150182129,19.5150172301,19.5150420372,17.3602989573,17.3602896443,17.3602969739,17.3602577327,17.3602578748,19.5150352226,17.3602977022,17.3602900587,17.3602728595,17.3602581768,17.3602483903,19.5150421793,17.360275056,17.3602735641,17.3602747067,17.360267164,17.3602669627,17.3602494797,17.3602493849,17.3602756303,17.3602733865,17.3602478989,17.3602570164,17.3602724214,17.3602781466,17.3602603851,17.3602562645,17.3602591004,17.3602582656,17.3602571288,17.3602596154,17.3602743337,17.3602762816,17.360275133,17.3602742864,17.3603009171,17.3602842743,17.3602482897,17.3602758612,17.3602540917,17.3602545179,17.360267614,17.3603413199,17.3603003605,17.36050405]
["sja-miR-10-3p",7.0137306542,6.8705521666,6.7537498977,6.4849551972,6.405947859,6.2736230451,7.5787317107,7.5787318528,6.9439343552,6.7537495484,6.7537419049,6.4849290994,7.7761656152,7.5787223683,7.2335462864,7.0137314831,7.100370608,7.2335227996,8.3025907273,8.302590526,8.3025730429,7.5787233629,7.5787496083,7.2335214793,8.4918279805,7.390719407,7.5787463994,7.776185585,7.5787343631,7.5787302424,7.7761665388,7.2335063584,7.5787311068,7.1003566593,7.0137307608,6.8705552038,6.7537269792,7.1003713303,6.6039790689,8.2200144133,7.1003453336,7.0137322883,5.3540938099,5.2440468689,7.2335157068,7.1004383638,6.6039785124,6.4851602899]
["sja-miR-124-5p",4.7611683037,4.3961936597,4.5720360362,3.5413454977,3.5156830365,3.681756583,4.9827330792,4.889536435,3.7467033861,3.9908020459,4.108389905,4.3156814623,4.8378902214,5.4033209415,4.9827735401,4.3364931854,4.2036693988,4.3156833095,4.8000403828,5.1080235145,5.4033220308,4.1521295241,4.0157007946,4.0156985508,4.9359105155,4.7201847026,4.6168570221,4.1083779928,3.9530351978,3.8557872151,2.2303958559,3.8279191601,2.7409241225,4.1315139032,4.3156829365,3.7995181014,1.4613401943,2.0048610464,2.4683368284,2.6803591176,3.3548115623,4.6168604619,0.3190777102,2.5529500547,1.4613326753,3.8558722706,3.6817599696,3.7469161992]
["sja-miR-124-3p",7.1003712711,7.1003702883,7.0137544785,7.0137553844,6.6039677961,7.013753401,7.1003547766,7.3907202655,6.1450778504,6.8705766244,7.1003871026,6.8705517818,7.2335062696,6.6807561157,6.4059564083,6.6039532079,6.8705524863,7.0137311338,8.2199973031,7.3907293534,7.5787234576,7.3907117756,7.2335237232,6.8705523087,7.1003449428,7.0137134434,7.1003694653,7.5787521245,7.100357429,7.2335043573,7.390721491,6.7537101118,6.6039352807,7.2335077083,7.5787483117,7.3907386723,5.4919209964,6.0298137256,5.4033734682,8.124851765,7.5787222676,6.7537277074,4.4396566583,5.2898652041,6.0298070532,7.2335894128,7.0137567876,4.3668821288]
["sja-miR-125a",8.2200043662,8.2200033834,8.2200281905,7.5787729353,7.1003866882,7.5787709519,9.2654586252,8.8633087873,9.4045261629,7.9834048501,7.9833972066,8.1248403502,9.8215537835,8.7353695363,9.9562829079,8.735396202,7.983380712,8.5891784457,10.9041305226,10.1014530162,10.6641609568,9.561910206,9.2654765228,9.2654742789,10.4537806947,10.9041203749,10.4538052172,9.8215737533,9.8215559918,9.9562409788,10.9041224589,10.6641697427,10.4537899246,10.6641710926,10.6641858109,10.6641877587,9.9562598473,9.8215698931,10.6642123942,10.1014703278,9.8215438964,10.9041392198,9.6980284727,10.4537873137,10.1014536675,11.9048641334,10.6642118377,11.608060963]
["sja-miR-125b",17.3602742272,17.3602732444,17.3602980515,19.5150429431,19.51503363,19.5150409597,19.5150017185,19.5150018605,17.3602912369,19.5150416879,19.5150340444,19.5150168453,19.5150021625,19.514992376,17.3602981936,19.5150190418,19.5150175498,19.5150186925,19.5150111497,19.5150109484,19.5149934654,19.5149933707,19.5150196161,19.5150173722,19.5149918846,19.5150010021,19.5150164071,19.5150221323,19.5150043708,19.5150002502,19.5150030861,19.5150022513,19.5150011146,19.5150036012,19.5150183195,19.5150202673,19.5150191187,19.5150182721,19.5150449028,19.51502826,19.5149922754,19.515019847,19.5149980774,19.5149985037,19.5150115997,19.5150853056,19.5150443463,19.5152480357]
