# Table listing 16S gene counts per SILVA core OTU, i.e. for SILVA OTUs that could be mapped to a genome.
# Genomes matched with SILVA OTUs as listed in table './output/SILVA_to_genomes/SILVA_to_genomes_with_16S_gene_counts.tsv'
# Table created from the following input table: ./output/genome_analysis/16S_counts_per_genome/16S_counts_per_genome_quality_filtered.tsv
# Used command:  ./dependencies/extract_subtable.py -v -i ./output/genome_analysis/16S_counts_per_genome/16S_counts_per_genome_quality_filtered.tsv -o ./output/16S_gene_counts_across_SILVA/16S_counts_per_SILVA_core.tsv --column_names_are_in last_comment_line --row_names_are_in_column genome --include_comments_in_output --save_output_row_names_under_column OTU --save_output_column_names_in first_data_line --new2old_names_table ./output/SILVA_to_genomes/SILVA_to_genomes_with_16S_gene_counts.tsv --new2old_names_column_names_are_in none --new_names_column 0 --old_names_column 1 --unrecognized_old_row_names skip --subset_rows_by new2old_row_names -f --verbose_prefix '  ' --add_comment_to_output_table 'Table listing 16S gene counts per SILVA core OTU, i.e. for SILVA OTUs that could be mapped to a genome.Genomes matched with SILVA OTUs as listed in table './output/SILVA_to_genomes/SILVA_to_genomes_with_16S_gene_counts.tsv''
# Generated on: 2018.01.08 16:40:43
#
OTU	16S_gene_count
CP007781.1143777.1145297	6
CP009220.1407405.1408905	6
JSLG01000050.7.1415	7
CP006766.2405688.2407233	6
LAZE01000069.45981.47559	5
ALIW01000278.322.1856	5
CP009704.4189432.4190962	6
LGJO01000001.250480.252007	8
CP002542.2752771.2754283	2
HQ697284.1.1240	4
HE802067.76641.78164	6
CP003122.246476.247905	4
HQ641336.1.1397	8
CP014540.173856.175399	6
AP012332.96440.97971	2
CR628337.408822.410330	3
AB021197.1.1523	10
CP007436.32842.34394	7
FIQV01000001.97110.98646	4
CP006597.2197771.2199323	6
CP004035.962664.964204	1
AE017244.901824.903360	1
CP000053.456383.457890	1
CP006596.2823744.2825296	6
CP012193.2238151.2239686	6
CP001673.2236594.2238105	2
AP014646.6618923.6620458	4
CP013950.2212401.2213956	9
CP002520.2495288.2496808	6
CP009158.1716290.1717907	6
AJ389886.1.1437	5
FLIT01000006.255139.256658	8
CP007744.4427194.4428735	7
KP126776.1.1467	6
LOGA01000188.1.1448	7
CP010811.3646218.3647746	8
CP002340.17812.19366	5
AP011163.2193284.2194751	4
CP000283.4550888.4552362	2
CP007562.1444754.1446302	6
AP014696.64609.66108	10
JWVA03000104.173.1716	1
HQ180185.1.1392	6
CP007542.1967576.1969066	2
CP001099.223297.224791	2
CP000449.1183394.1184853	2
AY457071.1.1481	1
CP003192.3061878.3063352	3
CP004045.1279283.1280821	5
FIRF01000002.40466.42002	4
CP002815.606159.607688	3
CT573326.3799142.3800659	7
CP003203.1695129.1696639	6
CP011150.9517.11070	7
CP004387.734019.735560	2
CP012529.754802.756387	4
AF061011.1.1507	6
LSZM01000030.3198.4676	8
CP009788.2447122.2448680	3
AB680234.1.1474	8
CR555306.2621003.2622527	4
CP009706.99726.101278	8
CP006818.1767579.1768946	2
JUJY01000050.58.1579	7
CP003190.6179419.6180945	5
CP000394.2029838.2031319	3
CP011117.2726107.2727635	6
CP003961.191891.193429	7
D83374.1.1477	7
CIBQ01000023.55.1585	7
CP005492.1068539.1070048	2
DQ174134.1.1343	3
CP001708.235850.237365	4
CU459141.3176071.3177525	6
CP006954.1776812.1778339	6
CP000958.344948.346473	6
KU597170.1.1340	4
CP010368.557009.558553	6
CP001068.3261972.3263502	3
CP013119.2066482.2068029	3
FN796482.1.1430	1
AP017302.5822710.5824245	4
CP003840.280319.281862	4
CP003207.1900417.1901808	5
CP007571.176159.177711	7
CP006773.70081.71551	5
CP008849.2744621.2746152	5
CP003922.330012.331548	4
LOGT01000027.3084.4637	7
CCMD01000001.2182091.2183758	7
CP003808.2091098.2092636	6
CP003283.378287.379694	3
CP002417.5899432.5900954	2
AE009951.451529.453030	5
CP002781.3071309.3072781	3
CP003192.612375.613849	3
LNFV01000069.54.1608	7
CP006942.233343.234870	6
AB255669.1.1472	8
AB479094.1.1362	3
CP010392.450370.451923	8
LXQL01000025.3511.4971	7
CP007572.23857.25409	7
CP003022.266797.268326	6
FIRW01000002.68967.70503	4
KM978955.1.1483	9
CP014947.765505.767051	5
CP002345.191924.193439	3
BBTS01000102.181.1698	6
CP007291.2752277.2753832	7
CP003511.314458.315962	2
AP012053.16683.18219	5
FISA01000003.4062.5598	4
FN563149.1865933.1867451	4
BA000008.999881.1001434	1
CP012869.4416361.4417916	6
CP010852.549377.550932	11
CT971583.2019450.2020913	2
CP002379.4015966.4017497	4
CP009981.4407849.4409386	11
CP001215.9207.10715	11
CP012027.1225125.1226660	4
AP012052.5062.6584	2
CP000526.1147286.1148773	5
CP004034.962800.964340	1
CP011104.1426876.1428425	7
CP000742.1041673.1043137	4
AB681193.1.1476	4
AB479100.1.1360	3
CP000046.577988.579542	6
CP000447.4524086.4525620	9
CP002972.2934417.2935868	4
CP007012.689605.691145	7
JF939189.1.1412	3
FIQW01000005.97108.98644	4
CP008854.246061.247600	11
CP000853.63174.64678	8
JQ406905.1.1500	4
CP011938.4052580.4054135	7
CP003368.1374622.1376046	5
LPMO01000005.322.1857	6
FN563149.240046.241564	4
CP007240.1434921.1436516	6
CP009464.1085952.1087489	11
CP010053.96391.97945	10
AB354234.1.1474	8
CP003101.1663308.1664867	4
AM039952.5058741.5060285	2
CP003924.787727.789261	4
AP012157.124050.125603	12
CP002526.36117.37637	5
CP009328.4288963.4290501	11
CP001361.1583595.1585127	3
CP000575.1117457.1119029	1
CP006659.120629.122168	8
CP014657.4448353.4449910	7
CP003217.2099736.2101243	5
JUOE01000432.154.1673	8
LFBW01000055.39.1558	8
CP001837.916199.917737	6
CP000958.43557.45082	6
CP011789.368493.370039	6
KC593859.1.1469	7
CP007499.580907.582462	6
AP011170.1733316.1734755	5
LN681231.3471391.3472852	7
CP003084.228645.230174	2
CP000507.56157.57693	8
CP010442.282928.284483	7
AM933173.3726948.3728489	7
HQ605916.1.1466	10
Z75316.1.1489	7
CP002772.873922.875402	3
CP011303.169418.170965	7
CP009087.4057606.4059159	7
CP001403.1117502.1118996	1
CP009652.353559.355072	2
FLEG01000006.3282.4801	8
CP015176.225826.227381	12