["sja-miR-133",4.3364923565,3.7466853936,3.3548613241,3.4672646201,2.8582720739,3.3548602466,4.5467606222,4.1724731344,3.3548545095,3.4672633649,3.2234710061,3.4916555775,4.7408144621,4.837880435,3.5156915858,4.2945695759,4.2470310528,4.040197514,5.1764170488,5.0416285086,4.8639358791,5.0416109308,4.837907675,4.2470308751,5.448286737,4.5945925609,3.6507201793,4.476847584,4.8895389452,4.172471524,4.4768285378,3.5930001458,3.9142891451,4.5467625049,4.2255138991,4.2470337703,2.7109641314,3.5665257837,3.3548641897,4.4768537117,4.5719862743,4.8895544214,2.437472411,1.9765376281,3.4672332767,2.9826294129,4.2036961953,0.2857192759]
["sja-miR-190-5p",6.2736002983,6.2735993155,6.2736241226,6.2736250285,6.0298290835,6.4059551887,6.2735838039,6.4849141147,6.273617308,6.2736237733,6.6039682106,6.4059310742,6.753710023,6.8705273125,6.8705771158,6.4849312959,6.7537254103,6.7537265529,6.8705460863,6.7537188089,6.7537013259,6.8705283072,7.1003726742,6.7537252327,6.8705268211,6.1450436298,6.6039505733,7.2335262394,7.3907227758,7.3907186551,7.0137155274,6.6039364174,6.8705360511,7.7761670539,7.3907367244,7.5787502596,6.6039532849,6.7537261326,6.0298403563,8.4049821415,8.4918283712,7.2335239541,5.4033266428,7.2335026108,7.7761750524,7.3908037106,7.1003974044,5.5880851044]
["sja-miR-190-3p",9.9562589415,9.9562579587,10.101484105,9.0400755624,9.821585251,9.8215925806,9.6980321138,9.5619186959,9.561952058,10.1014837557,9.6980644398,9.9562575738,8.8633090893,9.821543997,9.6980725747,10.4538078518,9.6980479451,9.6980490878,9.0400437691,9.5619277838,8.8633003922,9.404484311,9.5619364514,9.8215689932,9.2654487914,9.4044919424,8.7353935674,9.9562628609,8.4918404666,9.0400328695,8.4049569676,8.8633091781,8.4049549961,9.4044945415,9.2654752262,9.6980506627,7.3907375237,7.0137307134,8.2200310561,7.1003813182,7.3907106803,8.8633267738,8.1248215824,8.219984657,6.6039457658,8.4050391872,8.8633512731,10.1016901035]
["sja-miR-1",4.1724894867,3.5665247417,4.3365161808,4.1725142169,3.7733584347,4.3365151033,4.3364758621,4.3364760042,3.7995330567,2.9174677186,4.108389905,3.7995146794,5.1080147286,4.2036442251,4.4181234948,3.4104644613,4.3364916934,4.1315289945,5.7154702307,5.354106681,5.2440418306,5.5878304394,4.9595344766,4.6952795273,5.3540876171,4.1521371555,4.1881622041,5.653080941,5.1080169369,3.9142882807,4.7201867866,4.4180835668,4.4396596955,5.1764095002,4.6699208484,5.3541159998,3.1278089532,3.5156676786,3.1966104927,5.1764341591,5.1763981745,3.990780205,2.6803289349,1.7802344356,3.5665191113,3.7467534691,4.27102215,0.2857192759]
["sja-miR-2162-5p",6.7537260734,6.7537250906,6.6039762034,6.0298383966,5.8343981162,5.9480936701,6.6039358846,6.8705367971,6.4059494516,6.0298371414,6.1450766722,6.145059473,6.6039363286,7.1003454342,6.7537500398,6.2736011272,6.2735996352,5.7154777734,6.7537190102,6.4059251774,6.4849057195,6.4059075996,6.1450622438,6.1450599999,6.6039260508,6.4059152311,6.2735984926,5.2898888327,6.2735864562,6.2735823356,5.6530618948,5.7154613322,5.4919029923,5.6530624099,5.5878553882,5.4033488328,5.9480718292,6.1450608998,5.1080574689,5.8343927462,6.0297877289,5.989522792,5.2671374948,4.8378865626,5.5878486684,4.9828166664,5.2440927115,5.9483007462]
["sja-miR-2162-3p",10.9041375857,10.9041366029,10.90416141,11.1429245117,11.1429151986,10.9041603325,10.9041210913,10.9041212334,10.1014772904,11.1429232566,11.1429156131,10.9041362181,10.4537909725,10.9041117489,10.6642096707,10.6641865332,10.6641850412,11.6078316198,10.6641786412,10.4537997585,10.4537822754,10.4537821807,10.9041389889,10.6641848636,10.9041112575,10.4537898121,11.1428979758,10.9041415051,12.365199437,12.3651953163,10.4537918961,10.9041216241,10.9041204874,11.6078165285,11.6078312468,11.142901836,11.1429006874,11.9047970998,11.6078578301,12.3652233262,11.9047711031,12.3652149131,9.956238806,10.1014405714,10.4538004097,11.1429668743,10.4538331563,10.9043674085]