CP006574.1345399.1346940	6
FILQ01000023.3518.5054	4
LIDW01000099.84.1387	9
CTLK01000050.180.1709	7
CP000395.448432.449968	2
CP009938.580584.582137	9
LRDF01000001.3260787.3262342	2
CP009025.4580151.4581579	2
LOVJ01000007.3694.5227	6
CP004140.3212434.3213917	3
FLEB01000011.449.1968	8
CP007244.2958484.2960039	8
JF772520.1.1446	5
FO393392.16536.18036	7
CP000023.129043.130590	6
CP009577.1908236.1909887	6
CP008917.2321649.2323167	4
CP003025.279149.280684	6
CP000115.638302.639791	1
CP010322.3235536.3237118	11
CP006819.1838763.1840309	5
CP002421.55538.57066	4
CP015138.1689487.1691042	7
CP003933.3257249.3258614	3
CP003499.17821.19356	5
JNTI01000086.1.1459	12
LOOE01000002.1.1281	7
LN649235.4283181.4284722	7
CP009125.3680952.3682490	7
HM067028.1.1470	6
CP009935.1628094.1629624	7
AB429540.1.1440	5
JUCQ01000062.33.1497	7
CP001983.9182.10721	12
CP006773.3522714.3524184	5
CP009040.455897.457325	2
CP003211.711506.713012	5
HE579059.482262.483823	5
CP002191.573218.574707	5
AB178396.1.1409	5
FM242711.1732703.1734213	6
FJ844981.1.1454	5
JNLW01000005.476562.478080	5
CP012639.2503304.2504855	7
LN881739.7544317.7545764	7
CP003866.443926.445449	2
FM872307.856679.858231	2
CP012200.36826.38318	1
CP002898.1165968.1167526	4
CP000240.2052605.2053927	2
CP002383.220416.221948	10
FIHG01000015.35818.37354	4
CP007254.2707527.2709068	7
CP007600.1314614.1316166	6
CP006853.718060.719597	4
CP001633.1704176.1705698	3
CP003752.3891334.3892896	12
LDPA01000004.65142.66697	7
CP001969.228440.229981	7
CR925677.303748.305256	1
CP007248.294192.295733	7
CP011980.452683.454236	8
JYRY01000028.33.1588	7
CP007271.4223423.4224976	7
EU683030.1.1459	3
CP009907.1892306.1893879	4
CP008696.708554.710091	5
CP002775.4987451.4988980	7
CP003265.2449454.2450942	2
CP006763.2355334.2356831	9
LJAB01000202.47578.49094	1
CP009278.603213.604742	8
CP003500.488276.489694	6
CP010247.498176.499704	7
Y18359.1.1434	6
CP009996.3894990.3896518	6
CP009511.40604.42073	3
CP009102.4331248.4332803	7
CP002276.664211.665749	6
LQXZ01000003.462433.463949	6
CP001892.1880224.1881772	4
CP006574.2073346.2074887	6
AE000511.1511137.1512634	2
CP001095.961057.962575	4
AE017042.3504797.3506285	7
CP009512.3320549.3322018	3
CP002739.79434.81009	5
DQ489736.233634.235159	4
CP002010.2162954.2164472	3
LOCU01000194.145.1700	7
CP014234.791018.792564	4
L06108.1.1554	1
AM181739.1.1426	3
CP007247.3471242.3472783	7
JOKU01000024.134.1423	6
JQ951753.1.1514	5
CP009907.652598.654171	4
CP002956.4440021.4441566	6
CIWC01000034.26673.28194	7
CP006615.794814.796318	5
CDAH01000014.3562.5068	2
CP002773.5392613.5394142	7
HG326223.207699.209239	7
CP013068.1799461.1800945	3
CU928160.223130.224671	7
CP002859.1932891.1934383	2
EU492901.1.1418	7
CP003959.4845569.4847098	7
CP006937.6327466.6329002	4
CP000937.938443.939890	3
CP006265.650353.651892	4
AY268173.1.1461	4
CP009575.267187.268838	6
JXZP01000001.1505020.1506575	6
LWSH01000068.86.1526	4
CP009513.40520.41989	3
AY099182.1.1436	1
CJMX01000014.63.1584	7
AP012280.5918412.5919947	4
CP010947.4601597.4603154	10
AB035923.991.2532	7
CP003548.201748.203226	4
EU848560.1.1217	3
CP010557.717955.719506	8
CP015500.244274.245827	8
CP003614.4288160.4289647	2
AE017042.12057.13545	7
CP003497.1474962.1476487	4
CP000746.911481.913016	6
D89067.1.1548	2
LKQN01000022.31.1592	12
CP012171.89438.90971	6
CP000436.1644077.1645561	5
CP014945.3255405.3256931	5
CP009215.1840604.1842131	4
AOQA01000021.524.1967	4
CP007803.1461542.1463066	1
CP000012.1405703.1407205	2
CCIM01000001.265666.267185	8
FIFB01000020.3787.5323	4
AL646052.1532714.1534226	4
LDBQ01000048.10.1563	8
CP008854.741232.742771	11
CP014864.671927.673468	3
AP012277.2450001.2451489	2
CP007571.358040.359592	7
CP003810.90923.92462	7
CP000009.1603897.1605374	4
KF601905.1.1376	3
CP006696.266470.268017	2
CP006577.1951165.1952544	1
FBRS01000049.85.1604	8
CP001998.1561363.1562904	2
CP000891.44846.46383	10
CP009084.3963929.3965484	7
KF032892.1.1395	4
CP000023.1612153.1613700	6
CP002391.274946.276503	5
EU118103.1.1542	6
CP000512.5051796.5053317	3
CP003212.1142305.1143812	5
CP006648.236807.238345	8
CP000450.231716.233245	1
CP009418.1062301.1063854	4
AP011142.1541250.1542689	5
CP009991.1705822.1707350	6
CP006740.2344726.2346271	2
CP000573.485156.486643	4
CP012071.1027746.1029299	4
CP009102.289172.290727	7
AB680531.1.1489	8
CP010297.556521.558077	6
HE956757.29898.31371	1
CP009493.1383467.1385010	1
CP004851.2912061.2913588	5
AP012210.54264.55770	5
CP009436.1961329.1962840	3
JZYV01000058.143.1696	8
CP005492.1350465.1351974	2
CP013611.388436.389971	10
CP003252.1714260.1715664	2
HE965806.1276708.1278239	3
AE017263.191851.193375	2
KJ702541.1.1423	4
CP009576.318897.320548	6
KC695822.1.1434	7
CNFX01000075.7652.9171	1
CP012026.1684926.1686461	4
AE017261.470727.472195	1
CP002401.856722.858276	2
CP007576.4980518.4982061	10
CP007208.2831760.2833315	7
AB479091.1.1360	3
CP006644.3980059.3981549	3
AJ227757.1.1439	2
CIWI01000040.153.1674	7
CP014949.2112708.2114273	4
LKAE01000012.3374.4917	4
CP000943.2836913.2838399	6
CP000937.421500.422947	3
CP008805.4217121.4218662	7
CP009585.3256849.3258365	4
HE995405.3364521.3365993	3
CP002024.133899.135439	2
CP002614.289174.290703	7
KP696711.1.1345	6
LEVY01000003.2889384.2890911	8
CP001191.4146706.4148179	3
CP001151.1056816.1058270	4
LFZI01000004.193300.194853	7
FIML01000016.16851.18387	4
CP007273.4064896.4066449	7
CP000361.1918669.1920183	5
AM920689.4952053.4953597	2
DQ174181.1.1340	3
CP003049.1771227.1772749	3
CP006823.1423001.1424508	2
LAUB02000023.45035.46572	4
CP001337.835795.837268	3
JVEJ01000333.177.1698	7
LQTU01000166.8.1563	7
AJ227756.1.1439	2
CP002815.1800203.1801732	3
X90481.1.1416	1
CP013253.3835046.3836601	7
CP004048.2721462.2722992	6
JWZB01000005.145.1700	7
FLJW01000006.335740.337259	8
GU990615.1.1480	3
CP003261.4614287.4615674	9
JZZZ01000097.127.1680	8
CP009755.2956262.2957798	4