["sja-miR-219-5p",6.8705531494,6.6039513962,6.4059562662,6.7537508035,7.0137460713,6.7537488201,6.7537095789,7.0137143018,6.7537430831,7.1003947461,7.0137464857,7.1003699035,7.1003552207,7.390710781,7.1003952375,7.1003721,7.3907359548,7.7761821452,7.013723591,7.0137233898,7.2334975725,8.4049472522,8.124843121,7.7761808249,7.0137043259,7.2335051092,7.2335205142,7.1003751905,8.5891641241,8.7353774104,7.2335071932,7.1003553095,7.0137135559,8.5891633544,8.7353954797,8.7353974275,6.8705540552,7.2335223792,6.7537527633,9.0400608794,9.0400248947,9.0400524663,6.0297935309,6.2735805891,6.4059258287,8.4919214015,8.1248678512,8.4920841315]
["sja-miR-277",14.5870156584642,14.5156584642,14.5756584642,14.8597288926784,14.872826784,14.82889284,14.2376581186797,14.26581186797,14.276586797,14.9994275281725,14.994275281725,14.94275281725,13.5296745617646,13.596745617646,13.56745617646,13.9248125036058,13.948125036058,13.98125036058,13.3799198176465,13.399198176465,13.3198176465,14.1616830258014,14.16830258014,14.1830258014,12.9985904297453,12.985904297453,12.95904297453,12.8622499008515,12.82499008515,12.8499008515,14.1728962458698,14.12862458698,14.18962458698,14.4749100290987,14.49100290987,14.449190987,13.9540145077225,13.9545077225,13.940145077225,14.4741495484973,14.495484973,14.41495484973,14.2376581186797,14.2765186797,14.26581186797,13.6040898614692,13.60898614692,13.60898614692]
["sja-miR-219-3p",-2.343867167,-1.4369775542,-1.3742169917,-2.1739174354,-2.3438517499,-2.3438444202,-2.3438836614,-1.121491098,-2.2283729398,-2.343843692,-2.3438513355,-1.8520154383,-2.0833556672,-1.5279760683,-2.0833156504,-1.8627396484,-2.3438678301,-0.6159462329,-2.2283970127,0.0195302994,-2.0833643643,-2.1739670078,-1.8627390741,-2.3438680077,-2.256430654,-1.1344310122,-2.2849752837,-1.9980884108,-2.0833534588,-2.2284079123,-2.20092434,-1.7995626124,-2.2849905763,-0.6159613242,-2.2849733714,-2.2564022713,-2.2283890437,-2.2283898904,-0.8098619051,-0.6714317779,-1.3215252915,-0.9746317233,-2.3438873025,-2.2284096588,-1.7589112795,-2.083272524,-1.7995205174,0.2857192759]
["sja-miR-2a-5p",-1.5537902364,-1.4369775542,-0.7588808419,-0.0646187929,-0.1739267485,-0.1940973007,-1.0646600175,-1.121491098,-2.2283729398,-0.2849500029,-1.6341930873,-1.1086520729,-0.8573833556,0.2659013498,-0.2493256018,-1.8627396484,-0.9515504073,-2.2009087336,0.2460889516,-0.5494585651,0.0962851471,-0.8413916687,-0.7589032631,-0.62962249,-0.8735735605,-2.200926424,-0.8255436651,-1.9980884108,-2.0833534588,-2.2284079123,-2.20092434,-1.7995626124,-1.2706352833,-0.6159613242,-2.2849733714,-2.2564022713,-2.2283890437,-2.2283898904,-0.8098619051,0.3703883978,0.0711443948,-0.9746317233,-0.5712977986,-1.2635134598,-2.3438737802,-0.9008565784,-0.2670254366,0.2857192759]
["sja-miR-2a-3p",11.9047970406,11.9047960578,11.9048208649,12.3652380092,11.9048124577,11.607853887,12.3651967846,11.6078147879,11.1429167913,12.3652367541,12.3652291106,12.3652119114,11.6078150898,11.1428739447,11.142923748,11.6078319691,10.9041369226,11.9047975202,10.4537999598,11.1428925171,10.9041128382,10.9041127435,11.1429011847,10.904136745,11.1428734533,11.9047798298,11.6078293344,11.1429037009,10.9041237436,11.9047790779,11.6078160134,11.6078151786,11.1428826832,11.9047824289,11.9047971472,11.904799095,11.9047979465,11.1428998408,11.9048237305,11.1429098287,11.142873844,11.9047986747,10.9041174502,10.9041178765,11.607824527,10.6642527971,11.904823174,11.1431296044]
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