AP012541.1882758.1884331	5
CP007265.4699050.4700590	7
CP005493.1526115.1527625	2
CP000937.1507658.1509105	3
CP009693.247309.248822	3
GU567814.1.1453	3
CP002122.1707310.1708787	4
AP017295.5347890.5349364	4
CP006949.859478.860972	1
CP000423.845529.847096	5
CP009436.484767.486278	3
CP003961.5066836.5068374	7
CP003491.1380547.1382088	1
CP002421.599290.600818	4
CP009786.4438294.4439824	7
HF937208.289178.290721	7
CP002347.1401787.1403324	2
CP001868.1745875.1747347	2
AE008917.198647.200078	3
CP010817.3445260.3446765	5
CP000436.1942556.1944038	5
AP012210.267727.269233	5
CP005485.297158.298706	5
CP002103.277072.278608	2
CP000001.9337.10846	13
FIRG01000002.4352.5888	4
AP012325.1969695.1971226	5
CP010247.1632601.1634131	7
AM933172.3452074.3453625	7
CP002478.711634.713188	5
CP010811.149196.150726	10
EU014681.1.1413	7
FINQ01000003.3952.5488	4
JQ661137.1.1367	7
AJ227774.1.1435	2
CP009756.271407.272939	8
U28220.1.1462	4
CP008797.16081.17619	8
FIFM01000002.4263.5799	4
CP009004.5018690.5020118	2
AY788950.1.1491	3
LUYD01000025.398.1919	7
CP009049.145251.146806	7
CP002774.5392742.5394271	7
CP009749.561876.563430	9
CP003121.262974.264474	5
CP012023.1430540.1431953	2
CP003928.1036538.1038033	1
CP007534.1192663.1194204	7
CP010412.3899.5409	3
CP011104.435647.437196	7
CP007600.753920.755472	6
CP001921.50457.51981	6
LEWJ01000014.507381.508908	8
LHLJ01000023.38.1498	7
CYBY01000149.50.1313	7
CP001750.1976919.1978437	4
EU256458.1.1400	5
CP009679.91508.93055	7
CP003984.3012260.3013712	2
CP014197.4538636.4540190	7
HM347450.1.1377	10
U68447.1.1553	1
CP001632.609893.611401	4
AE016825.4437993.4439466	8
FJ969735.1.1454	10
HQ293033.1.1368	5
CJQP01000026.55.1584	7
CP003071.3794388.3795806	4
AE003852.401751.403286	8
AY370682.1.1508	5
JN617091.1.1356	11
CP001078.3547537.3549043	11
AF222894.145338.146803	2
AP014821.4144095.4145542	3
AP012324.1560056.1561590	2
CP003729.2316395.2317853	4
CJMQ01000013.147502.149023	7
CP002420.307243.308771	4
CP003022.2170176.2171705	6
AP012322.191665.193199	4
KC009686.1.1411	7
CP007659.538355.539910	6
CP011281.2497436.2499004	6
CP010278.570572.572089	6
CP002422.61234.62762	4
CP002479.859353.860895	4
CP000413.477570.479148	6
JZXY01000081.143.1696	8
CP001048.3422827.3424361	7
CP009920.1757051.1758588	13
CP002118.341308.342817	11
CP009089.4090195.4091748	7
CP004852.2884841.2886359	5
CP009237.1513507.1515110	6
FIML01000003.3856.5392	4
CP001341.942451.943960	5
CP004085.1288148.1289657	3
HM058857.1.1489	4
CP000746.562856.564391	6
CP015575.1146298.1147801	3
DQ232512.1.1470	7
CP001903.9197.10736	14
JQ746422.1.1309	4
CP000462.4369880.4371416	10
JN617090.1.1356	11
LPQH01000052.208046.209599	8
CP004858.238527.240089	14
CU459141.3731901.3733355	6
AP011135.2609931.2611398	5
CP009447.3211779.3213301	1
CP001853.172398.173629	4
AB680071.1.1476	4
CP002447.1694553.1696026	2
CP002682.872638.874189	2
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